status: PUBLIC

characteristic: SRA accession

text: fat sand rat

characteristic: common name

unit: YYYY-MM-DD

characteristic: date received

text: Gerbillinae

characteristic: family

text: individual

characteristic: material

text: Rodentia

characteristic: order

text: Psammomys obesus

characteristic: organism

text: VGP

characteristic: project

text: Noga Kronfeld-Schor

characteristic: provider

text: The Vertebrate Genomes Project aims to build reference quality genome assemblies for hundreds to thousands of vertebrate species.

characteristic: submission description

characteristic: submission identifier

text: VGP - Vertebrate Genomes Project

characteristic: submission title

characteristic: tissue storage

type: has member

Wellcome Trust Sanger Institute

Address: Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK


text: channel bull blenny

text: Bovichtidae

text: individual

text: Perciformes

text: Cottoperca gobio

text: VGP

text: Melody Clark

characteristic: provider id

text: VGP - Vertebrate Genomes Project

type: derived from


text: Percival's spiny mouse

text: Deomyinae

text: individual

text: Rodentia

text: Acomys percivali

text: VGP

text: David Thybert

text: VGP - Vertebrate Genomes Project


text: Kemp's spiny mouse

text: Deomyinae

text: individual

text: Rodentia

text: Acomys kempi

text: VGP

text: David Thybert

text: VGP - Vertebrate Genomes Project


text: crested rat

text: Muridae

text: individual

text: Rodentia

text: Lophiomys imhausi

text: VGP

text: David Thybert

text: VGP - Vertebrate Genomes Project


unit: month

characteristic: animal age at collection

text: esophagus

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: health status at collection

text: specimen from organism

text: Sus scrofa

text: esophagus

characteristic: organism part

text: FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol

text: Pig frozen tissue samples for FAANG

UC Davis

Role: material supplier role

Address: One Shields Ave, Davis, CA 95616

Kelly Chanthavixay

FirstName: Kelly

LastName: Chanthavixay

MidInitials: KC

Role: submitter


characteristic: SRA accession

text: zebrafish

characteristic: common name

text: Cyprinidae

characteristic: family

text: individual

characteristic: material

text: Cypriniformes

text: Danio rerio

text: VGP

text: Derek Stemple/John Postlethwait

text: DHAB

text: male

characteristic: sex

text: VGP - Vertebrate Genomes Project

text: depleted


text: zebrafish

text: Cyprinidae

text: individual

text: Cypriniformes

characteristic: order

text: Danio rerio

characteristic: organism

text: VGP

characteristic: project

text: Derek Stemple/John Postlethwait

characteristic: provider

text: DHTU

text: female

characteristic: submission description

text: VGP - Vertebrate Genomes Project

text: depleted


text: Zambia

characteristic: Geographic location (country and/or sea)

text: Lake Tanganyika

characteristic: Geographic location (region and locality)

characteristic: collection date

characteristic: date received

text: Cichlidae

text: individual

text: Cichliformes

text: Neolamprologus multifasciatus

text: VGP

text: Milan Malinsky

characteristic: provider id

text: male

characteristic: submission identifier

text: VGP - Vertebrate Genomes Project

characteristic: submission title

characteristic: tissue storage


characteristic: SRA accession

text: ploughfish

characteristic: common name

text: adult

characteristic: developmental stage

text: Bathydraconidae

text: organism part

text: Perciformes

text: Gymnodraco acuticeps

text: gonad

characteristic: organism part

text: VGP

text: T. Desvignes/ J. Postlethwait

text: VGP - Vertebrate Genomes Project


text: ploughfish

text: adult

text: Bathydraconidae

characteristic: family

text: organism part

characteristic: material

text: Perciformes

characteristic: order

text: Gymnodraco acuticeps

text: brain

text: VGP

text: T. Desvignes/ J. Postlethwait

text: VGP - Vertebrate Genomes Project


text: adult

text: Bathydraconidae

text: organism part

text: Perciformes

text: Akarotaxis nudiceps

characteristic: organism

text: gonad

text: VGP

characteristic: project

text: T. Desvignes/ J. Postlethwait

characteristic: provider

text: male

characteristic: sex

text: VGP - Vertebrate Genomes Project

text: RNAlater


text: emerald rockcod

text: adult

text: Nototheniidae

text: organism part

text: Perciformes

text: Trematomus bernacchii

text: gonad

text: VGP

text: J. Postlethwait/ T. Desvignes

characteristic: submission description

text: VGP - Vertebrate Genomes Project


text: emerald rockcod

characteristic: date received

text: adult

text: Nototheniidae

text: organism part

text: Perciformes

text: Trematomus bernacchii

text: muscle

text: VGP

text: J. Postlethwait/ T. Desvignes

text: VGP - Vertebrate Genomes Project


text: emerald rockcod

text: adult

text: Nototheniidae

text: organism part

text: Perciformes

text: Trematomus bernacchii

text: brain

text: VGP

text: J. Postlethwait/ T. Desvignes

characteristic: provider id

text: VGP - Vertebrate Genomes Project


text: adult

text: Bathydraconidae

text: organism part

text: Perciformes

text: Akarotaxis nudiceps

text: brain

text: VGP

text: T. Desvignes/ J. Postlethwait

text: male

characteristic: submission identifier

text: VGP - Vertebrate Genomes Project

text: RNAlater


text: adult

text: Bathydraconidae

text: organism part

text: Perciformes

text: Akarotaxis nudiceps

text: muscle

text: VGP

text: T. Desvignes/ J. Postlethwait

text: male

text: VGP - Vertebrate Genomes Project

characteristic: submission title

text: RNAlater


characteristic: description

text: Triticum aestivum

text: Triticum aestivum

characteristic: scientific name

text: A total of 18594 single-nucleotide polymorphisms were gathered to perform a genome-wide association study of coleoptile length on a set of 707 Chinese wheat landraces.

text: A genome-wide association study of coleoptile length in various Chinese wheat landraces

Triticeae Research Institute

Address: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang,Chengdu 611130, Sichuan Province, China

Lin Yu

FirstName: Lin

LastName: Yu


characteristic: SRA accession

text: Sorghum

characteristic: common name

text: Unique sample 45 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor

text: Sorghum seed storage protein genes were sequenced to discover variants associated with sorghum grain protein digestibility in a diverse subsample of sorghum association panel

text: Targeted sequencing of sorghum seed storage protein genes

Department of Agronomy

Address: 2002 Throckmorton Plant Sciences Center, 1712 Claflin Rd, Manhattan, KS 66506

Dechassa Duressa

FirstName: Dechassa

LastName: Duressa


text: Sorghum

text: Unique sample 22 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 10 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 26 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


Macia

text: Sorghum

text: Unique sample 53 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 37 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 19 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


SC 659

text: Sorghum

text: Unique sample 54 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 14 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 16 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 11 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 18 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 25 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 32 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 48 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 6 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 31 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor

text: Sorghum seed storage protein genes were sequenced to discover variants associated with sorghum grain protein digestibility in a diverse subsample of sorghum association panel


SC 1489

text: Sorghum

text: Unique sample 49 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor

text: Targeted sequencing of sorghum seed storage protein genes


SC 240

text: Sorghum

text: Unique sample 56 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 44 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 52 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 43 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 39 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 41 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 51 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 2 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 17 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 34 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 29 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 28 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 35 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


SC 91

text: Sorghum

text: Unique sample 50 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 24 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor

text: Sorghum seed storage protein genes were sequenced to discover variants associated with sorghum grain protein digestibility in a diverse subsample of sorghum association panel


Dorado

text: Sorghum

text: Unique sample 3 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor

text: Targeted sequencing of sorghum seed storage protein genes


text: Sorghum

text: Unique sample 33 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 21 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 9 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 46 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 42 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 38 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 23 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 8 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 1 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 30 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


HEGARI

text: Sorghum

text: Unique sample 20 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


RTX 436

text: Sorghum

text: Unique sample 55 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 13 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 36 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 12 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor

text: Sorghum seed storage protein genes were sequenced to discover variants associated with sorghum grain protein digestibility in a diverse subsample of sorghum association panel


text: Sorghum

text: Unique sample 4 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor

text: Targeted sequencing of sorghum seed storage protein genes


text: Sorghum

text: Unique sample 15 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 5 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


text: Sorghum

text: Unique sample 7 - Selected from sorghum association panel of about 300 lines

text: Sorghum bicolor

text: Sorghum bicolor


characteristic: Biomaterial Core - Biomaterial Id

characteristic: HCA Biomaterial Type

characteristic: HCA Biomaterial UUID

text: mucosa including epithelium

characteristic: Organ Parts - 0

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: State Of Specimen - Ischemic Time

text: Heavy blood clot on tissue

characteristic: State Of Specimen - Microscopic Description

characteristic: State Of Specimen - Postmortem Interval

characteristic: collection time

text: Fresh oesophagus

text: oesophagus

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas

characteristic: title


text: mucosa including epithelium

text: cryopreservation, other

text: cold

text: 72h oesophagus

text: oesophagus

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas

characteristic: project


text: parenchyma

text: lower right lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

text: cold

text: This sample had large black whirls on the tissue and was from a heavy smoker. Cells with black granules were apparent in the single cell suspension. Therefore only the 'fresh' timepoint from this donor was processed.

text: Fresh lung

characteristic: description

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: Small cells

characteristic: Cell Morphology - Cell Morphology

text: Trypan blue; manual haemacytometer (C-chip)

characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

characteristic: Estimated Cell Count

characteristic: SRA accession

text: 72h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 72h lung cells


characteristic: Biomaterial Core - Biomaterial Id

characteristic: HCA Biomaterial Type

characteristic: HCA Biomaterial UUID

text: epithelial cell of esophagus

characteristic: Selected Cell Types - 0

text: 72h oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: 72h oesophagus cells


text: Normal

text: epithelial cell of esophagus

text: 72h oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: 72h oesophagus cells


text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: State Of Specimen - Ischemic Time

characteristic: State Of Specimen - Postmortem Interval

text: 12h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: cryopreservation, other

text: cold

characteristic: collection time

text: 72h spleen

text: spleen

characteristic: organ

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas

characteristic: project

characteristic: title


text: parenchyma

text: lower left lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

text: cold

text: Clinic lung

characteristic: description

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: Good range of large and small cells

characteristic: Cell Morphology - Cell Morphology

characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

characteristic: Estimated Cell Count

characteristic: SRA accession

text: epithelial cell of esophagus

text: 12h oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: 12h oesophagus cells


characteristic: Biomaterial Core - Biomaterial Id

characteristic: HCA Biomaterial Type

characteristic: HCA Biomaterial UUID

text: spleen immune cells

characteristic: Selected Cell Types - 0

text: 24h spleen cells

text: Homo sapiens

text: Human Cell Atlas

text: 24h spleen cells


text: epithelial cell of esophagus

text: 12h oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: 12h oesophagus cells


text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: State Of Specimen - Ischemic Time

characteristic: State Of Specimen - Postmortem Interval

text: 24h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: spleen immune cells

text: 72h spleen cells

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas

characteristic: project

text: 72h spleen cells

characteristic: title


text: cryopreservation, other

text: cold

characteristic: collection time

text: Clinic spleen

characteristic: description

text: spleen

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas


text: Normal

characteristic: Cell Morphology - Cell Morphology

characteristic: Cell Morphology - Cell Viability Method

characteristic: Estimated Cell Count

text: epithelial cell of esophagus

text: 24h oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: 24h oesophagus cells


characteristic: Biomaterial Core - Biomaterial Id

characteristic: HCA Biomaterial Type

text: parenchyma

text: lower left lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

characteristic: SRA accession

text: cold

text: Very bloody sample with a few black flecks visible.

characteristic: State Of Specimen - Microscopic Description

text: Fresh lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: Small cells. Cell pellet looks dark grey.

characteristic: Cell Morphology - Percent Cell Viability

characteristic: HCA Biomaterial UUID

text: Fresh lung cells

text: Homo sapiens

text: Human Cell Atlas

text: Fresh lung cells


text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: State Of Specimen - Ischemic Time

characteristic: State Of Specimen - Postmortem Interval

text: 72h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: Small cells

text: 24h lung cells

characteristic: description

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas

characteristic: project

text: 24h lung cells

characteristic: title


text: Small cells

characteristic: Cell Morphology - Cell Morphology

characteristic: Cell Morphology - Cell Viability Method

characteristic: Estimated Cell Count

text: 72h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 72h lung cells


characteristic: Biomaterial Core - Biomaterial Id

characteristic: HCA Biomaterial Type

text: cryopreservation, other

text: cold

characteristic: collection time

text: fresh spleen

text: spleen

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas


characteristic: Cell Morphology - Percent Cell Viability

characteristic: HCA Biomaterial UUID

characteristic: SRA accession

text: spleen immune cells

characteristic: Selected Cell Types - 0

text: Fresh spleen cells

text: Homo sapiens

text: Human Cell Atlas

text: Fresh spleen cells


text: Normal

text: spleen immune cells

text: 12h spleen cells

text: Homo sapiens

text: Human Cell Atlas

text: 12h spleen cells


text: Normal

text: spleen immune cells

text: 72h spleen cells

text: Homo sapiens

text: Human Cell Atlas

text: 72h spleen cells


text: Small cells

text: 12h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 12h lung cells


text: epithelial cell of esophagus

text: Fresh oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: Fresh oesophagus cells


text: mucosa including epithelium

characteristic: Organ Parts - 0

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: State Of Specimen - Ischemic Time

text: Heavy blood clot on tissue

characteristic: State Of Specimen - Microscopic Description

text: 72h oesophagus

text: oesophagus

text: Homo sapiens

text: Human Cell Atlas


text: mucosa including epithelium

text: cryopreservation, other

text: cold

text: Heavy blood clot on tissue

characteristic: State Of Specimen - Postmortem Interval

text: Fresh oesophagus

characteristic: description

text: oesophagus

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas

characteristic: project

characteristic: title


characteristic: Biomaterial Core - Biomaterial Id

text: Small cells

characteristic: Cell Morphology - Cell Morphology

characteristic: Cell Morphology - Cell Viability Method

characteristic: Estimated Cell Count

characteristic: HCA Biomaterial Type

text: Fresh lung cells

text: Homo sapiens

text: Human Cell Atlas

text: Fresh lung cells


text: Normal

characteristic: Cell Morphology - Percent Cell Viability

characteristic: HCA Biomaterial UUID

characteristic: SRA accession

text: epithelial cell of esophagus

text: 24h oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: 24h oesophagus cells


text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: collection time

text: Fresh lung

text: lung

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas


text: Small cells

text: 24h lung cells

characteristic: description

text: Homo sapiens

text: Human Cell Atlas

text: 24h lung cells


text: mucosa including epithelium

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: State Of Specimen - Ischemic Time

characteristic: State Of Specimen - Postmortem Interval

text: 24h oesophagus

text: oesophagus

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas


characteristic: Biomaterial Core - Biomaterial Id

text: Normal

characteristic: Cell Morphology - Cell Morphology

text: spleen immune cells

characteristic: Selected Cell Types - 0

text: 24h spleen cells

text: Homo sapiens

text: Human Cell Atlas

characteristic: project

text: 24h spleen cells

characteristic: title


characteristic: HCA Biomaterial Type

characteristic: HCA Biomaterial UUID

text: cryopreservation, other

text: cold

text: 72h spleen

text: spleen

text: Homo sapiens

text: Human Cell Atlas


text: Low cell yield; particularly few large cells

characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

characteristic: Estimated Cell Count

characteristic: SRA accession

text: epithelial cell of esophagus

text: 72h oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: 72h oesophagus cells


text: mucosa including epithelium

characteristic: Organ Parts - 0

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: collection time

text: 72h oesophagus

text: oesophagus

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas


text: Normal

text: epithelial cell of esophagus

text: 12h oesophagus cells

characteristic: description

text: Homo sapiens

text: Human Cell Atlas

text: 12h oesophagus cells


text: Note red blood cell lysis initially failed and was repeated but final cell yield was low and some blood cells still visually apparent

text: epithelial cell of esophagus

text: 24h oesophagus cells

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas

text: 24h oesophagus cells


characteristic: Biomaterial Core - Biomaterial Id

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: State Of Specimen - Ischemic Time

characteristic: State Of Specimen - Postmortem Interval

text: 24h spleen

text: spleen

text: Homo sapiens

text: Human Cell Atlas


text: Small cells

characteristic: Cell Morphology - Cell Morphology

text: Fresh-12h lung cells

text: Homo sapiens

text: Human Cell Atlas

characteristic: project

text: Fresh-12h lung cells

characteristic: title


characteristic: HCA Biomaterial Type

characteristic: HCA Biomaterial UUID

text: parenchyma

text: lower left lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

text: cold

text: 12h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: cryopreservation, other

characteristic: SRA accession

text: cold

text: 12h spleen

text: spleen

text: Homo sapiens

text: Human Cell Atlas


text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

text: cryopreservation, other

text: cold

text: 72h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: mucosa including epithelium

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

text: 12h oesophagus

text: oesophagus

text: Homo sapiens

text: Human Cell Atlas


text: Small cells

characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

characteristic: Estimated Cell Count

text: 12h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 12h lung cells


text: parenchyma

text: lower left lobe

text: cryopreservation, other

text: cold

characteristic: collection time

text: Clinic lung

characteristic: description

text: lung

characteristic: organ

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas


characteristic: Biomaterial Core - Biomaterial Id

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Temperature

text: clinic spleen

text: spleen

text: Homo sapiens

text: Human Cell Atlas


text: Good range of large and small cells

characteristic: Cell Morphology - Cell Morphology

text: epithelial cell of esophagus

characteristic: Selected Cell Types - 0

text: Fresh oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

characteristic: project

text: Fresh oesophagus cells


text: Small cells

characteristic: HCA Biomaterial Type

characteristic: HCA Biomaterial UUID

text: Fresh lung cells

text: Homo sapiens

text: Human Cell Atlas

text: Fresh lung cells

characteristic: title


text: cryopreservation, other

characteristic: SRA accession

text: cold

characteristic: State Of Specimen - Ischemic Time

characteristic: State Of Specimen - Postmortem Interval

text: fresh spleen

text: spleen

text: Homo sapiens

text: Human Cell Atlas


text: Normal

characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

text: spleen immune cells

text: 12h spleen cells

text: Homo sapiens

text: Human Cell Atlas

text: 12h spleen cells


text: Small cells. Cell pellet looks dark grey-black. Low cell yield after red blood cell lysis - not sure why.

characteristic: Estimated Cell Count

text: 72h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 72h lung cells


text: Normal

text: spleen immune cells

text: 24h spleen cells

characteristic: description

text: Homo sapiens

text: Human Cell Atlas

text: 24h spleen cells


text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: collection time

text: Fresh-12h lung

text: lung

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas


characteristic: Biomaterial Core - Biomaterial Id

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Temperature

text: 72h spleen

text: spleen

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas


characteristic: HCA Biomaterial Type

characteristic: HCA Biomaterial UUID

text: mucosa including epithelium

text: cryopreservation, other

text: cold

text: 24h oesophagus

text: oesophagus

text: Homo sapiens

text: Human Cell Atlas

characteristic: project


text: cryopreservation, other

characteristic: SRA accession

text: cold

characteristic: State Of Specimen - Ischemic Time

text: 24h spleen

text: spleen

text: Homo sapiens

text: Human Cell Atlas

characteristic: title


text: Small cells. Note poor viability from this sample.

characteristic: Cell Morphology - Cell Morphology

characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

text: 72h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 72h lung cells


text: Cell pellet was black. Some cells contained black granules. Wider range of cell sizes visible than with the other donors we processed. Is this because the donor was a heavy smoker?

characteristic: Estimated Cell Count

text: Fresh lung cells

characteristic: description

text: Homo sapiens

text: Human Cell Atlas

text: Fresh lung cells


text: Small cells

text: 24h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 24h lung cells


text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: State Of Specimen - Postmortem Interval

text: 72h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


characteristic: Biomaterial Core - Biomaterial Id

text: Normal

text: spleen immune cells

characteristic: Selected Cell Types - 0

text: 72h spleen cells

text: Homo sapiens

text: Human Cell Atlas

text: 72h spleen cells


characteristic: HCA Biomaterial Type

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: collection time

text: Fresh spleen

text: spleen

characteristic: organ

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas


characteristic: HCA Biomaterial UUID

text: parenchyma

text: lower left lobe

text: cryopreservation, other

characteristic: SRA accession

text: cold

characteristic: State Of Specimen - Ischemic Time

text: 12h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas

characteristic: project

characteristic: title


text: Normal

characteristic: Cell Morphology - Cell Morphology

characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

characteristic: Estimated Cell Count

text: epithelial cell of esophagus

text: 72h oesophagus cells

characteristic: description

text: Homo sapiens

text: Human Cell Atlas

text: 72h oesophagus cells


characteristic: Biomaterial Core - Biomaterial Id

text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

characteristic: State Of Specimen - Microscopic Description

text: Clinic lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: Small cells. Cell pellet looks dark grey. A lot of dead cells before live dead separation.

characteristic: HCA Biomaterial Type

text: 24h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 24h lung cells


text: epithelial cell of esophagus

characteristic: Selected Cell Types - 0

text: 24h oesophagus cells

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas

text: 24h oesophagus cells


characteristic: HCA Biomaterial UUID

characteristic: SRA accession

text: 12h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 12h lung cells


text: mucosa including epithelium

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: State Of Specimen - Ischemic Time

characteristic: State Of Specimen - Postmortem Interval

characteristic: collection time

text: 12h oesophagus

text: oesophagus

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas

characteristic: project


text: Small cells

characteristic: Cell Morphology - Cell Morphology

characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

characteristic: Estimated Cell Count

text: Fresh lung cells

characteristic: description

text: Homo sapiens

text: Human Cell Atlas

text: Fresh lung cells

characteristic: title


characteristic: Biomaterial Core - Biomaterial Id

characteristic: HCA Biomaterial Type

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

text: 12h spleen

text: spleen

text: Homo sapiens

text: Human Cell Atlas


text: Small cells

characteristic: HCA Biomaterial UUID

text: 72h lung cells

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas

text: 72h lung cells


text: Normal

characteristic: SRA accession

text: epithelial cell of esophagus

characteristic: Selected Cell Types - 0

text: 12h oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: 12h oesophagus cells


text: 24h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 24h lung cells


text: mucosa including epithelium

characteristic: Organ Parts - 0

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Temperature

text: Mixture of different cell sizes apparent

characteristic: State Of Specimen - Microscopic Description

characteristic: State Of Specimen - Postmortem Interval

text: fresh oesophagus

text: oesophagus

text: Homo sapiens

text: Human Cell Atlas


text: parenchyma

text: lower left lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Time

characteristic: collection time

text: 24h lung

text: lung

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas

characteristic: project


characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

characteristic: Estimated Cell Count

text: spleen immune cells

text: 12h spleen cells

characteristic: description

text: Homo sapiens

text: Human Cell Atlas

text: 12h spleen cells

characteristic: title


characteristic: Biomaterial Core - Biomaterial Id

text: Normal

characteristic: Cell Morphology - Cell Morphology

characteristic: HCA Biomaterial Type

characteristic: HCA Biomaterial UUID

text: epithelial cell of esophagus

text: 24h oesophagus cells

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas

text: 24h oesophagus cells


text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

characteristic: SRA accession

text: cold

characteristic: State Of Specimen - Ischemic Temperature

text: Fresh lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: Small cells

text: 24h lung cells

text: Homo sapiens

text: Human Cell Atlas

text: 24h lung cells


text: mucosa including epithelium

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Time

text: Heavy blood clot on tissue

characteristic: State Of Specimen - Microscopic Description

characteristic: State Of Specimen - Postmortem Interval

characteristic: collection time

text: 12h oesophagus

text: oesophagus

text: Homo sapiens

text: Human Cell Atlas


text: mucosa including epithelium

text: cryopreservation, other

text: cold

text: 72h oesophagus

text: oesophagus

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas

characteristic: project


text: parenchyma

text: lower right lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

text: cold

text: Clinic lung

characteristic: description

text: lung

text: Homo sapiens

text: Human Cell Atlas


characteristic: Biomaterial Core - Biomaterial Id

text: parenchyma

text: lower left lobe

text: cryopreservation, other

text: cold

text: 72h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas

characteristic: title


characteristic: HCA Biomaterial Type

text: parenchyma

text: lower left lobe

text: cryopreservation, other

text: cold

text: clinic lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


characteristic: HCA Biomaterial UUID

text: cryopreservation, other

text: cold

text: 24h spleen

text: spleen

text: Homo sapiens

text: Human Cell Atlas


text: mucosa including epithelium

text: cryopreservation, other

text: cold

text: Fresh oesophagus

text: oesophagus

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas


text: parenchyma

characteristic: Organ Parts - 0

text: lower left lobe

text: cryopreservation, other

text: cold

text: 12h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: mucosa including epithelium

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

text: Heavy blood clot on tissue

text: 24h oesophagus

text: oesophagus

text: Homo sapiens

text: Human Cell Atlas


text: Possibly fewer large cells than fresh; 12h timepoints?

characteristic: Cell Morphology - Cell Morphology

characteristic: Cell Morphology - Cell Viability Method

characteristic: Cell Morphology - Percent Cell Viability

characteristic: Estimated Cell Count

characteristic: SRA accession

text: epithelial cell of esophagus

characteristic: Selected Cell Types - 0

text: 24h oesophagus cells

text: Homo sapiens

text: Human Cell Atlas

text: 24h oesophagus cells


text: parenchyma

text: lower left lobe

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Temperature

characteristic: State Of Specimen - Ischemic Time

characteristic: State Of Specimen - Postmortem Interval

characteristic: collection time

text: Fresh-12h lung

text: lung

characteristic: organ

text: Homo sapiens

text: Human Cell Atlas


characteristic: Biomaterial Core - Biomaterial Id

text: parenchyma

text: lower left lobe

characteristic: Organ Parts - 1

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Microscopic Description

text: Clinic lung

characteristic: description

text: lung

text: Homo sapiens

text: Human Cell Atlas

characteristic: project

characteristic: title


characteristic: HCA Biomaterial Type

characteristic: HCA Biomaterial UUID

text: cryopreservation, other

characteristic: Preservation Storage - Preservation Method

text: cold

text: fresh spleen

text: spleen

text: Homo sapiens

characteristic: organism

text: Human Cell Atlas


text: cryopreservation, other

characteristic: SRA accession

text: cold

text: 12h spleen

text: spleen

text: Homo sapiens

text: Human Cell Atlas


text: parenchyma

characteristic: Organ Parts - 0

text: lower right lobe

text: cryopreservation, other

text: cold

text: Fresh lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: parenchyma

text: lower left lobe

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Temperature

text: 24h lung

text: lung

text: Homo sapiens

text: Human Cell Atlas


text: mucosa including epithelium

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Ischemic Time

text: 12h oesophagus

text: oesophagus

text: Homo sapiens

text: Human Cell Atlas


text: mucosa including epithelium

text: cryopreservation, other

text: cold

characteristic: State Of Specimen - Postmortem Interval

text: fresh oesophagus

text: oesophagus

text: Homo sapiens

text: Human Cell Atlas


characteristic: Alternative id

text: missing geographic information

characteristic: Birth location accuracy

characteristic: Data source ID

text: Template

characteristic: Data source type

text: 2020-05-13, version 1.5

characteristic: Data source version

text: Germany

characteristic: EFABIS Breed country

text: Germany

characteristic: Gene bank country

text: FLI

characteristic: Gene bank name

characteristic: IMAGE submission id

text: chicken breed

characteristic: Mapped breed

text: Höltystr. 10, 31535 Neustadt am Rübenberge

characteristic: Organization address

text: Germany

characteristic: Organization country

text: Friedrich Loeffler Institut - Bundesforschungsinstitut fuer Tiergesundheit

characteristic: Organization name

text: submitter

characteristic: Organization role

characteristic: Organization uri

characteristic: Person affiliation

text: mailto:robin.garcia@fli.de

characteristic: Person email

text: Robin

characteristic: Person first name

text: LBW

characteristic: Person initial

text: Garcia

characteristic: Person last name

text: submitter

characteristic: Person role

text: White Leghorn

characteristic: Supplied breed

text: organism

characteristic: material

text: Gallus gallus

text: IMAGE

text: female

characteristic: sex

text: Gallus gallus

characteristic: species

text: IMAGE project - Task T6.3 - Case study

characteristic: submission description

text: White Leghorn chicken

characteristic: submission title


characteristic: SRA accession

text: Bovine DNA from blood

characteristic: description

text: Bos taurus

characteristic: organism

text: Bos taurus

characteristic: scientific name

text: Female

text: SNP-based quantitative deconvolution of biological mixtures: application to the 1 detection of cows with subclinical mastitis by whole genome sequencing of tank milk.

characteristic: submission identifier

text: blood

characteristic: tissue type

GIGA-Genomics core facility

Address: 1 Avenue de l'Hopital 4000-Liège, Belgium

Wouter Coppieters

FirstName: Wouter

LastName: Coppieters


text: Bovine DNA from blood

text: Bos taurus

text: Bos taurus


unit: day

characteristic: animal age at collection

text: bursa tissue collected from juvenile chick

text: juvenile stage

characteristic: developmental stage

text: specimen from organism

text: Gallus gallus

text: bursa of Fabricius

characteristic: organism part

text: FAANG

characteristic: project

characteristic: specimen collection date

characteristic: specimen collection protocol

text: Chickens were subjected to NDV infection and heat stress. Bursa tissues collected at 6DPI were used for genome-wide sequencing assays.

text: NDV heat stress chicken bursa

UC Davis

Address: one shields avenue, davis, CA 95616


characteristic: Alternative id

text: missing geographic information

characteristic: Birth location accuracy

characteristic: Data source ID

text: Template

characteristic: Data source type

text: 2020-05-19, version 1.5

characteristic: Data source version

text: Germany

characteristic: EFABIS Breed country

text: Germany

characteristic: Gene bank country

text: FLI

characteristic: Gene bank name

characteristic: IMAGE submission id

text: chicken breed

characteristic: Mapped breed

characteristic: Organization address

text: Germany

characteristic: Organization country

characteristic: Organization name

text: submitter

characteristic: Organization role

characteristic: Organization uri

characteristic: Person affiliation

text: mailto:robin.garcia@fli.de

characteristic: Person email

text: Robin

characteristic: Person first name

text: LBW

characteristic: Person initial

text: Garcia

characteristic: Person last name

text: submitter

characteristic: Person role

text: chicken

characteristic: Supplied breed

text: organism

characteristic: material

text: Gallus gallus

text: IMAGE

text: female

text: Gallus gallus

text: IMAGE project - Task T6.3 - Case study

text: Other chicken

characteristic: title


characteristic: SRA accession

text: House Mouse

characteristic: common name

text: Sham exposed

characteristic: description

text: Adult

characteristic: dev stage

text: Whole Hippocampus

text: Mus Musculus

characteristic: organism

text: Mus Musculus

characteristic: scientific name

text: Male

characteristic: sex

text: 6mo. old male C57bl/6j mice were exposed to 0.5 Gy of 1H (600MeV/n) followed by 0.1Gy of 16O (600MeV/n). 9 mo. later, mice were sacrificed, their whole hippocampi were collected, snap frozen, and genomic DNA was isolated. DNA was processed and sequenced against a custom targeted array for genes involved in oxidative stress, inflammation, and immediate early genes. SNP analyses were conducted and compared between sham and irradiated animals.

characteristic: submission description

characteristic: submission identifier

text: Late effects of 1H + 16O on hippocampal mutagenesis

characteristic: submission title

Allen

Address: 4301 W Markham St, Little Rock, AR, 72205, USA

Frederico Kiffer

FirstName: Frederico

LastName: Kiffer


text: House Mouse

text: 1H + 16O exposed - These male mice received 0.5 Gy of 150 MeV/n 1H, and within the same hour, 0.1 Gy of 600 MeV/n 16O, at 6mo of age, and sacrificed at 15mo of age.

text: Adult

text: Whole Hippocampus

text: Mus Musculus

text: Mus Musculus

text: Male


text: House Mouse

text: 1H + 16O exposed

text: Adult

text: Whole Hippocampus

text: Mus Musculus

text: Mus Musculus

text: Male


text: House Mouse

text: 16O exposed

text: Adult

text: Whole Hippocampus

text: Mus Musculus

text: Mus Musculus

text: Male


text: House Mouse

text: 16O exposed - These male mice received 600 MeV/n 16O, at 6mo of age, and sacrificed at 15mo of age.

text: Adult

text: Whole Hippocampus

text: Mus Musculus

text: Mus Musculus

text: Male


text: House Mouse

text: Sham exposed - These male mice received no charged-particle radiation, but were subjected to minor ammounts of background electromagnetic radiation from activated metals in the beam line of NASA's space radiation laboratory

text: Adult

text: Whole Hippocampus

text: Mus Musculus

text: Mus Musculus

text: Male


text: Sire tail hair sample - Tail hair sample of the sire of the deceased calf affected with ichthyosis fetalis

text: Bos taurus

text: Bos taurus

text: Screening of all exons of the ABCA12 gene to elucidate the mutation responsible for ichthyosis fetalis in a Polled Hereford calf. The variants were originally reported on the 3-prime strand (C/CC)

text: A novel ABCA12 frameshift mutation segregates with ichthyosis fetalis in a Polled Hereford calf.

Biotechnology

Address: Woodbridge Road, Menangle, NSW, AUSTRALIA, 2568

Katie Eager

FirstName: Katie

LastName: Eager


text: Dam tail hair sample - Tail hair sample of the dam of the deceased calf affected with ichthyosis fetalis

text: Bos taurus

text: Bos taurus


text: Unrelated animal sample - Tail hair sample from an unrelated Polled Hereford animal

text: Bos taurus

text: Bos taurus


text: Affected animal sample - Skin sample was taken from a deceased calf affected with ichthyosis fetalis

text: Bos taurus

text: Bos taurus


Tilapia-pools

text: Nile tilapia

text: DNA pools of 100 Nile tilapia (GIFT) individuals - DNA pools containing equimolar DNA from 100 Nile tilapia (GIFT) individuals

text: Oreochromis niloticus

text: Oreochromis niloticus

text: GIFT

characteristic: strain

text: This project aims to develop and apply genomic tools to enhance selective breeding of Nile tilapia, with a focus on disease resistance.

text: Genomic selection to enhance tilapia breeding

Genetics and Genomics

Address: Easter Bush, EH25 9RG

Ross Houston

FirstName: Ross

LastName: Houston


characteristic: Unique Name Prefix

text: Sheep

text: Sterile

text: Ovis aries

text: Ovis aries

text: Identification genetic variant increasing prolificacy

text: Icelandic prolific sheep

Name: Molecular Genetics and Systemsbiology:Dept. of Molecular Biology and Genetics

Address: C.F. Mollers Allé 3, 8000 Aarhus C, Denmark

Lars-Erik Holm

FirstName: Lars-Erik

LastName: Holm


text: Sheep

text: Normal fecundity

text: Ovis aries

text: Ovis aries

text: Icelandic prolific sheep


text: Sheep

text: Increased fecundity

text: Ovis aries

text: Ovis aries

text: Icelandic prolific sheep


Gbs-hsrats

text: Norway rat

text: HS Rats Genotyped by Sequencing - 6,147 N/NIH heterogeneous stock (HS) rats genotyped using genotyping by sequencing

text: Adult

text: Rattus norvegicus

text: Rattus norvegicus

text: Archive of SNPs without an rsid assignment found through applying reduced representation approaches and imputation. The work is supported by P50 DA037844.

text: N/NIH heterogeneous stock (HS) rat genotyping by sequencing

text: Whole spleen

characteristic: tissue type

Name: Abraham A. Palmer, University of California - San Diego

Address: 9500 Gilman Drive 0667 La Jolla, CA 92093-0667

Bonnie Lin

FirstName: Bonnie

LastName: Lin


text: tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: female

text: Nile tilapia belongs to the second most cultivated group of fish in the world, mainly because of its favorable characteristics for production. Genetic improvement programs and domestication process of Nile tilapia may have modified the genome through selective pressure, leaving signals that can be detected at the molecular level. In this work, signatures of selection were identified using whole-genome re-sequencing of 326 individuals from three strains (A, B and C) of farmed tilapia maintained in Brazil and Costa Rica was carried out using Illumina HiSeq 2500 technology. After applying conventional SNP-calling and quality-control pipelines, ~1.3M high-quality SNPs. We detected several candidate genes putatively subjected to selection in each strain. These candidate genes represent putative genomic landmarks that could contain functions of biological and commercial interest.

text: Whole genome re-sequencing reveals recent signatures of selection in three strains of farmed Nile tilapia (Oreochromis niloticus)

Aquaculture Genomics Lab

Address: Faculty of Veterinary and Animal Sciences, Av. Santa Rosa 11735, La Pintana

Maria Cadiz

FirstName: Maria

LastName: Cadiz


text: tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: male


text: Bovine DNA

text: Bos taurus

text: Bos taurus

text: s

text: SNP-based quantitative deconvolution of biological mixtures: application to the 1 detection of cows with subclinical mastitis by whole genome sequencing of tank milk.


text: Arabidopsis thaliana sample 1099

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Identification of SVs in 1301 A. thaliana accessions. SVs were identified using publically available NGS data.

text: Patterns of structural variation in 1301 A. thaliana accessions reveal signals of selection to biotic and abiotic stress

AG Hancock

Address: Carl-von-Linne-Weg 10, 50829 Koln

Mehmet Goktay

FirstName: Mehmet

LastName: Goktay


text: Arabidopsis thaliana sample 628

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 1107

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 340

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 262

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 494

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 640

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 221

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 17

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 920

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 949

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 898

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 135

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 456

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 1108

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 899

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 235

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 639

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 359

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 261

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 455

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Arabidopsis thaliana sample 52

text: Arabidopsis thaliana

text: Arabidopsis thaliana


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