text: bread wheat

characteristic: common name

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000373 - Accession Name = 'Aus34245/correll*26'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34245/correll'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: tissue type

text: Aus34245 = D67.2/P66.270//AE.SQUARROSA (211)


status: PUBLIC

characteristic: SRA accession

text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000430 - Accession Name = 'Aus34270/correll*85'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34270/correll'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: Aus34270 = GARZA/BOY//AE.SQUARROSA (286)

characteristic: variety

type: has member

Eduard Akhunov

Address: 1712 Claflin Road, Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA

Fei He

FirstName: Fei

LastName: He


text: bread wheat

characteristic: common name

text: CANARY 2

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007188 - Accession Name = 'CANARY 2'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Spain

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: Iraq by Inspector General of Agriculture

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003690 - Accession Name = '76'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Iraq

text: PI 70695

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 70695

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :76;:CItr 9038;:CI 9038


characteristic: SRA accession

text: Rio Grande do Sul, Brazil by

text: bread wheat

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003402 - Accession Name = '8475-59'; Remarks = 'Entry in the 1965 ISWRN.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Trapeano/Cajeme 54'

text: 2 week old

text: spring wheat

text: Brazil

text: CItr 14371

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 14371

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :8475-59;:CI 14371


text: 1972 Macedonia by Institute for Small Grains

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004268 - Accession Name = '1656'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '40.91666667,20.76666667,725'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Macedonia

text: Lubaniste-Sv. Naum

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 378381

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 378381

text: subsp. aestivum

text: leaf


text: Washington, United States by Morris, C., USDA-ARS

text: bread wheat

text: Daws Low PPO

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004379 - Accession Name = 'Daws Low PPO'; Remarks = 'Near isogenic line of soft white winter wheat with lower levels of grain polyphenol oxidase (PPO).'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'selection from Daws'

text: 2 week old

text: spring wheat

text: USA

characteristic: geographic location (country and/or sea)

text: PI 660670

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 660670

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :Daws Low PPO;:WQL8DAWSL;USA126:NSGC 19513


text: bread wheat

characteristic: common name

text: INDIA 161

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007350 - Accession Name = 'INDIA 161'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: India

text: Sitapur;Paraspur, Misrikh, Sitapur

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

characteristic: variety


characteristic: SRA accession

text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000183 - Accession Name = 'Aus30293/annuello*13'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30293/annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: Aus30293 = CETA/AE.SQUARROSA (525)


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000057 - Accession Name = 'Aus30262/annuello*55'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30262/annuello'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: Aus30262 = DOY1/AE.SQUARROSA (333)


text: bread wheat

text: TURKESTAN W84528

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007548 - Accession Name = 'TURKESTAN W84528'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: CHINA Sh208

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007246 - Accession Name = 'CHINA Sh208'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: China

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


text: 1968 Badakhshan, Afghanistan by Bennett, E., Crop Ecology & Genetic Resources Unit

characteristic: collected by

text: bread wheat

characteristic: common name

text: FAO 26.430

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003288 - Accession Name = 'FAO 26.430'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '37.13333333,70.53333333,1200'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Afghanistan

characteristic: lat lon

text: PI 347171

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 347171

text: subsp. aestivum

characteristic: sub species

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

text: :FAO 26.430;:ICARDA-IG-90255


text: 2003 Indiana, United States by Ratcliffe, R., USDA-ARS; Ohm, H., Purdue University; Cambron, S., USDA-ARS; Patterson, F., Purdue University; Williams, C., USDA-ARS

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004540 - Accession Name = 'P921696'; Remarks = 'Soft red winter wheat with gene H31, located on chromosome 5BS close to marker Xupw4148, that confers resistance to Hessian fly (Mayetiola destructor) biotype L. CI3984, the donor of H31, has one gene for resistance to Hessian fly biotype L, determined by segregation analysis of 63 backcross F2 families in which 32 families were segregating and 31 families were susceptible, fitting a 1 gene genetic model by X2 analysis. The Hessian fly resistance of CI3984 was highly effective against Hessian fly populations collected from Maryland, Delaware, South Carolina, and Georgia, as well as biotype D in laboratory tests. This is a progeny from an F6 plant that resulted from plant selection for resistance to Hessian fly biotype L during inbreeding following the backcross to Cardinal, a Hessian fly susceptible soft red winter wheat cultivar. Typically, 15-30 progeny seedlings from F2, F3, F4, and F6 plants were infested and placed in a controlled chamber at 19 deg. C, similar to conditions described previously. Stems are hollow, anthocyanin is absent. Spikes awnless, fusiform, and lax. Glumes glabrous, long, midwide, and white at maturity. Anthers yellow. Kernels red, long, and elliptical; crease is midwide and middeep; cheeks rounded, brush mid-sized, midlong, and not collared.'; Released = '2003'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Cardinal*3/3/Knox//CI 15329/CI 3984.'

text: 2 week old

text: F

text: USA

text: PI 633876

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 633876

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: variety


characteristic: SRA accession

text: 09/17/1965 Ghowr, Afghanistan by Gray, J., Reading University

text: bread wheat

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003283 - Accession Name = '756'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '34.1,64.41666667,2499'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Afghanistan

text: Ghowr;11 km east of Qala Shaharak

characteristic: geographic location (region and locality)

text: PI 366685

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 366685

text: subsp. aestivum

characteristic: submission title

text: leaf


text: 1972 Macedonia by Institute for Small Grains

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003778 - Accession Name = '1730'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '41.35,20.86666667,878'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Macedonia

characteristic: geographic location (country and/or sea)

text: Ohrid-Kicevo

text: PI 378455

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 378455

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: common name

text: KLEIN 63

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002550 - Accession Name = 'KLEIN 63'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Argentina

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


text: 1984 California, United States by Sogetal, Inc.

characteristic: collected by

text: bread wheat

text: Hipro

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-001463 - Accession Name = 'Hipro'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Tezanos Pintos Precoz//IRN46/Ciano 67/3/Pesterboden/4/Nacozari 76'

text: 2 week old

text: spring wheat

text: USA

text: PI 601074

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 601074

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


characteristic: SRA accession

text: 11/02/1981 Darfur, Sudan by Croston, R., IBPGR; El Ahmadi, A., Plant Breeding Section

text: bread wheat

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004027 - Accession Name = '109'; Remarks = 'Local original source. Sown August, harvested November. Heads awned and awnless with white and brown glumes. Brown type less than 1 percent.'; Released = '.'; Lattitude,Longitude,Elevation = '13.08333333,24.28333333,1900'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Sudan

text: Darfur;2km west from Kelling, Jebel Marra

characteristic: lat lon

text: PI 481916

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 481916

text: subsp. aestivum

characteristic: submission identifier

text: leaf

characteristic: variety


text: 01/01/1987 Oregon, United States by Metzger, R., USDA, ARS

text: wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004431 - Accession Name = 'H86-708'; Remarks = 'Resistant to bunt (Tilletia ssp.).'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: winter wheat

text: USA

text: PI 542466

characteristic: material

text: Triticum macha

text: Triticum aestivum subsp. macha

text: USDA GRIN:PI 542466

text: subsp. macha

characteristic: submission title

text: leaf


text: 05/13/1985 Essaouira, Morocco by Guarino, L., International Plant Genetic Resources Institute

text: bread wheat

characteristic: common name

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003835 - Accession Name = '1130'; Remarks = 'Awnless'; Released = '.'; Lattitude,Longitude,Elevation = '31.21666667,-9.53333333,350'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Morocco

characteristic: geographic location (country and/or sea)

text: Essaouira;Near Tnine

characteristic: geographic location (region and locality)

text: PI 525282

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 525282

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

text: MOROCCO 33

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007651 - Accession Name = 'MOROCCO 33'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Morocco

text: Mazagan;Mazagan district

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


characteristic: SRA accession

text: bread wheat

text: ARMENIA W94373

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007789 - Accession Name = 'ARMENIA W94373'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: Tirol, Austria by Mayr, E., Lehranstalt fur Pflanzenzucht und Samenprufung. DONATED 06/16/1970 by Popow, G., Swiss Federal Research Sta. for Agronomy

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003343 - Accession Name = '69Z108.40'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '46.91666667,12.5,1253'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Austria

text: Tirol;Osttirol

characteristic: lat lon

text: PI 350766

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 350766

text: subsp. aestivum

characteristic: submission identifier

text: leaf

characteristic: variety


text: bread wheat

characteristic: common name

text: HANSEN'S 131

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002447 - Accession Name = 'HANSEN'S 131'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: F

characteristic: ecotype

text: Russia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

text: DOWNY

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002311 - Accession Name = 'DOWNY'; Remarks = 'Soft / Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

text: USA

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: Ecuador by. DONATED 01/11/1955 by Servicio Cooperativo Inter-Americano Agricultura

text: bread wheat

text: Kurtur No. 1

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001572 - Accession Name = 'Kurtur No. 1'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aguilera//Kenya/Newthatch'

text: 2 week old

text: spring wheat

text: Ecuador

text: PI 223190

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 223190

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: :Kurtur No. 1


text: 01/21/1974 Arusi, Ethiopia by International Board for Plant Genetic Resources

characteristic: collected by

text: bread wheat

text: Tucursindi

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001932 - Accession Name = 'Tucursindi'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '7.88333333,39.9,2620'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Ethiopia

text: PI 534284

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 534284

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf

text: :Tucursindi;:MG 07729;:NSL 97818


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000628 - Accession Name = 'Aus29638/2*Annuello*8'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29638/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

text: Aus29638 = ARLIN_1/AE.SQUARROSA (218)

characteristic: variety


text: bread wheat

text: IRKUTSK W43325

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002494 - Accession Name = 'IRKUTSK W43325'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: Russia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: 1968 Malmohus, Sweden by Swedish Seed Association -Svalov

text: bread wheat

text: Virgo

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004624 - Accession Name = 'Virgo'; Remarks = '.'; Released = '1968'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Demeter/Virtus//Odin'

text: 2 week old

text: winter wheat

characteristic: ecotype

text: Sweden

text: PI 414741

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 414741

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Virgo


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000074 - Accession Name = 'Aus30265/annuello*34'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30265/annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: Aus30265 = FALCIE.SQUARROSA (389)


characteristic: SRA accession

text: bread wheat

text: CHINA Sh211

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007248 - Accession Name = 'CHINA Sh211'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: China

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: 1956 Splitsko-dalmatinska, Croatia by Symon, D., Adelaide University

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003478 - Accession Name = '914'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '43.16666667,17.2,750'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Croatia

text: Splitsko-dalmatinska;22 km from Makarska, road to Dubrovnik

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 264959

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 264959

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


text: 2002 Nebraska, United States by Souza, E., University of Idaho; Graybosch, R., USDA-ARS; Baenziger, P., University of Nebraska; McVey, D., USDA, ARS; Chung, O., USDA-ARS; Berzonsky, W., North Dakota State University

text: bread wheat

characteristic: common name

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001165 - Accession Name = '99ID389'; Remarks = 'Spring habit waxy wheat (amylose-free).'; Released = '2002'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Kanto 107/MN2540/3/BaiHuo5/K94H115//IDO469.'

text: 2 week old

text: spring wheat

text: USA

text: PI 619355

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 619355

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: :99ID389;USA126:NSGC 8754

characteristic: variety


text: 02/06/1979 La Araucania, Chile by Barclay, A., USDA, ARS; Craddock, J., USDA-ARS, Plant Industry Station

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-001008 - Accession Name = '102'; Remarks = 'Aleurone white. Kernel texture hard. Awnletted, white. Chaff and straw white. Spikes erect to slightly inclined.'; Released = '.'; Lattitude,Longitude,Elevation = '-38.98333333,-73.13333333,200'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: F

characteristic: ecotype

text: Chile

text: La Araucania;3km west of Teodoro Schmidt

text: PI 436262

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 436262

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :102;:JC 0279


characteristic: SRA accession

text: bread wheat

text: TURKESTAN W84527

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007547 - Accession Name = 'TURKESTAN W84527'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Russia

characteristic: geographic location (country and/or sea)

text: Farghona;S Ferghana; flour mill, Farghona

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

text: Lincoln

text: AWCC

text: exome sequences of ExomeCapture-DAS5-LINCOLN - Accession Name = 'Lincoln'; Remarks = 'Soft / Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: winter wheat

text: USA

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000759 - Accession Name = 'Aus30261/2*Annuello*9'; Remarks = 'BC2F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30261/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: Aus30261 = ROK/KML//AE.SQUARROSA (333)


text: bread wheat

text: PETIRROJO

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002852 - Accession Name = 'PETIRROJO'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Uruguay

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


text: bread wheat

text: USSR W94457

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003176 - Accession Name = 'USSR W94457'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

characteristic: variety


text: bread wheat

text: JANG KWANG

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002505 - Accession Name = 'JANG KWANG'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: South Korea

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: Romania by I.C.C.P.T.. DONATED 10/1987 by Moseman, J., USDA-ARS

characteristic: collected by

text: bread wheat

text: Fundulea 7-71

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003943 - Accession Name = 'Fundulea 7-71'; Remarks = 'Resistance to yellow (stripe) rust.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Neuzucht/Bezostaia 1'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Romania

text: PI 519090

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 519090

text: subsp. aestivum

text: leaf

text: :Fundulea 7-71


characteristic: SRA accession

text: bread wheat

text: CHINESE 5 4

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007274 - Accession Name = 'CHINESE 5 4'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: China

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000518 - Accession Name = 'Aus34442/annuello*46'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34442/annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

characteristic: tissue type

text: Aus34442 = CETA/AE.SQUARROSA (783)


text: bread wheat

characteristic: common name

text: ACA 903B

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002017 - Accession Name = 'ACA 903B'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Argentina

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: bread wheat

text: INDIA 213

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007606 - Accession Name = 'INDIA 213'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: India

text: SIBI;MARGNZANI, SIBI

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: bread wheat

text: Cara

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-CARA - Accession Name = 'Cara'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Mexico

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

characteristic: variety


characteristic: SRA accession

text: wheat

text: GEORGIA W10107

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007824 - Accession Name = 'GEORGIA W10107'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Georgia

characteristic: material

text: Triticum compactum

text: Triticum aestivum subsp. compactum

text: subsp. compactum

text: leaf


text: wheat

text: CYPRUS KYPEROUNDA

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007826 - Accession Name = 'CYPRUS KYPEROUNDA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Cyprus

characteristic: geographic location (country and/or sea)

text: Triticum compactum

text: Triticum aestivum subsp. compactum

text: subsp. compactum

characteristic: submission title

text: leaf


text: 1972 Montenegro by Institute for Small Grains

characteristic: collected by

text: bread wheat

characteristic: common name

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004267 - Accession Name = '1596'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '43.13333333,20.51666667,508'; Ancestry = '.'

text: 2 week old

text: winter wheat

text: Montenegro

text: Novi Pazar

characteristic: lat lon

text: PI 378323

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 378323

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: Taiwan by Taichung District Agric. Imp. Station. DONATED 01/17/1962 by Taiwan Agricultural Research Institute

text: bread wheat

text: Taichung No. 2

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001895 - Accession Name = 'Taichung No. 2'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Shoawase/Saitama 27'

characteristic: description

text: 2 week old

text: spring wheat

text: Taiwan

text: PI 278740

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 278740

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :Taichung No. 2


text: 07/08/1985 Errachidia, Morocco by Guarino, L., International Plant Genetic Resources Institute

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004265 - Accession Name = '1250'; Remarks = 'Spikes thin, lax, awned. Local type'; Released = '.'; Lattitude,Longitude,Elevation = '31.78333333,-5.45,2000'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: winter wheat

text: Morocco

text: Errachidia;Ait Hani

characteristic: geographic location (region and locality)

text: PI 525317

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 525317

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


characteristic: SRA accession

text: Brabant, Belgium by Dumon, A., Station de Selection d'Heverle. DONATED 11/21/1968 by Station d'Amelioration des Plantes

text: bread wheat

text: Aga

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004670 - Accession Name = 'Aga'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Koga/Fylby'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Belgium

text: PI 338364

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 338364

text: subsp. aestivum

text: leaf

text: :Aga

characteristic: variety


text: bread wheat

characteristic: common name

text: RUSSIAN 3000

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002981 - Accession Name = 'RUSSIAN 3000'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

text: CRONOX

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002255 - Accession Name = 'CRONOX'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Argentina

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: Tirol, Austria by Mayr, E., Lehranstalt fur Pflanzenzucht und Samenprufung. DONATED 06/16/1970 by Popow, G., Swiss Federal Research Sta. for Agronomy

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001116 - Accession Name = '69Z108.1'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '47,12.45,1120'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Austria

text: Tirol;Virgen, Osttirol

characteristic: lat lon

text: PI 350727

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 350727

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


text: bread wheat

text: SKALA

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003047 - Accession Name = 'SKALA'; Remarks = 'Brown'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


characteristic: SRA accession

text: Algeria by Station Centrale d'Essais de Semences

text: bread wheat

text: Mahon Demias

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001609 - Accession Name = 'Mahon Demias'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

characteristic: ecotype

text: Algeria

text: PI 263419

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 263419

text: subsp. aestivum

text: leaf

text: :Mahon Demias


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000563 - Accession Name = 'Aus36181/annuello*18'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus36181/annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: Aus36181 = CETA/AE.SQUARROSA (386)

characteristic: variety


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000816 - Accession Name = 'Aus29682/2*Annuello*6'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29682/2*Annuello'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: Aus29682 = DOY1/AE.SQUARROSA (517)


text: Kazakhstan by. DONATED 03/14/1968 by N.I. Vavilov Institute of Plant Industry

characteristic: collected by

text: bread wheat

text: Alabasskaja

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004324 - Accession Name = 'Alabasskaja'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'selection from BG 20 = Erythrospermum 929/Lutescens 97'

text: 2 week old

text: winter wheat

text: Kazakhstan

text: PI 326301

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 326301

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: :Alabasskaja;:WIR 38238


text: Siliana, Tunisia by. DONATED 07/1972 by University of Nebraska

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004072 - Accession Name = '3144-19'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '35.81666667,9.46666667,796'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Tunisia

text: Siliana;Mansoura

characteristic: geographic location (region and locality)

characteristic: lat lon

text: CItr 15412

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 15412

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :3144-19;:CI 15412


characteristic: SRA accession

text: Guatemala by Servicio Cooperativo Inter-Americano de Agricultura

text: bread wheat

text: Criollo Santa Irene

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004373 - Accession Name = 'Criollo Santa Irene'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Guatemala

text: PI 245368

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 245368

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :Criollo Santa Irene


text: 1968 Helmand, Afghanistan by Bennett, E., Crop Ecology & Genetic Resources Unit

text: bread wheat

characteristic: common name

text: Bahri Sirhosha

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004674 - Accession Name = 'Bahri Sirhosha'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '32.41,65.09444444,3300'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Afghanistan

characteristic: geographic location (country and/or sea)

text: Helmand;Kalu

text: PI 347110

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 347110

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Bahri Sirhosha;:FAO 26.490

characteristic: variety


text: Burundi by Ingold, M., Federal Agricultural Research Station

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001007 - Accession Name = 'T-2089'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Burundi

text: PI 351870

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 351870

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000866 - Accession Name = 'Aus29668/2*Annuello*6'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29668/2*Annuello'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

text: Aus29668 = CETA/AE.SQUARROSA (661)


characteristic: SRA accession

text: bread wheat

text: CHINESE 8 4

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007276 - Accession Name = 'CHINESE 8 4'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: China

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: Jiangsu, China by Ward, R., Michigan State University; Jiang, G., Nanjing Agricultural University; Huang, D., Shanghai Academy of Agricultural Sciences; Shen, Q., Zhejiang Academy of Agricultural Sciences; Yang, Z., Anhui Academy of Agricultural Sciences; Lu, W., Jiangsu Academy of Agricultural Sciences; Shi, J., Jiangsu Academy of Agricultural Sciences; Zhu, H., Nanping Institute of Agricultural Sciences; Chen, Z., Nanjing Agricultural University. DONATED 10/26/2005 by Jiang, G., Michigan State University

text: bread wheat

text: CJ 9311

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001309 - Accession Name = 'CJ 9311'; Remarks = 'Awned, semi-dwarf and red-grained spring type with red glumes. Has a high level of resistance to Fusarium head blight (FHB or scab) caused by Fusarium graminearum. Scores for disease severity (such as number of scabby spikelets) under single-floret inoculation were consistently lower than the resistant check Sumai 3 or Ning 7840. Under a natural epidemic of scab, CJ 9311 scores for disease index were close to those for Sumai 3. Superior to Sumai 3 in the resistance to disease spread of wheat scab, and has similar comprehensive resistance to Sumai 3. Under field conditions at Nanjing, China, plant height was around 90 cm (30 cm shorter than Sumai 3). Spike length, spikelets and kernels per spike were around 11 cm, 21-22 and 38-39, respectively (10 cm, 21 and 34-36 for Sumai 3). Grains are red, oval, semi-soft and plump. 1000 kernel and volume weights were 34 g and 756 g/l, better than those of Sumai 3 (33 g and 750 g/l). Biomass per stalk, grain yield/spike and harvest index were 3.5 g, 1.4 g and 39.7%, compared to Sumai 3 (3.2 g, 1.1 g and 35.1%). Duration of growth is around 210 d in Nanjing. Was 1-2 d earlier in heading/flowering and more lodging-resistant than Sumai 3. Was moderate to rusts and powdery mildew.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Originally derived from a C3 population of scab-resistant gene pool generated by intermating among hybrids and progenies of 75 crosses with five agronomic parents (Yangmai 4, Ningmai 3, Zhemai 1, Qianjiang 1 and Wanjian 7909) crossed to each of 15 scab-resistant and/or complementary parents (Sumai 3, Ning 7840, Wangshuibai, Whengzhouhongheshang, Fanshanxiaomai, Emai 9, Zhen 7495, Jinzhou 1, Xiangmai 1, Nobeokabouzu-Komogi, Shinchunaga, Qianhuan 803, 089xAvrora, Frontana and Veery), with the aid of a dominant male-sterile gene Ta1 (ms2), and bulking the seeds from the male-sterile plants, followed by recurrent selection.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: China

text: PI 641166

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 641166

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :CJ 9311;:Changjiang 9311


text: bread wheat

characteristic: common name

text: CROATIA 9

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007295 - Accession Name = 'CROATIA 9'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: USSR W94455

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003175 - Accession Name = 'USSR W94455'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: variety


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000265 - Accession Name = 'Aus30656/yitpi*38'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30656/yitpi'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: Aus30656 = LCK59.61/AE.SQUARROSA (783)


text: Croatia by Inst. for Plant Breeding and Production

characteristic: collected by

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003477 - Accession Name = '696/70'; Remarks = 'Branched-type spikes. Branched, red awnless heads.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Croatia

text: PI 358333

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 358333

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: bread wheat

text: TRANSILVANIA

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003128 - Accession Name = 'TRANSILVANIA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Romania

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf


text: bread wheat

characteristic: common name

text: VARNA 7

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007769 - Accession Name = 'VARNA 7'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Bulgaria

text: ELENA;CONSTANTIN (Konstantin) VILLAGE, ELENA

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000071 - Accession Name = 'Aus30265/annuello*19'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30265/annuello'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30265 = FALCIE.SQUARROSA (389)


text: Madhya Pradesh, India by Ekbote, R., Department of Agriculture. DONATED 07/26/1948 by Koelz, W., USDA-Bureau of Plant Industry

text: bread wheat

text: exome sequences of ExomeCapture-WSC-8-5 - Accession Name = '9726'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '22,79,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: India

characteristic: lat lon

text: PI 166180

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: PI 166180

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: variety


text: Burundi by Ingold, M., Federal Agricultural Research Station

characteristic: collected by

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003428 - Accession Name = 'T-2094'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Burundi

text: PI 351875

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 351875

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: Colonia, Uruguay by Instituto Fitotecnico

text: bread wheat

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004217 - Accession Name = '142-929'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '38 M.A./Petirrojo'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Uruguay

text: PI 225500

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 225500

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


text: bread wheat

characteristic: common name

text: WESTBRED 911

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003232 - Accession Name = 'WESTBRED 911'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: USA

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: wheat

text: LENNINGRAD W3720

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007827 - Accession Name = 'LENNINGRAD W3720'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum compactum

text: Triticum aestivum subsp. compactum

text: subsp. compactum

characteristic: submission identifier

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000260 - Accession Name = 'Aus30638/yitpi*47'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30638/yitpi'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: Aus30638 = YAV_2/TEZ//AE.SQUARROSA (457)

characteristic: variety


text: bread wheat

text: BUCK RANQUEL

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002192 - Accession Name = 'BUCK RANQUEL'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Argentina

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: England, United Kingdom by ICI Seeds UK Limited

characteristic: collected by

text: bread wheat

text: Colonel

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004156 - Accession Name = 'Colonel'; Remarks = 'Breadmaking, semidwarf, semi-alternative, winter variety. Vernalization requirement and winterhardiness low. Grain red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Guardian sib/Moulin'

text: 2 week old

text: spring wheat

text: United Kingdom

text: PI 547263

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 547263

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :Colonel


text: bread wheat

text: FLAMURA 80

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002385 - Accession Name = 'FLAMURA 80'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: winter wheat

text: Romania

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


text: Malmohus, Sweden by W. Weibull Seed Company

text: bread wheat

characteristic: common name

text: Karn I

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001544 - Accession Name = 'Karn I'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Weibull 8388/Weibull 8244'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Sweden

text: PI 320479

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 320479

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :Karn I


text: Lisboa, Portugal by Instituto Superior de Agronomia. DONATED 09/28/1950 by Estacao de Melhoramento de Plantas

text: bread wheat

text: Serrano

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001847 - Accession Name = 'Serrano'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '39,-9.13333333,.'; Ancestry = 'Anafil/Ribeiro'

characteristic: description

text: 2 week old

text: spring wheat

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: lat lon

text: PI 192014

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 192014

text: subsp. aestivum

characteristic: submission description

text: leaf


text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007221 - Accession Name = 'Aus27398'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Mexico

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf


characteristic: SRA accession

text: Valle, Colombia by International Maize & Wheat Improvement Center. DONATED 10/1987 by Moseman, J., USDA-ARS

text: bread wheat

text: VI 121.2.13B.2T.2B

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-001955 - Accession Name = 'VI 121.2.13B.2T.2B'; Remarks = 'Resistance to yellow (stripe) rust and stem rust.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Yaqui/Kenya 58//Newthatch/3/2*Bonza'

text: 2 week old

text: spring wheat

text: Colombia

text: PI 519489

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 519489

text: subsp. aestivum

text: leaf

text: :VI 121.2.13B.2T.2B

characteristic: variety


text: bread wheat

text: VIZCAYA 19

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007572 - Accession Name = 'VIZCAYA 19'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Spain

text: BISCAY;Rigoitia (PIZOITIA), BISCAY

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: common name

text: USSR W61101

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003172 - Accession Name = 'USSR W61101'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: Japan by. DONATED 05/1951 by Heyne, E., Kansas State University. DONATED 06/13/1951 by Coffman, E., Agricultural Division

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003726 - Accession Name = '3'; Remarks = 'resistant to leaf rust'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Japan

characteristic: geographic location (country and/or sea)

text: PI 197109

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 197109

text: subsp. aestivum

text: leaf


text: bread wheat

text: POLAND 9

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002878 - Accession Name = 'POLAND 9'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Poland

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


characteristic: SRA accession

text: bread wheat

text: CHINESE 3 4

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007272 - Accession Name = 'CHINESE 3 4'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: China

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

text: VARNA 14

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007763 - Accession Name = 'VARNA 14'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Bulgaria

text: RAZGRAD;KONSTANDENEZ VILLAGE, ROUSTCHOUK DISTRICT

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000397 - Accession Name = 'Aus34253/correll*55'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34253/correll'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: tissue type

text: Aus34253 = D67.2/P66.270//AE.SQUARROSA (220)


text: bread wheat

text: BJELOKOLOOKA NO 2999

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002144 - Accession Name = 'BJELOKOLOOKA NO 2999'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003725 - Accession Name = '17'; Remarks = 'reisstant to snow mold'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Japan

text: PI 197115

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 197115

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: bread wheat

text: EGA Wylie

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-EGA-WYLIE - Accession Name = 'EGA Wylie'; Remarks = '.'; Released = '2004'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: AWCC:.

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


text: 1969 Borno, Nigeria by Andrews, D., Institute for Agricultural Research. DONATED 11/20/1973 by Zeven, A., Agricultural University

text: bread wheat

text: Dikwa 2

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003881 - Accession Name = 'Dikwa 2'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '12.03333333,13.91666667,298'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Nigeria

text: Borno;Dikwa

characteristic: lat lon

text: PI 384347

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 384347

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Dikwa 2


text: 12/03/1980 Yemen by Sackville-Hamilton, N., International Board of Plant Genetic Resources; Yemen Ministry of Agriculture

text: bread wheat

characteristic: common name

text: Bohr Gamh

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001244 - Accession Name = 'Bohr Gamh'; Remarks = 'Collected by N. R. Sackville-Hamilton and H. A. Ashwal.'; Released = '.'; Lattitude,Longitude,Elevation = '16.9,43.68333333,1920'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Yemen

text: Al Sefra, 10km W of Sa'dah, Sa'dah Dist., Sa'dah Province

characteristic: geographic location (region and locality)

text: PI 462106

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 462106

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :Bohr Gamh;:162

characteristic: variety


text: Huesca, Spain by. DONATED 09/28/1950 by Estacion Experimental de Aula Dei

characteristic: collected by

text: bread wheat

text: Ballobar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004020 - Accession Name = 'Ballobar'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '42.16666667,-0.16666667,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Spain

characteristic: geographic location (country and/or sea)

text: PI 191014

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 191014

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: bread wheat

text: AFGHANISTAN 93

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007117 - Accession Name = 'AFGHANISTAN 93'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Afghanistan

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: leaf


text: bread wheat

text: WHIT

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003234 - Accession Name = 'WHIT'; Remarks = 'Soft / White'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: USA

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: submission identifier

text: leaf


text: Sicily, Italy by Stazione Sperimentale di Granicoltura. DONATED 03/05/1947 by Germann, R., Agricultural Section

text: bread wheat

characteristic: common name

text: Romano

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004695 - Accession Name = 'Romano'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '37.75,14.25,.'; Ancestry = '.'

text: 2 week old

text: F

text: Italy

characteristic: lat lon

text: PI 157949

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 157949

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Romano


text: 11/1954 East Azerbaijan, Iran by Smith, E., USDA-ARS

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003641 - Accession Name = '1668'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '38.08333333,46.3,1399'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Iran

text: East Azerbaijan;Dept. of Agriculture, Tabriz

characteristic: geographic location (region and locality)

text: PI 222677

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 222677

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: variety


characteristic: SRA accession

text: 05/16/1968 England, United Kingdom by University of Reading

text: wheat

text: Echinatum

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004158 - Accession Name = 'Echinatum'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: PI 330556

text: Triticum sphaerococcum

text: Triticum aestivum subsp. sphaerococcum

text: USDA GRIN:PI 330556

text: subsp. sphaerococcum

text: leaf

characteristic: tissue type


text: New South Wales, Australia by Wenholz, H., Department of Agriculture

text: bread wheat

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003318 - Accession Name = '508'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Hope/Yandilla King'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: PI 117731

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 117731

text: subsp. aestivum

characteristic: submission description

text: leaf


text: bread wheat

characteristic: common name

text: HALDONI

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002443 - Accession Name = 'HALDONI'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission identifier

text: leaf


text: bread wheat

text: Vorobey

text: exome sequences of ExomeCapture-WSC-2-4 - Accession Name = 'Vorobey'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Mexico

text: Vorobey

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: Vorobey

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

text: VARNA 6

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007766 - Accession Name = 'VARNA 6'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Bulgaria

text: ELENA;BEBROVO VILLAGE, ELENA

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: variety


characteristic: SRA accession

text: Luzon, Philippines by Escuro, P., College of Agriculture

characteristic: collected by

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-001051 - Accession Name = '18127'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '16.33333333,121.3333333,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Philippines

characteristic: lat lon

text: PI 378915

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 378915

text: subsp. aestivum

text: leaf


text: Florida, United States by Barnett, R., University of Florida

text: bread wheat

text: FL 8150-J9-K1

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004408 - Accession Name = 'FL 8150-J9-K1'; Remarks = 'Plant height short, bearded, white chaff'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Coker 762/FL7271A22-4-2-B1-G3'

text: 2 week old

characteristic: dev stage

text: winter wheat

text: USA

characteristic: geographic location (country and/or sea)

text: PI 578040

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 578040

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: tissue type

text: :FL 8150-J9-K1


text: 07/05/1985 Morocco by Guarino, L., International Plant Genetic Resources Institute

text: bread wheat

characteristic: common name

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003838 - Accession Name = '1198a'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '30,-9,1400'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Morocco

text: Khar-Fifilo

text: PI 525440

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 525440

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission description

text: leaf


text: Portalegre, Portugal by. DONATED 12/29/1949 by Estacao Agronomica Nacional

text: bread wheat

text: Ruivo

text: exome sequences of ExomeCapture-WSC-8-2 - Accession Name = 'Ruivo'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '39.11666667,-7.28333333,270'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Portugal

text: Portalegre;Arronches

characteristic: geographic location (region and locality)

text: PI 185715

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: PI 185715

text: subsp. aestivum

characteristic: sub species

characteristic: submission identifier

characteristic: submission title

text: leaf


characteristic: SRA accession

text: bread wheat

text: SALAMANCA 3

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007520 - Accession Name = 'SALAMANCA 3'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Spain

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: Japan by. DONATED 01/06/1963 by Instytut Hodowli I Aklimatyzacji Roslin

characteristic: collected by

text: bread wheat

text: Akakkowa Aka

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003729 - Accession Name = 'Akakkowa Aka'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Japan

characteristic: geographic location (country and/or sea)

text: PI 285896

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 285896

text: subsp. aestivum

text: leaf

text: :Akakkowa Aka


text: bread wheat

characteristic: common name

text: SALONIKA 12

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007523 - Accession Name = 'SALONIKA 12'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Greece

text: Salonica;Florina, Tessaloniki (Salonica)

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: New South Wales, Australia by Wenholz, H., Department of Agriculture

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003319 - Accession Name = '5135'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Kenya/Florence/Dundee'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: PI 117634

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 117634

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission description

text: leaf


text: Valle, Colombia by International Maize & Wheat Improvement Center. DONATED 10/1987 by Moseman, J., USDA-ARS

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003470 - Accession Name = '13895-5T-1B-1T'; Remarks = 'Resistance to yellow (stripe) rust.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Salles//McMurachy/Mayo/3/3*Bonza'

text: 2 week old

text: spring wheat

text: Colombia

text: PI 519488

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 519488

text: subsp. aestivum

characteristic: sub species

characteristic: submission identifier

characteristic: submission title

text: leaf

text: :13895-5T-1B-1T;:FAO 26.029