text: bread wheat

text: CHINA Sh241

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007256 - Accession Name = 'CHINA Sh241'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: China

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


status: PUBLIC

characteristic: SRA accession

text: bread wheat

characteristic: common name

text: PERSIA 69

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007470 - Accession Name = 'PERSIA 69'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Iran

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

characteristic: submission title

text: leaf

characteristic: tissue type

characteristic: variety

type: has member

Eduard Akhunov

Address: 1712 Claflin Road, Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA

Fei He

FirstName: Fei

LastName: He


text: 1960 Northern Areas, Pakistan by Harlan, J., USDA-ARS

characteristic: collected by

text: bread wheat

text: Dirk

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001341 - Accession Name = 'Dirk'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '35.7,73.9,3188'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Pakistan

text: Northern Areas;Juglate farm

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 270045

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 270045

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: bread wheat

characteristic: common name

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000194 - Accession Name = 'Aus30296/annuello*2'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30296/annuello'

characteristic: description

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30296 = DOY1/AE.SQUARROSA (1016)


text: 1946 Colonia, Uruguay by Instituto Fitotecnico

text: bread wheat

text: Petirrojo

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001755 - Accession Name = 'Petirrojo'; Remarks = '.'; Released = '1946'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Petiso outcross'

text: 2 week old

text: spring wheat

text: Uruguay

characteristic: geographic location (country and/or sea)

text: PI 225371

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 225371

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000793 - Accession Name = 'Aus30287/2*Annuello*3'; Remarks = 'BC2F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30287/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf

characteristic: tissue type

text: Aus30287 = STY-US/CELTA//PALS/3/SRN_5/4/AE.SQUARROSA (418)


text: 1961 Wisconsin, United States by University of Wisconsin; Shands, R., USDA-ARS

characteristic: collected by

text: bread wheat

text: Lathrop

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001582 - Accession Name = 'Lathrop'; Remarks = 'Hard red spring wheat. Carries Hessian fly resistance.'; Released = '1961'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Henry*7/PI 94587 '

text: 2 week old

characteristic: dev stage

text: spring wheat

text: USA

text: CItr 13457

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 13457

text: subsp. aestivum

text: leaf

text: :Lathrop;:Wisc. 253;:CI 13457

characteristic: variety


characteristic: SRA accession

text: bread wheat

characteristic: common name

text: IRAQ 37

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007640 - Accession Name = 'IRAQ 37'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Iraq

text: Tigris;Tigris region

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000668 - Accession Name = 'Aus30305/2*Annuello*8'; Remarks = 'BC2F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30305/2*Annuello'

characteristic: description

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30305 = CPI/GEDIZ/3/GOO//JO/CRA/4/AE.SQUARROSA (184)


text: Belgium by Station d'Amelioration des Plantes. DONATED 09/28/1950 by Estacion Experimental de Aula Dei

text: wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003357 - Accession Name = '2531'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Paix 13/Oscar Benoist'

text: 2 week old

text: spring wheat

text: Belgium

text: PI 190982

text: Triticum sphaerococcum

characteristic: organism

text: Triticum aestivum subsp. sphaerococcum

characteristic: scientific name

text: USDA GRIN:PI 190982

characteristic: specimen voucher

text: subsp. sphaerococcum

characteristic: sub species

text: leaf


text: bread wheat

text: AVRORA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002073 - Accession Name = 'AVRORA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf

characteristic: tissue type


text: bread wheat

text: SIBERIA W4134

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007536 - Accession Name = 'SIBERIA W4134'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: variety


characteristic: SRA accession

text: Netherlands by Cebeco Zaden B.V.. DONATED 09/30/1968 by Rothwell Plant Breeders Ltd.

characteristic: collected by

text: bread wheat

characteristic: common name

text: Mildress

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004495 - Accession Name = 'Mildress'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Riebesel 57-41/3*Heines VII'

text: 2 week old

text: spring wheat

text: Netherlands

text: PI 337604

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 337604

text: subsp. aestivum

text: leaf

text: :Mildress


text: Europe by

text: bread wheat

text: No name 5 - Europe

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004508 - Accession Name = 'No name 5 - Europe'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: W-S

characteristic: ecotype

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: PI 254059

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 254059

text: subsp. aestivum

text: leaf


text: Java, Indonesia by United States Operations Mission - Djakarta

text: bread wheat

text: No. 6

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001690 - Accession Name = 'No. 6'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '-8,113,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Indonesia

text: Java;East Java

characteristic: lat lon

text: PI 414975

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 414975

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: :No. 6


text: Tolbukhin, Bulgaria by Institute for Wheat & Sunflower Research

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003418 - Accession Name = '5946-2'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Bulgaria

text: PI 564349

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 564349

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: bread wheat

text: KLEIN FORTIN

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002568 - Accession Name = 'KLEIN FORTIN'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: Argentina

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: bread wheat

characteristic: common name

text: UKRAINE W94472

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003162 - Accession Name = 'UKRAINE W94472'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: Zaragoza, Spain by Estacion Experimental de Aula Dei

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004010 - Accession Name = '2083'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Candeal/Catalan 17'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Spain

characteristic: geographic location (country and/or sea)

text: PI 191039

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 191039

text: subsp. aestivum

text: leaf


text: bread wheat

text: Ava

text: AVS

text: exome sequences of ExomeCapture-DAS5-AVA - Accession Name = 'Ava'; Remarks = 'Hard white sptring wheat'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: AVS:.

text: subsp. aestivum

text: leaf


text: bread wheat

text: AZERBAJDZANSKAJA 2

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002075 - Accession Name = 'AZERBAJDZANSKAJA 2'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf


text: bread wheat

text: exome sequences of ExomeCapture-WSC-3-14 - Accession Name = 'kern+yr5+yr15+2ns+gpc'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Breeding line'

text: 2 week old

text: spring wheat

text: USA

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf


characteristic: SRA accession

text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000311 - Accession Name = 'Aus33405/yitpi*15'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33405/yitpi'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

characteristic: tissue type

text: Aus33405 = GAE.SQUARROSA (285)


text: PRE 1930 Croatia by Watkins, A., University of Cambridge

text: bread wheat

characteristic: common name

text: Croatia 1

text: exome sequences of ExomeCapture-Cltr-11223 - Accession Name = 'Croatia 1'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Croatia

text: CItr 11223

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: CItr 11223

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: :Croatia 1;:CI 11223

characteristic: variety


text: England, United Kingdom by Gorrie, Annat Garden. DONATED 07/19/1919 by Bone, J.

characteristic: collected by

text: bread wheat

text: Gold Drop

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004425 - Accession Name = 'Gold Drop'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: winter wheat

text: United Kingdom

text: CItr 6316

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 6316

text: subsp. aestivum

text: leaf

text: :Gold Drop;:CI 6316


text: bread wheat

text: CHINA 20

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007212 - Accession Name = 'CHINA 20'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: China

characteristic: geographic location (country and/or sea)

text: PEKING;PEKING

characteristic: geographic location (region and locality)

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000916 - Accession Name = 'Aus29640/2*Annuello*6'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29640/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus29640 = DVERD_2/AE.SQUARROSA (247)


characteristic: SRA accession

text: bread wheat

text: BOBWHITE MPB26RH

text: AVS

text: exome sequences of ExomeCapture-DAS5-BOBWHITE - Accession Name = 'BOBWHITE MPB26RH'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Mexico

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: AVS:.

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf


text: bread wheat

characteristic: common name

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000205 - Accession Name = 'Aus30297/annuello*36'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30297/annuello'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: Aus30297 = DOY1/AE.SQUARROSA (1024)


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000551 - Accession Name = 'Aus36177/annuello*10'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus36177/annuello'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus36177 = CPI/GEDIZ/3/GOO//JO/CRA/4/AE.SQUARROSA (273)

characteristic: variety


text: bread wheat

text: Alpowa

text: AWCC

text: exome sequences of ExomeCapture-DAS5-ALPOWA - Accession Name = 'Alpowa'; Remarks = 'Soft / White'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: USA

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: CHINA 19

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007210 - Accession Name = 'CHINA 19'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: China

text: PEKING;Yuan Hsing Sheng General Store, Peking

characteristic: geographic location (region and locality)

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: NAVARRE 59

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007452 - Accession Name = 'NAVARRE 59'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Spain

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf


characteristic: SRA accession

text: bread wheat

text: exome sequences of ExomeCapture-WSC-3-13 - Accession Name = 'rsl5+yr5+yr15+1+gpc'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Breeding line'

text: 2 week old

text: spring wheat

text: USA

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


text: Kyrgyzstan by. DONATED 07/14/1977 by N.I. Vavilov Institute of Plant Industry

characteristic: collected by

text: bread wheat

characteristic: common name

text: Przevalskaja

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004555 - Accession Name = 'Przevalskaja'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Teploklyuchenskaja/Felix'

text: 2 week old

text: winter wheat

text: Kyrgyzstan

text: PI 418571

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 418571

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission title

text: leaf

text: :Przevalskaja;:WIR 48668


text: bread wheat

text: GRAZUCAJ

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002431 - Accession Name = 'GRAZUCAJ'; Remarks = 'White'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: tissue type


text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007692 - Accession Name = 'Aus28164'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Zimbabwe

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: Spain by Consiglio Nazionale delle Ricerche

text: bread wheat

text: MG 27174

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004493 - Accession Name = 'MG 27174'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

text: Spain

text: PI 469020

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 469020

text: subsp. aestivum

text: leaf

text: :MG 27174


characteristic: SRA accession

text: 1988 Yemen by Guarino, L., International Plant Genetic Resources Institute

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004253 - Accession Name = '1164'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '15.5,47.5,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Yemen

text: PDR South Yemen

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 574371

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 574371

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :1164;:NSGC 1400


text: Namur, Belgium by Station d'Amelioration des Plantes. DONATED 1968 by

characteristic: collected by

text: bread wheat

characteristic: common name

text: Prima

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004553 - Accession Name = 'Prima'; Remarks = 'Entry in the 1965 IWWRN.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Pansar III//Lingee XVIII de Tresor/Italo Giglioli'

text: 2 week old

text: F

text: Belgium

text: CItr 14351

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 14351

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :Prima;:D.I.V. 5192;:CI 14351


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000443 - Accession Name = 'Aus34278/correll*32'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34278/correll'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: tissue type

text: Aus34278 = 68.111/RGB-U//WARD/3/AE.SQUARROSA (328)


text: bread wheat

text: exome sequences of ExomeCapture-WSC-1-8 - Accession Name = 'W7984'; Remarks = 'Primary synthetic'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Mexico

characteristic: geographic location (country and/or sea)

text: CYMMIT

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


characteristic: SRA accession

text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000496 - Accession Name = 'Aus34436/annuello*4'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34436/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: Aus34436 = DOY1/AE.SQUARROSA (511)


text: 11/17/1984 Georgia by Hanelt, P., Institut fur Pflanzengenetik; Kruse, J., Botanical Institute

characteristic: collected by

text: bread wheat

characteristic: common name

text: AW 6637A/87

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003570 - Accession Name = 'AW 6637A/87'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '43,42.61666667,1466'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Georgia

text: Botanical Institute, Latali, southwest of Mestia, Rayon Mestia (Ober-Svanetien)

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 572661

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 572661

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :AW 6637A/87;:SN-Z32a;:NSGC 364


text: bread wheat

text: KLEIN ESCORPION

characteristic: cultivar

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002566 - Accession Name = 'KLEIN ESCORPION'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Argentina

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

characteristic: submission identifier

text: leaf


text: 09/26/1965 Ghowr, Afghanistan by Gray, J., Reading University

text: bread wheat

text: exome sequences of ExomeCapture-WSC-4-9 - Accession Name = '1150'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '34.51666667,66.31666667,2804'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Afghanistan

characteristic: geographic location (country and/or sea)

text: Ghowr;3 km east of Qala Sakawa

text: PI 366905

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: PI 366905

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

characteristic: submission title

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: bread wheat

text: ALICANTE 3

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007127 - Accession Name = 'ALICANTE 3'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Spain

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf

characteristic: variety


text: Spain by. DONATED 09/27/1949 by Estacao Agronomica Nacional

characteristic: collected by

text: bread wheat

characteristic: common name

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004012 - Accession Name = '3CX3C'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Spain

text: PI 184602

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 184602

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


text: Erevan, Armenia by. DONATED 11/20/1930 by Dickson, J., USDA-Bureau of Plant Industry

text: bread wheat

characteristic: cultivar

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003308 - Accession Name = '66BSR'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '40.18333333,44.5,1011'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Armenia

text: Erevan;Erivan

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 94380

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 94380

text: subsp. aestivum

characteristic: sub species

text: leaf


text: bread wheat

text: Espada

text: AWCC

text: exome sequences of ExomeCapture-DAS5-ESPADA - Accession Name = 'Espada'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


characteristic: SRA accession

text: bread wheat

text: POLAND 12

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002864 - Accession Name = 'POLAND 12'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000250 - Accession Name = 'Aus30635/yitpi*7'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30635/yitpi'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf

text: Aus30635 = GAE.SQUARROSA (408)

characteristic: variety


text: bread wheat

text: RUSSIAN 1

characteristic: cultivar

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002970 - Accession Name = 'RUSSIAN 1'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000442 - Accession Name = 'Aus34278/correll*29'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34278/correll'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus34278 = 68.111/RGB-U//WARD/3/AE.SQUARROSA (328)


text: Lima, Peru by Programa Cooperativo de Experimentacion Agropecuaria

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003904 - Accession Name = '20B-55'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Marikenya/Linea G'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Peru

text: PI 232798

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 232798

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: Greece by. COLLECTED Former Soviet Union by. DONATED 11/20/1930 by Dickson, J., USDA-Bureau of Plant Industry

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003594 - Accession Name = '403'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Greece

text: PI 94570

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 94570

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

characteristic: submission identifier

text: leaf


text: bread wheat

text: DAN

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002267 - Accession Name = 'DAN'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: F

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

characteristic: submission title

text: leaf


text: Kyoto, Japan by. DONATED 09/12/1973 by Osorio, E., Universidade Federal Pelotas

text: bread wheat

characteristic: common name

text: Inayama

text: exome sequences of ExomeCapture-WSC-4-8 - Accession Name = 'Inayama'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '35.08333333,135.75,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Japan

characteristic: lat lon

text: PI 382150

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: PI 382150

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :Inayama


text: bread wheat

text: POLAND 1

characteristic: cultivar

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002862 - Accession Name = 'POLAND 1'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Poland

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf

characteristic: variety


text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007151 - Accession Name = 'Aus27325'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Canada

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf


characteristic: SRA accession

text: Morocco by. DONATED 12/15/1949 by Estacao Agronomica Nacional

characteristic: collected by

text: bread wheat

text: Bic 386

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003849 - Accession Name = 'Bic 386'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Morocco

text: PI 185358

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 185358

text: subsp. aestivum

text: leaf

text: :Bic 386;:2954


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000191 - Accession Name = 'Aus30296/annuello*1'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30296/annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: Aus30296 = DOY1/AE.SQUARROSA (1016)


text: Saudi Arabia by Seed Exchange Office

text: bread wheat

characteristic: common name

text: Hallany

text: exome sequences of ExomeCapture-Cltr-15144 - Accession Name = 'Hallany'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Saudi Arabia

text: CItr 15144

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: CItr 15144

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Hallany;:FAO 25.225;:CI 15144


text: 1972 Fukuoka, Japan by. DONATED 08/31/1978 by Fukunaga, K., Central Agricultural Experiment Station

text: bread wheat

text: Sakigake Komugi

characteristic: cultivar

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-001830 - Accession Name = 'Sakigake Komugi'; Remarks = '.'; Released = '1972'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Danchikomugi/Chugoku 81'

text: 2 week old

text: spring wheat

text: Japan

text: PI 427285

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 427285

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :Sakigake Komugi;:Komugi Nourin 112;:Norin 112;:Saikai 121


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000278 - Accession Name = 'Aus33377/yitpi*31'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33377/yitpi'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf

text: Aus33377 = CROC_1/AE.SQUARROSA (333)

characteristic: variety


characteristic: SRA accession

text: bread wheat

text: FAVORITO

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002370 - Accession Name = 'FAVORITO'; Remarks = 'Tan'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Argentina

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf


text: England, United Kingdom by Plant Breeding Institute. DONATED 08/19/1970 by Popow, G., Swiss Federal Research Sta. for Agronomy

characteristic: collected by

text: dinkel wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004147 - Accession Name = '69Z5.194'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: United Kingdom

text: PI 355704

text: Triticum spelta

text: Triticum aestivum subsp. spelta

text: USDA GRIN:PI 355704

text: subsp. spelta

text: leaf


text: Lima, Peru by Programa Cooperativo de Experimentacion Agropecuaria

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003908 - Accession Name = '31B-55'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Klein 40 C 9606/Industrial Argentino'

text: 2 week old

text: spring wheat

text: Peru

characteristic: geographic location (country and/or sea)

text: PI 232810

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 232810

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

text: leaf


text: bread wheat

characteristic: common name

text: NAVARRE 53

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007451 - Accession Name = 'NAVARRE 53'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Spain

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: bread wheat

text: Correll

characteristic: cultivar

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-CORRELL - Accession Name = 'Correll'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

text: RED EGYPTIAN

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002920 - Accession Name = 'RED EGYPTIAN'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Egypt

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007705 - Accession Name = 'Aus28177'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Brazil

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

characteristic: variety


text: East Azerbaijan, Iran by FAO

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003654 - Accession Name = '5466'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '38.41666667,47.11666667,1500'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Iran

text: East Azerbaijan;Ahar

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 243727

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 243727

text: subsp. aestivum

characteristic: sub species

text: leaf


text: PRE 1930 Lebanon by Watkins, A., University of Cambridge. DONATED 01/11/1962 by Dept. of Scientific & Industrial Res.

text: bread wheat

characteristic: common name

text: Beyrouth 3

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004337 - Accession Name = 'Beyrouth 3'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

characteristic: ecotype

text: Lebanon

characteristic: geographic location (country and/or sea)

text: PI 278533

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 278533

text: subsp. aestivum

characteristic: submission description

text: leaf

text: :Beyrouth 3


text: bread wheat

text: AFGHANISTAN 52

characteristic: cultivar

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007048 - Accession Name = 'AFGHANISTAN 52'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Afghanistan

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf


characteristic: SRA accession

text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007695 - Accession Name = 'Aus28167'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: France

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

text: AFGHANISTAN 53

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007049 - Accession Name = 'AFGHANISTAN 53'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Afghanistan

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000503 - Accession Name = 'Aus34438/annuello*19'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34438/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus34438 = CPI/GEDIZ/3/GOO//JO69/CRA/4/AE.SQUARROSA (633)


text: bread wheat

text: ODESSA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002819 - Accession Name = 'ODESSA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000638 - Accession Name = 'Aus29667/2*Annuello*8'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29667/2*Annuello'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus29667 = SCOOP_1/AE.SQUARROSA (634)


text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000145 - Accession Name = 'Aus30278/annuello*22'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30278/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: leaf

text: Aus30278 = GAE.SQUARROSA (268)


text: bread wheat

text: GIRCA 0274

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002409 - Accession Name = 'GIRCA 0274'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000121 - Accession Name = 'Aus30272/annuello*13'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30272/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

characteristic: submission title

text: leaf

text: Aus30272 = DOY1/AE.SQUARROSA (177)


characteristic: SRA accession

text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000202 - Accession Name = 'Aus30297/annuello*2'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30297/annuello'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30297 = DOY1/AE.SQUARROSA (1024)


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000446 - Accession Name = 'Aus34278/correll*46'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34278/correll'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: Aus34278 = 68.111/RGB-U//WARD/3/AE.SQUARROSA (328)


text: Malmohus, Sweden by Swedish Seed Association -Svalov. DONATED 09/28/1950 by Estacao de Melhoramento de Plantas

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004036 - Accession Name = '2181A'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Kron/Standard'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Sweden

text: PI 192595

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 192595

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: common name

text: SKOROSPELKA 36

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003050 - Accession Name = 'SKOROSPELKA 36'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: variety


text: Libya by Director of Economic & Financial Affairs

text: bread wheat

text: Triminia

text: exome sequences of ExomeCapture-PI-54431 - Accession Name = 'Triminia'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Libya

characteristic: geographic location (country and/or sea)

text: PI 54431

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: PI 54431

text: subsp. aestivum

text: leaf

text: :Triminia;:CItr 6806;:AUS 7234;:CI 6806


text: New Zealand by Dept. of Scientific & Industrial Res.

text: bread wheat

text: Sensation

characteristic: cultivar

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004579 - Accession Name = 'Sensation'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

text: New Zealand

text: PI 283866

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 283866

text: subsp. aestivum

characteristic: submission description

text: leaf

text: :Sensation


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000192 - Accession Name = 'Aus30296/annuello*13'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30296/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf

text: Aus30296 = DOY1/AE.SQUARROSA (1016)


characteristic: SRA accession

text: Sudan by. DONATED 1971 by Seed Exchange Office

text: bread wheat

text: Hudeiba 154

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001470 - Accession Name = 'Hudeiba 154'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Sudan

text: CItr 15185

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:CItr 15185

text: subsp. aestivum

text: leaf

text: :Hudeiba 154;:FAO 25.177;:CI 15185


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000225 - Accession Name = 'Aus30301/annuello*20'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30301/annuello'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: Aus30301 = CETA/AE.SQUARROSA (1027)


text: 1963 Cundinamarca, Colombia by Instituto Colombiano Agropecuario. DONATED 12/08/1969 by Ingold, M., Federal Agricultural Research Station

characteristic: collected by

text: bread wheat

characteristic: common name

text: Napo 63

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001666 - Accession Name = 'Napo 63'; Remarks = '.'; Released = '1963'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Frocor//Frontana/Yaqui 48/3/Narino sib'

text: 2 week old

text: spring wheat

text: Colombia

text: PI 352190

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 352190

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

characteristic: tissue type

text: :Napo 63;:T-2623


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000146 - Accession Name = 'Aus30278/annuello*23'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30278/annuello'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: Aus30278 = GAE.SQUARROSA (268)

characteristic: variety


text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000316 - Accession Name = 'Aus33405/yitpi*34'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33405/yitpi'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus33405 = GAE.SQUARROSA (285)


text: bread wheat

text: LEON 15

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007643 - Accession Name = 'LEON 15'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Spain

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: leaf


characteristic: SRA accession

text: bread wheat

text: KLEIN DON ENRIQUE

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002565 - Accession Name = 'KLEIN DON ENRIQUE'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Argentina

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf


text: Former Soviet Union by. COLLECTED Israel by. DONATED 11/20/1930 by Dickson, J., USDA-Bureau of Plant Industry

text: bread wheat

text: exome sequences of ExomeCapture-PI-94567 - Accession Name = '399'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Israel

text: PI 94567

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: PI 94567

text: subsp. aestivum

text: leaf


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000339 - Accession Name = 'Aus33410/yitpi*50'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33410/yitpi'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: Aus33410 = DOY1/AE.SQUARROSA (372)


text: Norway by Vlk, K., Agricultural College of Norway. DONATED 08/16/1950 by Strand, E., Agricultural College of Norway

characteristic: collected by

text: bread wheat

text: Snogg

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001859 - Accession Name = 'Snogg'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Norway

text: PI 190451

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 190451

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :Snogg


text: bread wheat

text: NAVARRE 71

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007454 - Accession Name = 'NAVARRE 71'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Spain

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: variety


text: 1960 Harer, Ethiopia by Harlan, J., USDA-ARS

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003524 - Accession Name = '1864'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '9.31666667,42.11666667,1935'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: Harer;Harar

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 273990

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 273990

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: bread wheat

text: INDIA 114

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007585 - Accession Name = 'INDIA 114'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: India

text: SIKKIM;SIKKIM

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf


text: bread wheat

characteristic: common name

text: Hartog

text: AWCC

text: exome sequences of ExomeCapture-DAS5-HARTOG - Accession Name = 'Hartog'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


text: bread wheat

text: RYSELKA

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002998 - Accession Name = 'RYSELKA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Poland

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: tissue type


text: bread wheat

text: YENISEI W43319

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003243 - Accession Name = 'YENISEI W43319'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

characteristic: variety


characteristic: SRA accession

text: Central Bohemia, Czech Republic by Selgen Ltd.. DONATED 02/23/1993 by Stehno, Z., Research Inst. of Crop Production

characteristic: collected by

text: bread wheat

text: Zdar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004638 - Accession Name = 'Zdar'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Caribo/Fakir'

text: 2 week old

text: winter wheat

text: Czech Republic

text: PI 584795

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 584795

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: :Zdar;:NSGC 1862


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000037 - Accession Name = 'Aus29663/yitpi*31'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29663/yitpi'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: Aus29663 = CETA/AE.SQUARROSA (895)


text: emmer wheat

characteristic: common name

text: GERMANY W94662

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007811 - Accession Name = 'GERMANY W94662'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Germany

text: Triticum turgidum subsp. dicoccum

text: Triticum turgidum subsp. dicoccon

text: subsp. dicoccon

characteristic: submission title

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000140 - Accession Name = 'Aus30274/annuello*76'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30274/annuello'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: Aus30274 = SCA/AE.SQUARROSA (248)


text: bread wheat

text: YENISEI W43320

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003244 - Accession Name = 'YENISEI W43320'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf


text: bread wheat

text: PERSIA 3

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007697 - Accession Name = 'PERSIA 3'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Iran

text: Tehran;Zarand, 95 miles S Tehran

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: Nebraska, United States by Graybosch, R., USDA-ARS

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004529 - Accession Name = 'NWX008094'; Remarks = 'Winter habit waxy wheat (amylose-free).'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Bai Huo Mai/Ike'

text: 2 week old

text: F

text: USA

characteristic: geographic location (country and/or sea)

text: PI 619381

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 619381

text: subsp. aestivum

text: leaf

text: :NWX008094;USA126:NSGC 8780

characteristic: variety


text: Lima, Peru by Programa Cooperativo de Experimentacion Agropecuaria

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003905 - Accession Name = '24B-55'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Merebal/Linea G'

text: 2 week old

text: spring wheat

text: Peru

text: PI 232803

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 232803

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


text: bread wheat

characteristic: common name

text: BOL-BUGDA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002157 - Accession Name = 'BOL-BUGDA'; Remarks = 'Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: winter wheat

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf


text: Huehuetenango, Guatemala by Moncure, R., USDA

text: bread wheat

text: Corriente

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003601 - Accession Name = 'Corriente'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '15.66666667,-91.58333333,1719'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Guatemala

text: Huehuetenango;flour mill, Huehuetenango

characteristic: lat lon

text: PI 193048

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 193048

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :Corriente


characteristic: SRA accession

text: bread wheat

text: ZARIA

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003248 - Accession Name = 'ZARIA'; Remarks = 'Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: 1959 Krasnodar, Russian Federation by Lukjanenko, P., Krasnodar Agricultural Research Institute. DONATED 02/08/1965 by University of Bucharest

characteristic: collected by

text: bread wheat

text: Bezostaja 1

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004338 - Accession Name = 'Bezostaja 1'; Remarks = '.'; Released = '1959'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Lutescens 17/Skorospelka 2 '

text: 2 week old

text: winter wheat

text: Russia

characteristic: geographic location (country and/or sea)

text: PI 304092

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 304092

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

text: :Bezostaja 1;:Bezostaya 1;:Bezostaia 1

characteristic: variety


text: bread wheat

characteristic: common name

text: RUSSIAN W.W. 176

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002997 - Accession Name = 'RUSSIAN W.W. 176'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000336 - Accession Name = 'Aus33410/yitpi*4'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33410/yitpi'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: Aus33410 = DOY1/AE.SQUARROSA (372)


text: 11/06/1981 Darfur, Sudan by Croston, R., IBPGR; El Ahmadi, A., Plant Breeding Section

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004031 - Accession Name = '122'; Remarks = 'Local original source. Sown August, harvested November.'; Released = '.'; Lattitude,Longitude,Elevation = '12.85,24.38333333,1950'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Sudan

text: Darfur;1 km south from Gur Lambang, Jebel Marra

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 481922

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 481922

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf


characteristic: SRA accession

text: Norway by Vlk, K., Agricultural College of Norway. DONATED by Swedish Seed Association -Svalov. DONATED 09/28/1950 by Estacao de Melhoramento de Plantas

characteristic: collected by

text: bread wheat

text: AS

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003891 - Accession Name = 'AS'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'selection from landrace'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Norway

text: PI 192294

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 192294

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: common name

text: BEIRAO

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002104 - Accession Name = 'BEIRAO'; Remarks = 'Soft / Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: South Moravia, Czech Republic by Smocek, J., Cereal Research & Breeding Institute

text: bread wheat

text: KM 964-90

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004468 - Accession Name = 'KM 964-90'; Remarks = 'Source of Spike Fertility Gene (SFG).'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: F

text: Czech Republic

text: PI 559544

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 559544

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :KM 964-90


text: Colonia, Uruguay by Instituto Fitotecnico

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004226 - Accession Name = '63-569'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Sinvalocho/Petirrojo'

text: 2 week old

text: spring wheat

text: Uruguay

text: PI 225424

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 225424

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf


characteristic: SRA accession

text: bread wheat

text: GREECE 21

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007090 - Accession Name = 'GREECE 21'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Greece

text: ZAKINTHOS;ISLAND ZANTE, ZAKINTHOS

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf


text: bread wheat

text: PERSIA 56

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007702 - Accession Name = 'PERSIA 56'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Iran

text: MESHED;KHORASAN, MESHED

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000035 - Accession Name = 'Aus29663/yitpi*22'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29663/yitpi'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus29663 = CETA/AE.SQUARROSA (895)


text: 1969 Macedonia by Institute for Small Grains

characteristic: collected by

text: bread wheat

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003789 - Accession Name = '771-VII/12'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '42.01,20.97,465'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Macedonia

text: Tetovo iza Strumice

characteristic: lat lon

text: PI 350148

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 350148

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

characteristic: variety