text: bread wheat

text: AZERBAIJAN W73337

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007784 - Accession Name = 'AZERBAIJAN W73337'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Azerbaijan

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


status: PUBLIC

characteristic: SRA accession

text: bread wheat

characteristic: common name

characteristic: cultivar

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000710 - Accession Name = 'Aus29673/2*Annuello*10'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29673/2*Annuello'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

characteristic: submission title

text: leaf

characteristic: tissue type

text: Aus29673 = GARZA/BOY//AE.SQUARROSA (484)

characteristic: variety

type: has member

Eduard Akhunov

Address: 1712 Claflin Road, Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA

Fei He

FirstName: Fei

LastName: He


text: bread wheat

text: Sunco

text: AWCC

text: exome sequences of ExomeCapture-DAS5-SUNCO - Accession Name = 'Sunco'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: India by Indian Agricultural Research Institute

characteristic: collected by

text: bread wheat

characteristic: common name

text: Kharchia

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001550 - Accession Name = 'Kharchia'; Remarks = 'Salt tolerant.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: India

text: PI 322279

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 322279

text: subsp. aestivum

text: leaf

text: :Kharchia


text: bread wheat

characteristic: cultivar

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000053 - Accession Name = 'Aus30262/annuello*28'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30262/annuello'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30262 = DOY1/AE.SQUARROSA (333)


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000353 - Accession Name = 'Aus34232/correll*18'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34232/correll'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus34232 = DOY1/AE.SQUARROSA (188)


text: Zurich, Switzerland by Swiss Experiment Station for Agriculture. DONATED 12/08/1969 by Ingold, M., Federal Agricultural Research Station

text: bread wheat

text: B 265

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004054 - Accession Name = 'B 265'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Garant/263.71-1-3'

text: 2 week old

text: spring wheat

text: Switzerland

text: PI 351908

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 351908

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :B 265;:T-2139


text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007678 - Accession Name = 'Aus28149'; Remarks = 'Hard / Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Canada

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf


text: bread wheat

text: Pavon

text: exome sequences of ExomeCapture-WSC-2-6 - Accession Name = 'Pavon'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Mexico

text: Pavon

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: Pavon

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: Argentina by Vallega, J., Estacion Experimental Central

text: bread wheat

text: Gzal. Mitre

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004653 - Accession Name = 'Gzal. Mitre'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Argentina

text: PI 213572

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 213572

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: :Gzal. Mitre;:D.I.V. 6694

characteristic: variety


text: Kiev, Ukraine by. DONATED 08/20/1993 by N.I. Vavilov Research Institute of Plant Industry

characteristic: collected by

text: bread wheat

characteristic: common name

text: Ranjaja 73

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001791 - Accession Name = 'Ranjaja 73'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Fronteira/Kollektivnaya '

text: 2 week old

text: spring wheat

text: Ukraine

text: PI 572636

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 572636

text: subsp. aestivum

text: leaf

text: :Ranjaja 73;:WIR 53172;:NSGC 72


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000712 - Accession Name = 'Aus29672/2*Annuello*2'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29672/2*Annuello'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

text: Aus29672 = KAPUDE/AE.SQUARROSA (385)


text: bread wheat

text: BUCK MALEVO

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002174 - Accession Name = 'BUCK MALEVO'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Argentina

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: Oviedo, Spain by Instituto Nacional de Investigaciones Agronomicas

text: emmer wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004007 - Accession Name = '124'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '43.06666667,-5.76666667,672'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Spain

text: Oviedo;Puente Fierros

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 276017

text: Triticum turgidum subsp. dicoccum

text: Triticum turgidum subsp. dicoccon

characteristic: scientific name

text: USDA GRIN:PI 276017

text: subsp. dicoccon

characteristic: sub species

text: leaf


text: bread wheat

text: CROATIA 3

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007290 - Accession Name = 'CROATIA 3'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: not provided

text: not provided

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: England, United Kingdom by Plant Breeding Institute. DONATED 10/07/1993 by Ambrose, M., AFRC Cereals Collection

characteristic: collected by

text: bread wheat

characteristic: common name

text: Taxi

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004603 - Accession Name = 'Taxi'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Virtue/Baron'

text: 2 week old

text: winter wheat

text: United Kingdom

text: PI 592137

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 592137

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: :Taxi;:6832;:NSGC 5382

characteristic: variety


text: bread wheat

characteristic: cultivar

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000186 - Accession Name = 'Aus30293/annuello*37'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30293/annuello'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30293 = CETA/AE.SQUARROSA (525)


text: bread wheat

text: SINAI 8

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007542 - Accession Name = 'SINAI 8'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Egypt

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: bread wheat

text: CRETE 3

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007001 - Accession Name = 'CRETE 3'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Greece

text: Crete;IRAKLION (CANDIA)

characteristic: geographic location (region and locality)

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


characteristic: SRA accession

text: 10/08/1948 Bursa, Turkey by Harlan, J., USDA-ARS

text: bread wheat

text: Akova

text: exome sequences of ExomeCapture-WSC-8-6 - Accession Name = 'Akova'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '40.21388889,28.35611111,9'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Turkey

text: Bursa;Karacabey

characteristic: lat lon

text: PI 177943

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: PI 177943

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf

characteristic: tissue type


text: New South Wales, Australia by Wenholz, H., Department of Agriculture

characteristic: collected by

text: bread wheat

characteristic: common name

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003320 - Accession Name = '81003'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Kenya/Florence/Dundee'

text: 2 week old

text: spring wheat

text: Australia

text: PI 130645

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 130645

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

characteristic: variety


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000894 - Accession Name = 'Aus29646/2*Annuello*4'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29646/2*Annuello'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus29646 = 68112/WARD//AE.SQUARROSA (369)


ExomeCapture-Bakhatwa

text: bread wheat

text: exome sequences of ExomeCapture-Bakhatwa - Accession Name = '.'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: not provided

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


characteristic: SRA accession

text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000188 - Accession Name = 'Aus30293/annuello*40'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30293/annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: Aus30293 = CETA/AE.SQUARROSA (525)


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000848 - Accession Name = 'Aus29657/2*Annuello*8'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29657/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf

characteristic: tissue type

text: Aus29657 = RABI//GS/CRA/3/AE.SQUARROSA (895)


text: Angola by. DONATED 09/28/1950 by Estacao de Melhoramento de Plantas

characteristic: collected by

text: bread wheat

characteristic: common name

text: Cana Roxa

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001276 - Accession Name = 'Cana Roxa'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Angola

text: PI 192001

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 192001

text: subsp. aestivum

text: leaf

text: :Cana Roxa;:3402


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000301 - Accession Name = 'Aus33392/yitpi*12'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33392/yitpi'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: Aus33392 = CROC_1/AE.SQUARROSA (507)

characteristic: variety


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000291 - Accession Name = 'Aus33384/yitpi*1'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33384/yitpi'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus33384 = GARZA/BOY//AE.SQUARROSA (427)


text: 1968 Malmohus, Sweden by W. Weibull Seed Company. DONATED 10/15/1973 by Nalepa, S., Institute of Plant Breeding & Acclimatization

text: bread wheat

text: Rang

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001790 - Accession Name = 'Rang'; Remarks = '.'; Released = '1968'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Els/6*Ring'

text: 2 week old

text: spring wheat

text: Sweden

characteristic: geographic location (country and/or sea)

text: PI 383403

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 383403

text: subsp. aestivum

text: leaf

text: :Rang


characteristic: SRA accession

text: PRE 1940 Baden-Wurttemberg, Germany by Wagner, S., Swiss Federal Research Sta. for Agronomy. DONATED 01/29/1970 by Popow, G., Swiss Federal Research Sta. for Agronomy

text: dinkel wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004304 - Accession Name = '69Z6.304'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '49.41666667,9.33333333,334'; Ancestry = '.'

text: 2 week old

text: winter wheat

text: Germany

text: Baden-Wurttemberg;Bauland, site 37

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 348141

characteristic: material

text: Triticum spelta

text: Triticum aestivum subsp. spelta

text: USDA GRIN:PI 348141

text: subsp. spelta

characteristic: sub species

text: leaf


text: Zambia by Mount Makulu Research Station; Pope, W., University of Idaho

characteristic: collected by

text: bread wheat

text: Idaho 1880 NR BB

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001491 - Accession Name = 'Idaho 1880 NR BB'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'T. timopheevii/3*T. vulgare//2*Lemhi'

text: 2 week old

text: spring wheat

text: Zambia

text: PI 234239

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 234239

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf

characteristic: tissue type

text: :Idaho 1880 NR BB


text: 1960 Ilam, Iran by Harlan, J., USDA-ARS

text: bread wheat

characteristic: common name

characteristic: cultivar

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003670 - Accession Name = '86'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '33.63333333,46.43333333,1446'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Iran

text: Ilam;near Ilam

text: PI 268305

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 268305

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

characteristic: variety


text: bread wheat

text: MT 8192

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002775 - Accession Name = 'MT 8192'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: USA

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


characteristic: SRA accession

text: bread wheat

text: Sunguard

text: AWCC

text: exome sequences of ExomeCapture-DAS5-SUNGUARD - Accession Name = 'Sunguard'; Remarks = 'Hard / White'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: 08/21/1948 Van, Turkey by Harlan, J., USDA-ARS

characteristic: collected by

text: bread wheat

text: Tir

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004606 - Accession Name = 'Tir'; Remarks = ''Tir' in Turkish refers to a 'deep-seeded wheat'.'; Released = '.'; Lattitude,Longitude,Elevation = '39.10111111,43.20111111,1788'; Ancestry = '.'

text: 2 week old

text: winter wheat

text: Turkey

text: Van;Kocapinar, Ercis

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 178184

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 178184

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf

text: :Tir;:7702;:AUS 8785


text: bread wheat

characteristic: common name

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000591 - Accession Name = 'Aus29641/2*annuello*1'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29641/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf

characteristic: tissue type

text: Aus29641 = AOS/AE.SQUARROSA (269)


text: bread wheat

text: Idaho 1880 NR BA

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-001490 - Accession Name = 'Idaho 1880 NR BA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'T. timopheevii/3*T. vulgare//2*Lemhi'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Zambia

text: PI 234238

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 234238

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: :Idaho 1880 NR BA

characteristic: variety


characteristic: SRA accession

text: bread wheat

text: CHARA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002230 - Accession Name = 'CHARA'; Remarks = 'Hard / White'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000007 - Accession Name = 'Aus29020/annuello*39'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29020/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus29020 = CROC_1/AE.SQUARROSA (517)


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000305 - Accession Name = 'Aus33392/yitpi*39'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33392/yitpi'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: leaf

text: Aus33392 = CROC_1/AE.SQUARROSA (507)


text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000244 - Accession Name = 'Aus30635/yitpi*19'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30635/yitpi'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

text: Aus30635 = GAE.SQUARROSA (408)


text: 1971 England, United Kingdom by Plant Breeding Institute

characteristic: collected by

text: bread wheat

text: Maris Huntsman

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004489 - Accession Name = 'Maris Huntsman'; Remarks = '.'; Released = '1971'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Cappelle Desprez*4/Hybrid 46//2*Professeur Marchal'

text: 2 week old

text: winter wheat

text: United Kingdom

text: PI 404008

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 404008

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: tissue type

text: :Maris Huntsman


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000004 - Accession Name = 'Aus29020/annuello*27'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29020/annuello'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus29020 = CROC_1/AE.SQUARROSA (517)


characteristic: SRA accession

text: Israel by. DONATED 1947 by Levine, M., Minnesota Agric. Exp. Station

text: bread wheat

text: Australith

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001203 - Accession Name = 'Australith'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

text: Israel

text: CItr 12808

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 12808

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: :Australith;:CI 12808

characteristic: variety


text: Rift Valley, Kenya by Plant Breeding Station. DONATED 08/06/1937 by Wenholz, H., Department of Agriculture

text: bread wheat

text: C 10854

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003753 - Accession Name = 'C 10854'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Wisc. 245 sib'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Kenya

characteristic: geographic location (country and/or sea)

text: PI 124739

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 124739

text: subsp. aestivum

text: leaf

text: :C 10854


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000439 - Accession Name = 'Aus34274/correll*52'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34274/correll'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

text: Aus34274 = 68.111/RGB-U//WARD/3/AE.SQUARROSA (321)


text: bread wheat

characteristic: common name

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000547 - Accession Name = 'Aus34459/annuello*40'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34459/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: Aus34459 = YUK/AE.SQUARROSA (217)


text: bread wheat

text: TAM W-104

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003109 - Accession Name = 'TAM W-104'; Remarks = 'Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

text: USA

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf


text: 1988 Yemen by Guarino, L., International Plant Genetic Resources Institute

characteristic: collected by

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004244 - Accession Name = '1076'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '15.5,47.5,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Yemen

text: PDR South Yemen

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 585211

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 585211

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :1076;:NSGC 1383


characteristic: SRA accession

text: Burundi by Ingold, M., Federal Agricultural Research Station

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001036 - Accession Name = 'T-2093'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Burundi

text: PI 351874

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 351874

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

characteristic: variety


text: bread wheat

text: NAVARRE 58

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007677 - Accession Name = 'NAVARRE 58'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: 1967 Pichincha, Ecuador by INIAP. DONATED 07/10/1969 by Orellana, H., Santa Catalina Experiment Station

text: bread wheat

characteristic: common name

text: Amazonas

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001191 - Accession Name = 'Amazonas'; Remarks = '.'; Released = '1967'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Salles//McMurachy/Mayo/3/Maida/Kenya 117A/4/Frontana//Kenya 58/Newthatch'

text: 2 week old

text: spring wheat

text: Ecuador

text: PI 343736

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 343736

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :Amazonas


text: Uzbekistan by. DONATED 01/25/1972 by N.I. Vavilov Institute of Plant Industry

characteristic: collected by

text: bread wheat

text: Kzyl Sark

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-001577 - Accession Name = 'Kzyl Sark'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'selection from Turkmenistan landvariety'

text: 2 week old

text: winter wheat

text: Uzbekistan

text: PI 372132

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 372132

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Kzyl Sark;:WIR 39320


characteristic: SRA accession

text: Israel by Agricultural Research Organization

text: bread wheat

text: Ein Dor

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003707 - Accession Name = 'Ein Dor'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Israel

text: PI 384025

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 384025

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :Ein Dor


text: Tashkent, Uzbekistan by Durrschmidt, H.

text: bread wheat

text: Yantagbay

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001984 - Accession Name = 'Yantagbay'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '41.33333333,69.3,473'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Uzbekistan

text: Tashkent;Tashkent

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 9791

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 9791

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: :Yantagbay;:CItr 2404;:CI 2404

characteristic: variety


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000847 - Accession Name = 'Aus29657/2*Annuello*7'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29657/2*Annuello'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

text: Aus29657 = RABI//GS/CRA/3/AE.SQUARROSA (895)


text: bread wheat

characteristic: common name

text: ESTACAO

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002362 - Accession Name = 'ESTACAO'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Portugal

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


characteristic: SRA accession

text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000295 - Accession Name = 'Aus33384/yitpi*45'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33384/yitpi'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: Aus33384 = GARZA/BOY//AE.SQUARROSA (427)


text: PRE 1930 Portugal by Watkins, A., University of Cambridge. DONATED 01/11/1962 by Dept. of Scientific & Industrial Res.

characteristic: collected by

text: bread wheat

text: Estacao

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001382 - Accession Name = 'Estacao'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: winter wheat

text: Portugal

text: PI 278418

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 278418

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :Estacao;:Portugal 165


text: bread wheat

text: ONOHOISKAJA 4

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002833 - Accession Name = 'ONOHOISKAJA 4'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

characteristic: variety


text: PRE 1930 Tunisia by Watkins, A., University of Cambridge. DONATED 01/11/1962 by Dept. of Scientific & Industrial Res.

text: bread wheat

text: Tunis 23

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001935 - Accession Name = 'Tunis 23'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Tunisia

characteristic: geographic location (country and/or sea)

text: PI 278560

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 278560

text: subsp. aestivum

text: leaf

text: :Tunis 23;:AUS 13159


text: 1969 Korea, South by. DONATED 05/28/1971 by Sudholt, A., Rural Development Division

text: bread wheat

characteristic: common name

text: Nam Kwang

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003756 - Accession Name = 'Nam Kwang'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Suwon 85/Norin 12 '

text: 2 week old

text: spring wheat

text: South Korea

text: PI 362178

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 362178

text: subsp. aestivum

text: leaf

text: :Nam Kwang


text: bread wheat

text: FASAN

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002368 - Accession Name = 'FASAN'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Mexico

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


characteristic: SRA accession

text: bread wheat

text: PLISKA

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002857 - Accession Name = 'PLISKA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Bulgaria

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf


text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007056 - Accession Name = 'Aus27221'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: F

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf


text: Transvaal, South Africa by College of Agriculture & Experiment Station

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004001 - Accession Name = '190/52'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: South Africa

text: PI 224285

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 224285

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: Transvaal, South Africa by Laubscher, F., College of Agriculture and Research

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003999 - Accession Name = '163-2-1-1'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'T. aestivum/Agropyron'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: South Africa

text: PI 170910

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 170910

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

characteristic: variety


text: Urfa, Turkey by Taysi, V., Agricultural Institute. DONATED 08/03/1948 by Harlan, J., USDA-ARS

text: bread wheat

characteristic: common name

text: Mahlut

text: exome sequences of ExomeCapture-WSC-8-4 - Accession Name = 'Mahlut'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '37.25,39,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Turkey

characteristic: geographic location (country and/or sea)

characteristic: lat lon

text: PI 166333

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: PI 166333

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: :Mahlut;:711;:175a;:AUS 8047


text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000545 - Accession Name = 'Aus34459/annuello*35'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34459/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus34459 = YUK/AE.SQUARROSA (217)


characteristic: SRA accession

text: bread wheat

text: Mahlut

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004483 - Accession Name = 'Mahlut'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '37.25,39,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Turkey

text: PI 166333

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 166333

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :Mahlut;:711;:175a;:AUS 8047


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000110 - Accession Name = 'Aus30269/annuello*84'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30269/annuello'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: Aus30269 = LARU/AE.SQUARROSA (507)


text: bread wheat

text: DAMASCUS 2

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007009 - Accession Name = 'DAMASCUS 2'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Syria

text: Dara;BOSRA ESKI SHAM (BUSRA), Dara

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000055 - Accession Name = 'Aus30262/annuello*32'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30262/annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30262 = DOY1/AE.SQUARROSA (333)

characteristic: variety


text: Rio Grande do Sul, Brazil by. DONATED 10/1987 by Moseman, J., USDA-ARS

characteristic: collected by

text: bread wheat

text: CEP 75336

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003405 - Accession Name = 'CEP 75336'; Remarks = 'Resistance to leaf rust.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'SA 3423/Pat 7285'

text: 2 week old

text: spring wheat

text: Brazil

text: PI 520282

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 520282

text: subsp. aestivum

text: leaf

text: :CEP 75336


characteristic: SRA accession

text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000135 - Accession Name = 'Aus30274/annuello*3'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30274/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus30274 = SCA/AE.SQUARROSA (248)


text: bread wheat

text: LGOVSKAIA 873

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002663 - Accession Name = 'LGOVSKAIA 873'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: winter wheat

text: Russia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


text: Federal District, Mexico by Mujeeb-Kazi, A., International Maize & Wheat Improvement Center; Villareal, R., International Maize & Wheat Improvement Center; Delgado, R., International Maize & Wheat Improvement Center; William, M., International Maize & Wheat Improvement Center; Rosas, V., International Maize & Wheat Improvement Center; Cortes, A., International Maize & Wheat Improvement Center

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003811 - Accession Name = 'CIGM91.345-5'; Remarks = 'Near isogenic line with homozygous chromosome 1B substitution for T1BL.1RS wheat-rye chromosome translocation. Plant height 99 cm. Anthesis 87 d. Physiological maturity 133 d.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Seri M82/Pavon F76//8*Seri M82'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Mexico

text: PI 613289

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 613289

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf


text: Former Soviet Union by. COLLECTED Israel by. DONATED 11/20/1930 by Dickson, J., USDA-Bureau of Plant Industry

text: bread wheat

characteristic: common name

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003704 - Accession Name = '400'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Israel

characteristic: geographic location (country and/or sea)

text: PI 94568

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 94568

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000079 - Accession Name = 'Aus30265/annuello*45'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30265/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

text: Aus30265 = FALCIE.SQUARROSA (389)

characteristic: variety


text: Kiev, Ukraine by. DONATED 12/30/1959 by N.I. Vavilov Institute of Plant Industry

characteristic: collected by

text: bread wheat

text: Belocerkovskaja 198

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004138 - Accession Name = 'Belocerkovskaja 198'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Erythrospermum 15/Kawvale'

text: 2 week old

text: spring wheat

text: Ukraine

text: PI 262616

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 262616

text: subsp. aestivum

text: leaf

text: :Belocerkovskaja 198;:WIR 41153


characteristic: SRA accession

text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000489 - Accession Name = 'Aus34435/annuello*6'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34435/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: Aus34435 = YAV79//DACK/RABI/3/SNIPE/4/AE.SQUARROSA (460)


text: Transvaal, South Africa by Laubscher, F., College of Agriculture and Research

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004000 - Accession Name = '166-2-M-M'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'T. aestivum/Agropyron'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: South Africa

text: PI 170911

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 170911

text: subsp. aestivum

characteristic: sub species

text: leaf


text: Washington, United States by USDA-Bureau of Plant Industry

text: dinkel wheat

text: Bearded Spelt

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004183 - Accession Name = 'Bearded Spelt'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '47,-120,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: USA

characteristic: lat lon

text: PI 168680

text: Triticum spelta

text: Triticum aestivum subsp. spelta

text: USDA GRIN:PI 168680

text: subsp. spelta

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :Bearded Spelt;:CItr 1774;:CI 1774


text: bread wheat

characteristic: common name

text: BUCK HUANCHEN

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002173 - Accession Name = 'BUCK HUANCHEN'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Argentina

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf


text: PRE 1930 Portugal by Watkins, A., University of Cambridge. DONATED 01/11/1962 by Dept. of Scientific & Industrial Res.

characteristic: collected by

text: bread wheat

text: Barbela Grosso

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004676 - Accession Name = 'Barbela Grosso'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Portugal

text: PI 278405

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 278405

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :Barbela Grosso;:Portugal 119

characteristic: variety


characteristic: SRA accession

text: bread wheat

text: KLEIN CACIQUE

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002555 - Accession Name = 'KLEIN CACIQUE'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Argentina

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: 06/05/1979 Rapti, Nepal by Erskine, W., IBPGR, FAO; Shrestha, P., IBPGR; Bourgois, J., IBPGR

text: bread wheat

text: exome sequences of ExomeCapture-WSC-5-13 - Accession Name = '148'; Remarks = 'Awnless. Seeds red.'; Released = '.'; Lattitude,Longitude,Elevation = '28.75,82.38333333,1540'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Nepal

text: Rapti;Gkarikhola, Rukum, Rapati

characteristic: geographic location (region and locality)

text: PI 445736

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: PI 445736

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :148;:Dudhe Mudulo;:FAO 51.876


text: bread wheat

characteristic: common name

text: CHINA 4

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007220 - Accession Name = 'CHINA 4'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: China

text: SHANGHAI;TSAO-KA-DOO VILLAGE NEAR SHANGHAI

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


text: bread wheat

text: Kennedy

text: AWCC

text: exome sequences of ExomeCapture-DAS5-KENNEDY - Accession Name = 'Kennedy'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission title

text: leaf


text: 1981 Minnesota, United States by Pioneer Hi-Bred International, Inc.

characteristic: collected by

text: bread wheat

text: PR 2360

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001767 - Accession Name = 'PR 2360'; Remarks = 'Hard red winter wheat.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Tezanos Pintos Precoz/Sonora 64//Crim/3/Era'

text: 2 week old

text: spring wheat

text: USA

text: PI 600836

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 600836

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :PR 2360

characteristic: variety


characteristic: SRA accession

text: Central, Paraguay by Loegering, W., USDA-ARS, Crops Research Division

text: bread wheat

text: Jhiasevava

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-001524 - Accession Name = 'Jhiasevava'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '-25.38333333,-57.15,195'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Paraguay

text: Central;Caucupe

characteristic: lat lon

text: PI 230651

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 230651

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: :Jhiasevava


text: Austria by Lasser. DONATED 01/08/1959 by Seed Testing Station

text: bread wheat

text: Drauhefener Kolben

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003346 - Accession Name = 'Drauhefener Kolben'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Bielers Edelepp/Dr. Lassers Kolben'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Austria

text: PI 254834

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 254834

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :Drauhefener Kolben


text: Uzbekistan by. DONATED 10/17/1991 by N.I. Vavilov Research Institute of Plant Industry

text: bread wheat

characteristic: common name

text: Buhara Bugdai

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004240 - Accession Name = 'Buhara Bugdai'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Uzbekistan

text: PI 565355

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 565355

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :Buhara Bugdai;:WIR 13595;:MAC9192-668


text: bread wheat

text: ACA 320

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002014 - Accession Name = 'ACA 320'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Argentina

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

text: MDM

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-MDM - Accession Name = 'MDM'; Remarks = 'Hard white winter wheat. Semi-dwarf. Phenotypically indistinguishable from Eltan. Laboratory analyses indicate it has superior hard white wheat quality for noodle color, texture, and loaf volume.'; Released = '2005'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Klasic/5*Eltan'

text: 2 week old

text: winter wheat

text: USA

text: PI 634716

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 634716

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :MDM;:WA007936;USA126:NSGC 9400;:J9800628

characteristic: variety


characteristic: SRA accession

text: bread wheat

text: SINCRON

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003046 - Accession Name = 'SINCRON'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Romania

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: 1969 Bosnia and Herzegovina by Institute for Small Grains

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003393 - Accession Name = '896-IX/1'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '44.25,17.833333,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Bosnia and Herzegovina

text: Gluvnina

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 350254

characteristic: material

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 350254

text: subsp. aestivum

text: leaf


text: Tozeur, Tunisia by. DONATED 07/1972 by University of Nebraska

text: bread wheat

characteristic: common name

text: Fritissa

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004078 - Accession Name = 'Fritissa'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '33.98333333,8.16666667,89'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Tunisia

text: Tozeur;A M'Hareb

text: CItr 15511

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:CItr 15511

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :Fritissa;:3258-23;:CI 15511


text: bread wheat

text: Hidhab

text: exome sequences of ExomeCapture-WSC-5-14 - Accession Name = 'Hidhab'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Algeria

characteristic: geographic location (country and/or sea)

text: Hidhab

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: Hidhab

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

characteristic: submission identifier

text: leaf


characteristic: SRA accession

text: Federal District, Mexico by Mujeeb-Kazi, A., International Maize & Wheat Improvement Center; Delgado, R., International Maize & Wheat Improvement Center; Rosas, V., International Maize & Wheat Improvement Center; Cortes, A., International Maize & Wheat Improvement Center; Cano, S., International Mazie and Wheat Improvement Center

text: bread wheat

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003817 - Accession Name = 'CIGM98.752-1'; Remarks = '1B isogenic line produced from a T1BL.1RS bread wheat cultivar. Developed to enhance existing diversity and further elucidate the contribution of T1BL.1RS translocation chromosome.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Kauz/Pavon 76//8* Kauz'

text: 2 week old

text: spring wheat

text: Mexico

text: PI 614040

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 614040

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: tissue type

characteristic: variety


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000297 - Accession Name = 'Aus33384/yitpi*49'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33384/yitpi'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: Aus33384 = GARZA/BOY//AE.SQUARROSA (427)


text: Indiana, United States by Shaner, G., Purdue University; Buechley, G., Purdue University

characteristic: collected by

text: bread wheat

characteristic: common name

text: SSL 87-88

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001872 - Accession Name = 'SSL 87-88'; Remarks = 'Resistant to Fusarium Head Blight (Scab). Contains Type II resistance - resistance to spread. Point reaction = 3.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'selection from Victor V, CI15124'

text: 2 week old

text: spring wheat

text: USA

text: PI 641760

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 641760

text: subsp. aestivum

text: leaf

text: :SSL 87-88;USA126:NSGC 17674


text: Rift Valley, Kenya by Plant Breeding Station

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003750 - Accession Name = '557.L.I.R.2'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'RL2265/3*Redman//360H'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Kenya

text: PI 254125

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 254125

text: subsp. aestivum

text: leaf


text: Tirol, Austria by Mayr, E., Lehranstalt fur Pflanzenzucht und Samenprufung. DONATED 06/16/1970 by Popow, G., Swiss Federal Research Sta. for Agronomy

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003342 - Accession Name = '69Z108.39'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '46.91666667,12.5,1253'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Austria

characteristic: geographic location (country and/or sea)

text: Tirol;Osttirol

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 350765

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 350765

text: subsp. aestivum

characteristic: sub species

text: leaf


characteristic: SRA accession

text: Angola by. DONATED 09/28/1950 by Estacao de Melhoramento de Plantas

text: bread wheat

text: Cana Roxa

characteristic: cultivar

text: exome sequences of ExomeCapture-WSC-8-8 - Accession Name = 'Cana Roxa'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Angola

text: PI 192001

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: PI 192001

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :Cana Roxa;:3402


text: Goias, Brazil by U.S. Embassy

text: bread wheat

text: Goiana

text: exome sequences of ExomeCapture-WSC-8-9 - Accession Name = 'Goiana'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '-12,-48,1525'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Brazil

text: Goias;nearly inaccessible plateau east-central Goiaz

text: PI 153785

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: PI 153785

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: tissue type

text: :Goiana

characteristic: variety


text: bread wheat

characteristic: common name

text: KLEIN ANIVERSARI

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002553 - Accession Name = 'KLEIN ANIVERSARI'; Remarks = 'Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Argentina

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: 02/1951 Harer, Ethiopia by Archer, W., USDA-ARS

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001163 - Accession Name = '9934'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '9.31666667,41.45,2207'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: winter wheat

characteristic: ecotype

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: Harer;Deder

text: PI 197250

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 197250

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf


characteristic: SRA accession

text: bread wheat

text: ARMINDA

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002061 - Accession Name = 'ARMINDA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

text: Netherlands

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000541 - Accession Name = 'Aus34459/annuello*10'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34459/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: Aus34459 = YUK/AE.SQUARROSA (217)


text: 04/22/1987 Oman by Guarino, L., International Plant Genetic Resources Institute

text: bread wheat

text: Mufsegha

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001657 - Accession Name = 'Mufsegha'; Remarks = 'Sown November, harvested April. Irrigated. Used for food.'; Released = '.'; Lattitude,Longitude,Elevation = '23.16666667,57.16666667,500'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Romania

text: 10km NNE of Al Alshi, Interior Province

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 532255

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 532255

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: common name

text: SMYRNA 17

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007033 - Accession Name = 'SMYRNA 17'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Turkey

text: Smyrna;KIRK AGACH (Kirkagac), Manisa, 50 miles NE Smyrna

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007650 - Accession Name = 'Aus28120'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: Canada

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: bread wheat

text: CROATIA 6

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007292 - Accession Name = 'CROATIA 6'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: not provided

text: not provided

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000156 - Accession Name = 'Aus30282/annuello*48'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30282/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: Aus30282 = DOY1/AE.SQUARROSA (334)


text: 1965 Macedonia, Greece by Institute of Cereals

characteristic: collected by

text: bread wheat

text: Pindos

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004545 - Accession Name = 'Pindos'; Remarks = '.'; Released = '1965'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Katranitsa/Qualiti/Rieti'

text: 2 week old

text: winter wheat

text: Greece

text: PI 338533

characteristic: material

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 338533

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

characteristic: common name

text: AUSTRALIA CCI W370

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007162 - Accession Name = 'AUSTRALIA CCI W370'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: Guatemala by Servicio Cooperativo Inter-Americano de Agricultura

text: bread wheat

text: Criollo Santa Irene

text: exome sequences of ExomeCapture-WSC-8-3 - Accession Name = 'Criollo Santa Irene'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Guatemala

text: PI 245368

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: PI 245368

text: subsp. aestivum

text: leaf

text: :Criollo Santa Irene

characteristic: variety


text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007299 - Accession Name = 'Aus27485'; Remarks = 'Hard / White'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: F

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: Puebla, Mexico by. DONATED 1904 by Carleton, M., USDA-Bureau of Plant Industry

text: bread wheat

text: CI 2804

characteristic: cultivar

text: exome sequences of ExomeCapture-Cltr-2804 - Accession Name = 'CI 2804'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '19.28333333,-98.43333333,2256'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Mexico

text: Puebla;S. Martin Texmelucan

characteristic: geographic location (region and locality)

characteristic: lat lon

text: CItr 2804

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: CItr 2804

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

text: :CI 2804


text: 1962 Angola by Goncalves de Macedo, V., Inst. Investigacao Agronomicos Angola

characteristic: collected by

text: bread wheat

text: Bairrao

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004675 - Accession Name = 'Bairrao'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Angola

text: PI 344016

text: Triticum aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 344016

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: :Bairrao