text: live

text: Generic

text: 9 months

text: Mus musculus

text: Heart

text: Heart

text: IF16 rep1


status: PUBLIC

characteristic: External Id

text: ESIR, Physiology, School Of Medicine, National University of Singapore

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 9 months

tag: attribute

characteristic: age

text: Mus musculus

characteristic: organism

text: Heart

characteristic: strain

text: Heart

characteristic: tissue

text: IF12 rep5

characteristic: title


text: live

text: Generic

text: 9 months

text: Mus musculus

text: Heart

text: Heart

text: IF12 rep4


text: live

text: Generic

text: 9 months

text: Mus musculus

text: Heart

text: Heart

text: IF12 rep3


text: live

text: Generic

text: 9 months

text: Mus musculus

text: Heart

text: Heart

text: IF12 rep2


text: live

text: Generic

text: 9 months

text: Mus musculus

text: Heart

text: Heart

text: IF12 rep1


text: live

text: Generic

text: 9 months

text: Mus musculus

text: Heart

text: Heart

text: AL rep5


text: live

text: Generic

text: 9 months

text: Mus musculus

text: Heart

text: Heart

text: AL rep4


text: live

text: Generic

text: 9 months

text: Mus musculus

text: Heart

text: Heart

text: AL rep3


text: live

text: Generic

text: 9 months

text: Mus musculus

text: Heart

text: Heart

text: AL rep2


text: University College Cork

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: human gut

text: faecal matter

text: Ireland

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: feces

characteristic: isolation source

text: 51.8985 N 8.4756 W

characteristic: lat lon

text: not collected (draft genomes)

text: Agathobacter rectalis

text: MIGS Cultured Bacterial/Archaeal sample from Agathobacter rectalis


name: The Microbe sample of Escherichia coli strain WCHEC025985

characteristic: External Id

text: West China Hospital, Sichuan University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China: Chengdu, Sichuan

text: Homo sapiens

text: Escherichia coli

text: pure culture

characteristic: sample type


Bacillus coagulans ATCC 7050T

text: American Type Culture Collection (ATCC)

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

text: Missing

text: Missing

text: Missing

text: Heyndrickxia coagulans DSM 1 = ATCC 7050

text: Bacterial Isolate

text: ATCC 7050

text: Bacillus coagulans ATCC 7050T

text: type strain of Bacillus coagulans

characteristic: type-material


text: International Livestock Research Institute (ILRI)

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: Asmare Dagnew Moges

characteristic: collected by

text: Ethiopia: Wolisso, Fodu Gora

text: Citrus x aurantium

text: Anthracnose disease of Citrus

characteristic: host disease

characteristic: isolate

text: Wolisso, Central Ethiopia

text: 8.533 N 37.967 E

text: Colletotrichum gloeosporioides

characteristic: organism

characteristic: strain

text: Pathogen: clinical or host-associated sample from Colletotrichum gloeosporioides


Bacillus sp. P16

characteristic: External Id

text: Chung-Ang University

text: live

text: Microbe, viral or environmental

text: South Korea

characteristic: geo loc name

text: red alga

characteristic: isolation source

text: Alkalicoccobacillus porphyridii

text: a marine red alga

text: Microbe sample from Alkalicoccobacillus porphyridii

characteristic: title

text: type strain of Alkalicoccobacillus porphyridii


Generic sample from Archytas apicifer

text: CSIRO Australian National Insect Collection

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Invertebrate

characteristic: altitude

text: Wright State University Insect collection (JOSC)

characteristic: biomaterial provider

text: John O. Stireman III

characteristic: collection date

text: adult

characteristic: dev stage

text: USA: Ohio, Greene Co., Wright State University Woods

text: John O. Stireman III

characteristic: identified by

text: archy

text: wild

text: 39.781 N 84.058 W

characteristic: lat lon

text: Archytas apicifer

text: male

characteristic: sex

text: thorax

characteristic: tissue

text: Invertebrate sample from Archytas apicifer


Chrysotachina longipennis

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: John O. Stireman III

characteristic: collected by

text: adult

text: USA: West Virginia, Hampshire Co., Springfield, nr. S. branch Potomac River

text: John O. Stireman III

text: chryslo

characteristic: isolate

text: wild

text: 39.418 N 78.710 W

text: Chrysotachina longipennis

text: not determined

text: thorax

text: Invertebrate sample from Chrysotachina longipennis


name: Generic sample from Cylindromyia interrupta

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Invertebrate

text: John O. Stireman III

text: adult

text: USA: Ohio, Hocking Co., Stump Run Road

characteristic: geo loc name

text: John O. Stireman III

text: cylint

text: wild

characteristic: isolation source

text: 39.526 N 82.653 W

text: Cylindromyia interrupta

characteristic: organism

text: female

text: thorax

text: Invertebrate sample from Cylindromyia interrupta

characteristic: title


name: Generic sample from Leschenaultia reinhardi

text: live

text: Invertebrate

characteristic: altitude

characteristic: biomaterial provider

text: John O. Stireman III

characteristic: collection date

text: adult

characteristic: dev stage

text: USA: Ohio, Hocking Co., Crane Hollow Nature Preserve

text: John O. Stireman III

characteristic: identified by

text: lesch

text: wild

text: 39.473 N 82.571 W

characteristic: lat lon

text: Leschenaultia reinhardi

text: female

characteristic: sex

text: thorax

text: Invertebrate sample from Leschenaultia reinhardi


name: Generic sample from Ptilodexia rufipennis

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: John O. Stireman III

text: adult

text: John O. Stireman III

text: ptild

text: wild

text: 39.473 N 82.571 W

text: Ptilodexia rufipennis

text: male

text: thorax

characteristic: tissue

text: Invertebrate sample from Ptilodexia rufipennis


Thelaira americana

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Invertebrate

text: Isaac S. Winkler

characteristic: collected by

text: adult

text: USA: Ohio, Greene Co. Beavercreek, Fairborn Marsh

characteristic: geo loc name

text: John O. Stireman III

text: thela

characteristic: isolate

text: wild

characteristic: isolation source

text: 39.768 N 84.006 W

text: Thelaira americana

text: male

text: thorax

text: Invertebrate sample from Thelaira americana


Trichopoda pennipes

text: live

text: Invertebrate

characteristic: altitude

characteristic: biomaterial provider

text: John O. Stireman III

characteristic: collection date

text: adult

characteristic: dev stage

text: USA: Ohio, Hocking Co., Keifel Road

text: John O. Stireman III

characteristic: identified by

text: tricp

text: wild

text: 39.453 N 82.615 W

text: Trichopoda pennipes

characteristic: organism

text: female

text: thorax

text: Invertebrate sample from Trichopoda pennipes

characteristic: title


Winthemia rufopicta

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Isaac S. Winkler

text: adult

text: John O. Stireman III

text: wintr

text: wild

text: 39.781 N 84.058 W

characteristic: lat lon

text: Winthemia rufopicta

text: female

characteristic: sex

text: thorax

text: Invertebrate sample from Winthemia rufopicta


Cryptochetum sp. cry04

characteristic: External Id

text: North Carolina State University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Invertebrate

characteristic: SRA accession

text: Australian National Insect Collection CSIRO

text: Keith Bayless, Bryan Lessard

characteristic: collected by

text: adult

text: Australia: QLD, Lamington NP, Binna Burra, light trap

characteristic: geo loc name

text: Keith Bayless

text: wild

text: 28.1935 S 153.1872 E

text: Cryptochetum sp. cry04

text: not determined

characteristic: specimen voucher

text: whole body

characteristic: tissue

text: Invertebrate sample from Cryptochetum sp. cry04


Rana catesbeiana

text: Chonnam National University

text: live

text: Model organism or animal

text: Study of the Rana catesbeiana

characteristic: description

text: adult

characteristic: dev stage

text: The korean peninsula

characteristic: isolate

text: Aquarana catesbeiana

characteristic: organism

text: not determined

text: toe

text: Model organism or animal sample from Rana catesbeiana


The muscle sample of Hyriopsis cumingii

text: Center for Ecological and Environmental Sciences

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: collection date

text: Pacific Ocean

text: Pearl mussel

characteristic: host

text: China

text: Sinohyriopsis cumingii

text: muscle

text: Invertebrate sample from Hyriopsis cumingii

characteristic: title


name: Bottlenose dolphin child tissue for G10K-VGP trio reference genome

characteristic: External Id

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Adult

characteristic: age

text: National Aquarium, Baltimore MD

characteristic: biomaterial provider

text: Leigh Clayton, Jill Arnold, Winston Timp, Norah Hilger

text: The bottlenose dolphin is the most common species of the family Delphinidae, and one of the best studied vocal learning mammals. This sample was collected as part of family trio of bottlenose dolphins. This sample is from a deceased male calf also from the National Aquarium Child. The parents are an adult female housed at the National Aquarium, an adult male housed at Gulf World. This trio is currently being used to generate chromosomal level reference assembly as part of the G10K-VGP Project.

text: USA: Baltimore, Maryland

text: 39.2851 N 76.6083 W

characteristic: lat lon

text: Tursiops truncatus

text: male

characteristic: sex

text: flash frozen

text: calf #211002

characteristic: subject ID

text: spleen

text: Animal sample from Tursiops truncatus

text: 100% EtOH

characteristic: treatment


text: UC Berkeley

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: Belgium:Laakdal - A

characteristic: geo loc name

text: Aquarana catesbeiana

characteristic: isolate

text: Batrachochytrium dendrobatidis

characteristic: organism

text: isolate

characteristic: sample type

text: GPL

characteristic: strain


characteristic: External Id

text: UC Berkeley

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: collection date

text: Belgium:Balen - A

text: Aquarana catesbeiana

characteristic: host

text: Batrachochytrium dendrobatidis

text: isolate

text: GPL

characteristic: title


text: UC Berkeley

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Belgium:Arendonk - A

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: field swab

text: GPL


text: UC Berkeley

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Belgium:veerle

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: field swab

text: GPL


33-LIT B9

text: UC Berkeley

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: Belgium:olmen

text: Aquarana catesbeiana

text: 33-LIT B9

text: Batrachochytrium dendrobatidis

text: field swab

text: GPL

text: 33-LIT B9


text: UC Berkeley

text: live

text: Microbe, viral or environmental

text: Belgium:olmen

characteristic: geo loc name

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: field swab

text: GPL


text: UC Berkeley

text: live

text: Microbe, viral or environmental

text: Belgium:Arendonk - A

text: Aquarana catesbeiana

characteristic: isolate

text: Batrachochytrium dendrobatidis

text: isolate

text: GPL


text: UC Berkeley

text: live

text: Microbe, viral or environmental

text: Netherlands: Baarlo

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

characteristic: organism

text: field swab

text: CAPE


text: UC Berkeley

text: live

text: Microbe, viral or environmental

text: Netherlands: Baarlo

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: field swab

characteristic: sample type

text: GPL


text: UC Berkeley

text: live

text: Microbe, viral or environmental

text: USA:Beatty, Nevada (Amargosa River)

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: isolate

text: GPL

characteristic: strain


characteristic: External Id

text: UC Berkeley

text: live

text: Microbe, viral or environmental

text: Canada:Mont-Saint-Hilaire, Quebec

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: isolate

text: GPL


text: UC Berkeley

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: USA:Point Reyes, CA

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: isolate

text: GPL


text: UC Berkeley

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: Venezuela:Merida

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: isolate

text: GPL


text: UC Berkeley

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: USA:Bethel, ME

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: isolate

text: GPL


text: UC Berkeley

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Mexico:Mexico City

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: isolate

text: GPL


text: UC Berkeley

text: live

text: Microbe, viral or environmental

text: USA:USA, Ypsilanti, Michigan, market

text: Aquarana catesbeiana

characteristic: host

text: Batrachochytrium dendrobatidis

text: isolate


text: UC Berkeley

text: live

text: Microbe, viral or environmental

text: USA:Overton Wildlife Management Area, Nevada

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: isolate

text: GPL

characteristic: title


text: UC Berkeley

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: China:Yunnan Province_Lincang_Yongde

text: Aquarana catesbeiana

text: Batrachochytrium dendrobatidis

text: museum swab

text: GPL


name: Pooled metagenomic backbone from enriched soil communities

text: Georg-August-University Goettingen

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Pooled metagenome containing data from a soil sample and acetonitrile- as well as acetic acid-enriched communities. Used as backbone for metatranscriptomic studies.

characteristic: description

text: garden

text: soil

text: Germany: Experimental Botanical Garden Goettingen

text: compost soil; pooled samples from acetonitrile as well as acetic acid enrichment cultures

text: 51.556278 N 9.9545 E

text: compost metagenome

text: aerobe

text: 100 g compost soil were solved in 500 ml H2O and susbsequently filtered with a 2.7 micrometer filter.

text: 100 g

text: Pooled metagenomic backbone


text: Department of Biomedical Science, University of Sheffield

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: Stage

text: Wild-type

characteristic: genotype

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 18

text: 100uM betamethasone

characteristic: treatment


text: live

text: Generic

characteristic: SRA accession

text: Wild-type

text: Danio rerio

characteristic: organism

text: Dissected larval head

text: GR wild-type betamethasone-treated 17

text: 100uM betamethasone


characteristic: External Id

text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 16

text: 100uM betamethasone


characteristic: INSDC last update

text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 15

text: 100uM betamethasone


characteristic: INSDC secondary accession

text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 14

text: 100uM betamethasone


text: live

characteristic: INSDC status

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 13

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 12

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 11

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 10

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 9

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 8

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 7

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 6

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 5

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 4

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 15

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 14

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 13

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 11

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 10

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 9

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 8

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 7

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 6

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 5

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 4

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 3

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 2

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 1

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 24

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 23

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 22

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 21

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 20

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 19

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 9

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 8

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 7

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 6

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 5

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 4

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 3

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 2

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 1

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 24

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 23

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 22

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 21

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 20

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 19

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 18

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 12

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 17

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant control 16

text: Control: 0.2% ethanol


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 24

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 23

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 22

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 21

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 20

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 19

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 18

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 17

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 16

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 15

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 14

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 13

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 12

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 11

text: 100uM betamethasone


text: live

text: Generic

text: GR mutant

text: Danio rerio

text: Dissected larval head

text: GR mutant betamethasone-treated 10

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 19

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 18

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 17

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 16

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 15

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 14

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 13

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 12

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 11

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 10

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 9

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 8

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 7

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 6

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 5

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 4

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 3

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 2

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 1

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 3

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 2

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type betamethasone-treated 1

text: 100uM betamethasone


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 24

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 23

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 22

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 21

text: Control: 0.2% ethanol


text: live

text: Generic

text: Wild-type

text: Danio rerio

text: Dissected larval head

text: GR wild-type control 20

text: Control: 0.2% ethanol


text: Shaoxing University, China

text: live

text: Invertebrate

text: 1-year old

characteristic: age

text: culture strain

characteristic: breed

characteristic: collection date

text: China: JInhua City

characteristic: geo loc name

text: day 0 after grafting operation, biological replicate 1

characteristic: isolate

text: freshwater pond

characteristic: isolation source

text: Sinohyriopsis cumingii

text: pearl sac

characteristic: tissue


text: Shaoxing University, China

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 0 after grafting operation, biological replicate 2

text: freshwater pond

text: Sinohyriopsis cumingii

text: pearl sac

characteristic: title


text: Shaoxing University, China

text: live

text: Invertebrate

characteristic: SRA accession

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 0 after grafting operation, biological replicate 3

text: freshwater pond

text: Sinohyriopsis cumingii

characteristic: organism

text: pearl sac


characteristic: External Id

text: Shaoxing University, China

characteristic: INSDC last update

text: live

text: Invertebrate

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 0 after grafting operation, biological replicate 4

text: freshwater pond

text: Sinohyriopsis cumingii

text: pearl sac


text: Shaoxing University, China

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 6 after grafting operation, biological replicate 1

text: freshwater pond

text: Sinohyriopsis cumingii

text: pearl sac


text: Shaoxing University, China

text: live

text: Invertebrate

text: 1-year old

characteristic: age

text: culture strain

characteristic: breed

text: China: JInhua City

text: day 6 after grafting operation, biological replicate 2

text: freshwater pond

text: Sinohyriopsis cumingii

text: pearl sac


text: Shaoxing University, China

text: live

text: Invertebrate

text: 1-year old

text: culture strain

characteristic: collection date

text: China: JInhua City

characteristic: geo loc name

text: day 6 after grafting operation, biological replicate 3

text: freshwater pond

text: Sinohyriopsis cumingii

text: pearl sac


text: Shaoxing University, China

text: live

text: Invertebrate

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 8 after grafting operation, biological replicate 1

characteristic: isolate

text: freshwater pond

characteristic: isolation source

text: Sinohyriopsis cumingii

text: pearl sac


text: Shaoxing University, China

characteristic: INSDC center name

text: live

text: Invertebrate

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 8 after grafting operation, biological replicate 2

text: freshwater pond

text: Sinohyriopsis cumingii

text: pearl sac

characteristic: tissue


text: Shaoxing University, China

characteristic: INSDC first public

text: live

text: Invertebrate

characteristic: NCBI submission model

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 8 after grafting operation, biological replicate 3

text: freshwater pond

text: Sinohyriopsis cumingii

text: pearl sac


text: Shaoxing University, China

text: live

text: Invertebrate

characteristic: NCBI submission package

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 12 after grafting operation, biological replicate 1

text: freshwater pond

text: Sinohyriopsis cumingii

text: pearl sac

characteristic: title


text: Shaoxing University, China

text: live

text: Invertebrate

characteristic: SRA accession

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 12 after grafting operation, biological replicate 2

text: freshwater pond

text: Sinohyriopsis cumingii

characteristic: organism

text: pearl sac


characteristic: External Id

text: Shaoxing University, China

characteristic: INSDC last update

text: live

text: Invertebrate

text: 1-year old

text: culture strain

text: China: JInhua City

text: day 12 after grafting operation, biological replicate 3

text: freshwater pond

text: Sinohyriopsis cumingii

text: pearl sac


name: California sea lion sample for G10K-VGP reference genome

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

text: MMPA 18786

characteristic: Permits

text: Juvenile

characteristic: biomaterial provider

text: Frances Gulland and Jochen Wolf

characteristic: collected by

text: As an apex marine predator, the California sea lion is an important indicator species for the impact of anthropogenic pollution on ocean health. It further serves as a physiological and evolutionary model to study mammalian aquatic adaptation, and contributes to our understanding of the genetic and environmental roles in carcinogenesis. The sample of a male individual was provided by The Marine Mammal Center in Sausalito, California, U.S.A. (Permit #MMPA 18786), and was used to generate a chromosomal level reference assembly as part of the G10K-VGP Project.

characteristic: description

text: USA:California

text: 37.858768 N 122.484010 W

characteristic: lat lon

text: Zalophus californianus

text: male

characteristic: sex

text: Fresh

text: Algonquian

characteristic: subject ID

text: Blood

text: Animal sample from Zalophus californianus

text: EDTA

characteristic: treatment


name: New Caledonian crow sample for G10K-VGP reference genome

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: 2558-2017/ARR/DENV, with ethical approval from the University of St Andrews, UK

characteristic: Permit #

text: Adult

characteristic: age

text: Christian Rutz, University of St Andrews, UK

text: Matthew Steele

characteristic: collection date

text: The New Caledonian crow (Corvus moneduloides) is endemic to the island of New Caledonia in the South Pacific. The species is renowned for its habit of manufacturing tools from plant materials, to extract prey from deadwood and vegetation. The sample was collected as part of a long-term field study led by Christian Rutz, from the University of St Andrews, and used to generate a chromosomal level reference assembly as part of the G10K-VGP Project.

text: University of St Andrews, UK

characteristic: funding

text: New Caledonia: near Bourail

characteristic: geo loc name

characteristic: isolate

text: 21.599296 S 165.398128 E

text: Corvus moneduloides

text: female

text: snap-frozen at -80 C

text: Ring Band # FS66281

characteristic: subject id

text: Blood

characteristic: tissue

text: Model organism or animal sample from Corvus moneduloides

text: 95% EtOH


name: Common marmoset sample for G10K-VGP reference genome

characteristic: External Id

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission package

text: USDA 16896

characteristic: Permit

characteristic: SRA accession

text: 3 months

text: Winrich Freiwald, The Rockefeller University

characteristic: biomaterial provider

characteristic: birth date

text: Rockefeller University

characteristic: birth location

text: Stephanie Marcus and Margaret Fabiszak

characteristic: collected by

text: The common marmoset (Callithrix jacchus) is a small, social monkey native to Brazil. With numerous attributes making it advantageous to study in the laboratory, the marmoset has become a prominent model in biomedical research. A trio of samples were collected from a male juvenile (this submission) and its parents by Stephanie Marcus of Lab of Erich Jarvis in the colony of the Winrich Freiwald Lab at The Rockefeller University, and were used to generate a high-quality reference genome as part of the G10K-VGP.

text: juvenile

characteristic: dev stage

text: USA: New York

text: 40.762676 N 73.955541 W

text: Callithrix jacchus

characteristic: organism

text: male

text: flash frozen

text: muscle

text: Animal sample from Callithrix jacchus

characteristic: title


name: European Blackcap sample for G10K-VGP reference genome

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: AZ 3104-4/021/0033

characteristic: Permits

text: Juvenile

characteristic: age

text: Miriam Liedvogel, MPI Evolutionary Biology

text: Miriam Liedvogel

characteristic: collection date

text: European Blackcaps show large variability in migratory phenotypes (and little else), including propensity to migrate, distance and direction. Blackcaps are a perfect system to study the genetics of migration. This sample (Permit# AZ 3104-4/021/0033, Funding : Max Planck Society, Grant ID : MPRG grant to ML) was collected within the core line of research in the Liedvogel Lab, MPI Evolutionary Biology, studying the genomic architecture of migratory traits, and used to generate chromosomal reference assembly as part of the G10K-VGP Project and the B10K Project.

characteristic: description

text: Max Planck Society to ML

characteristic: funding

text: Spain: Tarifa

characteristic: geo loc name

characteristic: isolate

text: 36.01393 N 5.60695 W

characteristic: lat lon

text: Sylvia atricapilla

text: female

characteristic: sex

text: Frozen

text: blood

text: Animal sample from Sylvia atricapilla

text: 100% EtOH

characteristic: treatment


characteristic: External Id

text: CIC bioGUNE

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: 8 weeks

text: Mus musculus

text: Colon macrophages

characteristic: strain

text: Colon macrophages

characteristic: tissue

text: KO_PP_24: Colon macrophages from MCJ deficient mice 10 Ant+DSS+


text: CIC bioGUNE

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: 8 weeks

characteristic: age

text: Mus musculus

characteristic: organism

text: Colon macrophages

text: Colon macrophages

text: KO_PP_23: Colon macrophages from MCJ deficient mice 9 Ant+DSS+

characteristic: title


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: KO_PP_22: Colon macrophages from MCJ deficient mice 8 Ant+DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: KO_NP_21: Colon macrophages from MCJ deficient mice 3 Ant-DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: KO_NP_20: Colon macrophages from MCJ deficient mice 2 Ant-DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: KO_NP_19: Colon macrophages from MCJ deficient mice 1 Ant-DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: KO_NN_14: Colon macrophages from MCJ deficient mice 2


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: KO_NN_13: Colon macrophages from MCJ deficient mice 1


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: WT_PP_12: Colon macrophages from WT mice 12 Ant+DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: WT_PP_11: Colon macrophages from WT mice 11 Ant+DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: WT_PP_10: Colon macrophages from WT mice 10 Ant+DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: WT_NP_9: Colon macrophages from WT mice 6 Ant-DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: WT_NP_8: Colon macrophages from WT mice 5 Ant-DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: WT_NP_7: Colon macrophages from WT mice 4 Ant-DSS+


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: WT_NN_3: Colon macrophages from WT mice 3


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: WT_NN_2: Colon macrophages from WT mice 2


text: CIC bioGUNE

text: live

text: Generic

text: 8 weeks

text: Mus musculus

text: Colon macrophages

text: Colon macrophages

text: WT_NN_1: Colon macrophages from WT mice 1


text: The Salk Institute for Biological Studies

text: live

text: Model organism or animal

characteristic: breed

characteristic: cultivar

characteristic: ecotype

characteristic: isolate

text: Mus musculus

text: single cell RNA-Seq

characteristic: processed for

text: biological replicate 1

characteristic: replicates

text: T cells and ILCs

text: ['acute DSS', 'Corn Oil']


characteristic: External Id

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

text: Mus musculus

text: single cell RNA-Seq

text: biological replicate 1

characteristic: sex

text: T cells and ILCs

text: ['acute DSS', 'FexD']

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

text: single cell RNA-Seq

text: biological replicate 2

characteristic: strain

text: T cells and ILCs

characteristic: tissue

text: ['acute DSS', 'Corn Oil']


text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: age

characteristic: breed

characteristic: cultivar

text: Mus musculus

characteristic: organism

text: single cell RNA-Seq

text: biological replicate 2

text: T cells and ILCs

characteristic: title

text: ['acute DSS', 'FexD']


characteristic: External Id

text: Weill Cornell Medicine

characteristic: INSDC last update

text: live

text: Generic

text: Reprogrammable mouse embryonic fibroblasts (MEFs) prepared from rtTA3-OKSM embryos (embryonic day-E13.5) that were heterozygous for the Oct4-GFP reporter, OKSM cassette and rtTA3.

characteristic: cell tye

text: cultured in DMEM

characteristic: culture condition

text: Mus musculus


text: Weill Cornell Medicine

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: cell line

text: Embryonic stem cells

text: cultured in 2i condition

text: Mus musculus


text: Weill Cornell Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Embryonic stem cells

text: cultured in 2i condition

text: Mus musculus


text: Shandong University at Weihai

text: live

text: MIGS.ba

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: China: Weihai

characteristic: geo loc name

text: Persicimonas caeni

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bradymonadales sp. YN101

text: type strain of Persicimonas caeni

characteristic: type-material


Enterobacter sp SM1

text: Albert Einstein College of Medicine

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: Tax ID

text: Hao Li

characteristic: collected by

characteristic: collection date

text: USA: Bronx, NY

text: Mus musculus C57BL/6

characteristic: host

characteristic: isolate-name-alias

text: feces of conventional mice

characteristic: isolation source

text: Enterobacter asburiae

characteristic: organism

text: whole organism

characteristic: sample type

text: Microbe sample from Enterobacter asburiae


characteristic: External Id

text: Ocean University of China

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Pacific Ocean

text: sea water

text: Profundirhabdus halotolerans

text: cell culture

text: Microbe sample from Profundirhabdus halotolerans

characteristic: title

text: type strain of Profundirhabdus halotolerans


name: Human sample for G10K-VGP reference trio based genome assembly, male child

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Human

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Jarvis Lab, Rockefeller University

characteristic: biomaterial provider

text: To study human basic biology and disease, high-quality, error-free, complete genome assemblies are needed. For this purpose, this trio of samples of a son (this submission) and parents were collected at the Rockefeller University to generate a high-quality, haplotype phased, reference genome as part of the G10K-VGP (Vertebrate Genomes Project). This sample will be used to continue to benchmark high-quality human genome assemblies.

characteristic: description

text: mixed: African, European, Native American

characteristic: ethnicity

text: normal

characteristic: isolate

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: tissue

text: Human sample from trio of individuals, son

text: EDTA or heparin

characteristic: treatment


The gill tissue of Hyriopsis cumingii

characteristic: External Id

text: Center for Ecological and Environmental Sciences

text: live

text: Invertebrate

characteristic: NCBI submission model

characteristic: collection date

text: Pacific Ocean

characteristic: geo loc name

text: Pearl mussel

characteristic: host

text: China

text: Sinohyriopsis cumingii

characteristic: organism

text: gill

text: Invertebrate sample from Hyriopsis cumingii


The ovary tissue of Hyriopsis cumingii

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

text: Pacific Ocean

text: Pearl mussel

text: China

text: Sinohyriopsis cumingii

text: ovary

characteristic: title


The mantle tissue of Hyriopsis cumingii

text: live

text: Invertebrate

characteristic: NCBI submission package

characteristic: SRA accession

text: Pacific Ocean

text: Pearl mussel

text: China

text: Sinohyriopsis cumingii

text: mantle


text: Faculty of Pharmaceutical Sciences, Chulalongkorn University

text: live

text: Microbe, viral or environmental

text: Thailand: Bangkok

text: Moeroris amara

text: root

characteristic: isolation source

text: Nonomuraea sp. PA05

text: bacteria

characteristic: sample type

characteristic: strain

text: Microbe sample from Nonomuraea sp. PA05


characteristic: External Id

text: Li lab, School of Medicine, University of California Irvine

text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

characteristic: cell line

characteristic: chip antibody

text: Homo sapiens

text: MCF7 cells, shCtrl_-E2_Input_ChIP-seq

text: control vector, - estrogen

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission model

text: Breast Adenocarcinoma cell line MCF7

text: FOXA1 (ab5089 from Abcam)

text: Homo sapiens

text: MCF7 cells, shCtrl_+E2_FOXA1_ChIP-seq

text: control vector, + estrogen


text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: FOXA1 (ab5089 from Abcam)

text: Homo sapiens

characteristic: organism

text: MCF7 cells, shCtrl_-E2_FOXA1_ChIP-seq

text: control vector, - estrogen


characteristic: INSDC center name

text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: ERalpha (SC-8002 from Santa Cruz Biotech)

text: Homo sapiens

text: MCF7 cells, shCtrl_+E2_ERalpha_ChIP-seq

text: control vector, + estrogen


characteristic: INSDC first public

text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, shCtrl_-E2_ERalpha_ChIP-seq

text: control vector, - estrogen


characteristic: INSDC last update

text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, siHOTAIRM1_rep3 RNA-seq

text: HOTAIRM1 knockdown


characteristic: INSDC secondary accession

text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, siHOTAIRM1_rep2 RNA-seq

text: HOTAIRM1 knockdown


text: live

characteristic: INSDC status

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, siHOTAIRM1_rep1 RNA-seq

text: HOTAIRM1 knockdown


text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, siControl_rep3 RNA-seq

characteristic: title

text: control vector


text: live

text: Generic

characteristic: NCBI submission package

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, siControl_rep2 RNA-seq

text: control vector


text: live

text: Generic

characteristic: SRA accession

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, siControl_rep1 RNA-seq

text: control vector


text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, shHot_+E2_Input_ChIP-seq

text: shHOTAIRM1, + estrogen


text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, shHot_-E2_Input_ChIP-seq

text: shHOTAIRM1, - estrogen


text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: FOXA1 (ab5089 from Abcam)

text: Homo sapiens

text: MCF7 cells, shHot_+E2_FOXA1_ChIP-seq

text: shHOTAIRM1, + estrogen


text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: FOXA1 (ab5089 from Abcam)

text: Homo sapiens

text: MCF7 cells, shHot_-E2_FOXA1_ChIP-seq

text: shHOTAIRM1, - estrogen


text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, shHot_+E2_ERalpha_ChIP-seq

text: shHOTAIRM1, + estrogen


text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, shHot_-E2_ERalpha_ChIP-seq

text: shHOTAIRM1, - estrogen


text: live

text: Generic

text: Breast Adenocarcinoma cell line MCF7

text: Homo sapiens

text: MCF7 cells, shCtrl_+E2_Input_ChIP-seq

text: control vector, + estrogen


text: Zhejiang University

text: live

text: Model organism or animal

characteristic: age

text: Mus musculus

text: male

characteristic: sex

text: spleen

characteristic: tissue

text: cd4+ T cell from male es mouse


characteristic: External Id

text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

characteristic: host

text: Acinetobacter sp. 1207_04

text: marine bivalve

characteristic: strain

text: Microbe sample from Acinetobacter sp. 1207_04


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Leucobacter sp. 1207-22

text: marine bivalve

text: Microbe sample from Leucobacter sp. 1207-22


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Pseudoalteromonas sp. 1181_04

text: marine bivalve

text: Microbe sample from Pseudoalteromonas sp. 1181_04


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalves

text: Shewanella sp. 1180_01

text: marine bivalve

text: Microbe sample from Shewanella sp. 1180_01


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Psychrobacter sp. 1176_08

text: marine bivalve

text: Microbe sample from Psychrobacter sp. 1176_08


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalves

text: Pseudomonas sp. 1176_21

text: marine bivalve

text: Microbe sample from Pseudomonas sp. 1176_21


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Pseudomonas sp. 1176_24

text: marine bivalve

text: Microbe sample from Pseudomonas sp. 1176_24


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Pseudomonas putida

text: marine bivalve

text: Microbe sample from Pseudomonas putida


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Pseudomonas sp. 1152_12

text: marine bivalve

text: Microbe sample from Pseudomonas sp. 1152_12


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Stenotrophomonas sp. 1121-B15

text: marine bivalve

text: Microbe sample from Stenotrophomonas sp. 1121-B15


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Pseudomonas sp. 1121_17

text: marine bivalve

text: Microbe sample from Pseudomonas sp. 1121_17


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Pseudomonas sp. 1121_6

text: marine bivalve

text: Microbe sample from Pseudomonas sp. 1121_6


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Pseudomonas sp. 910_21

text: marine bivalve

text: Microbe sample from Pseudomonas sp. 910_21


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalve

text: Pseudomonas sp. 910_23

text: marine bivalve

text: Microbe sample from Pseudomonas sp. 910_23


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalves

text: Pseudomonas sp. 784_13

text: marine bivalve

text: Microbe sample from Pseudomonas sp. 784_13


text: Havforskningsinstituttet

text: live

text: Microbe, viral or environmental

text: Norway

text: marine bivalves

text: Pseudomonas sp. 784_19

text: marine bivalve

text: Microbe sample from Pseudomonas sp. 784_19


text: Molecular biology, Radboud Institute for Molecular Life Sciences

text: live

text: Generic

text: HeLa

characteristic: cell type

text: Homo sapiens

text: Human cervical cancer cell line

text: DMSO(Veh control) for 4 hours

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission model

text: HeLa

text: Homo sapiens

characteristic: organism

text: Human cervical cancer cell line

text: 100 nM triamcinolone acetonide(TA) for 4 hours.


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: Human acute monocytic leukemia cell line

text: DMSO(Veh control) for 4 hours


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Monocytes

text: Homo sapiens

text: Adult Human Peripheral Blood


text: live

characteristic: INSDC status

text: Generic

text: Monocytes

text: Homo sapiens

text: Adult Human Peripheral Blood

characteristic: title

text: DMSO(Veh control) for 4 hours


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens


text: tianjin

text: live

text: Microbe, viral or environmental

text: China: Beijing

text: Homo sapiens

text: gut

text: Klebsiella variicola

text: tissue sample

text: Microbe sample from Klebsiella variicola


characteristic: 10x genomics library kit

text: Miller, Cell and Developmental Biology, Vanderbilt University

text: live

text: Generic

characteristic: cells targeted

text: 87% L4

characteristic: developmental stage

text: Caenorhabditis elegans

text: ceh-34::mCherry+ neurons

text: NC3583; stIs10447 [ceh-34p::HIS-24::mCherry + unc-119(+)]; evIs111 [F25B3.3::GFP + dpy-20(+)]

text: Pharyngeal neurons


characteristic: External Id

text: live

text: Generic

text: 93% L4

text: Caenorhabditis elegans

text: acr-2::GFP+ neurons

text: CZ631; juIs14 [acr-2p::GFP + lin-15(+)] IV

text: acr-2 expressing neurons


text: live

text: Generic

text: 90% L4

text: Caenorhabditis elegans

text: tph-1::GFP and ceh-10::GFP+ neurons

text: NC3580; zdIs13 [tph-1p::GFP] IV; hpIs202 [ceh-10p::GFP + lin-15(+)]

characteristic: strain

text: Serotonergic and ceh-10 + neurons


text: live

text: Generic

text: 90% L4

text: Caenorhabditis elegans

text: cho-1::SL2::YFP+ neurons

text: NC3579; otIs354 [cho-1(fosmid)::SL2::YFP::H2B]; otIs355 [rab-3(prom1)::2xNLS-tagRFP] IV

text: Cholinergic neurons 2


text: live

text: Generic

text: 90% L4

text: Caenorhabditis elegans

text: cho-1::SL2::YFP+ neurons

text: Cholinergic neurons 1


text: live

text: Generic

text: 74% L4, 18% early adult

text: Caenorhabditis elegans

text: ift-20::TagRFP+ neurons

text: OH11157; pha-1(e2123) III; otIs393 [ift-20::NLS::tagRFP + pha-1(+)]

text: Ciliated sensory neurons


text: live

text: Generic

text: 93% L4

text: Caenorhabditis elegans

text: unc-3::mCherry+ neurons

text: OH11746; pha-1(e2123) III; otIs447 [unc-3p::mCherry + pha-1(+)] IV

text: unc-3 expressing neurons


text: live

text: Generic

text: 79% L4, 21% L3

text: Caenorhabditis elegans

text: unc-47::GFP+ neurons

text: NC3582; oxIs12 [unc-47p::GFP + lin-15(+)] X; otIs355 [rab-3p(prom1)::2xNLS::tagRFP] IV

text: GABAergic neurons 2


text: live

text: Generic

text: 71% L4, 25% L3

text: Caenorhabditis elegans

text: eat-4::mCherry+ neurons

text: OH9625; otIs292 [eat-4::mCherry + rol-6(su1006)]

text: Glutamatergic neurons


text: live

text: Generic

text: 79% L4, 20% L3

text: Caenorhabditis elegans

text: nmr-1-GFP+ neurons

text: NC3572; akIs3 [nmr-1::GFP + lin-15(+)] V; otIs355 [rab-3p(prom1)::2x-NLS::tagRFP] IV

text: nmr-1 expressing neurons


text: live

text: Generic

text: 68% L4, 28% early adult

text: Caenorhabditis elegans

text: unc-47::GFP+ neurons

text: GABAergic neurons 1


text: live

text: Generic

text: 90% L4

text: Caenorhabditis elegans

text: All C. elegans neurons (rab-3::tagRFP+ neurons)

text: OH10689; otIs355 [rab-3p(prom1)::2xNLS::tagRFP] IV

text: Pan-neural 2


text: live

text: Generic

text: 90% L4

text: Caenorhabditis elegans

text: Pan-neural 1


Acinetobacter pollinis strain FNA3

text: Cornell University

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: PO:0025082 | flower nectar

text: USA: Jasper Ridge Biological Preserve, Stanford (California)

characteristic: geo loc name

text: Diplacus (Mimulus) aurantiacus (Phrymaceae)

characteristic: host

text: luria broth

text: 37.404001 N 122.228781 W

characteristic: lat lon

text: Acinetobacter pollinis

text: IJSEM

text: MIGS Cultured Bacterial/Archaeal sample from Acinetobacter pollinis


Acinetobacter pollinis strain FNA11

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.ba

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

text: Keywords: GSC:MIxS;MIGS:6.0

text: PO:0025082 | flower nectar

text: luria broth

text: 37.404001 N 122.228781 W

text: Acinetobacter pollinis

characteristic: organism

text: IJSEM


Acinetobacter pollinis strain SCC474

text: Cornell University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

text: Keywords: GSC:MIxS;MIGS:6.0

text: PO:0025082 | flower nectar

text: USA: Stebbins Cold Canyon Reserve (California)

text: Scrophularia californica (Scrophulariaceae)

text: luria broth

text: 38.512375 N 122.096530 W

text: Acinetobacter pollinis

text: IJSEM

characteristic: title


Acinetobacter pollinis strain SCC477

text: Cornell University

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:6.0

text: PO:0025082 | flower nectar

text: luria broth

text: 38.512375 N 122.096530 W

text: Acinetobacter pollinis

text: IJSEM

text: type strain of Acinetobacter pollinis

characteristic: type material


Acinetobacter coldeni strain EC115

characteristic: External Id

text: Cornell University

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

text: Keywords: GSC:MIxS;MIGS:6.0

text: PO:0025082 | flower nectar

text: USA: UC Davis campus (California)

text: Epilobium canum (Onagraceae)

text: luria broth

text: 38.53892 N 121.75971 W

text: Acinetobacter rathckeae

text: IJSEM

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Acinetobacter rathckeae


Acinetobacter coldeni EC24

text: Cornell University

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: PO:0025082 | flower nectar

text: USA: UC Davis campus (California)

text: Epilobium canum (Onagraceae)

text: luria broth

text: 38.53892 N 121.75971 W

text: Acinetobacter rathckeae

text: IJSEM

text: type strain of Acinetobacter rathckeae


Acinetobacter bareti strain B10A

text: Cornell University

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.host-associated

text: Keywords: GSC:MIxS;MIGS:6.0

text: NCBITaxon:7460 | gut of Gut of Apis mellifera

text: USA: Stanford campus (California)

characteristic: geo loc name

text: Apis mellifera

characteristic: host

text: luria broth

text: 37.42868 N 122.16977 W

text: Acinetobacter baretiae

text: IJSEM

text: MIGS Cultured Bacterial/Archaeal sample from Acinetobacter baretiae

text: type strain of Acinetobacter baretiae


Acinetobacter bareti strain B5B

text: Cornell University

characteristic: INSDC center name

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.host-associated

text: Keywords: GSC:MIxS;MIGS:6.0

text: NCBITaxon:7460 | Mouthparts of Gut of Apis mellifera

text: USA: Stanford campus (California)

text: Apis mellifera

text: luria broth

text: 37.42868 N 122.16977 W

characteristic: lat lon

text: Acinetobacter baretiae

text: IJSEM


name: Nile rat tissue for G10K-VGP trio reference genome child

characteristic: INSDC first public

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: USDA Registration Number: 93-R-0438; CA Department of Fish & Wildlife: Restricted Species Permit # 2416

characteristic: Permits

text: 21 weeks

characteristic: age

text: University of California Santa Barbara; Morgridge Institute for Research

characteristic: biomaterial provider

characteristic: birth date

text: Huishi Toh

characteristic: collected by

text: Arvicanthis Niloticus, commonly known as the Nile rat or African grass rat, is a valuable model organism used in various areas of research including behavioral neuroscience, nutrition science, ophthalmology and evolutionary biology. Native to Northern Africa, this diurnal rodent has a diet primarily of leaves and stems, supplemented with insects, seeds, and fruits. However, when maintained in a laboratory environment with a rodent chow diet that has high caloric content relative to its native diet, both sexes rapidly develop diet-induced diabetes. By mimicking the disease etiology, the Nile rat provides an important animal model to study the causality of type 2 diabetes and is a suitable pre-clinical model. These samples were collected from a male and his parents in a laboratory colony of Huishi Toh and James Thomson at University of California, Santa Barbara, and used to generate chromosomal level reference assembly as part of the G10K-VGP project.

text: adult

characteristic: dev stage

text: USA: Santa Barbara

characteristic: isolate

text: 34.41938 N 119.69905 W

text: Arvicanthis niloticus

text: male

characteristic: sex

characteristic: specimen voucher

text: Frozen

text: Spleen (genome), brain & testis (transcriptome)

characteristic: tissue

text: Animal sample from Arvicanthis niloticus

text: Frozen (dry ice)

characteristic: treatment


name: Stoat sample for G10K-VGP reference genome

characteristic: External Id

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission package

characteristic: SRA accession

text: 1 year

text: Manaaki Whenua Landcare Research, Lincoln, New Zealand

text: Andrew Veale, Tim Cruickshank

text: The Stoat (known as the short-tailed weasel in North America) is one of the smallest true carnivores. It is naturally distributed across most of the Holarctic, including most of northern Europe, UK, Ireland, Canada and the northern USA. Stoats were introduced to New Zealand in the 1880s and 1890s, primarily founded from stock caught in Lincolnshire, in northern England. Stoats are now an invasive species in New Zealand where they threaten many indigenous birds. This specimen was collected from the wild in native forest in the Coromandel, New Zealand by Tim Cruikshank and Andrew Veale to generate a chromosome level reference assembly as part of the G10K-VGP project, in association with the Biological Heritage Science Challenge and Predator Free 2050.

characteristic: description

text: adult

text: New Zealand: Coromandel

characteristic: geo loc name

text: 37.304717 S 175.755071 E

text: Mustela erminea

characteristic: organism

text: male

text: frozen

characteristic: subject ID

text: spleen (genome), liver, muscle, kidney

text: Animal sample from Mustela erminea

characteristic: title

text: frozen


name: Linnaeus's two-toed sloth sample for G10K-VGP reference genome

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: Leibniz Institute for Zoo and Wildlife, Berlin, Germany

characteristic: biomaterial provider

characteristic: birth date

text: Gudrun Wibbelt

characteristic: collected by

characteristic: collection date

text: Choloepus didactylus, commonly known as Linnaeus's two-toed sloth, is a native species from South America. Extant sloths are represented by only two genera, Choloepus and Bradypus, and present the slowest metabolism among all mammals. This sample was collected from a Tierpark Berlin male specimen known as Lama Su by researchers from the Leibniz Institute for Zoo and Wildlife Research, and is being used to generate the first chromosome level genome of a sloth for the G10K-VGP Project. This genome is also the first Pilosa and Xenarthra representative of Phase 1 of the VGP Ordinal Project.

text: adult

characteristic: dev stage

text: Germany: Tierpark, Berlin

text: 52.520008 N 13.404954 E

characteristic: lat lon

text: Choloepus didactylus

text: male

text: frozen

text: Lama Su

text: spleen

text: Animal sample from Choloepus didactylus

text: frozen


name: Green Sea turtle sample for G10K-VGP reference genome

characteristic: External Id

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

text: 17 years

characteristic: age

text: Israel Sea Turtle Rescue Centre, Michmoret, Israel

text: Israel, Mediterranean Sea

characteristic: birth location

text: Yaron Tikochinski

text: Chelonia mydas is a species popularly known as green sea turtle. Its range extends from tropical to subtropical seas around the world. They migrate long distances between feeding regions and hatching beaches. Chelonia mydas are currently endangered of becoming extinct (IUCN Red List of Threatened Species) and is protected from exploitation in most countries. This sample originated from the Mediterranean Sea, was collected by the Israel's Sea Turtle Rescue Center, and was used to generate a chromosome level reference genome as part of the G10K-VGP Project.

text: adult

text: Israel: Mediterranean Sea

characteristic: isolate

text: 31.814194 N 34.753376 E

text: Chelonia mydas

text: DE-E-01556/18 (CITES)

characteristic: permits

text: male

characteristic: sex

text: frozen

text: blood

characteristic: tissue

text: Model organism or animal sample from Chelonia mydas

text: frozen

characteristic: treatment


Luteimonas sp. LNNU 24178

text: Liaoning Normal University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: we sequenced the genome of Luteimonas sp. LNNU 24178 for further insight into the adaptation of environment and study on the phylogeny of Luteimonas.

characteristic: description

text: China

characteristic: geo loc name

text: rhizosphere soil

characteristic: isolation source

text: Luteimonas suaedae

characteristic: organism

text: cell culture

characteristic: sample type

text: LNNU 24178

characteristic: strain

text: Microbe sample from Luteimonas sp.

characteristic: title

text: type strain of Luteimonas suaedae

characteristic: type-material


characteristic: External Id

text: University of Trento

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIGS:6.0

text: United Kingdom: Aberdeen

text: Homo sapiens

characteristic: host

text: cannot supply PMID or url

text: 57.1497 N 2.0943 W

characteristic: lat lon

text: Agathobacter rectalis

text: MIGS Cultured Bacterial/Archaeal sample from Agathobacter rectalis


text: University of Trento

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

text: United Kingdom: Aberdeen

text: Homo sapiens

text: cannot supply PMID or url

text: 57.1497 N 2.0943 W

text: Agathobacter rectalis


name: American flamingo sample for G10K-VGP reference genome

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 3 years

characteristic: age

text: Copenhagen Zoo, Denmark

characteristic: biomaterial provider

characteristic: birth date

text: Copenhagen Zoo

characteristic: birth location

text: Mads Bertelsen

characteristic: collected by

text: The American Flamingo (Phoenicopterus ruber) is found throughout the Caribbean and is a non-migratory bird. It is a highly social bird that breeds in large colonies. Its characteristic pink-orange color is caused by carotenoid pigements in the food (shrimp, plankton, algae, and crustaceans) they eat. This sample was collected by Mads Bertelsen from a female (leg band GZG) that lived at the Copenhagen Zoo in Denmark, and procured by Tom Gilbert to generate a chromosome level reference assembly as part of the G10K-VGP and B10K Projects.

text: adult

characteristic: dev stage

text: Denmark: Copenhagen Zoo

characteristic: isolate

text: 55.67278 N 12.52139 E

text: Phoenicopterus ruber ruber

text: female

characteristic: sex

text: frozen

text: ruber

characteristic: sub species

text: GZG chip leg band

characteristic: subject ID

text: blood

characteristic: tissue

text: Animal sample from Phoenicopterus ruber ruber

text: frozen

characteristic: treatment


characteristic: External Id

text: Jiangnan University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: missing

text: China

text: Homo sapiens

characteristic: host

text: Ligilactobacillus salivarius

characteristic: organism

text: fecal sample

characteristic: strain

text: Microbe sample from Ligilactobacillus salivarius

characteristic: title


Rhodococcus opacus DSM 44188 RML

text: US Geological Survey

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: culture-collection

text: Germany: Tubingen

text: soil

text: Rhodococcus opacus

text: Bacterial isolate

text: DSM 44188

text: Microbe sample from Rhodococcus opacus


name: Swainson's thrush sample for G10K-VGP reference genome

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Texas A&M University

characteristic: biomaterial provider

text: Kira Delmore

characteristic: collected by

characteristic: collection date

text: The Swainson's thrush (Catharus ustulatus) is medium size songbird, known for its long migrations in the Americas, from as far north in Canada to as far south as Argentina. The species is thought to be the most ancient of its genus in North America. This sample was collected by Kira Delmore from a female caught in Kamloops, Canada and used to generate a chromosome level reference assembly as part of the G10K-VGP Project.

characteristic: description

text: adult

characteristic: dev stage

text: Canada: Kamloops

characteristic: geo loc name

characteristic: isolate

text: 50.67613 N 120.33787 W

characteristic: lat lon

text: Catharus ustulatus

text: female

characteristic: sex

text: frozen

text: blood

text: Animal sample from Catharus ustulatus

text: Ethanol


characteristic: External Id

text: College of Life Science and Technology, Huazhong University of Science and Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.plant-associated

text: free living

text: normal

text: medicinal plant

characteristic: cultivar

text: 16 m

characteristic: depth

text: The plant metagenome of four TCM preparations

text: microbes

characteristic: ecotype

text: four TCM preparations bought from 2 manufacturers with 3 batches

text: four TCM preparations; two manufacturers

text: environmental microbes

text: ITS2 and trnL

text: China: Wuhan

text: medicinal plant

characteristic: host

text: natural condition

text: TCMs

text: 30.6 N 114.3 E

text: plant metagenome

characteristic: organism

text: aerobic

text: microanaerobe

text: DNA extraction and PCR amplication

text: MIMARKS Specimen sample from plant metagenome


name: Carmine Bee-eater sample for G10K-VGP reference genome

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 3 years

characteristic: age

text: Copenhagen Zoo, Denmark

characteristic: biomaterial provider

text: Mads Bertelsen

characteristic: collected by

characteristic: collection date

text: The Northern Carmine Bee-eater (Merops nubicus nubicus) is part of the bee-eater family, Meropidae, and is also known as the Nubian bee-eater. It is a brightly-coloured bird and feeds primarily on bees and other flying insects, such as grasshoppers and locusts (description from the Avian Phylogenomics Project http://gigadb.org/dataset/101029). This sample was collected by Mads Bertelsen from a female that lived at the Copenhagen Zoo in Denmark (same animal as in BioSample SAMN02338310) and was used to generate a chromosome level reference assembly as part of the G10K-VGP and B10K Projects.

text: adult

text: Denmark: Copenhagen Zoo

text: 55.67278 N 12.52139 E

text: Merops nubicus

text: female

text: frozen

characteristic: subject ID

text: blood

characteristic: tissue

text: Animal sample from Merops nubicus

characteristic: title


name: Red-crested Turaco sample for G10K-VGP reference genome

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: 10 years

text: Copenhagen Zoo, Denmark

characteristic: birth date

text: Mads Bertelsen

text: The Red-crested Turaco (Tauraco erythrolophus) is endemic to western Angola to Congo, Africa, and is the National bird of Angola. It has deep barking call that has been described to sound like a jungle monkey. It is named after its very colorful red crested feathers on its head. This sample was collected by Mads Bertelsen from a female that lived at the Copenhagen Zoo in Denmark and was used to generate a chromosome level reference assembly as part of the G10K-VGP and B10K Projects.

characteristic: description

text: adult

characteristic: dev stage

text: Denmark: Copenhagen Zoo

characteristic: geo loc name

characteristic: isolate

text: 55.67278 N 12.52139 E

characteristic: lat lon

text: Tauraco erythrolophus

text: female

characteristic: sex

text: frozen

text: h1111 alu

text: blood

text: Animal sample from Tauraco erythrolophus


name: Ring-tailed lemur sample for G10K-VGP reference genome

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 9 months

characteristic: age

text: Copenhagen Zoo, Denmark

characteristic: biomaterial provider

text: Copenhagen Zoo

characteristic: birth location

text: Mads Bertelsen

characteristic: collected by

text: The ring-tailed lemur (Lemur cata) is primate that like other lemurs is endemic to Madagascar. It is recognized by the stripped black and white ring circles on its tail. They have been studied for the communication and cognitive abilities. They are the most popular lemurs in zoos worldwide. They are currently endangered in the wild (IUCN red list). This sample was collected by Mads Bertelsen from a male that lived at the Copenhagen Zoo in Denmark, procured by Tom Gilbert, and supported by Tomas Marques-Bonet at the Universitat Pompeu Fabra, Barcelona, for primate evolution investigations, to generate a chromosome level reference assembly as part of the G10K-VGP Project.

text: juvenile

text: Denmark: Copenhagen Zoo

text: 55.67278 N 12.52139 E

text: Lemur catta

characteristic: organism

text: male

text: frozen

text: spleen

text: Animal sample from Lemur catta

text: frozen

characteristic: treatment


name: Mute Swan sample for G10K-VGP reference genome

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: Max Planck Institute, Obstberg

text: Robert Kraus

characteristic: collection date

text: adult

text: Germany: Mainau

text: 50.149850 N 11.063270 E

text: Cygnus olor

text: male

text: frozen

characteristic: subject ID

text: muscle

characteristic: tissue

text: Animal sample from Cygnus olor

characteristic: title

text: ethanol


name: Great potoo sample for G10K-VGP reference genome

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Smithsonian National Museum of Natural History, Washington D.C.

text: O'Shea B.J., Gary Graves

text: The Great Potoo (Nyctibius grandis) is the largest bird of the Caprimulgiformes order. It is nocturnal, like owls, and has characteristics of owls. They inhabit tropical America from Mexico to Southern Brazil, and make moaning growl sounds throughout the night that gives some of the tropics it nights sound scape. This sample was collected from a female caught in Guyana by B.J. O'Shea, stored at the Smithsonian collection in Washington D.C., and procured by curator Gary Graves to generate a chromosome level reference assembly as part of the G10K-VGP and B10K Projects. The same sample was also used for the B10K family-level draft genome assembly labelled B10K-DU-001-56.

characteristic: description

text: adult

characteristic: dev stage

text: Guyana: St. Cuthbert's Mission Road, Linden Highway

characteristic: geo loc name

characteristic: isolate

text: 6.18 N 58.13 W

characteristic: lat lon

text: Nyctibius grandis

text: female

characteristic: sex

text: frozen

text: B13694 (Smithsonian tissue sample #)

text: muscle

text: Animal sample from Nyctibius grandis


name: Budgerigar sample for G10K-VGP reference genome daughter of trio

characteristic: External Id

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: SRA accession

text: 2 months

characteristic: age

text: New Mexico State University

characteristic: biomaterial provider

characteristic: birth date

text: New Mexico State University

characteristic: birth location

text: Timothy Wright, Justin Apodaca

characteristic: collected by

text: The budgerigar, also called the Australian Parakeet (Melopsittacus undulatus), is the most widely used parrot species for studying the neurobiology of vocal learning. It was the first parrot species where the vocal learning brain pathways was discovered, and found to uniquely have a core song learning system surrounded by a shell learning system, with the core similar to songbirds and hummingbirds (also vocal learners) and the shell unique to parrots. The brain pathways have convergent changes in gene regulation shared with human speech brain pathways. This sample was collected as part of a trio of samples (daughter in this case), by Timothy Wright and Justin Apodaca, supported by Erich D. Jarvis, and used to generate a high-quality reference genome of he daughter as part of the G10K-VGP Project and G10K Project.

text: juvenile

text: USA: New Mexico State University

text: 32.278282 N 106.74994 W

text: Melopsittacus undulatus

characteristic: organism

text: female

text: frozen

text: 383YGHF, daughter of trio

characteristic: subject id

text: Blood

text: Animal sample from Melopsittacus undulatus

text: ethanol

characteristic: treatment


name: New Zealand spotty wrasse sample for G10K-VGP reference genome

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: AEC 2017-05

characteristic: Permit #

text: Adult

text: Toi Ohomai Institute of Technology, University of Otago

text: Simon Muncaster, Erica Todd, Neil Gemmell

characteristic: collection date

text: The New Zealand spotty wrasse is a protogynous hermaphrodite that undergoes socially-cued female-to-male sex change as a usual part of the lifecycle. It is endemic to coastal waters of New Zealand. This sample was provided by the Toi Ohomai Institute of Technology and University of Otago, and used to generate a chromosomal level reference assembly as part of the G10K-VGP Project. The project was funded by grants to Professor Neil Gemmell from the Royal Society of New Zealand Marsden Fund and the University of Otago.

characteristic: description

text: adult

text: Royal Society of New Zealnd Marsden Fund UOO1308

characteristic: funding

text: New Zealand: Tauranga

text: 37.39219 S 176.09222 E

text: Notolabrus celidotus

text: male

text: frozen

text: spotty

characteristic: subject ID

text: liver

characteristic: tissue

text: Animal sample from Notolabrus celidotus

characteristic: title

text: flash frozen


name: The Microbe sample of Escherichia coli strain WCHEC115106

characteristic: External Id

text: West China Hospital, Sichuan University

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: alias

text: China: Chengdu, Sichuan

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Escherichia coli

text: pure culture

characteristic: sample type

characteristic: strain


name: The Microbe sample of Escherichia coli strain WCHEC025157

text: West China Hospital, Sichuan University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: China: Chengdu, Sichuan

text: Homo sapiens

text: Escherichia coli

characteristic: organism

text: pure culture


text: College of Life Science and Technology, Huazhong University of Science and Technology

text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

text: medicinal plant

characteristic: cultivar

text: The herbal metagenome of four TCM preparations

characteristic: description

text: microbes

characteristic: ecotype

text: environmental microbes

text: China: Wuhan

text: medicinal plant

text: natural condition

text: 30.6 N 114.3 E

text: plant metagenome


name: Spotted scat sample for G10K-VGP reference genome

characteristic: External Id

characteristic: INSDC center name

text: live

text: Model organism or animal

text: Institue of Molecular and Cell Biology

characteristic: biomaterial provider

text: Byrappa Venkatesh

characteristic: collected by

characteristic: collection date

text: The spotted scat (Scatophagus argus) is a two basic color morph fish (green or red), found from the Indo-Specific region to Australia. They are popular aquarium fish.This sample was collected by Byrappa Venkatesh, supported by Gene Myers, in collaboration with Richard Durbin, and used to generate a high-quality reference genome as part of the G10K-VGP and Fish VGP projects.

text: adult

characteristic: dev stage

text: Singapore

characteristic: isolate

text: 1.3521 N 103.8198 E

characteristic: lat lon

text: Scatophagus argus

text: frozen

text: muscle

characteristic: tissue

text: Animal sample from Scatophagus argus

characteristic: title

text: liquid nitrogen

characteristic: treatment


name: Convict blenny sample for G10K-VGP reference genome

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: SRA accession

text: Institue of Molecular and Cell Biology

text: Byrappa Venkatesh

text: The convict blenny (Pholidichthys leucotaenia) lives in the west-central Pacific, and is a small eel shaped fish. Their colors change throughout life. They resemble blennys and gobies, but this may be convergent as genetic analyses indicates that they are not closely related. This sample was collected by Byrappa Venkatesh, supported by Gene Myers, in collaboration with Richard Durbin, and used to generate a high-quality reference genome as part of the G10K-VGP and Fish VGP projects.

text: adult

text: Singapore

characteristic: geo loc name

text: 1.3521 N 103.8198 E

text: Pholidichthys leucotaenia

text: frozen

text: whole body

text: Animal sample from Pholidichthys leucotaenia

text: liquid nitrogen


name: Boesmans rainbowfish sample for G10K-VGP reference genome

characteristic: External Id

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: Institue of Molecular and Cell Biology

text: Byrappa Venkatesh

text: The Boesmans rainbowfish (Melanotaenia boesemani) is currently an endangered species of fish found in lakes and tributaries, in a moutanous region of the West Papua, Indonesia. They can adjust their colors, and are kept in aquarium. This sample was collected by Byrappa Venkatesh, supported by Gene Myers, in collaboration with Richard Durbin, and used to generate a high-quality reference genome as part of the G10K-VGP and Fish VGP projects.

characteristic: description

text: Singapore

text: 1.3521 N 103.8198 E

text: Melanotaenia boesemani

characteristic: organism

text: frozen

text: muscle

text: Animal sample from Melanotaenia boesemani

text: liquid nitrogen


name: Peladilla sample for G10K-VGP reference genome

text: live

text: Model organism or animal

text: SUBPESCA, R. EX. N 1061, Chile.

characteristic: Permits

text: Universidad Austral de Chile

characteristic: biomaterial provider

text: Barcode haplotype B

text: Cristian Correa Guzman

characteristic: collected by

characteristic: collection date

text: The Peladilla (Aplochiton taeniatus) is a galaxiid fresh water fish found in Argentina and Chile, South America. This sample was collected by Cristian Correa Guzman, supported by Gene Myers, in collaboration with Richard Durbin, and used to generate a high-quality reference genome as part of the G10K-VGP and Fish VGP projects.

text: subadult

characteristic: dev stage

text: Chile: Santo Domingo River, Valdivia, Los Rios district

characteristic: isolate

text: 39.917592 S 73.107197 W

text: Aplochiton taeniatus

characteristic: specimen voucher

text: frozen

text: liver

text: Animal sample from Aplochiton taeniatus

text: liquid nitrogen


name: Needlefish sample for G10K-VGP reference genome

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: University of Konstanz

text: Andreas Kaut

text: The Needlefish (Xenentodon cancila) is a fresh water fish found in South and SouthEast Asia. It is large, but relatively long and thin fish, and thus its name. It is popular in aquarium for over 100 years. This sample was collected by Andreas Kaut, procured by Axel Meyer, sequencing supported by Gene Myers, in collaboration with Richard Durbin, to generate a high-quality reference genome as part of the G10K-VGP and Fish VGP projects.

text: adult

text: Netherlands: Dejong Marinelife, Rotterdam

text: 51.9244201 N 4.4777325 E

characteristic: lat lon

text: Xenentodon cancila

text: male

characteristic: sex

text: frozen

text: liver, muscle

characteristic: tissue

text: Animal sample from Xenentodon cancila

characteristic: title

text: liquid nitrogen

characteristic: treatment


name: Red-bellied piranha sample for G10K-VGP reference genome

characteristic: External Id

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: University of Konstanz

text: Nidal Karagic

text: The Red-bellied piranha (Pygocentrus nattereri) is a freshwater fish found in South America, including the Amazon. They are famous for their ferocious predator eating behavior that they do in groups when there is starvation, but this is not very common. They communicate acoustically using sonic muscles, usually during aggressive behaviors. This sample was collected by Nidal Karagic, procured by Axel Meyer, sequencing supported by Gene Myers, in collaboration with Richard Durbin, to generate a high-quality reference genome as part of the G10K-VGP and Fish VGP projects.

characteristic: description

text: adult

characteristic: geo loc name

text: 51.9244201 N 4.4777325 E

text: Pygocentrus nattereri

text: male

text: frozen

text: liver

text: Animal sample from Pygocentrus nattereri

text: liquid nitrogen


name: Northern pike sample for G10K-VGP reference genome

text: live

text: Model organism or animal

text: University of Konstanz

characteristic: biomaterial provider

text: Martin Reichard

characteristic: collected by

characteristic: collection date

text: The Northern pike (Esox lucius), is found across the Canada and Northern Europe. They inhabit brackish and fresh waters. They get their name from their pole like weapon, and are highly predatory. This sample was collected by Martin Reichard, procured by Axel Meyer, sequencing supported by Gene Myers, in collaboration with Richard Durbin, to generate a high-quality reference genome as part of the G10K-VGP and Fish VGP projects.

text: adult

characteristic: dev stage

text: Czech Republic: Jihlava River, Danube basin

characteristic: isolate

text: 49.218 N 16.717 E

text: Esox lucius

characteristic: organism

text: frozen

text: liver, spleen

text: Animal sample from Esox lucius

text: liquid nitrogen


name: European eel sample for G10K-VGP reference genome

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: University of Konstanz

text: Martin Reichard

text: The European eel (Anguilla anguilla) is a true eel, found around European coast, and are currently critically endangered, down to 2% of their historical population, due to water pollution. They can live up to be over 80 years old in captivity, the oldest recorded animal being 155 years. This sample was collected by Nidal Karagic, procured by Axel Meyer, sequencing supported by Gene Myers, in collaboration with Richard Durbin, to generate a high-quality reference genome as part of the G10K-VGP and Fish VGP projects.

text: adult

text: Czech Republic: Elbe River

text: 50.2909 N 14.4971 E

characteristic: lat lon

text: Anguilla anguilla

text: frozen

text: liver

characteristic: tissue

text: Animal sample from Anguilla anguilla

text: liquid nitrogen