text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Puebla

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


status: PUBLIC

characteristic: External Id

text: Instituto de Biotecnologia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not collected

tag: attribute

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

characteristic: description

text: not collected

text: not collected

text: Mexico: Morelos

text: Homo sapiens

characteristic: host

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

characteristic: isolate

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: Consorcio Mexicano de Vigilancia Genomica (CoViGen-Mex). Julio Elias Alvarado-Yaah, Carlos F. Arias, Santiago Avila-Rios, Victor Hugo Borja-Aburto, Celia Boukadida, Juan Bautista Chale-Dzul , Jose Antonio Enciso-Moreno, Gloria Elena Espinoza-Ayala, Fernando Fontove-Herrera, Concepcion Grajales-Muniz, Ricardo Grande, Alfredo Herrera-Estrella, Carla Ivon Herrera-Najera, Pavel Isa, Brenda Irasema Maldonado-Meza, Bernardo Martinez-Miguel, Margarita Matias-Florentino, Maria Guadalupe de Jesus Mireles-Rivera, Gloria Maria Molina-Salinas, Hector Montoya-Fuentes, Jose Esteban Munoz-Medina, Jose de Jesus Nunez-Contreras, Alicia Ocana-Mondragon, Luis Alberto Ochoa-Carrera, Hector Esteban Paz-Juarez, Francisco Pulido, Helen Haydee Fernanda Ramirez-Plascencia, Angel Gustavo Salas-Lais, Jorge Ivan Salinal-Nevarez, Alejandro Sanchez-Flores, Clara Esperanza Santacruz-Tinoco, Maria Guadalupe Santiago-Mauricio, Nelly Selem-Mojica, Blanca Taboada, Gloria Vazquez

characteristic: title

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Bronchoalveolar lavage

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Veracruz

text: Homo sapiens

text: mucus

text: Bronchoveolar lavage

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: bronchoalveolar lavage

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Mexico City

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Mexico City

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Veracruz

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Jalisco

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Pharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Nuevo Leon

text: Homo sapiens

text: mucus

text: Pharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Pharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Nuevo Leon

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Chihuahua

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Chihuahua

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Baja California

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Oaxaca

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Veracruz

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Morelos

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: unknown

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Morelos

text: Homo sapiens

text: mucus

text: unknown

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: unknown

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: unknown

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Hidalgo

text: Homo sapiens

text: mucus

text: unknown

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: unknown

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: San Luis Potosi

text: hCoV-19/Mexico/SLP-LANGEBIO_IMSS_1326/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tabasco

text: hCoV-19/Mexico/TAB-LANGEBIO_IMSS_1191/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Quintana Roo

text: hCoV-19/Mexico/ROO-LANGEBIO_IMSS_1192/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC-LANGEBIO_IMSS_1199/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC-LANGEBIO_IMSS_1200/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC-LANGEBIO_IMSS_1222/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC-LANGEBIO_IMSS_1223/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC-LANGEBIO_IMSS_1239/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Sinaloa

text: hCoV-19/Mexico/SIN_LANGEBIO_IMSS_1292/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Pharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Nayarit

text: hCoV-19/Mexico/NAY-LANGEBIO_IMSS_1315/2021

text: Homo sapiens

text: mucus

text: Pharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Pharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Puebla

text: hCoV-19/Mexico/PUE-LANGEBIO_IMSS_1388/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Veracruz

text: hCoV-19/Mexico/VER-LANGEBIO_IMSS_1409/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Quintana Roo

text: hCoV-19/Mexico/ROO-LANGEBIO_IMSS_1588/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Quintana Roo

text: hCoV-19/Mexico/ROO-LANGEBIO_IMSS_1593/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Jalisco

text: hCoV-19/Mexico/JAL-LANGEBIO_IMSS_1636/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Nuevo Leon

text: hCoV-19/Mexico/NLE-LANGEBIO_IMSS_1656/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Guerrero

text: hCoV-19/Mexico/GRO-LANGEBIO_IMSS_1774/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: Consorcio Mexicano de Vigilancia Genomica (CoViGen-Mex). Julio Elias Alvarado-Yaah, Carlos F. Arias, Santiago Avila-Rios, Victor Hugo Borja-Aburto, Celia Boukadida, Juan Bautista Chale-Dzul , Jose Antonio Enciso-Moreno, Gloria Elena Espinoza-Ayala, Fernando Fontove-Herrera, Concepcion Grajales-Muniz, Ricardo Grande, Alfredo Herrera-Estrella, Carla Ivon Herrera-Najera, Pavel Isa, Brenda Irasema Maldonado-Meza, Bernardo Martinez-Miguel, Margarita Matias-Florentino, Maria Guadalupe de Jesus Mireles-Rivera, Gloria Maria Molina-Salinas, Hector Montoya-Fuentes, Jose Esteban Munoz-Medina, Jose de Jesus Nunez-Contreras, Alicia Ocana-Mondragon, Luis Alberto Ochoa-Carrera, Hector Esteban Paz-Juarez, Francisco Pulido, Helen Haydee Fernanda Ramirez-Plascencia, Angel Gustavo Salas-Lais, Jorge Ivan Salinal-Nevarez, Alejandro Sanchez-Flores, Clara Esperanza Santacruz-Tinoco, Maria Guadalupe Santiago-Mauricio, Nelly Selem-Mojica, Blanca Taboada, Gloria Vazquez

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Chiapas

text: hCoV-19/Mexico/CHP_LANGEBIO_IMSS_1865/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Jalisco

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Chihuahua

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tamaulipas

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Mexico City

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Quintana Roo

text: hCoV-19/Mexico/ROO_LANGEBIO_IMSS_1957/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC_LANGEBIO_IMSS_1960/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tabasco

text: hCoV-19/Mexico/TAB_LANGEBIO_IMSS_1964/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tabasco

text: hCoV-19/Mexico/TAB_LANGEBIO_IMSS_1976/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Michoacan

text: hCoV-19/Mexico/MIC_LANGEBIO_IMSS_2240/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Nuevo Leon

text: hCoV-19/Mexico/NLE_LANGEBIO_IMSS_1877/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Nuevo Leon

text: hCoV-19/Mexico/NLE_LANGEBIO_IMSS_79581_NC/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tamaulipas

text: hCoV-19/Mexico/TAM_LANGEBIO_IMSS_1949/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Veracruz

text: hCoV-19/Mexico/VER_LANGEBIO_IMSS_2023/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Guerrero

text: hCoV-19/Mexico/GRO_LANGEBIO_IMSS_2035/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Chiapas

text: hCoV-19/Mexico/CHP_LANGEBIO_IMSS_2059/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Chiapas

text: hCoV-19/Mexico/CHP_LANGEBIO_IMSS_2060/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: State of Mexico

text: hCoV-19/Mexico/MEX_LANGEBIO_IMSS_2095/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Baja California Sur

text: hCoV-19/Mexico/BCS_LANGEBIO_IMSS_2119/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Baja California

text: hCoV-19/Mexico/BCN_LANGEBIO_IMSS_2157/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: Consorcio Mexicano de Vigilancia Genomica (CoViGen-Mex). Julio Elias Alvarado-Yaah, Carlos F. Arias, Santiago Avila-Rios, Victor Hugo Borja-Aburto, Celia Boukadida, Juan Bautista Chale-Dzul , Jose Antonio Enciso-Moreno, Gloria Elena Espinoza-Ayala, Fernando Fontove-Herrera, Concepcion Grajales-Muniz, Ricardo Grande, Alfredo Herrera-Estrella, Carla Ivon Herrera-Najera, Pavel Isa, Brenda Irasema Maldonado-Meza, Bernardo Martinez-Miguel, Margarita Matias-Florentino, Maria Guadalupe de Jesus Mireles-Rivera, Gloria Maria Molina-Salinas, Hector Montoya-Fuentes, Jose Esteban Munoz-Medina, Jose de Jesus Nunez-Contreras, Alicia Ocana-Mondragon, Luis Alberto Ochoa-Carrera, Hector Esteban Paz-Juarez, Francisco Pulido, Helen Haydee Fernanda Ramirez-Plascencia, Angel Gustavo Salas-Lais, Jorge Ivan Salinal-Nevarez, Alejandro Sanchez-Flores, Clara Esperanza Santacruz-Tinoco, Maria Guadalupe Santiago-Mauricio, Nelly Selem-Mojica, Blanca Taboada, Gloria Vazquez

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Queretaro

text: hCoV-19/Mexico/QUE_LANGEBIO_IMSS_2166/2021

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Deceased

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Zacatecas

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Colima

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tamaulipas

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Nuevo Leon

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Campeche

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Chihuahua

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: San Luis Potosi

text: hCoV-19/Mexico/SLP_LANGEBIO_IMSS_2650/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Quintana Roo

text: hCoV-19/Mexico/ROO_LANGEBIO_IMSS_2284/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tabasco

text: hCoV-19/Mexico/TAB_LANGEBIO_IMSS_2296/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC_LANGEBIO_IMSS_2308/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Campeche

text: hCoV-19/Mexico/CAM_LANGEBIO_IMSS_2320/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Colima

text: hCoV-19/Mexico/COL_LANGEBIO_IMSS_2540/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Jalisco

text: hCoV-19/Mexico/JAL_LANGEBIO_IMSS_2552/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tamaulipas

text: hCoV-19/Mexico/TAM_LANGEBIO_IMSS_2218/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Queretaro

text: hCoV-19/Mexico/QUE_LANGEBIO_IMSS_2484/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Sonora

text: Homo sapiens

text: mucus

text: Nasopharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: nasopharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: San Luis Potosi

text: hCoV-19/Mexico/SLP_LANGEBIO_IMSS_3106/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tabasco

text: hCoV-19/Mexico/TAB_LANGEBIO_IMSS_2755/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tabasco

text: hCoV-19/Mexico/TAB_LANGEBIO_IMSS_2756/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Tabasco

text: hCoV-19/Mexico/TAB_LANGEBIO_IMSS_2757/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC_LANGEBIO_IMSS_2758/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC_LANGEBIO_IMSS_2759/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: Consorcio Mexicano de Vigilancia Genomica (CoViGen-Mex). Julio Elias Alvarado-Yaah, Carlos F. Arias, Santiago Avila-Rios, Victor Hugo Borja-Aburto, Celia Boukadida, Juan Bautista Chale-Dzul , Jose Antonio Enciso-Moreno, Gloria Elena Espinoza-Ayala, Fernando Fontove-Herrera, Concepcion Grajales-Muniz, Ricardo Grande, Alfredo Herrera-Estrella, Carla Ivon Herrera-Najera, Pavel Isa, Brenda Irasema Maldonado-Meza, Bernardo Martinez-Miguel, Margarita Matias-Florentino, Maria Guadalupe de Jesus Mireles-Rivera, Gloria Maria Molina-Salinas, Hector Montoya-Fuentes, Jose Esteban Munoz-Medina, Jose de Jesus Nunez-Contreras, Alicia Ocana-Mondragon, Luis Alberto Ochoa-Carrera, Hector Esteban Paz-Juarez, Francisco Pulido, Helen Haydee Fernanda Ramirez-Plascencia, Angel Gustavo Salas-Lais, Jorge Ivan Salinal-Nevarez, Alejandro Sanchez-Flores, Clara Esperanza Santacruz-Tinoco, Maria Guadalupe Santiago-Mauricio, Nelly Selem-Mojica, Blanca Taboada, Gloria Vazquez

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC_LANGEBIO_IMSS_2760/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC_LANGEBIO_IMSS_2769/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Campeche

text: hCoV-19/Mexico/CAM_LANGEBIO_IMSS_2772/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Quintana Roo

text: hCoV-19/Mexico/ROO_LANGEBIO_IMSS_2784/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC_LANGEBIO_IMSS_2796/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Quintana Roo

text: hCoV-19/Mexico/ROO_LANGEBIO_IMSS_2808/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Yucatan

text: hCoV-19/Mexico/YUC_LANGEBIO_IMSS_2813/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Sinaloa

text: hCoV-19/Mexico/SIN_LANGEBIO_IMSS_3031/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Sinaloa

text: hCoV-19/Mexico/SIN_LANGEBIO_IMSS_3039/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Nayarit

text: hCoV-19/Mexico/NAY_LANGEBIO_IMSS_3074/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Guanajuato

text: hCoV-19/Mexico/GUA_LANGEBIO_IMSS_3085/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Guanajuato

text: hCoV-19/Mexico/GUA_LANGEBIO_IMSS_3086/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Durango

text: hCoV-19/Mexico/DUR_LANGEBIO_IMSS_2675/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Coahuila

text: hCoV-19/Mexico/COA_LANGEBIO_IMSS_2687/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Chiapas

text: hCoV-19/Mexico/CHP_LANGEBIO_IMSS_2820/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: State of Mexico

text: hCoV-19/Mexico/MEX_LANGEBIO_IMSS_2835/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: male

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: Consorcio Mexicano de Vigilancia Genomica (CoViGen-Mex). Julio Elias Alvarado-Yaah, Carlos F. Arias, Santiago Avila-Rios, Victor Hugo Borja-Aburto, Celia Boukadida, Juan Bautista Chale-Dzul , Jose Antonio Enciso-Moreno, Gloria Elena Espinoza-Ayala, Fernando Fontove-Herrera, Concepcion Grajales-Muniz, Ricardo Grande, Alfredo Herrera-Estrella, Carla Ivon Herrera-Najera, Pavel Isa, Brenda Irasema Maldonado-Meza, Bernardo Martinez-Miguel, Margarita Matias-Florentino, Maria Guadalupe de Jesus Mireles-Rivera, Gloria Maria Molina-Salinas, Hector Montoya-Fuentes, Jose Esteban Munoz-Medina, Jose de Jesus Nunez-Contreras, Alicia Ocana-Mondragon, Luis Alberto Ochoa-Carrera, Hector Esteban Paz-Juarez, Francisco Pulido, Helen Haydee Fernanda Ramirez-Plascencia, Angel Gustavo Salas-Lais, Jorge Ivan Salinal-Nevarez, Alejandro Sanchez-Flores, Clara Esperanza Santacruz-Tinoco, Maria Guadalupe Santiago-Mauricio, Nelly Selem-Mojica, Blanca Taboada, Gloria Vazquez

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: State of Mexico

text: hCoV-19/Mexico/MEX_LANGEBIO_IMSS_2836/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Hospitalized

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected


text: Instituto de Biotecnologia

text: live

text: SARS-CoV-2: clinical or host-associated

text: not collected

text: Instituto Mexicano del Seguro Social

text: not collected

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not collected

text: not collected

text: Sample collected in public hospitals

text: not collected

text: not collected

text: Mexico: Baja California Sur

text: hCoV-19/Mexico/BCS_LANGEBIO_IMSS_2841/2021

text: Homo sapiens

text: mucus

text: Nasopharynge and oropharynge

text: mucus

text: not collected

text: Ambulatory

text: not collected

text: not collected

text: female

text: not applicable

text: Swab

text: Nasopharyngeal and oropharyngeal swab

text: not collected

text: not applicable

text: not applicable

text: not collected

text: not collected

text: not collected

text: Genomic surveillance

text: variant determination

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected

text: not collected