text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Pan Y day 120 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


B-end

status: PUBLIC

characteristic: External Id

text: Arizona State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

text: BM1 ENA Pan B day 120

characteristic: description

text: USA: Biodesign Institute, Tempe, Arizona

text: Bacteria/Archaea

characteristic: host

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

characteristic: organism

text: BM1 soil, light weathered crude oil

text: Metagenome or environmental sample from soil metagenome

characteristic: title


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 as received run 1

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Biostim Pan 1 t 0

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Biostim Pan 2 t 0

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Biostim Pan 3 t 0

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Pan X t 0 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Pan Y t 0 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 as received run 2

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


D-end

text: Arizona State University

text: live

text: Metagenome or environmental

text: BM2 Pan D ENA day 120

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM2 soil, heavy weathered crude oil


E-end

text: Arizona State University

text: live

text: Metagenome or environmental

text: BM2 Pan E ENA t 0

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM2 soil, heavy weathered crude oil


E-fin

text: Arizona State University

text: live

text: Metagenome or environmental

text: BM2 Pan E ENA day 120

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM2 soil, heavy weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM2 Pan 4 biostim day 120

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM2 soil, heavy weathered crude oil


M..Duri

text: Arizona State University

text: live

text: Metagenome or environmental

text: Hydrocarbon-degrading culture grown on Minas crude oil

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: Enrichment on light crude oil


Minas

text: Arizona State University

text: live

text: Metagenome or environmental

text: Hydrocarbon-degrading culture grown on Duri crude oil

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: Enrichment on heavy crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Pan NT top day 120

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM2 Pan U day 50 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM2 soil, heavy weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM2 Pan U day 120 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM2 soil, heavy weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM2 Pan V day 50 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM2 soil, heavy weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM2 Pan V day 120 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM2 soil, heavy weathered crude oil


W-end

text: Arizona State University

text: live

text: Metagenome or environmental

text: BM2 Pan W day 120 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM2 soil, heavy weathered crude oil


Y-mid

text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Pan Z, day 13 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Pan Y, day 8 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


Z-fin

text: Arizona State University

text: live

text: Metagenome or environmental

text: BM1 Pan Z day 120 (+ ozone)

text: Bacteria/Archaea

text: Chromosomal DNA

text: 33.419 N 111.928 W

text: soil metagenome

text: BM1 soil, light weathered crude oil


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

characteristic: serovar

characteristic: strain

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: Wisconsin State Laboratory of Hygiene

text: live

text: Pasteur ST2

characteristic: MLST#

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: blood

text: Acinetobacter baumannii

text: Whole Organism

text: Microbe sample from Acinetobacter baumannii


characteristic: External Id

text: Wisconsin State Laboratory of Hygiene

text: live

text: Pasteur ST650;Achtman ST361

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: other

text: Escherichia coli

text: Whole Organism

text: Microbe sample from Escherichia coli


text: Wisconsin State Laboratory of Hygiene

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: tracheal aspirate

text: Serratia marcescens

text: Whole Organism

text: Microbe sample from Serratia marcescens


text: Wisconsin State Laboratory of Hygiene

characteristic: INSDC first public

text: live

text: Pasteur ST2

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: nares perirectal

text: Acinetobacter baumannii

text: Whole Organism


text: UCLA

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: UCLA Health

text: USA: California,Los Angeles

text: Homo sapiens

text: infection

text: Referral Culture

text: 34.05465048 N 118.46330143 W

text: Bacillus cereus

text: DLOU-Tangshan

text: Pathogen: clinical or host-associated sample from Bacillus cereus


characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella flexneri

text: missing

text: Shigella flexneri


text: live

characteristic: INSDC status

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella sonnei

text: missing

text: Shigella sonnei


text: German Federal Institute for Risk Assessment

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Germany

text: turkey

text: Bordetella avium

text: tissue

text: Microbe sample from Bordetella avium


text: The Rockefeller University

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: 10-12 weeks

characteristic: age

text: Single-cell gene expression library was generated following the manufacturer's protocol for a Chromium Next GEM Single Cell 5' Reagent Kit v2 with Feature Barcode technology for Cell Surface Protein

text: USA: New York

text: Mus musculus

characteristic: replicate

text: female

characteristic: sex

text: sorted epithelial cells

characteristic: tissue


text: The Rockefeller University

text: live

text: Model organism or animal

characteristic: SRA accession

text: 10-12 weeks

characteristic: description

text: USA: New York

text: Mus musculus

characteristic: organism

text: female

text: sorted epithelial cells hashtags

characteristic: title


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

characteristic: serovar

characteristic: strain

text: Escherichia coli


RAK

characteristic: External Id

text: A.V. Zhirmunsky National Scientific Center of Marine Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Invertebrate

text: Russia: Primorsky Krai, Kievka River basin, Gerasimov Creek

text: not applicable

text: RAK

text: Cambaroides wladiwostokiensis

text: chela muscle tissue

text: Invertebrate sample from Cambaroides wladiwostokiensis


text: Santa Clara County Public Health Laboratory

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: USA: Santa Clara County, CA

text: Homo sapiens

text: Rectal

text: Escherichia coli

text: whole organism

text: Microbe sample from Escherichia coli


text: live

text: Microbe, viral or environmental

text: USA: Santa Clara County, CA

text: Homo sapiens

text: urine

text: Escherichia coli

text: whole organism

text: Microbe sample from Escherichia coli


text: fastq

characteristic: Filetype

text: Oregon State University

text: live

text: Plant

text: missing

characteristic: age

text: missing

text: Radiata pine breeding population

characteristic: cultivar

text: mature

text: not applicable

characteristic: ecotype

text: RapidGenomics_F203_SCI_119401_P001_WA01_RapidGenomics_F203_SCI_119401_P001_WA01_i5-46_i7-59_S385_L003_R1_001.fastq.gz

characteristic: filename

text: RapidGenomics_F203_SCI_119401_P001_WA01_RapidGenomics_F203_SCI_119401_P001_WA01_i5-46_i7-59_S385_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

characteristic: tissue

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

text: live

text: Plant

characteristic: SRA accession

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WA02_RapidGenomics_F203_SCI_119401_P001_WA02_i5-46_i7-27_S386_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WA02_RapidGenomics_F203_SCI_119401_P001_WA02_i5-46_i7-27_S386_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

characteristic: isolate

text: Pinus radiata

characteristic: organism

text: leaves

text: Plant sample from Pinus radiata

characteristic: title


characteristic: External Id

text: fastq

text: Oregon State University

characteristic: INSDC center name

text: live

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WA03_RapidGenomics_F203_SCI_119401_P001_WA03_i5-46_i7-82_S387_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WA03_RapidGenomics_F203_SCI_119401_P001_WA03_i5-46_i7-82_S387_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WA05_RapidGenomics_F203_SCI_119401_P001_WA05_i5-46_i7-38_S389_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WA05_RapidGenomics_F203_SCI_119401_P001_WA05_i5-46_i7-38_S389_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WA06_RapidGenomics_F203_SCI_119401_P001_WA06_i5-46_i7-74_S390_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WA06_RapidGenomics_F203_SCI_119401_P001_WA06_i5-46_i7-74_S390_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

text: live

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WA10_RapidGenomics_F203_SCI_119401_P001_WA10_i5-46_i7-54_S394_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WA10_RapidGenomics_F203_SCI_119401_P001_WA10_i5-46_i7-54_S394_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

characteristic: Filetype

text: Oregon State University

text: live

text: Plant

text: missing

characteristic: age

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WB02_RapidGenomics_F203_SCI_119401_P001_WB02_i5-46_i7-39_S398_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WB02_RapidGenomics_F203_SCI_119401_P001_WB02_i5-46_i7-39_S398_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

text: live

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

characteristic: cultivar

text: mature

text: not applicable

characteristic: ecotype

text: RapidGenomics_F203_SCI_119401_P001_WB03_RapidGenomics_F203_SCI_119401_P001_WB03_i5-46_i7-2_S399_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WB03_RapidGenomics_F203_SCI_119401_P001_WB03_i5-46_i7-2_S399_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

text: live

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WB04_RapidGenomics_F203_SCI_119401_P001_WB04_i5-46_i7-20_S400_L003_R1_001.fastq.gz

characteristic: filename

text: RapidGenomics_F203_SCI_119401_P001_WB04_RapidGenomics_F203_SCI_119401_P001_WB04_i5-46_i7-20_S400_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

characteristic: tissue

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

text: live

text: Plant

characteristic: SRA accession

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WB06_RapidGenomics_F203_SCI_119401_P001_WB06_i5-46_i7-6_S402_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WB06_RapidGenomics_F203_SCI_119401_P001_WB06_i5-46_i7-6_S402_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

characteristic: isolate

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

text: live

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WB08_RapidGenomics_F203_SCI_119401_P001_WB08_i5-46_i7-57_S404_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WB08_RapidGenomics_F203_SCI_119401_P001_WB08_i5-46_i7-57_S404_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

characteristic: organism

text: leaves

text: Plant sample from Pinus radiata

characteristic: title


characteristic: External Id

text: fastq

text: Oregon State University

characteristic: INSDC center name

text: live

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WB11_RapidGenomics_F203_SCI_119401_P001_WB11_i5-46_i7-5_S407_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WB11_RapidGenomics_F203_SCI_119401_P001_WB11_i5-46_i7-5_S407_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WC02_RapidGenomics_F203_SCI_119401_P001_WC02_i5-46_i7-67_S410_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WC02_RapidGenomics_F203_SCI_119401_P001_WC02_i5-46_i7-67_S410_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WC03_RapidGenomics_F203_SCI_119401_P001_WC03_i5-46_i7-40_S411_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WC03_RapidGenomics_F203_SCI_119401_P001_WC03_i5-46_i7-40_S411_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

text: live

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WC04_RapidGenomics_F203_SCI_119401_P001_WC04_i5-46_i7-19_S412_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WC04_RapidGenomics_F203_SCI_119401_P001_WC04_i5-46_i7-19_S412_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

characteristic: Filetype

text: Oregon State University

text: live

text: Plant

text: missing

characteristic: age

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WC06_RapidGenomics_F203_SCI_119401_P001_WC06_i5-46_i7-3_S414_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WC06_RapidGenomics_F203_SCI_119401_P001_WC06_i5-46_i7-3_S414_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

text: live

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

characteristic: cultivar

text: mature

text: not applicable

characteristic: ecotype

text: RapidGenomics_F203_SCI_119401_P001_WC08_RapidGenomics_F203_SCI_119401_P001_WC08_i5-46_i7-17_S416_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WC08_RapidGenomics_F203_SCI_119401_P001_WC08_i5-46_i7-17_S416_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: fastq

text: Oregon State University

text: live

text: Plant

text: missing

text: missing

text: Radiata pine breeding population

text: mature

text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WC09_RapidGenomics_F203_SCI_119401_P001_WC09_i5-46_i7-93_S417_L003_R1_001.fastq.gz

characteristic: filename

text: RapidGenomics_F203_SCI_119401_P001_WC09_RapidGenomics_F203_SCI_119401_P001_WC09_i5-46_i7-93_S417_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

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text: RapidGenomics_F203_SCI_119401_P001_WD02_RapidGenomics_F203_SCI_119401_P001_WD02_i5-46_i7-72_S422_L003_R2_001.fastq.gz

text: New Zealand

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text: not applicable

text: RapidGenomics_F203_SCI_119401_P001_WH06_RapidGenomics_F203_SCI_119401_P001_WH06_i5-46_i7-49_S474_L003_R1_001.fastq.gz

text: RapidGenomics_F203_SCI_119401_P001_WH06_RapidGenomics_F203_SCI_119401_P001_WH06_i5-46_i7-49_S474_L003_R2_001.fastq.gz

text: New Zealand

text: not applicable

text: Pinus radiata

text: leaves

text: Plant sample from Pinus radiata


text: University of Birmingham

text: live

text: Metagenome or environmental

text: India: Dera Bassi

text: water

text: 30.619616 N 76.851997 E

text: metagenome

text: Metagenome or environmental sample from metagenome


text: University of Birmingham

text: live

text: Metagenome or environmental

text: India: Dera Bassi

text: sediment

text: 30.619616 N 76.851997 E

text: metagenome


text: University of Birmingham

text: live

text: Metagenome or environmental

text: India: Dera Bassi

text: water

text: 30.601500 N 76.815465 E

text: metagenome


text: University of Birmingham

text: live

text: Metagenome or environmental

text: India: Dera Bassi

text: sediment

text: 30.601500 N 76.815465 E

text: metagenome


text: University of Birmingham

text: live

text: Metagenome or environmental

text: India: Dera Bassi

text: water

text: 30.604056 N 76.803972 E

text: metagenome


text: University of Birmingham

text: live

text: Metagenome or environmental

text: India: Dera Bassi

text: sediment

text: 30.604056 N 76.803972 E

text: metagenome


text: University of Birmingham

text: live

text: Metagenome or environmental

text: India: Bhiwadi

text: water

text: 28.190000 N 76.850000 E

text: metagenome


text: University of Birmingham

text: live

text: Metagenome or environmental

text: India: Bhiwadi

text: water

text: 28.200000 N 76.840000 E

text: metagenome


text: University of Birmingham

text: live

text: Metagenome or environmental

text: India: Bhiwadi

text: water

text: 28.120000 N 76.790000 E

text: metagenome


text: Channing Division of Network Medicine, Mass General Brigham

text: live

text: Generic

text: female

characteristic: Sex

characteristic: batch

characteristic: bdrbase

text: missing

text: missing

characteristic: inhaled steroids

text: Homo sapiens

characteristic: pctpred fev1_pre_bd

text: serum

text: serum


text: live

text: Generic

characteristic: SRA accession

text: male

text: missing

text: missing

text: Homo sapiens

characteristic: organism

text: serum

text: serum

characteristic: tissue


characteristic: External Id

text: PATHOLOGY AND CELL BIOLOGY, COLUMBIA UNIVERSITY

characteristic: INSDC center name

text: live

text: Generic

text: various cell lines

characteristic: cell line

text: missing

text: missing

text: Homo sapiens

text: various cell lines

text: Various treated and untreated cells

characteristic: title


High density 8 arm pluteus week 1 rep 1

text: UCI

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

text: 21 days

text: week 1 of 8-arm-pluteus developmental stage, in beakers observed to have higher larval densities than others

characteristic: description

text: intertidal

characteristic: ecotype

text: USA: California

text: marine plankton Strongylocentrotus purpuratus

characteristic: isolation source

text: marine metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


High density 8 arm pluteus week 1 rep 2

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: age

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


High density 8 arm pluteus week 1 rep 3

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

text: intertidal

text: USA: California

text: marine metagenome

characteristic: organism

text: not collected

text: whole organism

characteristic: tissue


High density 8 arm pluteus week 1 rep 4

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


4 arm Pluteus rep 1

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: 4-arm-pluteus developmental stage

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism

characteristic: title


4 arm Pluteus rep 2

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: 4-arm-pluteus developmental stage

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


4 arm Pluteus rep 3

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

text: 4-arm-pluteus developmental stage

characteristic: description

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


4 arm Pluteus rep 4

text: UCI

text: live

text: Model organism or animal

text: 4-arm-pluteus developmental stage

text: intertidal

characteristic: ecotype

text: USA: California

characteristic: isolation source

text: marine metagenome

text: not collected

text: whole organism


High density 8 arm pluteus week 2 rep 1

text: UCI

text: live

text: Model organism or animal

text: week 2 of 8-arm-pluteus developmental stage, in beakers observed to have higher larval densities than others

text: intertidal

text: USA: California

text: marine metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


High density 8 arm pluteus week 2 rep 2

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


High density 8 arm pluteus week 2 rep 3

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


High density 8 arm pluteus week 2 rep 4

text: UCI

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

characteristic: organism

text: not collected

text: whole organism

characteristic: tissue


High density 8 arm pluteus week 3 rep 1

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: week 3 of 8-arm-pluteus developmental stage, in beakers observed to have higher larval densities than others

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


High density 8 arm pluteus week 3 rep 2

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism

characteristic: title


High density 8 arm pluteus week 3 rep 3

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


High density 8 arm pluteus week 3 rep 4

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: description

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


6 arm Pluteus rep 1

text: UCI

text: live

text: Model organism or animal

text: 6-arm-pluteus developmental stage

text: intertidal

characteristic: ecotype

text: USA: California

characteristic: isolation source

text: marine metagenome

text: not collected

text: whole organism


6 Arm Pluteus rep 2

text: UCI

text: live

text: Model organism or animal

text: 6-arm-pluteus developmental stage

text: intertidal

text: USA: California

text: marine metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


6 Arm Pluteus rep 3

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 6-arm-pluteus developmental stage

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


6 Arm Pluteus rep 4

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: 6-arm-pluteus developmental stage

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


8 arm Pluteus rep 1

text: UCI

text: live

text: Model organism or animal

text: week 1 of 8-arm-pluteus developmental stage

text: intertidal

text: USA: California

text: marine metagenome

characteristic: organism

text: not collected

text: whole organism

characteristic: tissue


8 Arm Pluteus rep 2

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


8 Arm Pluteus rep 3

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism

characteristic: title


8 Arm Pluteus rep 4

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


8 arm Pluteus week 2 rep 1

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

text: week 2 of 8-arm-pluteus developmental stage

characteristic: description

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


8 Arm Pluteus week 2 rep 2

text: UCI

text: live

text: Model organism or animal

text: intertidal

characteristic: ecotype

text: USA: California

characteristic: isolation source

text: marine metagenome

text: not collected

text: whole organism


8 Arm Pluteus week 2 rep 3

text: UCI

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


8 Arm Pluteus week 2 rep 4

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


8 arm Pluteus week 3 rep 1

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: week 3 of 8-arm-pluteus developmental stage

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


8 Arm Pluteus week 3 rep 2

text: UCI

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

characteristic: organism

text: not collected

text: whole organism

characteristic: tissue


8 Arm Pluteus week 3 rep 3

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


8 Arm Pluteus week 3 rep 4

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism

characteristic: title


Eggs rep 1

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Eggs collected dry from aboral surface of adult urchin

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Eggs rep 2

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: description

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Eggs rep 3

text: UCI

text: live

text: Model organism or animal

text: intertidal

characteristic: ecotype

text: USA: California

characteristic: isolation source

text: marine metagenome

text: not collected

text: whole organism


Embryos rep 1

text: UCI

text: live

text: Model organism or animal

text: Embryos

text: intertidal

text: USA: California

text: marine metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


Embryos rep 2

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Embryos

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Embryos rep 3

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: Embryos

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Filtered Sea Water sample 1 rep 1

text: UCI

text: live

text: Model organism or animal

text: FilteredSeaWater sampled at beginning of 5 week experiment

text: not applicable

text: intertidal

text: USA: California

text: seawater

text: seawater metagenome

characteristic: organism

text: not collected

text: whole organism

characteristic: tissue


Filtered sea water sample 1 rep 2

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: seawater

text: seawater metagenome

text: not collected

text: whole organism


Filtered sea water sample 1 rep 3

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: seawater

text: seawater metagenome

text: not collected

text: whole organism

characteristic: title


Filtered sea water sample 2 rep 1

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: FilteredSeaWater sampled during the middle of 5 week experiment

text: not applicable

text: intertidal

text: USA: California

text: seawater

text: seawater metagenome

text: not collected

text: whole organism


Filtered sea water sample 2 rep 2

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: description

text: not applicable

text: intertidal

text: USA: California

text: seawater

text: seawater metagenome

text: not collected

text: whole organism


Filtered sea water sample 2 rep 3

text: UCI

text: live

text: Model organism or animal

text: not applicable

text: intertidal

characteristic: ecotype

text: USA: California

text: seawater

characteristic: isolation source

text: seawater metagenome

text: not collected

text: whole organism


Filtered sea water sample 3 rep 1

text: UCI

text: live

text: Model organism or animal

text: FilteredSeaWater sampled at end of 5 week experiment

text: not applicable

text: intertidal

text: USA: California

text: seawater

text: seawater metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


Filtered sea water sample 3 rep 2

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not applicable

text: intertidal

text: USA: California

text: seawater

text: seawater metagenome

text: not collected

text: whole organism


Filtered sea water sample 3 rep 3

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: not applicable

text: intertidal

text: USA: California

text: seawater

text: seawater metagenome

text: not collected

text: whole organism


Gastrulae rep 1

text: UCI

text: live

text: Model organism or animal

text: Gastrulae (gastrulae free-swimming in water column 24 hours post-fertilization)

text: intertidal

text: USA: California

text: marine metagenome

characteristic: organism

text: not collected

text: whole organism

characteristic: tissue


Gastrulae rep 2

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Gastrulae rep 3

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism

characteristic: title


Incompetent Gastrulae rep 1

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: IncompetentGastrulae (gastrulae not free-swimming in water column 24 hours post-fertilization)

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Incompetent Gastrulae rep 2

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: description

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Incompetent Gastrulae rep 3

text: UCI

text: live

text: Model organism or animal

text: intertidal

characteristic: ecotype

text: USA: California

characteristic: isolation source

text: marine metagenome

text: not collected

text: whole organism


Isochrysis week 1 rep 1

text: UCI

text: live

text: Model organism or animal

text: Isochrysis galbana sampled during first week of feeding larval development

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


Isochrysis week 1 rep 2

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

text: not collected

text: whole organism


Isochrysis week 1 rep 3

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

text: not collected

text: whole organism


Isochrysis week 2 rep 1

text: UCI

text: live

text: Model organism or animal

text: Isochrysis galbana sampled during second week of feeding larval development

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

characteristic: organism

text: not collected

text: whole organism

characteristic: tissue


Isochrysis week 2 rep 2

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

text: not collected

text: whole organism


Isochrysis week 2 rep 3

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

text: not collected

text: whole organism

characteristic: title


Isochrysis week 3 rep 1

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Isochrysis galbana sampled during third week of feeding larval development

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

text: not collected

text: whole organism


Isochrysis week 3 rep 2

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: description

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

text: not collected

text: whole organism


Isochrysis week 3 rep 3

text: UCI

text: live

text: Model organism or animal

text: not applicable

text: intertidal

characteristic: ecotype

text: USA: California

text: algae Isochrysis galbana

characteristic: isolation source

text: marine metagenome

text: not collected

text: whole organism


Isochrysis week 4 rep 1

text: UCI

text: live

text: Model organism or animal

text: Isochrysis galbana sampled during fourth week of feeding larval development

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


Isochrysis week 4 rep 2

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

text: not collected

text: whole organism


Isochrysis week 4 rep 3

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: not applicable

text: intertidal

text: USA: California

text: algae Isochrysis galbana

text: marine metagenome

text: not collected

text: whole organism


text: UCI

text: live

text: Model organism or animal

text: not applicable

text: not applicable

text: Control (mock community as positive control during library construction and sequencing)

text: not applicable

text: not applicable

text: USA: California

text: synthetic

text: synthetic metagenome

characteristic: organism

text: not applicable

text: not applicable

characteristic: tissue

text: mock community control


Prism Pluteus rep 1

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: Prism-Pluteus developmental stage

text: intertidal

text: USA: California

text: marine plankton Strongylocentrotus purpuratus

text: marine metagenome

text: not collected

text: whole organism


Prism Pluteus rep 2

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: Prism-Pluteus developmental stage

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism

characteristic: title


Prism Pluteus rep 3

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Prism-Pluteus developmental stage

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Prism Pluteus rep 4

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

text: Prism-Pluteus developmental stage

characteristic: description

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 1 rep 1

text: UCI

text: live

text: Model organism or animal

text: Rhodomonas lens sampled during first week of feeding larval development

text: not applicable

text: intertidal

characteristic: ecotype

text: USA: California

text: algae Rhodomonas lens

characteristic: isolation source

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 1 rep 2

text: UCI

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


Rhodomonas week 1 rep 3

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 2 rep 1

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: Rhodomonas lens sampled during second week of feeding larval development

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 2 rep 2

text: UCI

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

characteristic: organism

text: not collected

text: whole organism

characteristic: tissue


Rhodomonas week 2 rep 3

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 3 rep 1

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: Rhodomonas lens sampled during third week of feeding larval development

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

text: not collected

text: whole organism

characteristic: title


Rhodomonas week 3 rep 2

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 3 rep 3

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: description

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 4 rep 1

text: UCI

text: live

text: Model organism or animal

text: Rhodomonas lens sampled during fourth week of feeding larval development

text: not applicable

text: intertidal

characteristic: ecotype

text: USA: California

text: algae Rhodomonas lens

characteristic: isolation source

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 4 rep 2

text: UCI

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

characteristic: replicate

text: not collected

characteristic: sex

text: whole organism


Rhodomonas week 4 rep 3

text: UCI

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 5 rep 1

text: UCI

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: Rhodomonas lens sampled during fifth week of feeding larval development

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

text: not collected

text: whole organism


Rhodomonas week 5 rep 2

text: UCI

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

characteristic: organism

text: not collected

text: whole organism

characteristic: tissue


Rhodomonas week 5 rep 3

characteristic: External Id

text: UCI

characteristic: INSDC center name

text: live

text: Model organism or animal

text: not applicable

text: intertidal

text: USA: California

text: algae Rhodomonas lens

text: marine metagenome

text: not collected

text: whole organism


Sperm rep 1

text: UCI

characteristic: INSDC first public

text: live

text: Model organism or animal

text: Sperm collected dry from aboral surface of adult urchin

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism

characteristic: title


Sperm rep 2

text: UCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


Sperm rep 3

text: UCI

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: description

text: intertidal

text: USA: California

text: marine metagenome

text: not collected

text: whole organism


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

characteristic: host

text: not applicable

characteristic: isolate

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria1

text: gut bacteria

characteristic: strain


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria2

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria3

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria4

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria5

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria6

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria7

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria8

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria9

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria10

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria11

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria12

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria13

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria14

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria15

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: gut metagenome

text: gut bacteria16

text: gut bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: soil metagenome

text: gut bacteria1

text: soil bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: soil metagenome

text: gut bacteria2

text: soil bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: soil metagenome

text: gut bacteria3

text: soil bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: soil metagenome

text: gut bacteria4

text: soil bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: soil metagenome

text: gut bacteria5

text: soil bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: soil metagenome

text: gut bacteria6

text: soil bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: soil metagenome

text: gut bacteria7

text: soil bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: soil metagenome

text: gut bacteria8

text: soil bacteria


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: China:Xuanzhou District Anhui Province

text: not applicable

text: not applicable

text: not applicable

text: missing

text: soil metagenome

text: gut bacteria9

text: soil bacteria


Intestinibacillus sp. NTUH-41-i26

text: stool sample

characteristic: Host

text: National Taiwan University Hospital

text: live

text: Microbe, viral or environmental

characteristic: Tax ID

text: A key microbe involved in the conversion of gamma-butyrobetaine to trimethylamine in the human gut.

text: Taiwan

text: Intestinibacillus sp. NTUH-41-i26

text: Bacteria

text: Intestinibacillus sp. NTUH-41-i26


Emergencia timonensis NTUH-41-K21

text: National Taiwan University Hospital

text: live

text: Microbe, viral or environmental

text: Taiwan

text: stool sample

text: missing

text: Emergencia timonensis

characteristic: organism

text: Bacteria

text: Emergencia timonensis NTUH-41-K21


d3 K 1

characteristic: External Id

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

characteristic: age

characteristic: breed

text: China: Beijing

text: Mus musculus

text: biological replicate 1

characteristic: replicate

text: male

characteristic: sex

text: lung

characteristic: tissue

text: Model organism or animal sample from Mus musculus


d3 K 2

text: China-Japan Friendship Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 2

text: male

text: lung

characteristic: title


d3 K 3

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 3

text: male

text: lung


d3 B 1

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

characteristic: SRA accession

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 1

text: male

text: lung


d3 B 2

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 2

text: male

text: lung


d3 B 3

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 3

text: male

text: lung


d3 R 1

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 1

text: male

text: lung


d3 R 2

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 2

text: male

text: lung


d3 R 3

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 3

text: male

text: lung


d3 R 4

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 4

text: male

text: lung


d3 O 1

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 1

text: male

text: lung


d3 O 2

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 2

text: male

text: lung


d3 O 3

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 3

text: male

text: lung


d3 O 4

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 4

text: male

text: lung


d7 K 1

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 1

text: male

text: lung


d7 K 2

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 2

text: male

text: lung


d7 K 3

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 3

text: male

text: lung


d7 B 1

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 1

text: male

text: lung


d7 B 2

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 2

text: male

text: lung


d7 B 3

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 3

text: male

text: lung


d7 R 1

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 1

text: male

text: lung


d7 R 2

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 2

text: male

text: lung


d7 R 3

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 3

text: male

text: lung


d7 R 4

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 4

text: male

text: lung


d7 O 1

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 1

text: male

text: lung


d7 O 2

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 2

text: male

text: lung


d7 O 3

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 3

text: male

text: lung


d7 O 4

text: China-Japan Friendship Hospital

text: live

text: Model organism or animal

text: 6 weeks

text: China: Beijing

text: Mus musculus

text: biological replicate 4

text: male

text: lung


name: arabidopsis immune response of single cell

text: School of Life Sciences

text: live

text: Plant

text: 6 days

characteristic: ecotype

text: China

text: Arabidopsis thaliana

text: cotyledon

text: Arabidopsis thaliana immune response of single cell


ring 3C H2A.Z rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: Parasite cultures were crosslinked with paraformaldehyde and then ChIP-seq was conducted.

characteristic: filename

text: fastq

characteristic: filetype

text: Australia: Melbourne

text: Homo sapiens

characteristic: host

text: Illumina NovaSeq 6000

characteristic: isolate

text: laboratory

text: ring 3C H2A.Z rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

characteristic: organism

text: ILLUMINA

characteristic: platform

text: cell culture

text: ChIP-Seq of H2A.Z from ring stage Plasmodium falciparum 3C subclone

text: Microbe sample from Plasmodium falciparum 3D7


ring 3C H2A.Z rep2

characteristic: External Id

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring 3C H2A.Z rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


ring 3C H2A.Zac rep1

text: The University of Melbourne

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring 3C H2A.Zac rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2A.Zac from ring stage Plasmodium falciparum 3C subclone


ring 3C H2A.Zac rep2

text: The University of Melbourne

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring 3C H2A.Zac rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


schizont 3C H2A.Z rep1

text: The University of Melbourne

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C H2A.Z rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2A.Z from schizont stage Plasmodium falciparum 3C subclone


schizont 3C H2A.Z rep2

text: The University of Melbourne

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C H2A.Z rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


schizont 3C H2A.Zac rep1

text: The University of Melbourne

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C H2A.Zac rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2A.Zac from schizont stage Plasmodium falciparum 3C subclone


schizont 3C H2A.Zac rep2

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C H2A.Zac rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

characteristic: title


ring 3C H2B.Z rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Michael Duffy

text: 3C1_RL5-H2BZ-pair_S42_L002_R1_001.fastq.gz

text: 3C1_RL5-H2BZ-pair_S42_L002_R2_001.fastq.gz

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring 3C H2B.Z rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2B.Z from ring stage Plasmodium falciparum 3C subclone


ring 3C H2B.Z rep2

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring 3C H2B.Z rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


ring 3C H2B.Zac rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring 3C H2B.Zac rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2B.Zac from ring stage Plasmodium falciparum 3C subclone


ring 3C H2B.Zac rep2

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring 3C H2B.Zac rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


schizont 3C H2B.Z rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: 3C1_SL5-H2BZ-PAIR_S47_L002_R1_001.fastq.gz

text: 3C1_SL5-H2BZ-PAIR_S47_L002_R2_001.fastq.gz

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C H2B.Z rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2B.Z from schizont stage Plasmodium falciparum 3C subclone


schizont 3C H2B.Z rep2

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C H2B.Z rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


schizont 3C H2B.Zac rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C H2B.Zac rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2B.Zac from schizont stage Plasmodium falciparum 3C subclone


schizont 3C H2B.Zac rep2

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C H2B.Zac rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


ring 3C input rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring 3C input rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq input from ring stage Plasmodium falciparum 3C subclone


ring 3C input rep2

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring 3C input rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


schizont 3C input rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C input rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq input from schizont stage Plasmodium falciparum 3C subclone


schizont 3C input rep2

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont 3C input rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


ring PfSir2AKO H2A.Z rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: ChIP_25_CBDF3ANXX_ACTGATAT_L001_R1.fastq.gz

text: ChIP_25_CBDF3ANXX_ACTGATAT_L001_R2.fastq.gz

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring PfSir2AKO H2A.Z rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2A.Z from ring stage Plasmodium falciparum Sir2AKO mutant


ring PfSir2AKO H2A.Z rep2

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: Parasite cultures were crosslinked with paraformaldehyde and then ChIP-seq was conducted.

text: 200206_A00692_0058_2AR2-10_2AR2-10_MAN-20200101_NEBnext_L000_R1.fastq.gz

text: 200206_A00692_0058_2AR2-10_2AR2-10_MAN-20200101_NEBnext_L000_R2.fastq.gz

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring PfSir2AKO H2A.Z rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: Microbe sample from Plasmodium falciparum 3D7


ring PfSir2AKO H2A.Zac rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: ChIP_27_CBDF3ANXX_ATTCCTTT_L001_R1.fastq.gz

text: ChIP_27_CBDF3ANXX_ATTCCTTT_L001_R2.fastq.gz

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring PfSir2AKO H2A.Zac rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2A.Zac from ring stage Plasmodium falciparum Sir2AKO mutant


ring PfSir2AKO H2A.Zac rep2

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: 200206_A00692_0058_2AR2-11_2AR2-11_MAN-20200101_NEBnext_L000_R1.fastq.gz

text: 200206_A00692_0058_2AR2-11_2AR2-11_MAN-20200101_NEBnext_L000_R2.fastq.gz

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: ring PfSir2AKO H2A.Zac rep2

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture


schizont PfSir2AKO H2A.Z rep1

text: The University of Melbourne

text: live

text: Microbe, viral or environmental

text: Michael Duffy

text: FCHLGMNCCXY_L5_CHKPEI85218050105_1.fq.gz

text: FCHLGMNCCXY_L5_CHKPEI85218050105_2.fq.gz

text: fastq

text: Australia: Melbourne

text: Homo sapiens

text: Illumina NovaSeq 6000

text: laboratory

text: schizont PfSir2AKO H2A.Z rep1

text: paired

text: size fractionation

text: GENOMIC

text: ChIP-Seq

text: Plasmodium falciparum 3D7

text: ILLUMINA

text: cell culture

text: ChIP-Seq of H2A.Z from schizont stage Plasmodium falciparum Sir2AKO mutant