text: Shantou University

text: live

text: Metagenome or environmental

text: animals

text: China: Guangdong, Shantou

text: Scylla paramamosain

text: stomach

text: 23.367662 N 116.596839 E

text: gut metagenome

text: Stomach


status: PUBLIC

characteristic: External Id

text: CAS Key Laboratory of Microbial Physiological & Metabolic Engineering, State Key Laboratory of Mycol

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: Tax ID

text: 0 m

characteristic: altitude

text: CAS Key Laboratory of Microbial Physiological & Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences

text: jie zheng

characteristic: depth

text: Ocean

characteristic: genotype

text: China: Xiamen, Ocean

characteristic: host

text: Noen

text: missing

characteristic: isolate

text: Ocean

text: 39.54 N 116.26 E

text: Alloalcanivorax xenomutans

characteristic: organism

text: single cell

characteristic: strain

text: Microbe sample from Alloalcanivorax xenomutans

characteristic: title


characteristic: External Id

text: Ningbo University

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: not applicable

characteristic: age

characteristic: breed

text: China: Zhejiang

text: Penaeus vannamei

text: missing

text: missing

text: shrimp gut metagenome

text: not collected

characteristic: sex

text: gut

characteristic: tissue

text: Model organism or animal sample from Litopenaeus vannamei gut microbiota


text: Jeju National University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.miscellaneous

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: freshwater environment [ENVO:01000306]

text: Sediment [ ENVO:00002007]

text: sediment permeated by freshwater [ENVO:01001028]

characteristic: environmenal-sample

text: South Korea: Jeju Island

text: sediment

text: 33.2813 N 126.2313 E

text: sediment metagenome

characteristic: metagenome-source

characteristic: metagenomic

text: Methanomassiliicoccus sp.

text: MIMAG Metagenome-assembled Genome sample from Methanomassiliicoccus sp.

type: derived-from


text: Jeju National University

text: live

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:6.0

text: freshwater environment [ENVO:01000306]

text: Sediment [ ENVO:00002007]

text: South Korea: Jeju Island

characteristic: isolate

text: sediment

text: 33.2813 N 126.2313 E

text: sediment metagenome

text: Methanosarcina sp.

characteristic: organism

text: MIMAG Metagenome-assembled Genome sample from Methanosarcina sp.

characteristic: title


characteristic: External Id

text: DLUT

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

text: 15 weeks

characteristic: age

text: China: Dalian

text: Mus musculus

text: male

characteristic: strain

text: Liver

text: Model organism or animal sample from Mus musculus


text: Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Plant

text: two months

text: China: Harbin

text: cutting seedlings

text: Lonicera caerulea

text: Whole plant

characteristic: tissue

text: Plant sample from Lonicera caerulea


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

text: two months

text: China: Harbin

text: cutting seedlings

text: Lonicera caerulea

text: Whole plant

text: Plant sample from Lonicera caerulea


text: Mianyang Hospital of Traditional Chinese Medicine/Mianyang Hospital Affililiated to Chengdu Universi

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: Jinrong Tang

text: China

text: Homo sapiens

characteristic: host

text: cirrhosis

text: blood

text: 31.27 N 104.43 E

text: Campylobacter sp. TJR-1

text: Pathogen: clinical or host-associated sample from Campylobacter sp. TJR-1


name: Daphnia magna LRV0_1 protein coding genes

text: University of Birmingham

text: live

text: Invertebrate

text: Luisa Orsini

text: not applicable

characteristic: breed

text: Luisa Orsini

text: This file contains amino acid sequences translated from protein-coding genes in Daphnia magna (clone LRV0_1), identified by the Funannotate pipeline using ONT and Hi-C data (BioProject ID: PRJNA777104).

characteristic: description

text: Denmark: Lake Ring

text: not applicable

text: Luisa Orsini

text: clone LRV0_1

text: not applicable

text: Daphnia magna

text: female

characteristic: sex

text: whole animal

text: Protein-coding genes identified in Daphnia magna clone LRV0_1


name: GR-RS-M microbial consortium developed from goat rumen contents under mesophilic conditions

text: University of North Bengal

text: live

text: MIGS/MIMS/MIMARKS.food-animal

text: MIMS.me

text: local market

text: Keywords: GSC:MIxS;MIMS:6.0

text: goat rumen microbiome

text: collected in sterile vials

text: goat rumen contents

text: India

text: cattle

text: meAt

text: India

text: land animals:meat

text: not applicable

text: mixed population

characteristic: isolate

text: market in siliguri

text: 26.71 N 88.42 E

text: gut metagenome

characteristic: organism

text: development of goat rumen microbiome based consortium at 37 degrees celcius

text: MIMS Environmental/Metagenome sample from gut metagenome

characteristic: title


name: GR-RS-T microbial consortium developed from goat rumen contents under thermophilic conditions

characteristic: External Id

text: University of North Bengal

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.food-animal

text: MIMS.me

characteristic: SRA accession

text: local market

text: Keywords: GSC:MIxS;MIMS:6.0

text: goat rumen microbiome

text: collected in sterile vials

text: goat rumen contents

text: India

text: cattle

text: meat

text: India

text: land animals;meat

text: not applicable

text: mixed population

text: market in siliguri

text: 26.71 N 88.42 E

text: gut metagenome

text: development of goat rumen microbiome based consortium at 60 degrees celcius


text: Shenyang Pharmaceutical University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: missing

text: Rattus norvegicus

text: missing

text: missing

text: feces metagenome

characteristic: tmp


text: Gansu Agricultural University

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: CON

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 1

characteristic: replicate

text: Metagenome or environmental sample from sheep gut metagenome


text: Gansu Agricultural University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: CON

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 2


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: China:Gansu

text: Hu Sheep

text: CON

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 3


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

characteristic: host

text: CON

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 4


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: CON

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 5


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: CON

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 6


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: LYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 1


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: LYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 2


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: LYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 3


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: LYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 4


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: LYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 5


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: LYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 6


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: HYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 1


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: HYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 2


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: HYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 3


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: HYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 4


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: HYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 5


text: Gansu Agricultural University

text: live

text: Metagenome or environmental

text: China:Gansu

text: Hu Sheep

text: HYC

text: not collected

text: sheep gut metagenome

text: replicate = biological replicate 6


Chewingum

text: Bharathidasan University

text: live

text: Metagenome or environmental

text: not applicable

text: Homo sapiens

text: Human Saliva

text: not applicable

text: human saliva metagenome

text: Chewingum

text: Metagenome or environmental sample from human saliva metagenome


Toothpaste

text: Bharathidasan University

text: live

text: Metagenome or environmental

text: not applicable

text: Homo sapiens

text: Human Saliva

text: not applicable

text: human saliva metagenome

text: Toothpaste


Mouthwash

text: Bharathidasan University

text: live

text: Metagenome or environmental

text: not applicable

text: Homo sapiens

text: Human Saliva

text: not applicable

text: human saliva metagenome

text: Mouthwash


Yogurt

text: Bharathidasan University

text: live

text: Metagenome or environmental

text: not applicable

text: Homo sapiens

text: Human Saliva

text: not applicable

text: human saliva metagenome

text: Yogurt


Old Tom

text: Flinders University

text: live

text: Model organism or animal

text: Adult

characteristic: age

text: not collected

characteristic: breed

text: not collected

characteristic: cultivar

text: Eastern Australia

characteristic: ecotype

text: Australia: Eden

text: not collected

text: 37.06 S 149.90 E

text: Orcinus orca

text: male

text: not collected

characteristic: strain

text: Tooth/Jaw

characteristic: tissue

text: Old Tom


Kattegat

characteristic: External Id

text: Flinders University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Adult

text: not collected

text: not collected

text: North Atlatnic

text: Denmark: Kattegat Sea

text: not collected

characteristic: isolate

text: Orcinus orca

characteristic: organism

text: male

characteristic: sex

text: not collected

text: Tooth

text: Natural History Museum of Denmark, collection ID:1x

characteristic: title


text: Flinders University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Model organism or animal

characteristic: SRA accession

text: Adult

text: not collected

text: not collected

text: Eastern Australia

text: Australia: Tasmania

text: not collected

text: 42.85 S 147.5 E

text: Orcinus orca

text: male

text: not collected

text: Skin

text: Tasmania Museum of Art and Gallery: A4183


text: Flinders University

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Adult

text: not collected

text: not collected

text: Eastern Australia

text: Australia: Tasmania

text: not collected

text: 41.10 S 146.71 E

text: Orcinus orca

text: not collected

text: not collected

text: Skin

text: Tasmania Museum of Art and Gallery: BABD180119


text: Flinders University

text: live

text: Model organism or animal

text: Subadult

characteristic: age

text: not collected

characteristic: breed

text: not collected

characteristic: cultivar

text: Eastern Australia

text: Australia: Queensland

text: not collected

text: 25.60 S 153.02 E

text: Orcinus orca

text: female

text: not collected

text: Skin

text: Australian Antarctic Division ID:13KWHB001


text: Flinders University

text: live

text: Model organism or animal

text: Adult

text: not collected

text: not collected

text: Eastern Australia

characteristic: ecotype

text: Australia: Queensland

text: not collected

text: 25.60 S 152.95 E

text: Orcinus orca

text: female

text: not collected

characteristic: strain

text: Skin

characteristic: tissue

text: Australian Antarctic Division ID:13KWHB002


characteristic: External Id

text: Flinders University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Adult

text: not collected

text: not collected

text: Eastern Australia

text: Australia: Queensland

text: not collected

characteristic: isolate

text: 25.60 S 153.95 E

text: Orcinus orca

text: female

text: not collected

text: Skin

text: Australian Antarctic Division ID:13KWHB003


Bunbury, WA

text: Flinders University

text: live

text: Model organism or animal

text: Calf

text: not collected

text: not collected

text: Midwestern Australia

text: Australia: Midwestern Australia

text: not collected

text: 34.22 S 115.03 E

text: Orcinus orca

characteristic: organism

text: not collected

characteristic: sex

text: not collected

text: Skin

text: CETREC WA: Bunbury, WA

characteristic: title


Hamelin Bay, WA

text: Flinders University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Model organism or animal

text: Adult

text: not collected

text: not collected

text: Midwestern Australia

text: Australia: Midwestern Australia

text: not collected

text: 33.25 S 115.62 E

text: Orcinus orca

text: not collected

text: not collected

text: Skin

text: CETREC WA: Hamelin Bay, WA


text: Flinders University

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: SRA accession

text: Unknown

text: not collected

text: not collected

text: Southwestern Australia

text: Australia: Southwestern Australia

text: not collected

text: 35.46 S 119.36 E

text: Orcinus orca

text: male

text: not collected

text: Skin

text: CETREC WA: Urkel


text: Flinders University

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: Unknown

characteristic: age

text: not collected

characteristic: breed

text: not collected

text: Southwestern Australia

text: Australia: Southwestern Australia

text: not collected

text: 35.46 S 119.36 E

text: Orcinus orca

text: female

text: not collected

text: Skin

text: CETREC WA:Kwiliana


text: Flinders University

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

characteristic: cultivar

text: Southwestern Australia

characteristic: ecotype

text: Australia: Southwestern Australia

text: not collected

text: 35.46 S 119.36 E

text: Orcinus orca

text: male

text: not collected

characteristic: strain

text: Skin

text: CETREC WA:Noosa


characteristic: External Id

text: Flinders University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Southwestern Australia

text: Australia: Southwestern Australia

text: not collected

text: 35.46 S 119.36 E

text: Orcinus orca

text: male

text: not collected

text: Skin

characteristic: tissue

text: CETREC WA:Adina


text: Flinders University

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Southwestern Australia

text: Australia: Southwestern Australia

text: not collected

characteristic: isolate

text: 35.46 S 119.36 E

text: Orcinus orca

characteristic: organism

text: male

characteristic: sex

text: not collected

text: Skin

text: CETREC WA:Jandamarra


text: Flinders University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Southwestern Australia

text: Australia: Southwestern Australia

text: not collected

text: 35.46 S 119.36 E

text: Orcinus orca

text: female

text: not collected

text: Skin

text: CETREC WA:Nicki

characteristic: title


text: Flinders University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

text: Unknown

text: not collected

text: not collected

text: Southwestern Australia

text: Australia: Southwestern Australia

text: not collected

text: 35.46 S 119.36 E

text: Orcinus orca

text: female

text: not collected

text: Skin

text: CETREC WA:Jagger


text: Flinders University

text: live

text: Model organism or animal

characteristic: NCBI submission package

characteristic: SRA accession

text: Unknown

characteristic: age

text: not collected

text: not collected

text: Southwestern Australia

text: Australia: Southwestern Australia

text: not collected

text: 34.83 S 119.51 E

text: Orcinus orca

text: male

text: not collected

text: Skin

text: Unknown


text: Flinders University

text: live

text: Model organism or animal

text: Unknown

text: not collected

characteristic: breed

text: not collected

characteristic: cultivar

text: Southwestern Australia

characteristic: ecotype

text: Australia: Southwestern Australia

text: not collected

text: 34.76 S 119.61 E

text: Orcinus orca

text: female

text: not collected

text: Skin

text: Unknown


characteristic: External Id

text: Flinders University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Southwestern Australia

text: Australia: Southwestern Australia

text: not collected

text: 34.76 S 119.61 E

text: Orcinus orca

text: not collected

text: not collected

characteristic: strain

text: Skin

text: CETREC WA: Billie


text: Flinders University

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

characteristic: isolate

text: 21.95 S 113.95 E

text: Orcinus orca

characteristic: organism

text: male

text: not collected

text: Skin

characteristic: tissue

text: CETREC WA:Kitz


text: Flinders University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

text: 22.05 S 113.86 E

text: Orcinus orca

text: male

characteristic: sex

text: not collected

text: Skin

text: CETREC WA:Chops


text: Flinders University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

text: 21.20 S 113.91 E

text: Orcinus orca

text: male

text: not collected

text: Skin

text: CETREC WA:Augie

characteristic: title


text: Flinders University

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Unknown

text: not collected

text: not collected

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

text: 21.86 S 113.97 E

text: Orcinus orca

text: female

text: not collected

text: Skin

text: CETREC WA:Chips


text: Flinders University

text: live

text: Model organism or animal

text: Unknown

characteristic: age

text: not collected

characteristic: breed

text: not collected

characteristic: cultivar

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

text: 21.70 S 113.96 E

text: Orcinus orca

text: female

text: not collected

text: Skin

text: CETREC WA:Wisp


characteristic: External Id

text: Flinders University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Northwestern Australia

characteristic: ecotype

text: Australia: Northwestern Australia

text: not collected

text: 22.06 S 113.88 E

text: Orcinus orca

text: female

text: not collected

text: Skin

text: CETREC WA:Hook


text: Flinders University

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

characteristic: isolate

text: 21.97 S 113.86 E

text: Orcinus orca

characteristic: organism

text: male

text: not collected

characteristic: strain

text: Skin

text: CETREC WA:Gus


text: Flinders University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

text: 22.01 S 113.82 E

text: Orcinus orca

text: not collected

text: not collected

text: Skin

characteristic: tissue

text: CETREC WA:Pimp


text: Flinders University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

text: 22.02 S 113.84 E

text: Orcinus orca

text: not collected

characteristic: sex

text: not collected

text: Skin

text: CETREC WA:Jigsaw


text: Flinders University

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Unknown

text: not collected

text: not collected

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

text: 22.04 S 114.31 E

text: Orcinus orca

text: not collected

text: not collected

text: Skin

text: CETREC WA:Felix

characteristic: title


text: Flinders University

text: live

text: Model organism or animal

characteristic: SRA accession

text: Unknown

characteristic: age

text: not collected

characteristic: breed

text: not collected

text: Northwestern Australia

text: Australia: Northwestern Australia

text: not collected

text: 22.03 S 114.32 E

text: Orcinus orca

text: not collected

text: not collected

text: Skin

text: CETREC WA:Billie


Margaret Cove

characteristic: External Id

text: Flinders University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Unknown

text: not collected

text: not collected

characteristic: cultivar

text: Southwestern Australia

text: Australia: Southwestern Australia

text: not collected

text: 33.87 S 121.02 E

text: Orcinus orca

text: not collected

text: not collected

text: Skin

text: South West Fisheries Science Centre, ID: 123049


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

characteristic: organism

text: missing

text: missing

text: enteritidis

characteristic: serovar

text: human

text: Salmonella enterica


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Typhi

text: human

characteristic: strain

text: Salmonella enterica


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Thompson

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Agbeni

text: human

text: Salmonella enterica


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0091/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0091/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service

text: Genomic Surveillance of SARS-CoV-2 in South Africa

characteristic: title


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0092/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0092/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Vanguard CHC wc VGC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0109/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0109/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Clinic-in-Asla

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0143/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0143/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Eyethu Clinic wc EYE

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0144/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0144/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: D'Almeida Clinic wc DAL

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0292/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0292/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0315/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0315/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0341/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0341/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kwanokuthula CDC wc KWA

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0976/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0976/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-1133/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-1133/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-1165/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-1165/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-1266/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-1266/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kranshoek Clinic wc KSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-1319/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-1319/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Victoria Hospital wc VHW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2233/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2233/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Alma CDC wc AHC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2235/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2235/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Guguletu CHC wc GDH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2393/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2393/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Alma CDC wc AHC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2402/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2402/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: New Somerset Hospital wc NSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2424/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2424/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2431/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2431/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Vanguard CHC wc VGC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2437/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2437/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2457/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2457/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: False Bay Hospital wc FBH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2479/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2479/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2499/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2499/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2514/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2514/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: New Somerset Hospital wc NSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2537/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2537/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Victoria Hospital wc VHW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2679/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2679/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2680/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2680/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Victoria Hospital wc VHW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2685/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2685/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2724/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2724/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Vanguard CHC wc VGC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2848/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2848/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2853/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2853/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2895/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2895/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2904/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2904/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: 2 Military Hospital wc MAA

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2926/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2926/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2939/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2939/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-2978/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-2978/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3052/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3052/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: New Somerset Hospital wc NSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3063/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3063/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: District 6 CDC wc DSI

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3100/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3100/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Guguletu CHC wc GDH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3114/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3114/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Guguletu CHC wc GDH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3142/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3142/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Victoria Hospital wc VHW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3149/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3149/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3157/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3157/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Guguletu CHC wc GDH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3177/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3177/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3191/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3191/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Du Noon CDC wc DNC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3218/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3218/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Red Cross Children's Hospital wc RXH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3222/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3222/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3232/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3232/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3239/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3239/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3251/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3251/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3253/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3253/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3294/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3294/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3598/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3598/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3622/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3622/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Vanguard CHC wc VGC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3665/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3665/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Eyethu Clinic wc EYE

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3704/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3704/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3723/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3723/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3743/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3743/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3779/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3779/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Guguletu CHC wc GDH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3804/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3804/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3827/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3827/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Guguletu CHC wc GDH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3835/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3835/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Du Noon CDC wc DNC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3879/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3879/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Brooklyn Chest Hospital wc BCH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3887/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3887/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3925/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3925/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Clinic-in-Asla

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3935/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3935/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3963/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3963/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Victoria Hospital wc VHW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-3981/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-3981/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Lentegeur Hospital wc LGH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4022/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4022/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Pelican Park CDC wc PAX

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4026/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4026/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Alma CDC wc AHC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4113/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4113/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Alma CDC wc AHC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4120/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4120/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Clinic-in-Asla

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4142/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4142/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: 2 Military Hospital wc MAA

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4152/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4152/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: False Bay Hospital wc FBH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4178/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4178/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Du Noon CDC wc DNC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4255/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4255/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4648/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4648/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: False Bay Hospital wc FBH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4762/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4762/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Victoria Hospital wc VHW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4793/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4793/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: False Bay Hospital wc FBH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4954/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4954/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: George Hospital wc GRH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4983/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4983/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-9030/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-9030/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-9035/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-9035/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-9131/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-9131/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mowbray Maternity Hospital wc MMH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-9204/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-9204/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-9239/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-9239/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Riversdale Clinic wc RAV

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-9337/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-9337/2020

text: missing


text: CIBNOR

text: live

text: Microbe, viral or environmental

text: environment

text: shimp farm

text: shimp farm

text: Mexico: Mazatlan

text: shrimp

text: shrimp hepatopancreas

text: 23.2302 N 106.4132 W

text: TCBS isolate

characteristic: note

text: Vibrio sp. T13N

text: biological replicate 1

characteristic: replicate

text: pure culture

characteristic: sample-type


characteristic: External Id

text: CIBNOR

text: live

text: Microbe, viral or environmental

text: environment

text: shimp farm

text: shimp farm

text: Mexico: Mazatlan

text: shrimp

text: shrimp hepatopancreas

text: 23.2302 N 106.4132 W

text: TCBS isolate

text: Vibrio parahaemolyticus

text: biological replicate 2

text: pure culture


text: CIBNOR

text: live

text: Microbe, viral or environmental

text: environment

text: shimp farm

text: shimp farm

text: Mexico: Mazatlan

text: shrimp

characteristic: host

text: shrimp hepatopancreas

text: 23.2302 N 106.4132 W

text: TCBS isolate

text: Vibrio diabolicus

text: biological replicate 3

text: pure culture


text: CIBNOR

text: live

text: Microbe, viral or environmental

text: environment

text: shimp farm

text: shimp farm

text: Mexico: Mazatlan

text: shrimp

text: shrimp hepatopancreas

text: 23.2302 N 106.4132 W

text: TCBS isolate

text: Vibrio diabolicus

text: biological replicate 4

text: pure culture


text: CIBNOR

text: live

text: Microbe, viral or environmental

text: environment

text: shimp farm

text: shimp farm

text: Mexico: Mazatlan

text: shrimp

text: shrimp hepatopancreas

text: 23.2302 N 106.4132 W

text: TCBS isolate

text: Vibrio diabolicus

text: biological replicate 5

text: pure culture


text: University of Cape Town

characteristic: INSDC secondary accession

text: live

text: SARS-CoV-2: clinical or host-associated

text: Moorreesburg Clinic wc MRB

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-M512/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-M512/2021

characteristic: isolate

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Bothasig CDC wc BLD

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-M595/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-M595/2021

text: missing

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


text: University of Cape Town

characteristic: INSDC center name

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mfuleni CDC wc MFU

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-M667/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-M667/2021

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

characteristic: INSDC first public

text: live

text: SARS-CoV-2: clinical or host-associated

text: Swellendam PHC Clinic wc SHC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-M686/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-M686/2021

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Macassar CDC wc MCP

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-M710/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-M710/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Ikhwezi CDC wc IKW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-M730/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-M730/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kleinmond Clinic wc KMC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-M774/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-M774/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Vredenburg Hospital wc VBG

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-N073/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-N073/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Caledon Clinic wc CAL

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-N077/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-N077/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Vredendal Central Clinic wc VDC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-N293/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-N293/2021

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Bothasig CDC wc BLD

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-N551/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-N551/2021

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Bothasig CDC wc BLD

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-N552/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-N552/2021

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Bothasig CDC wc BLD

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-N588/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-N588/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Barrydale Clinic wc BDH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-N640/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-N640/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: DP Marais Hospital wc DPM

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-N972/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-N972/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Genadendal Clinic wc GDC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-O129/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O129/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Lentegeur Hospital wc LGH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-O290/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O290/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Swellendam Hospital wc SWE

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-O316/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O316/2022

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Paarl Hospital wc PAH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-O500/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O500/2022

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Darling Clinic wc DRL

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-P731/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-P731/2021

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Stellenbosch Hospital wc STB

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-Q814/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-Q814/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: New Somerset Hospital wc NSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-Q963/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-Q963/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Helderberg Hospital wc HHH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R007/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R007/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: DP Marais Hospital wc DPM

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R026/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R026/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Brooklyn Chest Hospital wc BCH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R060/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R060/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: New Somerset Hospital wc NSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R064/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R064/2022

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Malmesbury CDC wc MAW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R140/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R140/2022

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Worcester Hospital wc WOC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R143/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R143/2022

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: New Somerset Hospital wc NSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R211/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R211/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: New Somerset Hospital wc NSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R232/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R232/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Ceres Hospital wc CRS

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R236/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R236/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Worcester Hospital wc WOC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R334/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R334/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Ceres Hospital wc CRS

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R341/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R341/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: New Somerset Hospital wc NSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R354/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R354/2022

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Paarl Hospital wc PAH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R360/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R360/2022

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kleinmond Clinic wc KMC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-R838/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-R838/2022

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Brooklyn Chest Hospital wc BCH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-S939/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-S939/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Worcester Hospital wc WOC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T242/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T242/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Vredendal Hospital wc VRE

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T317/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T317/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kayamandi Clinic wc KMP

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T327/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T327/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Swellendam PHC Clinic wc SHC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T472/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T472/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Ikhwezi CDC wc IKW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T477/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T477/2022

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Swartland Hospital wc SWA

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T493/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T493/2022

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Albow Gardens Clinic wc ALB

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T497/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T497/2022

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Paarl Hospital wc PAH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T501/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T501/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Swellendam PHC Clinic wc SHC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T562/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T562/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Grabouw Mobile 2 wc GWY

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T706/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T706/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Langa Clinic wc LAN

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T713/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T713/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Paarl Hospital wc PAH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-T861/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-T861/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Knysna Hospital wc KNY

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AB31/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AB31/2021

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Plettenberg Bay Clinic wc PLC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AB37/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AB37/2021

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kwanokuthula CDC wc KWA

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AC24/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AC24/2021

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AE29/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AE29/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AE65/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AE65/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: False Bay Hospital wc FBH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AH07/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AH07/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Sedgefield Clinic wc SGE

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AH24/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AH24/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AH59/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AH59/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Plettenberg Bay Clinic wc PLC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AH64/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AH64/2021

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AJ52/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AJ52/2021

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AK01/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AK01/2021

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Thembalethu CDC wc THC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AK61/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AK61/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Beaufort West CDC wc BWC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AK92/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AK92/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Conville CDC wc CVC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AN02/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AN02/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Conville CDC wc CVC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AQ56/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AQ56/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-AV63/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-AV63/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Khayelethu Clinic wc KLC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BC49/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BC49/2022

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BD72/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BD72/2021

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BF84/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BF84/2021

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BG61/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BG61/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BG80/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BG80/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Pacaltsdorp Clinic wc PAC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BN95/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BN95/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Plettenberg Bay Clinic wc PLC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BP41/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BP41/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BP74/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BP74/2022

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BQ65/2022

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BQ65/2022

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Thembalethu CDC wc THC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BR01/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BR01/2022

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-BY37/2022

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BY37/2022

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: George Hospital wc GRH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-E704/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-E704/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kranshoek Clinic wc KSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-E715/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-E715/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Knysna CDC wc WLC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-E762/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-E762/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Still Bay Sat Clinic wc SFV

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-G271/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-G271/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kwanokuthula CDC wc KWA

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-H995/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H995/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kwanokuthula CDC wc KWA

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-H996/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H996/2021

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Kwanokuthula CDC wc KWA

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-I655/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I655/2021

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Thembalethu CDC wc THC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-I816/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I816/2021

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Riversdale Clinic wc RAV

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-I830/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I830/2021

text: missing


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: PulseNet

text: missing

text: missing

characteristic: serovar

text: human

characteristic: strain

text: Salmonella enterica


text: University of Cape Town

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: Wellington CDC wc WHC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-6964/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-6964/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Wesfleur Hospital wc WFH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GP-K050/2021

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-K050/2021

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: False Bay Hospital wc FBH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0173/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0173/2020

text: missing

characteristic: title


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: New Somerset Hospital wc NSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0334/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0334/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Guguletu Clinic wc GUG

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-0514/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-0514/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4058/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4058/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Alma CDC wc AHC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4121/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4121/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Knysna CDC wc WLC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4247/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4247/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Brooklyn Chest Hospital wc BCH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4362/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4362/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4371/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4371/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: False Bay Hospital wc FBH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4490/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4490/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4507/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4507/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Victoria Hospital wc VHW

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4939/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4939/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Guguletu CHC wc GDH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-4947/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-4947/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Conville CDC wc CVC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-7129/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-7129/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: False Bay Hospital wc FBH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-7223/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-7223/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Plettenberg Bay Clinic wc PLC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-7599/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-7599/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: CoVid WC Garden Route

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-7736/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-7736/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mowbray Maternity Hospital wc MMH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-8197/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-8197/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: George Hospital wc GRH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-8222/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-8222/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Red Cross Children's Hospital wc RXH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-8231/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-8231/2020

text: missing

text: Severe acute respiratory syndrome coronavirus 2


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-8379/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-8379/2020

text: missing

text: Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-8453/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-8453/2020

text: missing

text: Genomic Surveillance of SARS-CoV-2 in South Africa


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-8651/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-8651/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mossel Bay Hospital wc MBY

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-8699/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-8699/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Brooklyn Chest Hospital wc BCH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-8725/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-8725/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mitchells Plain Hospital wc MPH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-9232/2020

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-9232/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Conville CDC wc CVC

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-9309/2020

text: Homo sapiens

text: male

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-9309/2020

text: missing


text: University of Cape Town

text: live

text: SARS-CoV-2: clinical or host-associated

text: Groote Schuur Hospital wc GSH

text: South Africa:Western Cape

text: hCoV-19/SouthAfrica/NHLS-UCT-GS-9452/2021

text: Homo sapiens

text: female

text: SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-9452/2021

text: missing

text: Severe acute respiratory syndrome coronavirus 2