text: Weill Cornell Medicine

text: live

text: Generic

text: Naive B

text: missing

text: CD45R(B220)+ CD38+ CD95(Fas)- IgD+

text: missing

text: Mus musculus

text: splenocytes

text: Naïve B cell rep 3


status: PUBLIC

characteristic: External Id

text: Weill Cornell Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Naive B

tag: attribute

characteristic: cell type

text: missing

text: CD45R(B220)+ CD38+ CD95(Fas)- IgD+

characteristic: facs markers

text: missing

text: Mus musculus

characteristic: organism

text: splenocytes

characteristic: strain

text: Naïve B cell rep 2

characteristic: title


text: Weill Cornell Medicine

text: live

text: Generic

text: Naive B

text: missing

text: CD45R(B220)+ CD38+ CD95(Fas)- IgD+

text: missing

text: Mus musculus

text: splenocytes

text: Naïve B cell rep 1


text: Weill Cornell Medicine

text: live

text: Generic

text: Germinal Center B cell

text: missing

text: CD45R(B220)+ CD95(FAS)+ GL7+

text: missing

text: Mus musculus

text: splenocytes

text: GC B cell rep 5


text: Weill Cornell Medicine

text: live

text: Generic

text: Germinal Center B cell

text: missing

text: CD45R(B220)+ CD95(FAS)+ GL7+

text: missing

text: Mus musculus

text: splenocytes

text: GC B cell rep 4


text: Weill Cornell Medicine

text: live

text: Generic

text: Germinal Center B cell

text: missing

text: CD45R(B220)+ CD95(FAS)+ GL7+

text: missing

text: Mus musculus

text: splenocytes

text: GC B cell rep 3


text: Weill Cornell Medicine

text: live

text: Generic

text: Germinal Center B cell

text: missing

text: CD45R(B220)+ CD95(FAS)+ GL7+

text: missing

text: Mus musculus

text: splenocytes

text: GC B cell rep 2


text: Weill Cornell Medicine

text: live

text: Generic

text: Germinal Center B cell

text: missing

text: CD45R(B220)+ CD95(FAS)+ GL7+

text: missing

text: Mus musculus

text: splenocytes

text: GC B cell rep 1


text: University of Missouri

text: live

text: SARS-CoV-2: wastewater surveillance

text: MO DHSS

text: USA: Missouri

text: wastewater

text: wastewater metagenome

text: University of Missouri

text: Variable

text: raw wastewater

text: composite

text: yes


text: BOWEN UNIVERSITY

text: live

text: One Health Enteric

text: Akinola, Omowumi

text: Nigeria: Osun

text: Hospital wastewater

text: Pseudomonas aeruginosa

text: Research

text: environmental

text: microbial

text: One Health Enteric sample from Pseudomonas aeruginosa


text: Schulenburg, Evolutionary Ecology and Genetics, Kiel University

text: live

text: Generic

text: missing

text: wild type, N2

characteristic: genotype

text: missing

characteristic: infection

text: Caenorhabditis elegans

text: 1 d adults grown on P. fluorescens MYb115 ∆sgaAB and infected with Bt247 from L4 to 1 d adult

text: whole organism

characteristic: tissue

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: missing

text: wild type, N2

text: missing

text: not infected

text: Caenorhabditis elegans

text: 1 d adults grown on P. fluorescens MYb115 ∆sgaAB

text: whole organism


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: missing

text: wild type, N2

text: missing

text: Caenorhabditis elegans

text: 1 d adults grown on P. fluorescens MYb115 and infected with Bt247 from L4 to 1 d adult

text: whole organism


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: missing

text: wild type, N2

text: missing

text: not infected

text: Caenorhabditis elegans

text: 1 d adults grown on P. fluorescens MYb115

text: whole organism


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: missing

text: wild type, N2

text: missing

text: Caenorhabditis elegans

text: whole organism


text: live

text: Generic

characteristic: SRA accession

text: missing

text: wild type, N2

text: missing

text: Caenorhabditis elegans

text: whole organism


text: Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences & Peking Union Medical College

text: live

text: Generic

text: male

characteristic: Sex

text: missing

text: high-fat diet

characteristic: diet

text: wild type

text: missing

text: Mus musculus

text: liver

characteristic: time point

text: liver

text: Insulin-resistant mouse liver 3, HFD-12w group

text: PBS perfusion


text: live

text: Generic

text: male

text: missing

text: high-fat diet

text: wild type

text: missing

text: Mus musculus

characteristic: organism

text: liver

characteristic: strain

text: liver

text: Insulin-resistant mouse liver 2, HFD-12w group

characteristic: title

text: PBS perfusion


text: live

text: Generic

text: male

text: missing

text: high-fat diet

text: wild type

characteristic: genotype

text: missing

text: Mus musculus

text: liver

text: liver

characteristic: tissue

text: Insulin-resistant mouse liver 1, HFD-12w group

text: PBS perfusion


characteristic: External Id

text: live

text: Generic

text: male

text: missing

text: high-fat diet

text: wild type

text: missing

text: Mus musculus

text: liver

text: liver

text: Insulin-sensitive obese mouse liver 3, HFD-4w group

text: PBS perfusion

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: male

text: missing

text: high-fat diet

text: wild type

text: missing

text: Mus musculus

text: liver

text: liver

text: Insulin-sensitive obese mouse liver 2, HFD-4w group

text: PBS perfusion


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: male

text: missing

text: high-fat diet

text: wild type

text: missing

text: Mus musculus

text: liver

text: liver

text: Insulin-sensitive obese mouse liver 1, HFD-4w group

text: PBS perfusion


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: male

text: missing

text: normal standard chow diet

text: wild type

text: missing

text: Mus musculus

text: liver

text: liver

text: Control mouse liver 3, ND group

text: PBS perfusion


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: male

text: missing

text: normal standard chow diet

text: wild type

text: missing

text: Mus musculus

text: liver

text: liver

text: Control mouse liver 2, ND group

text: PBS perfusion


text: live

text: Generic

text: male

characteristic: Sex

text: missing

text: normal standard chow diet

characteristic: diet

text: wild type

text: missing

text: Mus musculus

text: liver

text: liver

text: Control mouse liver 1, ND group

text: PBS perfusion


Bacillus amyloliquefaciens CUN9

text: The University of the West Indies

text: live

text: Microbe, viral or environmental

text: missing

characteristic: altitude

text: Plant Pathology Lab, Department of Food Production, University of the West Indies, Trinidad

text: Augustus Thomas

text: not provided

text: 0-20cm below soil level

characteristic: depth

text: missing

text: missing

text: Trinidad and Tobago: Trinidad, Cunupia

text: soil rhizosphere

text: Augustus Thomas

text: missing

characteristic: isolate

text: soil rhizosphere

text: missing

text: 10.534236 N 61.388259 W

text: Not applicable

text: missing

text: Bacillus amyloliquefaciens

characteristic: organism

text: Missing

text: cell culture

text: Not applicable

characteristic: serotype

text: Not applicable

characteristic: serovar

text: Not applicable

text: 27-32 degrees celcius

characteristic: temp

text: Microbe sample from Bacillus amyloliquefaciens


characteristic: External Id

text: North West Agriculture and Forestry University

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: biological replicate 1

characteristic: Replicate

text: China:Yangling

text: Wheat

characteristic: host

text: Fusarium graminearum

text: tissue sample

characteristic: strain

text: Perithecia from carrot agar plates 7 days post-fertilization

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: biological replicate 2

text: China:Yangling

text: Wheat

text: Fusarium graminearum

text: tissue sample


text: live

text: Microbe, viral or environmental

text: biological replicate 3

characteristic: SRA accession

text: China:Yangling

text: Wheat

text: Fusarium graminearum

text: tissue sample


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: Salmonella enterica

characteristic: organism

text: missing

text: South Carolina Department of Health and Environmental Control

text: Javiana

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Braenderup

characteristic: serovar

text: missing

text: Salmonella enterica


text: University of Missouri

text: live

text: SARS-CoV-2: wastewater surveillance

text: MDHHS

text: USA: Michigan

text: wastewater

text: wastewater metagenome

text: University of Missouri

text: Variable

text: raw wastewater

text: composite

text: yes


text: University Medical Center Hamburg-Eppendorf

text: live

text: Generic

characteristic: cell type

text: missing

text: CAST

characteristic: genotype

text: missing

text: Mus musculus

text: kidney

text: kidney

characteristic: tissue

text: cGN

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: MAIT

text: missing

text: CAST

text: missing

text: Mus musculus

text: kidney

text: kidney


text: live

text: Generic

text: MAIT

text: missing

text: CAST

text: missing

text: Mus musculus

text: kidney

text: kidney

characteristic: title

text: cGN


text: University of Alicante

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: All Vm strains

characteristic: Treatmentt

text: Spain: Tabarca, Alicante

text: Oculina patagonica

characteristic: host

text: not applicable

text: coral mucus

text: not applicable

text: missing

text: coral metagenome

text: whole organism

text: Metagenome or environmental sample from coral metagenome


text: University of Alicante

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: OcU_367 and OcU_317

text: Spain: Tabarca, Alicante

text: Oculina patagonica

text: not applicable

text: coral mucus

text: 'not collected

text: missing

text: coral metagenome

text: whole organism


text: University of Alicante

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Spain: Tabarca, Alicante

text: Oculina patagonica

text: not applicable

text: coral mucus

text: 'not collected

text: missing

text: coral metagenome

text: whole organism


text: University of Alicante

text: live

text: Metagenome or environmental

text: coral mucus at 28ºC

text: Spain: Tabarca, Alicante

text: Oculina patagonica

text: not applicable

characteristic: isolate

text: coral mucus

text: 'not collected

text: missing

text: coral metagenome

characteristic: organism

text: whole organism


text: University of Alicante

text: live

text: Metagenome or environmental

text: Control

text: Spain: Tabarca, Alicante

text: Oculina patagonica

text: not applicable

text: coral mucus

text: 'not collected

text: missing

text: coral metagenome

text: whole organism


text: live

text: Pathogen.cl

text: NYC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

characteristic: serovar

characteristic: strain

text: Escherichia coli


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: Escherichia coli


text: Jilin Agricultural University

text: live

text: Metagenome or environmental

text: China:Changchun

text: sheep

text: rumen fluid

text: 43.82 N 125.41 E

text: sheep gut metagenome

text: Metagenome or environmental sample from sheep gut metagenome


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: Listeria monocytogenes


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


Aedes koreicus pupa

text: Fondazione Edmund Mach

text: live

text: Invertebrate

text: Fondazione Edmund Mach: Applied Ecology Unit

text: Pupa

text: Italy: Trentino

text: not applicable

text: not applicable

text: Aedes koreicus

text: not applicable

characteristic: tissue

text: Invertebrate sample from Aedes koreicus


Aedes japonicus pupa

characteristic: External Id

text: Fondazione Edmund Mach

text: live

text: Invertebrate

text: stituto Zooprofilattico Sperimentale delle Venezie

text: Pupa

text: Italy: Friuli Venezia Giulia

text: not applicable

text: not applicable

text: Aedes japonicus

text: not applicable

text: Invertebrate sample from Aedes japonicus


text: Medical College of Wisconsin

characteristic: INSDC center name

text: live

text: Human

text: not applicable

characteristic: age

text: Todd Miller, Medical College of Wisconsin, 8701 W Watertown Plank Rd, Milwaukee, WI 53226

text: MCF-7/shCtrl HD rep 1

text: not applicable

text: MCF-7/shCtrl cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with vehicle for 24 hours. Replicate 1.

characteristic: description

text: breast cancer

characteristic: disease

text: not applicable

text: not applicable

text: Homo sapiens

text: female

characteristic: sex

text: not applicable

text: MCF-7/shCtrl cells, hormone-deprived, rep 1


text: Medical College of Wisconsin

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Human

text: not applicable

text: MCF-7/shCtrl HD rep 2

text: not applicable

text: MCF-7/shCtrl cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with vehicle for 24 hours. Replicate 2.

text: breast cancer

text: not applicable

text: not applicable

text: Homo sapiens

text: female

text: not applicable

text: MCF-7/shCtrl cells, hormone-deprived, rep 2

characteristic: title


text: Medical College of Wisconsin

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Human

characteristic: NCBI submission model

text: not applicable

text: MCF-7/shCtrl HD rep 3

text: not applicable

text: MCF-7/shCtrl cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with vehicle for 24 hours. Replicate 3.

text: breast cancer

text: not applicable

text: not applicable

text: Homo sapiens

text: female

text: not applicable

text: MCF-7/shCtrl cells, hormone-deprived, rep 3


text: Medical College of Wisconsin

text: live

text: Human

characteristic: NCBI submission package

characteristic: SRA accession

text: not applicable

text: MCF-7/shCtrl E2 rep 1

text: not applicable

text: MCF-7/shCtrl cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with 1 nM E2 for 24 hours. Replicate 1.

text: breast cancer

text: not applicable

text: not applicable

characteristic: isolate

text: Homo sapiens

text: female

text: not applicable

text: MCF-7/shCtrl cells, E2-treated, rep 1


text: Medical College of Wisconsin

text: live

text: Human

text: not applicable

text: MCF-7/shCtrl E2 rep 2

text: not applicable

text: MCF-7/shCtrl cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with 1 nM E2 for 24 hours. Replicate 2.

text: breast cancer

text: not applicable

text: not applicable

text: Homo sapiens

characteristic: organism

text: female

text: not applicable

text: MCF-7/shCtrl cells, E2-treated, rep 2


text: Medical College of Wisconsin

text: live

text: Human

text: not applicable

text: MCF-7/shCtrl E2 rep 3

text: not applicable

text: MCF-7/shCtrl cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with 1 nM E2 for 24 hours. Replicate 3.

text: breast cancer

text: not applicable

text: not applicable

text: Homo sapiens

text: female

text: not applicable

characteristic: tissue

text: MCF-7/shCtrl cells, E2-treated, rep 3


characteristic: External Id

text: Medical College of Wisconsin

text: live

text: Human

text: not applicable

text: MCF-7/shTRIM33 HD rep 1

text: not applicable

text: MCF-7/shTRIM33 cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with vehicle for 24 hours. Replicate 1.

text: breast cancer

text: not applicable

text: not applicable

text: Homo sapiens

text: female

text: not applicable

text: MCF-7/shTRIM33 cells, hormone-deprived, rep 1


text: Medical College of Wisconsin

characteristic: INSDC center name

text: live

text: Human

text: not applicable

text: MCF-7/shTRIM33 HD rep 2

text: not applicable

text: MCF-7/shTRIM33 cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with vehicle for 24 hours. Replicate 2.

text: breast cancer

text: not applicable

text: not applicable

text: Homo sapiens

text: female

text: not applicable

text: MCF-7/shTRIM33 cells, hormone-deprived, rep 2


text: Medical College of Wisconsin

text: live

text: Human

text: not applicable

characteristic: age

text: MCF-7/shTRIM33 HD rep 3

text: not applicable

text: MCF-7/shTRIM33 cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with vehicle for 24 hours. Replicate 3.

text: breast cancer

text: not applicable

text: not applicable

text: Homo sapiens

text: female

text: not applicable

text: MCF-7/shTRIM33 cells, hormone-deprived, rep 3


text: Medical College of Wisconsin

text: live

text: Human

text: not applicable

text: MCF-7/shTRIM33 E2 rep 1

text: not applicable

text: MCF-7/shTRIM33 cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with 1 nM E2 for 24 hours. Replicate 1.

characteristic: description

text: breast cancer

text: not applicable

text: not applicable

text: Homo sapiens

text: female

text: not applicable

text: MCF-7/shTRIM33 cells, E2-treated, rep 1


text: Medical College of Wisconsin

text: live

text: Human

text: not applicable

text: Todd Miller, Medical College of Wisconsin, 8701 W Watertown Plank Rd, Milwaukee, WI 53226

text: MCF-7/shTRIM33 E2 rep 2

text: not applicable

text: MCF-7/shTRIM33 cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with 1 nM E2 for 24 hours. Replicate 2.

text: breast cancer

characteristic: disease

text: not applicable

text: not applicable

text: Homo sapiens

text: female

text: not applicable

text: MCF-7/shTRIM33 cells, E2-treated, rep 2


text: Medical College of Wisconsin

text: live

text: Human

text: not applicable

text: MCF-7/shTRIM33 E2 rep 3

text: not applicable

text: MCF-7/shTRIM33 cells were treated with hormone-depleted medium (phenol red-free DMEM + 10% dextran/charcoal-treated FBS) for 4 days, then treated with 1 nM E2 for 24 hours. Replicate 3.

text: breast cancer

text: not applicable

text: not applicable

text: Homo sapiens

text: female

characteristic: sex

text: not applicable

text: MCF-7/shTRIM33 cells, E2-treated, rep 3


text: University of Chicago

characteristic: INSDC first public

text: live

text: Generic

text: mESC

characteristic: cell line

text: stem cell

characteristic: cell type

text: missing

text: WT

characteristic: genotype

text: missing

text: ultrafast BS

characteristic: method

text: Mus musculus

text: mESC

text: 1 ng mESC genomic DNA treated with ultrafast BS replicate 2


text: University of Chicago

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: mESC

text: stem cell

text: missing

text: WT

text: missing

text: ultrafast BS

text: Mus musculus

text: mESC

text: 1 ng mESC genomic DNA treated with ultrafast BS replicate 1

characteristic: title


text: University of Chicago

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: mESC

text: stem cell

text: missing

text: WT

text: missing

text: ultrafast BS

text: Mus musculus

characteristic: organism

text: mESC

text: 10 ng mESC genomic DNA treated with ultrafast BS replicate 2


characteristic: External Id

text: University of Chicago

characteristic: INSDC center name

text: live

text: Generic

text: mESC

text: stem cell

text: missing

text: WT

text: missing

text: ultrafast BS

text: Mus musculus

text: mESC

text: 10 ng mESC genomic DNA treated with ultrafast BS replicate 1


text: University of Chicago

text: live

text: Generic

text: mESC

text: stem cell

text: missing

text: WT

text: missing

text: conventional BS

text: Mus musculus

text: mESC

text: 1 ng mESC genomic DNA treated with conventional BS replicate 2


text: University of Chicago

text: live

text: Generic

text: mESC

text: stem cell

text: missing

text: WT

text: missing

text: conventional BS

text: Mus musculus

text: mESC

text: 1 ng mESC genomic DNA treated with conventional BS replicate 1


text: University of Chicago

text: live

text: Generic

text: mESC

text: stem cell

text: missing

text: WT

text: missing

text: conventional BS

text: Mus musculus

text: mESC

text: 10 ng mESC genomic DNA treated with conventional BS replicate 2


text: University of Chicago

text: live

text: Generic

text: mESC

text: stem cell

text: missing

text: WT

text: missing

text: conventional BS

text: Mus musculus

text: mESC

text: 10 ng mESC genomic DNA treated with conventional BS replicate 1


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: Salmonella enterica

characteristic: strain

text: Salmonella enterica


characteristic: INSDC first public

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

characteristic: serovar

text: Escherichia coli


text: Wadsworth Center - NYS DOH

text: live

text: MLST- PubMLST

characteristic: MLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: bronchoalveolar lavage

text: Aeromonas hydrophila

text: whole organism

text: Microbe sample from Aeromonas hydrophila


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: Missing

text: missing

text: missing

text: missing

text: Shigella sonnei

text: missing

text: Shigella sonnei


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: Missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Newport

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Javiana

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Montevideo

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: enteritidis

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Mississippi

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: I 4:i:-

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Rubislaw

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Thompson

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: missing

text: Listeria monocytogenes


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: Sun Yat-sen University

text: live

text: Plant

characteristic: age

characteristic: cultivar

characteristic: ecotype

text: China

text: Oryza sativa

text: seedlings

characteristic: tissue

text: Plant sample from Oryza sativa


text: FDA CVM NARMS - Tennesse DOH

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: USA

text: Homo sapiens

text: urine

text: Acinetobacter baumannii

text: whole organism

text: not collected

text: Microbe sample from Acinetobacter baumannii


text: FDA CVM NARMS - Tennesse DOH

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: USA

text: Homo sapiens

text: urine

text: Pseudomonas aeruginosa

characteristic: organism

text: whole organism

text: not collected

text: Microbe sample from Pseudomonas aeruginosa

characteristic: title


characteristic: External Id

text: FDA CVM NARMS - Tennesse DOH

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

characteristic: host

characteristic: isolate

text: sputum

text: Pseudomonas aeruginosa

text: whole organism

text: not collected


text: FDA CVM NARMS - Tennesse DOH

characteristic: INSDC first public

text: live

characteristic: MLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: sputum

text: Acinetobacter baumannii

text: whole organism

text: not collected

characteristic: strain


text: FDA CVM NARMS - Tennesse DOH

text: live

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: Other Source

text: Klebsiella pneumoniae

text: whole organism

text: not collected

text: Microbe sample from Klebsiella pneumoniae


text: FDA CVM NARMS - Tennesse DOH

text: live

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: bone

text: Klebsiella pneumoniae

text: whole organism

text: not collected


text: FDA CVM NARMS - Tennesse DOH

text: live

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: Other Source

text: Escherichia coli

text: whole organism

text: not collected

text: Microbe sample from Escherichia coli


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

characteristic: serovar

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: Pondicherry University

text: live

text: Microbe, viral or environmental

text: India: Palk Bay

text: Coral

text: Enterococcus faecalis

text: Whole organisms

text: Microbe sample from Enterococcus faecalis


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter jejuni

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: PulseNet

text: Texas Department of State Health Services

text: missing

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter jejuni

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella flexneri

text: Shigella flexneri


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: PulseNet

text: missing

text: missing

text: human

text: Escherichia coli


Islets 1

text: Bangladesh Agricultural University

text: live

text: Human

characteristic: age

text: IIDP

text: Isolated human pncreatic islets (Donor 1)

characteristic: description

text: USA

text: Homo sapiens

text: female

characteristic: sex

text: Pancreatic islets

characteristic: tissue

text: Human sample from Homo sapiens


Islets 2

text: Bangladesh Agricultural University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Human

characteristic: NCBI submission model

text: IIDP

text: Isolated human pncreatic islets (Donor 2)

text: USA

text: Homo sapiens

text: female

text: Pancreatic islets

text: Human sample from Homo sapiens


text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

characteristic: organism

text: missing

text: Salmonella enterica

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Shigella sonnei

text: PulseNet

text: missing

text: missing

text: human

text: Shigella sonnei


text: Loyola University Chicago

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Alan Wolfe

text: Human bacterial culture

text: USA: Maywood, IL

text: Homo sapiens

text: Vaginal Swab

text: Vagina

text: 41.85911095 N 87.83527146 W

text: Schaalia turicensis

text: cell culture

characteristic: strain

text: Microbe sample from Schaalia turicensis


text: Loyola University Chicago

text: live

text: Microbe, viral or environmental

text: Alan Wolfe

text: Patient diagnosed with Overactive Bladder

characteristic: description

text: Human bacterial culture

text: USA: Maywood, IL

text: Homo sapiens

text: Catherized urine

text: Bladder

text: 41.85911095 N 87.83527146 W

text: Actinobaculum massiliense

text: cell culture

text: Microbe sample from Actinobaculum massiliense


text: Loyola University Chicago

text: live

text: Microbe, viral or environmental

text: Alan Wolfe

text: Human bacterial culture

text: USA: Maywood, IL

text: Homo sapiens

text: Catherized urine

text: Bladder

text: 41.85911095 N 87.83527146 W

text: Corynebacterium sp. UMB2355A

text: cell culture

text: Microbe sample from Corynebacterium sp. UMB2355A


text: Loyola University Chicago

text: live

text: Microbe, viral or environmental

text: Alan Wolfe

text: Human bacterial culture

text: USA: Maywood, IL

text: Homo sapiens

text: Catherized urine

text: Bladder

text: 41.85911095 N 87.83527146 W

text: Facklamia hominis

text: cell culture

text: Microbe sample from Facklamia hominis


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: missing

characteristic: serovar

text: Listeria monocytogenes


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: stool

text: missing

text: Campylobacter upsaliensis

text: missing

text: Campylobacter upsaliensis


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter jejuni

text: missing

text: Camploybacter jejuni


text: GPHL

text: live

text: SARS-CoV-2: clinical or host-associated

text: GA Department of Public Health Laboratory

text: USA: Georgia

text: Homo sapiens

text: human

text: Baseline Surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: GPHL

text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: Georgia

text: Homo sapiens

text: human

text: Severe acute respiratory syndrome coronavirus 2

text: Baseline Surveillance


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter coli

text: missing

text: Campylobacter coli


text: University of Rochester

text: live

text: Generic

characteristic: cell line

text: Ink4a primary tumor #35

characteristic: cell type

text: missing

text: missing

text: Mus musculus

text: pancreas tumor

text: FVB

text: pancreas tumor

characteristic: tissue


text: University of Rochester

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Ink4a liver metastasis #25

text: missing

text: missing

text: Mus musculus

text: pancreas tumor

text: FVB

text: pancreas tumor


text: University of Rochester

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Ink4a primary tumor #25

text: missing

text: missing

text: Mus musculus

text: pancreas tumor

text: FVB

text: pancreas tumor


characteristic: External Id

text: University of Rochester

text: live

text: Generic

text: Ink4a liver metastasis #72

text: missing

text: missing

text: Mus musculus

characteristic: organism

text: pancreas tumor

text: FVB

text: pancreas tumor

characteristic: title


text: University of Rochester

characteristic: INSDC center name

text: live

text: Generic

text: Ink4a primary tumor #72

text: missing

text: missing

text: Mus musculus

text: pancreas tumor

text: FVB

text: pancreas tumor


text: University of Rochester

characteristic: INSDC first public

text: live

text: Generic

text: Ink4a liver metastasis #38

text: missing

text: missing

text: Mus musculus

text: pancreas tumor

text: FVB

text: pancreas tumor


text: University of Rochester

text: live

text: Generic

text: Ink4a primary tumor #38

text: missing

text: missing

text: Mus musculus

text: pancreas tumor

text: FVB

characteristic: strain

text: pancreas tumor


text: University of Rochester

text: live

text: Generic

text: Ink4a liver metastasis #36

text: missing

text: missing

text: Mus musculus

text: pancreas tumor

text: FVB

text: pancreas tumor


text: University of Rochester

text: live

text: Generic

text: Ink4a primary tumor #36

text: missing

text: missing

text: Mus musculus

text: pancreas tumor

text: FVB

text: pancreas tumor


text: University of Rochester

text: live

text: Generic

text: Ink4a liver metastasis #35

text: missing

text: missing

text: Mus musculus

text: pancreas tumor

text: FVB

text: pancreas tumor


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: Salmonella enterica

text: Salmonella enterica


text: live

text: Pathogen.env

text: NM

text: USA:NM

text: turkey

text: missing

text: Salmonella enterica

text: Salmonella enterica


text: live

text: Pathogen.env

text: NM

text: USA:NM

text: chicken

text: missing

text: Salmonella enterica

text: Salmonella enterica


text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter jejuni

text: missing

text: South Carolina Department of Health and Environmental Control

text: jejuni

characteristic: serovar

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella sonnei

text: missing

text: Shigella sonnei


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: PulseNet

text: missing

text: missing

text: human

text: Salmonella enterica


Islets 3

text: Bangladesh Agricultural University

text: live

text: Human

characteristic: age

text: IIDP

text: Isolated human pancreatic islets (Donor 3)

characteristic: description

text: USA

text: Homo sapiens

text: female

characteristic: sex

text: Pancreatic islets

text: Human sample from Homo sapiens


text: PulseNet Next Generation Subtyping Methods Unit

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: missing

text: Listeria monocytogenes


text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: NM

text: USA:NM

text: chicken

text: missing

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: live

text: Pathogen.env

text: NM

text: USA:NM

text: turkey

text: missing

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: INSDC center name

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Typhimurium

text: Salmonella enterica

characteristic: title


characteristic: INSDC first public

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Infantis

characteristic: strain

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Bareilly

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Sandiego

characteristic: serovar

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: muenchen

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Virchow

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.env

text: OR

text: missing

text: missing

text: missing

text: chicken breast

text: missing

text: Campylobacter coli

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: CA

text: USA

text: missing

text: missing

text: stool

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella flexneri

text: missing

text: Shigella flexneri


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: enteritidis

text: Salmonella enterica


text: Tansey lab, Neuroscience, University of Florida

text: live

text: Generic

text: male

characteristic: Sex

text: 5-6 months old

characteristic: age

characteristic: batch

text: CD45+ cells

characteristic: cell type

text: missing

text: Inhibitors

characteristic: ex vivo_treatment

text: missing

text: LPS

characteristic: in vivo_treatment

text: Mus musculus

text: brain

text: brain

characteristic: tissue


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: male

text: 5-6 months old

text: CD45+ cells

text: missing

text: Inhibitors

text: missing

text: Saline

text: Mus musculus

text: brain

text: brain


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: male

text: 5-6 months old

text: CD45+ cells

text: missing

text: DMSO

text: missing

text: LPS

text: Mus musculus

characteristic: organism

text: brain

characteristic: strain

text: brain

characteristic: title


text: live

text: Generic

text: male

characteristic: Sex

text: 5-6 months old

characteristic: age

characteristic: batch

text: CD45+ cells

text: missing

text: DMSO

text: missing

text: Saline

text: Mus musculus

text: brain

text: brain


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

characteristic: serovar

text: Salmonella enterica


text: FLDOH

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: Florida Bureau of Public Health Laboratories

text: USA: Florida

text: Homo sapiens

text: Health care-associated infection

text: clinical

text: Homo Sapiens clinical

text: Escherichia coli

text: Pathogen: clinical or host-associated sample from Escherichia coli


text: FLDOH

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: USA: Florida

text: Homo sapiens

text: Health care-associated infection

text: clinical

text: Homo Sapiens clinical

text: Klebsiella michiganensis

text: Pathogen: clinical or host-associated sample from Klebsiella michiganensis


text: FLDOH

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: USA: Florida

text: Homo sapiens

text: Health care-associated infection

text: clinical

text: Homo Sapiens clinical

text: Klebsiella pneumoniae

text: Pathogen: clinical or host-associated sample from Klebsiella pneumoniae


characteristic: External Id

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Needs further review

text: Salmonella enterica


characteristic: INSDC first public

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

characteristic: organism

text: Saintpaul

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Hvittingfoss

characteristic: strain

text: Salmonella enterica

characteristic: title


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Paratyphi B var. L(+) tartrate+

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Braenderup

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Richmond

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: enteritidis

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Infantis

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Typhimurium

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Weltevreden

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Senftenberg

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Chester

text: Salmonella enterica


Islet Graft (PBS) 1

text: Bangladesh Agricultural University

text: live

text: Human

characteristic: age

text: Sanford Research

text: Human islets (donor 1) engrafted in mouse kidney capsule (Control Mouse)

characteristic: description

text: USA

text: Homo sapiens

text: female

characteristic: sex

text: Human islets engrafted in mouse kidney capsule

characteristic: tissue

text: Human islets graft from humanized control mouse


Islet Graft (PBS) 2

text: Bangladesh Agricultural University

text: live

text: Human

text: Sanford Research

text: Human islets (donor 2) engrafted in mouse kidney capsule (Control Mouse)

text: USA

characteristic: isolate

text: Homo sapiens

text: female


characteristic: INSDC last update

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

characteristic: serovar

text: Escherichia coli


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella sonnei

text: Shigella sonnei


Islet Graft (PBS) 3

characteristic: External Id

text: Bangladesh Agricultural University

text: live

text: Human

characteristic: NCBI submission package

characteristic: SRA accession

text: Sanford Research

text: Human islets (donor 3) engrafted in mouse kidney capsule (Control Mouse)

text: USA

text: Homo sapiens

text: female


Islet Graft (ALT) 1

text: Bangladesh Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Human

text: Sanford Research

text: Human islets (donor 1) engrafted in mouse kidney capsule (diabetic Mouse)

text: USA

text: Homo sapiens

characteristic: organism

text: female

text: Human islets graft from humanized diabetic mouse


Islet Graft (ALT) 2

text: Bangladesh Agricultural University

text: live

text: Human

characteristic: age

text: Sanford Research

text: Human islets (donor 2) engrafted in mouse kidney capsule (diabetic Mouse)

text: USA

text: Homo sapiens

text: female

characteristic: title


text: University of Texas Medical Branch

text: live

characteristic: Line

text: Ked

characteristic: Location

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

characteristic: Replicate

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: Gnotobiotic larval rearing

text: Not collected

text: Ae. aegypti larvae

text: Senegal

text: Aedes aegypti

text: Not collected

text: mosquito metagenome

text: MIMARKS Survey related sample from mosquito metagenome


text: University of Texas Medical Branch

characteristic: INSDC last update

text: live

text: Thi

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Gnotobiotic larval rearing

text: Not collected

text: Ae. aegypti larvae

text: Senegal

text: Aedes aegypti

characteristic: host

text: Not collected

text: mosquito metagenome


text: University of Texas Medical Branch

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Aedes aegypti larvae

text: Not collected

text: Ae. aegypti larvae

text: Senegal

text: Aedes aegypti

text: Not collected

text: mosquito metagenome


name: Bacillus pumilus strain. EB68 chromosome, complete genome

text: College of Medicine-Jacksonville, University of Florida,

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Maryam Beiranvand

text: Iran: Ahvaz

text: Bacillus

text: Bacillus pumilus

text: whole organism

characteristic: strain

text: Microbe sample from Bacillus pumilus


Islet Graft (ALT) 3

characteristic: External Id

text: Bangladesh Agricultural University

text: live

text: Human

characteristic: NCBI submission model

text: Sanford Research

text: Human islets (donor 3) engrafted in mouse kidney capsule (diabetic Mouse)

text: USA

characteristic: isolate

text: Homo sapiens

text: female

characteristic: sex

characteristic: tissue


text: PulseNet Next Generation Subtyping Methods Unit

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

characteristic: organism

text: missing

text: missing

text: missing

characteristic: serovar

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli

characteristic: title


characteristic: INSDC last update

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella flexneri

text: missing

text: Shigella flexneri


text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

characteristic: MLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

characteristic: host

text: tracheal swab

text: Acinetobacter baumannii

text: whole organism

text: Microbe sample from Acinetobacter baumannii


text: Wadsworth Center - NYS DOH

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MLST- PubMLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: urine

text: Proteus mirabilis

text: whole organism

text: Microbe sample from Proteus mirabilis


characteristic: External Id

text: Wadsworth Center - NYS DOH

text: live

text: MLST- PubMLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: urine

text: Morganella morganii

text: whole organism

characteristic: strain

text: Microbe sample from Morganella morganii


text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: USA

text: Homo sapiens

characteristic: isolate

text: sputum

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST45 PubMLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: urine

text: Klebsiella pneumoniae

text: whole organism

text: Microbe sample from Klebsiella pneumoniae


text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: wound

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST463 PubMLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: sputum

text: Pseudomonas aeruginosa

text: whole organism

text: Microbe sample from Pseudomonas aeruginosa


text: Wadsworth Center - NYS DOH

text: live

text: MLST405 PubMLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: urine

text: Escherichia coli

text: whole organism

text: Microbe sample from Escherichia coli


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Surface

characteristic: depth

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: Sterivex filters were extracted using the Qiagen Powersterivex kit following the manufacturers instructions. DNA was eluted with the addition of 50ul elution buffer.

text: metagenome

text: FWD(1391):5_GTACACACCGCCCGTC, REV(EukBr):5_TGATCCTTCTGCAGGTTCACCTAC

text: Illumina MiSeq with v3 chemistry generating paired end 300 bp reads

text: 18S SSU rRNA

text: RB1903_Precruise_ctl_Darya_18S_1L_Sterivex


text: USGS Eastern Ecological Science Center

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMARKS.survey

text: Sedna

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: metagenome

text: 18S SSU rRNA

text: RB1903_Precruise_ctl_Sedna_18S_1L_Sterivex


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

characteristic: NCBI submission package

text: Darya

characteristic: SRA accession

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: Prefilters were extracted using the Qiagen PowerSterivex kit with some modifications. One quarter of the prefilter was lysed in a 5 mL screwcap tube, which mimicked a Sterivex capsule. The rest of the manufacturues protocol was followed, and DNA was eluted with the addition of 50 ul elution buffer.

text: metagenome

text: 18S SSU rRNA

text: RB1903_Precruise_ctl_Darya_18S_10L_Prefilter


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: metagenome

characteristic: organism

text: 18S SSU rRNA

text: RB1903_Precruise_ctl_Sedna_18S_10L_Prefilter


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: metagenome

text: FWD(mICO1intF):5_GGWACWGGWTGAACWGTWTAYCCYCC, REV(HCO2198):5_TAAACTTCAGGGTGACCAAAAAATCA

text: mitochondrial cox1

text: RB1903_Precruise_ctl_Darya_cox1_1L_Sterivex

characteristic: title


text: USGS Eastern Ecological Science Center

characteristic: INSDC last update

text: live

text: MIMARKS.survey

text: Sedna

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: metagenome

text: mitochondrial cox1

text: RB1903_Precruise_ctl_Sedna_cox1_1L_Sterivex


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: metagenome

text: mitochondrial cox1

text: RB1903_Precruise_ctl_Darya_cox1_10L_Prefilter


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: metagenome

text: mitochondrial cox1

text: RB1903_Precruise_ctl_Sedna_cox1_10L_Prefilter


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.88915 N 77.36567 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.88915 N 77.36567 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.88915 N 77.36567 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.88915 N 77.36567 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.88915 N 77.36567 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.88915 N 77.36567 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.88915 N 77.36567 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.88915 N 77.36567 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.76121 N 79.19059 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.76121 N 79.19059 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.76121 N 79.19059 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.76121 N 79.19059 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.28987 N 77.23403 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.28987 N 77.23403 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.28987 N 77.23403 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.28987 N 77.23403 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.28987 N 77.23403 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 31.28987 N 77.23403 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.28987 N 77.23403 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 31.28987 N 77.23403 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 35.67351 N 74.79731 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 35.67351 N 74.79731 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 35.67351 N 74.79731 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 35.67351 N 74.79731 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 35.67351 N 74.79731 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 35.67351 N 74.79731 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 35.67351 N 74.79731 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 35.67351 N 74.79731 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 35.93482 N 74.81771 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 35.93482 N 74.81771 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 35.93482 N 74.81771 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 35.93482 N 74.81771 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 35.93482 N 74.81771 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 35.93482 N 74.81771 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 35.93482 N 74.81771 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 35.93482 N 74.81771 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 33.91893 N 75.83331 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 33.91893 N 75.83331 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 33.91893 N 75.83331 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 33.91893 N 75.83331 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 33.91893 N 75.83331 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 33.91893 N 75.83331 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 33.91893 N 75.83331 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic epipelagic zone biome

text: oceanic epipelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 33.91893 N 75.83331 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 32.49361 N 76.19091 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 32.49361 N 76.19091 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 32.49361 N 76.19091 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 32.49361 N 76.19091 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 32.49361 N 76.19091 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 32.49361 N 76.19091 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 32.49361 N 76.19091 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 32.49361 N 76.19091 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 32.97398 N 75.91420 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 32.97398 N 75.91420 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 32.97398 N 75.91420 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 32.97398 N 75.91420 W

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 32.97398 N 75.91420 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: 32.97398 N 75.91420 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 32.97398 N 75.91420 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: oceanic bathypelagic zone biome

text: oceanic bathypelagic zone biome

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: 32.97398 N 75.91420 W

text: metagenome

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: metagenome

text: 18S SSU rRNA

text: RB1903_Postcruise_ctl_Darya_18S_1L_Sterivex


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: metagenome

text: 18S SSU rRNA

text: RB1903_Postcruise_ctl_Sedna_18S_1L_Sterivex


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: metagenome

text: 18S SSU rRNA

text: RB1903_Postcruise_ctl_Darya_18S_10L_Prefilter


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: metagenome

text: 18S SSU rRNA

text: RB1903_Postcruise_ctl_Sedna_18S_10L_Prefilter


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: Sterivex filters were extracted using the Qiagen Powersterivex kit following the manufacturers instructions. DNA was eluted with the addition of 50ul elution buffer.

text: metagenome

text: mitochondrial cox1

text: RB1903_Postcruise_ctl_Darya_cox1_1L_Sterivex


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: metagenome

text: Illumina MiSeq with v3 chemistry generating paired end 300 bp reads

text: mitochondrial cox1

text: RB1903_Postcruise_ctl_Sedna_cox1_1L_Sterivex


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Darya

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: metagenome

text: mitochondrial cox1

text: RB1903_Postcruise_ctl_Darya_cox1_10L_Prefilter


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Sedna

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: Prefilters were extracted using the Qiagen PowerSterivex kit with some modifications. One quarter of the prefilter was lysed in a 5 mL screwcap tube, which mimicked a Sterivex capsule. The rest of the manufacturues protocol was followed, and DNA was eluted with the addition of 50 ul elution buffer.

text: metagenome

text: mitochondrial cox1

text: RB1903_Postcruise_ctl_Sedna_cox1_10L_Prefilter


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: metagenome

text: FWD(1391):5_GTACACACCGCCCGTC, REV(EukBr):5_TGATCCTTCTGCAGGTTCACCTAC

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Sterivex

text: USA: Atlantic Coast

text: metagenome

text: FWD(mICO1intF):5_GGWACWGGWTGAACWGTWTAYCCYCC, REV(HCO2198):5_TAAACTTCAGGGTGACCAAAAAATCA

text: mitochondrial cox1


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: metagenome

text: 18S SSU rRNA


text: USGS Eastern Ecological Science Center

text: live

text: MIMARKS.survey

text: Surface

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: laboratory

text: laboratory

text: sea water

text: Prefilter

text: USA: Atlantic Coast

text: metagenome

text: mitochondrial cox1


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: missing

text: missing

characteristic: serovar

text: human

text: Escherichia coli


text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: South Carolina Department of Health and Environmental Control

text: Saintpaul

text: missing

text: Salmonella enterica


characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Mississippi

text: missing

text: Salmonella enterica


text: live

characteristic: INSDC status

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Newport

text: missing

text: Salmonella enterica


characteristic: External Id

text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Javiana

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Braenderup

text: missing

characteristic: strain

text: Salmonella enterica


text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Stanley

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Campylobacter jejuni

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Gaminara

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: enteritidis

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: SC

text: USA:SC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Montevideo

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: SC

text: USA:NC

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Newport

text: missing

text: Salmonella enterica


text: Massachusetts State Public Health Lab

text: live

text: Pathogen.cl

text: missing

text: USA

text: Homo sapiens

text: missing

text: urine

text: missing

text: Escherichia coli

text: Pathogen: clinical or host-associated sample from Escherichia coli


text: Massachusetts State Public Health Lab

text: live

text: Pathogen.cl

text: missing

text: USA

text: Homo sapiens

text: missing

text: urine

text: missing

text: Enterobacter cloacae

text: Pathogen: clinical or host-associated sample from Enterobacter cloacae


text: Massachusetts State Public Health Lab

text: live

text: Pathogen.cl

text: missing

text: USA

text: Homo sapiens

text: missing

text: sputum

text: missing

text: Pluralibacter gergoviae

text: Pathogen: clinical or host-associated sample from Pluralibacter gergoviae


text: Massachusetts State Public Health Lab

text: live

text: Pathogen.cl

text: missing

text: USA

text: Homo sapiens

text: missing

text: urine

text: missing

text: Klebsiella pneumoniae

text: Pathogen: clinical or host-associated sample from Klebsiella pneumoniae


text: Massachusetts State Public Health Lab

text: live

text: Pathogen.cl

text: missing

text: USA

text: Homo sapiens

text: missing

text: rectal swab

text: missing

text: Klebsiella pneumoniae


text: Massachusetts State Public Health Lab

text: live

text: Pathogen.cl

text: missing

text: USA

text: Homo sapiens

text: missing

text: rectal swab

text: missing

text: Enterobacter hormaechei

text: Pathogen: clinical or host-associated sample from Enterobacter hormaechei


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella sonnei

text: missing

text: Shigella sonnei


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella flexneri

text: missing

text: Shigella flexneri


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: missing

text: human

text: Escherichia coli


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: missing

text: human

text: Escherichia coli


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: missing

text: missing

text: Escherichia coli


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Rissen

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Typhimurium

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Corvallis

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Oranienburg

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: enteritidis

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Typhimurium

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Newport

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella flexneri

text: missing

text: Shigella flexneri


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Uganda

text: Salmonella enterica


text: Icahn School of Medicine at Mount Sinai

text: live

text: Generic

text: mESC

characteristic: cell type

text: missing

characteristic: genotype

text: missing

text: Mus musculus

text: total

characteristic: rna fraction

text: mESC

characteristic: timepoint


text: Icahn School of Medicine at Mount Sinai

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: mESC

text: missing

text: missing

text: Mus musculus

text: labeled

text: mESC


text: Icahn School of Medicine at Mount Sinai

text: live

text: Generic

characteristic: SRA accession

text: mESC

text: missing

text: WT

text: missing

text: Mus musculus

characteristic: organism

text: total

text: mESC

characteristic: title


text: Icahn School of Medicine at Mount Sinai

characteristic: INSDC last update

text: live

text: Generic

text: mESC

text: missing

text: WT

text: missing

text: Mus musculus

text: labeled

text: mESC


name: Methanobrevibacter smithii DSM861 small RNA

text: University of Alberta

text: live

text: Microbe, viral or environmental

text: DSM861 small RNA library

characteristic: description

text: Germany: Braunschweig-Sd

text: Homo sapiens

characteristic: host

text: Human feces

text: 52.21152 N 10.53049 E

text: Methanobrevibacter smithii ATCC 35061

text: Pure culture purchased from supplier

text: Total RNA extraction; small RNA library sequencing

text: cell culture

text: DSM861 cell culture

text: DSM 861

text: type strain of Methanobrevibacter smithii

characteristic: type-material


name: Methanosphaera stadtmanae DSM3091 small RNA

characteristic: External Id

text: University of Alberta

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: DSM3091 small RNA library

text: Germany: Braunschweig-Sd

text: Homo sapiens

text: Human feces

text: 52.21152 N 10.53049 E

text: Methanosphaera stadtmanae DSM 3091

text: Pure culture purchased from supplier

text: cell culture

text: DSM3091 cell culture

text: DSM 3091

characteristic: strain

text: type strain of Methanosphaera stadtmanae


name: Methanobrevibacter ruminantium M1 small RNA

text: University of Alberta

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: M1 small RNA library

text: Canada: Lethbridge

text: Bos taurus

text: Bovine rumen

text: 49.69932758 N 112.76197135 W

text: Methanobrevibacter ruminantium M1

text: Pure culture purchased from supplier

text: cell culture

text: M1 cell culture

text: type strain of Methanobrevibacter ruminantium


name: Methanobrevibacter boviskoreani JH1 small RNA

text: University of Alberta

text: live

text: Microbe, viral or environmental

text: JH1 small RNA library

text: Korea: Daejeon

text: Bos taurus

text: Bovine rumen

text: 36.38748440 N 127.45955683 E

text: Methanobrevibacter boviskoreani JH1

text: Pure culture purchased from supplier

text: cell culture

text: JH1 cell culture

text: type strain of Methanobrevibacter boviskoreani


characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Mississippi

characteristic: serovar

text: Salmonella enterica


characteristic: INSDC center name

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: Escherichia coli


characteristic: INSDC first public

text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: The University of Tennessee, Knoxville

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: 1:31:00 PM

characteristic: Sample Collection Time

text: USA: Oak Ridge

text: missing

text: soil

text: Missing

text: soil metagenome

text: Metagenome or environmental sample from soil metagenome