characteristic: External Id

text: Southwest University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: Grassland Microbiology Laboratory

text: not collected

text: not collected

text: Vicia faba L.

characteristic: isolate

text: not collected

text: 29.41 N 105.44 E

text: Fusarium oxysporum

text: not collected

text: not collected

text: biological replicate 3

text: not collected

text: not collected

text: not collected

text: DW

text: not collected

text: not collected


status: PUBLIC

text: Southwest University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Grassland Microbiology Laboratory

tag: attribute

text: not collected

text: not collected

text: Mycelium of Fusarium oxysporum at the logarithmic growth stage after 24h treatment with the addition of the antifungal peptide P852

characteristic: description

text: not collected

characteristic: genotype

text: China:Rongchang Forage Germplasm Fields, Southwest University,

text: Vicia faba L.

text: not collected

text: not collected

text: Fusarium oxysporum

characteristic: organism

text: not collected

text: not collected

characteristic: pathotype

text: biological replicate 1

characteristic: replicate

text: not collected

characteristic: serotype

text: not collected

characteristic: serovar

text: not collected

text: DW

characteristic: strain

text: not collected

characteristic: subgroup

text: not collected

characteristic: subtype

text: Pathogen: environmental/food/other sample from Fusarium oxysporum

characteristic: title


characteristic: External Id

text: Southwest University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: Grassland Microbiology Laboratory

text: not collected

text: not collected

text: Mycelium of Fusarium oxysporum at the logarithmic growth stage after 24h treatment with the addition of the antifungal peptide P853

text: not collected

text: Vicia faba L.

characteristic: isolate

text: not collected

text: not collected

text: Fusarium oxysporum

text: not collected

text: not collected

text: biological replicate 2

text: not collected

text: not collected

text: not collected

text: DW

text: not collected

text: not collected


text: Southwest University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Grassland Microbiology Laboratory

text: not collected

text: not collected

text: Mycelium of Fusarium oxysporum at the logarithmic growth stage after 24h treatment with the addition of the antifungal peptide P854

text: not collected

text: Vicia faba L.

text: not collected

text: not collected

text: Fusarium oxysporum

text: not collected

text: not collected

text: biological replicate 3

text: not collected

text: not collected

text: not collected

text: DW

text: not collected

text: not collected


text: UNISA

text: live

text: Metagenome or environmental

text: Wetland Sediments

characteristic: description

text: South Africa: Gauteng

text: missing

text: wetland metagenome

characteristic: organism

text: aerobe


text: UNISA

text: live

text: Metagenome or environmental

text: water from a wetland

text: South Africa: Gauteng

text: missing

text: wetland metagenome

text: aerobe


text: fenthion

characteristic: Chemical

characteristic: Concentration (mg/L)

text: U.S. Environmental Protection Agency

text: live

text: Model organism or animal

text: five days post fertilization

characteristic: age

characteristic: biological replicate

text: U.S. EPA Great Lakes Toxicology and Ecology Division, 6201 Congdon Boulevard, Duluth, MN 55804

text: not applicable

characteristic: breed

text: not collected

text: not applicable

characteristic: cultivar

text: larvae

text: not applicable

characteristic: ecotype

text: USA: Duluth, MN

text: not applicable

text: Pimephales promelas

text: not applicable

characteristic: sex

text: not applicable

text: whole larvae

characteristic: tissue

text: Model organism or animal sample from Pimephales promelas


text: methidathion control (Lake Superior water with 0.25% dimethyl sulfoxide)

characteristic: External Id

text: U.S. Environmental Protection Agency

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Model organism or animal

text: five days post fertilization

text: not applicable

text: not collected

text: not applicable

text: larvae

text: not applicable

text: USA: Duluth, MN

text: not applicable

characteristic: isolate

text: Pimephales promelas

text: not applicable

text: not applicable

characteristic: strain

text: whole larvae

characteristic: title


text: parathion control (Lake Superior water with 0.25% dimethyl sulfoxide)

text: U.S. Environmental Protection Agency

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: five days post fertilization

text: not applicable

text: not collected

text: not applicable

text: larvae

text: not applicable

text: USA: Duluth, MN

text: not applicable

text: Pimephales promelas

characteristic: organism

text: not applicable

text: not applicable

text: whole larvae


text: fenthion control (Lake Superior water with 0.25% dimethyl sulfoxide)

characteristic: Chemical

characteristic: Concentration (mg/L)

text: U.S. Environmental Protection Agency

text: live

text: Model organism or animal

text: five days post fertilization

characteristic: age

characteristic: biological replicate

text: not applicable

characteristic: breed

text: not collected

text: not applicable

characteristic: cultivar

text: larvae

text: not applicable

text: USA: Duluth, MN

text: not applicable

text: Pimephales promelas

text: not applicable

text: not applicable

text: whole larvae


text: methidathion

characteristic: External Id

text: U.S. Environmental Protection Agency

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: five days post fertilization

text: not applicable

text: not collected

text: not applicable

text: larvae

text: not applicable

characteristic: ecotype

text: USA: Duluth, MN

text: not applicable

text: Pimephales promelas

text: not applicable

characteristic: sex

text: not applicable

text: whole larvae

characteristic: tissue


text: parathion

text: U.S. Environmental Protection Agency

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

text: five days post fertilization

text: not applicable

text: not collected

text: not applicable

text: larvae

text: not applicable

text: USA: Duluth, MN

text: not applicable

characteristic: isolate

text: Pimephales promelas

text: not applicable

text: not applicable

characteristic: strain

text: whole larvae

characteristic: title


text: copper sulfate

characteristic: Chemical

characteristic: Concentration (mg/L)

text: U.S. Environmental Protection Agency

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: five days post fertilization

text: not applicable

text: not collected

text: not applicable

text: larvae

text: not applicable

text: USA: Duluth, MN

text: not applicable

text: Pimephales promelas

characteristic: organism

text: not applicable

text: not applicable

text: whole larvae


characteristic: External Id

text: Temple University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Aggressive periodontitis

characteristic: Periodontal Health status

text: Morocco: Casablanca

text: Homo sapiens

characteristic: host

text: Subgingival plaque

text: 33.5414 N 7.59972 W

text: metagenome

text: Metagenome or environmental sample from metagenome


text: Temple University

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Healthy control

text: Morocco: Casablanca

text: Homo sapiens

text: Subgingival plaque

text: 33.5414 N 7.59972 W

text: metagenome


text: PulseNet Next Generation Subtyping Methods Unit

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter jejuni

text: missing

characteristic: serovar

text: Campylobacter jejuni


text: Lebanese American University

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Lebanon: Beirut

text: Felis catus

text: fecal sample

text: Escherichia coli

text: Single Cell Bacterium

text: Microbe sample from Escherichia coli


characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: MD

text: missing

text: missing

characteristic: isolate

text: missing

text: chicken gizzard

text: missing

text: Campylobacter jejuni

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter coli

text: missing

characteristic: strain

text: Campylobacter coli

characteristic: title


text: Anhui University of Agriculture

text: live

text: Plant

text: 3 months

characteristic: age

text: Heading stage

text: China:Hainan

text: A

text: Oryza sativa

text: Leaf

characteristic: tissue

text: Plant sample from Oryza sativa


text: Anhui University of Agriculture

text: live

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 3 months

text: Heading stage

text: China:Hainan

text: B

text: Oryza sativa

text: Leaf

text: Plant sample from Oryza sativa


text: Anhui University of Agriculture

text: live

text: Plant

characteristic: SRA accession

text: 3 months

text: Heading stage

text: China:Hainan

text: C

text: Oryza sativa

characteristic: organism

text: Leaf

text: Plant sample from Oryza sativa


characteristic: External Id

text: Anhui University of Agriculture

characteristic: INSDC center name

text: live

text: Plant

text: 3 months

text: Heading stage

text: China:Hainan

text: D

text: Oryza sativa

text: Leaf

text: Plant sample from Oryza sativa


text: Anhui University of Agriculture

text: live

text: Plant

text: 3 months

text: Heading stage

text: China:Hainan

text: E

text: Oryza sativa

text: Leaf

text: Plant sample from Oryza sativa


text: Anhui University of Agriculture

text: live

text: Plant

text: 3 months

text: Heading stage

text: China:Hainan

text: F

text: Oryza sativa

text: Leaf

text: Plant sample from Oryza sativa


text: Anhui University of Agriculture

text: live

text: Plant

text: 3 months

text: Heading stage

text: China:Hangzhou

text: G

text: Oryza sativa

text: Leaf

text: Plant sample from Oryza sativa


text: Anhui University of Agriculture

text: live

text: Plant

text: 3 months

text: Heading stage

text: China:Hangzhou

text: H

text: Oryza sativa

text: Leaf

text: Plant sample from Oryza sativa


text: Anhui University of Agriculture

text: live

text: Plant

text: 3 months

text: Heading stage

text: China:Hangzhou

text: I

text: Oryza sativa

text: Leaf

text: Plant sample from Oryza sativa


Kleb PN-23

text: CSIR-NCL

text: live

text: Microbe, viral or environmental

text: India: Pune

text: environmental

text: Klebsiella michiganensis

text: pure culture

text: Microbe sample from Klebsiella michiganensis


text: National Center for Biotechnology

text: live

text: Plant

text: 1 year

text: Adult plant

text: Kazakhstan: Ridder

text: Plant's leaf

text: Juniperus pseudosabina

text: Plant's tissue

text: Plant sample from Juniperus pseudosabina


text: National Center for Biotechnology

text: live

text: Plant

text: 2 years

text: Adult plant

text: Kazakhstan: Turkistanskiy region, Tolebiyskiy district

text: Plant's leaf

text: Vitis vinifera

text: Plant's tissue

text: Plant sample from Vitis vinifera


text: National Center for Biotechnology

text: live

text: Plant

text: 2 years

text: Adult plant

text: Kazakhstan: Canyon Aksu

text: Plant's leaf

text: Juniperus seravschanica

text: Plant's tissue

text: Plant sample from Juniperus seravschanica


text: National Center for Biotechnology

text: live

text: Plant

text: 2 years

text: Adult plant

text: Kazakhstan: Akmola region, Zhaltir

text: Plant's leaf

text: Cousinia alata

text: Plant's tissue

text: Plant sample from Cousinia alata


text: live

text: Pathogen.env

text: MD

text: missing

text: missing

text: missing

text: ground turkey

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.env

text: MD

text: missing

text: missing

text: missing

text: chicken liver

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.env

text: MD

text: missing

text: missing

text: missing

text: Ground Beef

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.env

text: MD

text: missing

text: missing

text: missing

text: chicken heart

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella sonnei

text: missing

text: Shigella sonnei


characteristic: INSDC first public

text: live

text: Pathogen.env

text: MD

text: missing

text: missing

text: missing

text: ground turkey

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


characteristic: INSDC last update

text: live

text: Pathogen.env

text: MD

text: missing

text: missing

text: missing

text: chicken liver

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


tag: Namespace:Universidade Estadual de Londrina

text: mothur

text: live

text: Light

characteristic: description

text: Light

text: organic material

text: Intestinal contents (substance)

text: Intestinal contents (substance)

text: Brazil: Londrina, Parana

text: Gallus gallus

text: 23.18 S 51.09 W

text: chicken gut metagenome

text: chicken gut metagenome


text: mothur

text: live

characteristic: INSDC status

text: Light

text: Light

text: organic material

text: Intestinal contents (substance)

text: Intestinal contents (substance)

text: Brazil: Londrina, Parana

text: Gallus gallus

text: 23.18 S 51.09 W

text: chicken gut metagenome

text: chicken gut metagenome


text: mothur

characteristic: INSDC secondary accession

text: live

text: Heavy

text: Heavy

text: organic material

text: Intestinal contents (substance)

text: Intestinal contents (substance)

text: Brazil: Londrina, Parana

text: Gallus gallus

text: 23.18 S 51.09 W

text: chicken gut metagenome

text: chicken gut metagenome


text: mothur

text: live

text: Heavy

text: Heavy

text: organic material

text: Intestinal contents (substance)

text: Intestinal contents (substance)

text: Brazil: Londrina, Parana

text: Gallus gallus

text: 23.18 S 51.09 W

text: chicken gut metagenome

text: chicken gut metagenome


text: mothur

text: live

text: organic material

text: Intestinal contents (substance)

text: Intestinal contents (substance)

text: Brazil: Londrina, Parana

text: Gallus gallus

text: 23.18 S 51.09 W

text: chicken gut metagenome

text: chicken gut metagenome


text: mothur

text: live

text: organic material

text: Intestinal contents (substance)

text: Intestinal contents (substance)

text: Brazil: Londrina, Parana

text: Gallus gallus

text: 23.18 S 51.09 W

text: chicken gut metagenome

text: chicken gut metagenome


Stenotrophomonas maltophilia NNSm 2482

text: NNIIEM name acad.I.N. Blokhina

text: live

text: Microbe, viral or environmental

text: Russia

text: Homo sapiens

text: Stenotrophomonas maltophilia

text: pure culture

text: NNSm 2482

text: Microbe sample from Stenotrophomonas maltophilia


text: Thapar Institute of Engineering & Technology

text: live

text: Microbe, viral or environmental

text: India

text: Cement sample

text: Bacillus paranthracis

text: Cell culture

text: Microbe sample from Bacillus paranthracis


WT

text: Anhui Medical University

text: live

text: Human

text: missing

text: missing

text: China:Hefei

text: missing

characteristic: isolate

text: Homo sapiens

text: missing

characteristic: sex

text: missing

text: Human sample from Homo sapiens


KO

text: Anhui Medical University

text: live

text: Human

text: missing

text: missing

text: China:Hefei

text: missing

text: Homo sapiens

text: missing

text: missing

text: Human sample from Homo sapiens

characteristic: title


Acinetobacter baumannii NNAb 2483

text: NNIIEM name acad.I.N. Blokhina

text: live

text: Microbe, viral or environmental

text: Russia

text: Homo sapiens

text: Acinetobacter baumannii

text: pure culture

text: NNAb 2483

characteristic: strain

text: Microbe sample from Acinetobacter baumannii


text: Guangzhou University of Chinese Medici

text: live

text: Plant

text: not collect

characteristic: age

text: high oil variety Perilla

characteristic: cultivar

text: not collect

text: not collect

characteristic: ecotype

text: China:Guangzjpu

text: Perilla frutescens

text: seed

characteristic: tissue


text: Guangzhou University of Chinese Medici

text: live

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not collect

text: low oil variety Perilla

text: not collect

text: not collect

text: China:Guangzjpu

text: Perilla frutescens

characteristic: organism

text: seed


Acinetobacter baumannii NNAb 2484

characteristic: External Id

text: NNIIEM name acad.I.N. Blokhina

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Russia

text: Homo sapiens

characteristic: host

text: Acinetobacter baumannii

text: pure culture

text: NNAb 2484


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: missing

characteristic: serovar

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: missing

text: human

characteristic: strain

text: Salmonella enterica

characteristic: title


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Alternaria alstroemeriae

text: fungi culture

text: Microbe sample from Alternaria alstroemeriae


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus niger

text: fungi culture

text: Microbe sample from Aspergillus niger


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus flavus

text: fungi culture

text: Microbe sample from Aspergillus flavus


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Alternaria destruens

text: fungi culture

text: Microbe sample from Alternaria destruens


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus foetidus

text: fungi culture

text: Microbe sample from Aspergillus foetidus


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus costaricensis

text: fungi culture

text: Microbe sample from Aspergillus costaricensis


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus welwitschiae

text: fungi culture

text: Microbe sample from Aspergillus welwitschiae


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus subversicolor

text: fungi culture

text: Microbe sample from Aspergillus subversicolor


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus tubingensis

text: fungi culture

text: Microbe sample from Aspergillus tubingensis


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Penicillium citrinum

text: fungi culture

text: Microbe sample from Penicillium citrinum


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Entoloma anodinum

text: fungi culture

text: Microbe sample from Entoloma anodinum


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus pragensis

text: fungi culture

text: Microbe sample from Aspergillus pragensis


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Cladosporium endophyticum

text: fungi culture

text: Microbe sample from Cladosporium endophyticum


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus campestris

text: fungi culture

text: Microbe sample from Aspergillus campestris


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus costiformis

text: fungi culture

text: Microbe sample from Aspergillus costiformis


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Hyphopichia burtonii

text: fungi culture

text: Microbe sample from Hyphopichia burtonii


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Trichosporon asahii

text: fungi culture

text: Microbe sample from Trichosporon asahii


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Penicillium rubens

text: fungi culture

text: Microbe sample from Penicillium rubens


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Phialemonium inflatum

text: fungi culture

text: Microbe sample from Phialemonium inflatum


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Cladosporium antarcticum

text: fungi culture

text: Microbe sample from Cladosporium antarcticum


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Fusarium guttiforme

text: fungi culture

text: Microbe sample from Fusarium guttiforme


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Penicillium fructuariae-cellae

text: fungi culture

text: Microbe sample from Penicillium fructuariae-cellae


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus aflatoxiformans

text: fungi culture

text: Microbe sample from Aspergillus aflatoxiformans


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus tennesseensis

text: fungi culture

text: Microbe sample from Aspergillus tennesseensis


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Fusarium circinatum

text: fungi culture

text: Microbe sample from Fusarium circinatum


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Fusarium verticillioides

text: fungi culture

text: Microbe sample from Fusarium verticillioides


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Penicillium goetzii

text: fungi culture

text: Microbe sample from Penicillium goetzii


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Penicillium oxalicum

text: fungi culture

text: Microbe sample from Penicillium oxalicum


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus jensenii

text: fungi culture

text: Microbe sample from Aspergillus jensenii


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Talaromyces purpureogenus

text: fungi culture

text: Microbe sample from Talaromyces purpureogenus


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Sarocladium oryzae

text: fungi culture

text: Microbe sample from Sarocladium oryzae


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus austwickii

text: fungi culture

text: Microbe sample from Aspergillus austwickii


text: Qingdao Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Qingdao

text: Gallus gallus

text: feces laying hens

text: Aspergillus versicolor

text: fungi culture

text: Microbe sample from Aspergillus versicolor


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: missing

text: human

text: Salmonella enterica


text: Policlinico Sant'Orsola-Malpighi

text: live

text: Pathogen.cl

text: Maurizio Bufalini Hospital

text: Italy: Cesena

text: Homo sapiens

text: Meningitis

text: cerebrospinal fluid

text: 44.1347 N 12.2596 E

text: Streptococcus pneumoniae

text: Pathogen: clinical or host-associated sample from Streptococcus pneumoniae


Bacillus subtilis VHBSUB-G3

text: Vidya Herbs

text: live

text: Microbe, viral or environmental

text: Not applicable

characteristic: altitude

text: Not applicable

text: Vidya Herbs

text: Not applicable

text: Not applicable

characteristic: depth

text: Bacillus subtilis, commonly known as B. subtilis, is a Gram-positive, rod-shaped bacterium found in soil and the gastrointestinal tracts of humans and animals. It is renowned for its versatility and is widely used in biotechnology, as it can produce various enzymes and antibiotics. B. subtilis plays a crucial role in research and industrial applications.

characteristic: description

text: Not applicable

text: Not applicable

characteristic: genotype

text: India: Hassan , Karnataka

text: Homo sapiens

text: Not applicable

text: Not applicable

text: Not applicable

text: Not applicable

text: Not applicable

text: 13.0033 N 76.1004 E

text: Not applicable

text: Bacillus subtilis

text: Not applicable

text: Not applicable

text: Microbe

text: Not applicable

characteristic: serotype

text: Not applicable

text: Not applicable

text: Microbe

text: Not applicable

characteristic: temp

text: Bacillus subtilis VHBSUB-19


characteristic: External Id

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

characteristic: organism

text: missing

text: missing

text: Needs further review

text: human

text: Salmonella enterica


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Javiana

text: human

text: Salmonella enterica


text: live

characteristic: INSDC status

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Newport

characteristic: serovar

text: human

characteristic: strain

text: Salmonella enterica

characteristic: title


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Typhimurium

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Saintpaul

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: PulseNet

text: Texas Department of State Health Services

text: missing

text: human

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella flexneri

text: missing

text: missing

text: missing

text: human

text: Shigella flexneri


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: missing

text: missing

text: human

text: Escherichia coli


text: Stone, University of California Santa Cruz

text: live

text: Generic

text: HeLa

characteristic: cell line

text: Cervical cancer

characteristic: cell type

text: missing

text: hTR G270C C277G A281T

characteristic: genotype

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

characteristic: tissue

text: HeLa cells, DMS CR4/5 amplicon hTR G270C C277G A218T transfection, rep 2

text: DMS

characteristic: treatment


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: HeLa

text: Cervical cancer

text: missing

text: hTR G270C C277G A281T

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS CR4/5 amplicon hTR G270C C277G A218T transfection, rep 1

text: DMS


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: hTR C277G A281T

text: missing

text: Homo sapiens

characteristic: organism

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS CR4/5 amplicon hTR C277G A218T transfection, rep 2

text: DMS


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: hTR C277G A281T

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS CR4/5 amplicon hTR C277G A218T transfection, rep 1

text: DMS


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: hTR G270C

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS CR4/5 amplicon hTR G270C transfection, rep 2

text: DMS


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: hTR G270C

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS CR4/5 amplicon hTR G270C transfection, rep 1

text: DMS


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS CR4/5 amplicon hTR WT transfection, rep 2

text: DMS


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS CR4/5 amplicon hTR WT transfection, rep 1

text: DMS


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: hTR G270C C277G A281T

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, Untreated CR4/5 amplicon hTR G270C C277G A218T transfection


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: hTR C277G A281T

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, Untreated CR4/5 amplicon hTR C277G A218T transfection


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: hTR G270C

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, Untreated CR4/5 amplicon hTR G270C transfection


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, Untreated CR4/5 amplicon hTR WT transfection


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS lipofectamine control

text: DMS


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, Untreated lipofectamine control


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS CR4/5 amplicon, rep 2

text: DMS


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS CR4/5 amplicon, rep 1

text: DMS


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, DMS PK amplicon, rep 1

text: DMS


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, Untreated CR4/5 amplicon


text: live

text: Generic

text: HeLa

text: Cervical cancer

text: missing

text: WT

text: missing

text: Homo sapiens

text: HeLa cell culture

text: HeLa cell culture

text: HeLa cells, Untreated PK amplicon


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

characteristic: serovar

characteristic: strain

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Newport

text: human

text: Salmonella enterica

characteristic: title


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Typhimurium

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Mississippi

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Braenderup

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Javiana

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Saintpaul

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: muenchen

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Thompson

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Needs further review

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Anatum

text: human

text: Salmonella enterica


text: Oslo University

text: live

text: Model organism or animal

text: unknown

text: Bremer Canyon

characteristic: ecotype

text: Australia: Southwestern Australia

text: Orcinus orca

text: not collected

characteristic: sex

text: skin

characteristic: tissue

text: Model organism or animal sample from Orcinus orca


characteristic: External Id

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: United States Air Force School of Aerospace Medicine Public Health Submission Group

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: BARKSDALE AFB

text: USA: Louisiana

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/LA-USAFSAM-S21468/2023

text: clinical

text: Baseline surveillance (random sampling)

text: USAFSAM

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2

text: missing


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: SARS-CoV-2: clinical or host-associated

text: MACDILL AFB

text: Nasopharyngeal Swab

text: USA: Florida

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/FL-USAFSAM-S21469/2023

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: yes - completed

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: MACDILL AFB

text: Nasopharyngeal Swab

text: USA: Florida

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/FL-USAFSAM-S21470/2023

text: clinical

characteristic: organism

text: yes - completed

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: MACDILL AFB

text: Nasopharyngeal Swab

text: USA: Florida

text: Homo sapiens

text: female

text: SARS-CoV-2/Human/USA/FL-USAFSAM-S21471/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: MACDILL AFB

text: Nasopharyngeal Swab

text: USA: Florida

text: Homo sapiens

characteristic: host

text: female

text: SARS-CoV-2/Human/USA/FL-USAFSAM-S21472/2023

characteristic: isolate

text: clinical

text: yes - completed

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: MACDILL AFB

text: Nasopharyngeal Swab

text: USA: Florida

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/FL-USAFSAM-S21473/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: WHITEMAN AFB

text: Nasopharyngeal Swab

text: USA: Missouri

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/MO-USAFSAM-S21474/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: SEYMOUR JOHNSON AFB

text: Nasopharyngeal Swab

text: USA: North Carolina

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/NC-USAFSAM-S21475/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: SEYMOUR JOHNSON AFB

text: Nasopharyngeal Swab

text: USA: North Carolina

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/NC-USAFSAM-S21476/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: MINOT AFB

text: Nasopharyngeal Swab

text: USA: North Dakota

text: Homo sapiens

text: female

text: SARS-CoV-2/Human/USA/ND-USAFSAM-S21477/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: MINOT AFB

text: Nasopharyngeal Swab

text: USA: North Dakota

text: Homo sapiens

text: female

text: SARS-CoV-2/Human/USA/ND-USAFSAM-S21478/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: MINOT AFB

text: Nasopharyngeal Swab

text: USA: North Dakota

text: Homo sapiens

text: female

text: SARS-CoV-2/Human/USA/ND-USAFSAM-S21479/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: FT BLISS

text: Nasopharyngeal Swab

text: USA: Texas

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/TX-USAFSAM-S21480/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: FT BLISS

text: Nasopharyngeal Swab

text: USA: Texas

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/TX-USAFSAM-S21481/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: United States Air Force School of Aerospace Medicine Public Health Submission Group

text: live

text: SARS-CoV-2: clinical or host-associated

text: BARKSDALE AFB

text: Nasal Swab

text: USA: Louisiana

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/LA-USAFSAM-S21482/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: BARKSDALE AFB

text: BAL

text: USA: Louisiana

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/LA-USAFSAM-S21483/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: BARKSDALE AFB

text: Nasopharyngeal Swab

text: USA: Louisiana

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/LA-USAFSAM-S21484/2023

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: WHITEMAN AFB

text: Nasopharyngeal Swab

text: USA: Missouri

text: Homo sapiens

text: female

text: SARS-CoV-2/Human/USA/MO-USAFSAM-S21485/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: CANNON AFB

text: Nasopharyngeal Swab

text: USA: New Mexico

text: Homo sapiens

text: female

text: SARS-CoV-2/Human/USA/NM-USAFSAM-S21486/2023

text: clinical

text: yes - completed

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: MINOT AFB

text: Nasopharyngeal Swab

text: USA: North Dakota

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/ND-USAFSAM-S21488/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: MINOT AFB

text: Nasopharyngeal Swab

text: USA: North Dakota

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/ND-USAFSAM-S21489/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: MINOT AFB

text: Nasopharyngeal Swab

text: USA: North Dakota

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/ND-USAFSAM-S21490/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: live

text: SARS-CoV-2: clinical or host-associated

text: MINOT AFB

text: Nasopharyngeal Swab

text: USA: North Dakota

text: Homo sapiens

text: male

text: SARS-CoV-2/Human/USA/ND-USAFSAM-S21492/2023

text: clinical

text: Diagnostic Testing

text: Baseline surveillance (random sampling)

text: USAFSAM

text: missing


text: Oslo University

text: live

text: Model organism or animal

text: unknown

characteristic: age

text: Ningaloo

text: Australia: Northwestern Australia

text: Orcinus orca

text: female

text: skin

text: Model organism or animal sample from Orcinus orca


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

characteristic: serovar

characteristic: strain

text: Escherichia coli

characteristic: title


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: Southern Medical University

text: live

text: Human

text: not applicable

text: Li Ma

text: missing

text: China

text: not applicable

text: Homo sapiens

text: replicate = biological replicate 1

characteristic: replicate

text: not applicable

characteristic: sex

text: not applicable

characteristic: tissue


characteristic: External Id

text: Southern Medical University

text: live

text: Human

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not applicable

text: Li Ma

text: missing

text: China

text: not applicable

text: Homo sapiens

text: replicate = biological replicate 2

text: not applicable

text: not applicable


text: Southern Medical University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Human

characteristic: SRA accession

text: not applicable

text: Li Ma

text: missing

text: China

text: not applicable

text: Homo sapiens

text: replicate = biological replicate 3

text: not applicable

text: not applicable


text: Southern Medical University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Human

text: not applicable

text: Li Ma

text: missing

text: China

text: not applicable

text: Homo sapiens

characteristic: organism

text: replicate = biological replicate 4

text: not applicable

text: not applicable


text: University of Iowa

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: State Hygienic Laboratory at the University of Iowa

text: USA: Iowa

text: Homo sapiens

characteristic: host

characteristic: isolate

text: clinical

text: Baseline surveillance


Saccharum officinarum SP280-3280 BAC

text: UNICAMP

text: live

text: Plant

text: 10 weeks

characteristic: age

characteristic: cultivar

text: raw PACBIO sequences of Saccharum officinarum hybrid SP80-3280 cultivar

characteristic: description

text: Brazil

text: Saccharum hybrid cultivar SP80-3280

text: leaf

text: Plant sample from Saccharum officinarum


text: Blackshaw lab, Neuroscience, Johns Hopkins University

text: live

text: Generic

text: male

characteristic: Sex

text: 2 months old

text: missing

text: missing

text: Mus musculus

characteristic: strain

text: The nucleus reuniens of the thalamus

text: FosTRAP2;Ai14, the nucleus reuniens of the thalamus, snRNA-Seq, with sleep deprivation [MW12]

characteristic: title

text: with sleep deprivation

characteristic: treatment


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: male

text: 2 months old

text: missing

text: missing

text: Mus musculus

text: The nucleus reuniens of the thalamus

characteristic: tissue

text: FosTRAP2;Ai14, the nucleus reuniens of the thalamus, snRNA-Seq, with sleep deprivation [MW11]

text: with sleep deprivation


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: male

text: 2 months old

text: missing

text: missing

text: Mus musculus

text: The nucleus reuniens of the thalamus

text: FosTRAP2;Ai14, the nucleus reuniens of the thalamus, snRNA-Seq, without sleep deprivation [MW10]

text: without sleep deprivation


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: male

text: 2 months old

text: missing

text: missing

text: Mus musculus

characteristic: organism

text: The nucleus reuniens of the thalamus

text: FosTRAP2;Ai14, the nucleus reuniens of the thalamus, snRNA-Seq, without sleep deprivation [MW9]

text: without sleep deprivation


text: live

text: Generic

text: male

text: 2 months old

characteristic: age

text: missing

text: missing

text: Mus musculus

text: The nucleus reuniens of the thalamus

text: FosTRAP2;Ai14, the nucleus reuniens of the thalamus, snRNA-Seq, with sleep deprivation [MW2]

text: with sleep deprivation


text: live

text: Generic

text: male

text: 2 months old

text: missing

text: missing

text: Mus musculus

text: The nucleus reuniens of the thalamus

text: FosTRAP2;Ai14, the nucleus reuniens of the thalamus, snRNA-Seq, without sleep deprivation [MW1]

text: without sleep deprivation


text: FDA CVM NARMS-North Carolina State University

text: live

text: Pathogen.env

text: animal

characteristic: SourceType

text: NCSU CVM Thakur Lab

text: USA:NC

text: missing

text: Chicken Heart

text: missing

text: Escherichia coli

text: Pathogen: environmental/food/other sample from Escherichia coli


Saccharum officinarum IACSP93-3046

text: UNICAMP

text: live

text: Plant

text: 10 week

characteristic: cultivar

text: raw PACBIO reads from multiple BAC sequences from S. officinarum hybrid cultivar IACSP93-3046

characteristic: description

text: Brazil

text: Saccharum hybrid cultivar

text: leaf

text: Plant sample from Saccharum officinarum IACSP93-3046


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: missing

text: missing

characteristic: serovar

text: human

characteristic: strain

text: Escherichia coli

characteristic: title


ADI IsletCore R513

characteristic: External Id

text: University of Alberta

text: live

text: Human

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ADI IsletCore

text: Canada: Edmonton

text: Homo sapiens

text: female

characteristic: sex

text: pancreatic islets of Langerhans

characteristic: tissue

text: Human sample from Homo sapiens


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: missing

text: missing

text: USA:WI

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

characteristic: INSDC status

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter jejuni

characteristic: organism

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter coli

text: missing

text: Campylobacter coli


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Shigella sonnei

text: missing

text: missing

text: missing

text: human

text: Shigella sonnei


text: Shixenze University (Shixenze University)

text: live

text: Metagenome or environmental

text: anthesis

characteristic: age

characteristic: cultivar

text: missing

characteristic: ecotype

text: China

text: Gossypium sp.

text: Chongdie Wu

text: missing

text: plant metagenome

characteristic: replicate

characteristic: stp

text: leaf

text: Metagenome or environmental sample from plant metagenome


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: anthesis

text: missing

text: China

text: Gossypium sp.

text: Chongdie Wu

text: missing

text: plant metagenome

text: root

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: anthesis

text: missing

text: China

text: Gossypium sp.

text: Chongdie Wu

text: missing

text: plant metagenome

text: Rhizo

characteristic: tissue


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: anthesis

text: missing

text: China

text: Gossypium sp.

text: Chongdie Wu

text: missing

text: plant metagenome

text: stem


text: live

characteristic: INSDC status

text: Metagenome or environmental

text: harvest period

text: missing

text: China

text: Gossypium sp.

characteristic: host

text: Chongdie Wu

text: missing

text: plant metagenome

characteristic: organism

text: seed


text: Canadian Food Inspection Agency

text: live

text: Pathogen.env

text: CFIA

text: Canada: Ontario

text: Pre-treated sample

text: Escherichia coli

characteristic: strain


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: missing

characteristic: serovar

text: human

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: Missing

text: Missing

text: Missing

text: missing

text: Missing

text: Missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.env

text: MO

text: USA:MO

text: missing

text: missing

text: Chicken livers

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.env

text: MO

text: missing

text: missing

text: missing

text: Chicken livers

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: Listeria monocytogenes


text: China Pharmaceutical University

text: live

text: Model organism or animal

characteristic: age

text: missing

characteristic: breed

text: missing

text: missing

characteristic: cultivar

text: Adult

text: missing

characteristic: ecotype

text: China

text: missing

text: Mus musculus

text: male

characteristic: sex

text: missing


characteristic: External Id

text: Nanyang Technological University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Singapore

text: Homo sapiens

text: sputum

text: 1.321577 N 103.849033 E

text: metagenome

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: FDA CVM NARMS - Tennesse DOH

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: Tennessee Department of Health Laboratory Services

text: USA: Tennessee

text: Homo sapiens

characteristic: host

text: clinical

characteristic: organism

text: Baseline surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: FDA CVM NARMS - Tennesse DOH

text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: Tennessee

text: Homo sapiens

characteristic: isolate

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: Baseline surveillance


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

characteristic: strain

text: Salmonella enterica


tag: Namespace:Sample name

text: United States Department of Agriculture, Food Safety and Inspection Service

text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:SD

text: Animal-Swine-Market Swine (cecal)

text: missing

text: Campylobacter coli

text: Pathogen: environmental/food/other sample from Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:PA

text: Animal-Swine-Sow (cecal)

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:IL

text: Animal-Cattle-Heifer (cecal)

text: missing

text: Campylobacter jejuni

text: Pathogen: environmental/food/other sample from Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:NE

text: Animal-Cattle-Steer (cecal)

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:CA

text: Animal-Cattle-Steer (cecal)

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:MN

text: Animal-Turkey-Young Turkey (cecal)

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:TX

text: Animal-Cattle-Steer (cecal)

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:OH

text: Animal-Turkey-Young Turkey (cecal)

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:GA

text: chicken - young chicken carcass rinse (post-chill)

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:DE

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:CA

text: Animal-Turkey-Young Turkey (cecal)

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:MO

text: Animal-Swine-Market Swine (cecal)

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:GA

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:MN

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:AR

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:MD

text: comminuted chicken

text: missing

text: Campylobacter coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Salmonella enterica


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:IL

text: raw intact chicken

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:GA

text: raw intact chicken

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:NC

text: raw intact chicken

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:CA

text: raw intact chicken

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:AL

text: raw intact chicken

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:NE

text: raw intact chicken

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:TN

text: Nonintact Chicken

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:TX

text: raw intact chicken

text: missing

text: Campylobacter coli


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:MO

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: USDA-FSIS

text: USA:CA

text: raw intact chicken

text: missing

text: Campylobacter coli


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter upsaliensis

text: missing

characteristic: serovar

text: Campylobacter upsaliensis


text: Molecular Informatics Core, UTHSC

text: live

text: Generic

characteristic: cell line

text: breast cancer

characteristic: cell type

text: missing

text: missing

text: Homo sapiens

text: breast

text: breast

characteristic: tissue

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: Escherichia coli


text: University of Alicante

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: Spain:Tabarca,Alicante

text: Vibrio mediterranei

text: coral mucus

text: Vibrio phage adelos

text: Microbe sample from Vibrio phage adelos

characteristic: title


text: University of Alicante

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Spain:Tabarca,Alicante

text: Vibrio mediterranei

text: coral mucus

text: Vibrio phage lipares

text: Microbe sample from Vibrio phage lipares


text: IRTA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: SRA accession

text: GSB fed GSB diet 16 days post-IMT

characteristic: description

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: Intestinal striping and mucosal scraping

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB 17 days post-AMs

text: Spain

text: Sparus aurata

characteristic: host

text: 40.62778 N 0.6588874 W

text: gut metagenome

characteristic: organism

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB fed salmon diet 16 days post-IMT

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB fed GSB diet 36 days post-IMT

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB fed salmon diet 36 days post-IMT

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB fed GSB diet 2 days post-IMT

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB fed salmon diet 2 days post-IMT

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB fed GSB diet 7 days post-IMT

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB 8 days post-AMs

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB fed salmon diet 7 days post-IMT

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB diet

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: Pool homogenization

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: Salmon diet

text: Spain

text: Salmo salar

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: Pool homogenization

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB 24 h post-AMs

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: GSB pre-AMs pre-IMT

text: Spain

text: Sparus aurata

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: IRTA

text: live

text: Metagenome or environmental

text: Salmon microbiota

text: Spain

text: Salmo salar

text: 40.62778 N 0.6588874 W

text: gut metagenome

text: 16S rRNA gene V3-V4


text: University of California, San Francisco

text: live

text: Generic

text: RM-iPSC line

characteristic: cell line

text: retinal organoids

text: missing

text: RHO-CNV

characteristic: genotype

text: missing

text: Homo sapiens

text: RM-iPSC line

text: 7-days post-treatment

characteristic: time


text: University of California, San Francisco

text: live

text: Generic

text: RM-iPSC line

text: retinal organoids

characteristic: cell type

text: missing

text: RHO-CNV

text: missing

text: Homo sapiens

text: RM-iPSC line

text: disease

text: Vehicle

characteristic: treatment


characteristic: External Id

text: University of California, San Francisco

characteristic: INSDC center name

text: live

text: Generic

text: RC-iPSC line

text: retinal organoids

text: missing

text: WT

text: missing

text: Homo sapiens

text: RC-iPSC line

text: Ctrl

text: Vehicle


text: CT Public Health Laboratory submission group

characteristic: INSDC first public

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1158805001aa/2023

characteristic: isolate

text: clinical

text: Random sampling

text: Baseline Surveillance


characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1159888001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1160727001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

characteristic: host

text: SARS-CoV-2/Human/USA/CT-DPH-1160728001a/2023

text: clinical

characteristic: organism

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1160729001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1160730001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1160731001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1160788001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1160790001a/2023

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1161117001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1161766001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1161771001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1161776001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1161779001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: CT Public Health Laboratory submission group

text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1162694001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1162696001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1162697001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1162699001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1162700001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1162701001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1162702001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1162703001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1162704001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1163103001a/2023

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1163104001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1163105001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1163106001a/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1164315001/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: CT Public Health Laboratory submission group

text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1164316001/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: CT Department of Public Health

text: USA: Connecticut

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CT-DPH-1164317001/2023

text: clinical

text: Random sampling

text: Baseline Surveillance


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: PulseNet

text: Texas Department of State Health Services

text: missing

characteristic: serovar

text: human

characteristic: strain

text: Salmonella enterica


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

characteristic: description

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 1

characteristic: replicate

text: Internally Threaded Cryogenic Storage Vials

text: Liquid nitrogen or dry ice

text: not applicable


characteristic: External Id

text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 2

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 3

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 4

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 5

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 6

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 7

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 8

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 9

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 10

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 11

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 12

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 13

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 14

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 15

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the long-term group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 16

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 17

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 18

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 19

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 20

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 21

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 22

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 23

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 24

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 25

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 26

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 27

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 28

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 29

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 30

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 31

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 32

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 33

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 34

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 35

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 36

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 37

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 38

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 39

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 40

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 41

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 42

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 43

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 44

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 45

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 46

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 47

text: Liquid nitrogen or dry ice

text: not applicable


text: Nanjing Argcultural University

text: live

text: Metagenome or environmental

text: Feces of mice in the diabetic group

text: not collected

text: Mice

text: feces

text: not collected

text: mouse gut metagenome

text: replicate = biological replicate 48

text: Liquid nitrogen or dry ice

text: not applicable


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: Utah Public Health Laboratory Infectious Disease submission group

characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: Utah Public Health Laboratory

text: USA: Utah

text: Homo sapiens

text: patient isolate


text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: PulseNet

text: missing

text: human

text: Salmonella enterica


text: Oregon State University

text: live

text: SARS-CoV-2: wastewater surveillance

text: Oregon State University/Oregon Health Authority

text: USA: Oregon

text: wastewater

text: wastewater metagenome

text: public health surveillance community-level

text: Oregon State University

text: SARS-CoV-2: wastewater surveillance sample from wastewater metagenome

characteristic: title

text: raw wastewater

text: wastewater treatment plant

text: composite

text: copies/L

text: N gene (orf9)

text: yes

text: Not Provided: ddPCR detection of SARS-CoV-2 using the BioRad nCoV assay on the BioRad QXTwo


characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: PulseNet

text: missing

text: human

text: Listeria monocytogenes


text: Centers for Disease Control and Prevention Enteric Diseases Laboratory Branch

text: live

characteristic: INSDC status

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Vibrio alginolyticus

text: PulseNet

text: missing

text: missing

text: human

text: Vibrio alginolyticus


text: live

text: Pathogen.cl

characteristic: SRA accession

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: Hebrew University of Jerusalem

text: live

text: Generic

text: pancreatic beta-cells

characteristic: cell type

text: missing

text: Adar KO

characteristic: genotype

text: missing

text: Mus musculus

text: pancreas

text: pancreas

characteristic: tissue

text: pancreatic beta-cells, Adar-knockout, 7 days after tamoxifen injection, rep4