text: South China Agricultural University

text: live

text: Microbe, viral or environmental

text: China: Guangzhou

text: fish

characteristic: host

text: MALDI-TOF and 16S rRNA sequencing

text: farmers' market

text: Enterobacteriaceae bacterium

text: Bacteria

text: Microbe sample from Enterobacteriaceae bacterium


status: PUBLIC

characteristic: External Id

text: South China Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

tag: attribute

text: China: Guangzhou

text: fish

text: MALDI-TOF and 16S rRNA sequencing

characteristic: isolate

text: farmers' market

text: Enterobacteriaceae bacterium

characteristic: organism

text: Bacteria

characteristic: strain

characteristic: title


text: Christian-Albrechts-University Kiel

characteristic: INSDC secondary accession

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: SRA accession

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: Homo sapiens

text: stool

text: stool

text: not applicable

text: Homo sapiens

text: feces

text: human

text: adult

text: stool

text: not applicable

text: metagenome

characteristic: replicate


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Homo sapiens

text: oral

text: oral

text: not applicable

text: Homo sapiens

text: human

text: adult

text: oral cavity

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Galleria mellonella

text: stool

text: stool

text: not applicable

text: Galleria mellonella

text: feces

text: greater wax moth

text: larva

text: stool

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: extraction blank

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Galleria mellonella

text: gut

text: gut

text: not applicable

text: Galleria mellonella

text: greater wax moth

text: larva

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Cyanobacteria

text: culture

text: culture

text: not applicable

text: Cyanobacteria

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Drosophila melanogaster

text: gut

text: gut

text: not applicable

text: Drosophila melanogaster

text: fruit fly

text: adult

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Drosophila melanogaster

text: body

text: body

text: not applicable

text: Drosophila melanogaster

text: fruit fly

text: adult

text: body

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Aplysina aerophoba

text: not applicable

text: Aplysina aerophoba

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Halichondria panicea

text: not applicable

text: Halichondria panicea

text: breadcrumb sponge

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: positive control

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: no template control

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: soil

text: soil

text: positive control

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mnemiopsis leidyi

text: epidermis

text: epidermis

text: not applicable

text: Mnemiopsis leidyi

text: sea walnut

text: medusa

text: epidermis

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mnemiopsis leidyi

text: gut

text: gut

text: not applicable

text: Mnemiopsis leidyi

text: sea walnut

text: medusa

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Triticum aestivum

text: surface

text: surface

text: not applicable

text: Triticum aestivum

text: bread wheat

text: Obelisk

text: root

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Triticum aestivum

text: surface

text: surface

text: not applicable

text: Triticum aestivum

text: bread wheat

text: Obelisk

text: leaf

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Hydra vulgaris

text: whole animal

text: whole animal

text: not applicable

text: Hydra vulgaris

text: swiftwater hydra

text: polyp

text: AEP

text: whole animal

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mus musculus domesticus

text: gut

text: gut

text: not applicable

text: Mus musculus domesticus

text: western European house mouse

text: adult

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mus musculus musculus

text: gut

text: gut

text: not applicable

text: Mus musculus musculus

text: eastern European house mouse

text: adult

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: extraction blank

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Homo sapiens

text: oral

text: oral

text: not applicable

text: Homo sapiens

text: human

text: adult

text: oral cavity

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: soil

text: soil

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Aurelia aurita

text: whole animal

text: whole animal

text: not applicable

text: Aurelia aurita

text: moon jelly

text: polyp

text: North Atlantic (Roscoff)

text: whole animal

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Aurelia aurita

text: whole animal

text: whole animal

text: not applicable

text: Aurelia aurita

text: moon jelly

text: medusa

text: North Atlantic (Roscoff)

text: whole animal

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Caenorhabditis elegans

text: gut

text: gut

text: not applicable

text: Caenorhabditis elegans

text: adult

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Slug

text: feces

text: feces

text: not applicable

text: feces

text: slug

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: compost

text: compost

text: compost

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: positive control

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: no template control

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Homo sapiens

text: skin

text: skin

text: not applicable

text: Homo sapiens

text: human

text: adult

text: skin

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Homo sapiens

text: oral

text: oral

text: not applicable

text: Homo sapiens

text: human

text: adult

text: oral cavity cavity

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Homo sapiens

text: stool

text: stool

text: not applicable

text: Homo sapiens

text: feces

text: human

text: adult

text: stool

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Homo sapiens

text: oral

text: oral

text: not applicable

text: Homo sapiens

text: feces

text: human

text: adult

text: oral cavity

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Homo sapiens

text: stool

text: stool

text: not applicable

text: Homo sapiens

text: human

text: adult

text: stool

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Aplysina aerophoba

text: not applicable

text: Aplysina aerophoba

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mus musculus musculus

text: gut

text: gut

text: not applicable

text: Mus musculus musculus

text: eastern European house mouse

text: adult

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: extraction blank

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Drosophila melanogaster

text: gut

text: gut

text: not applicable

text: Drosophila melanogaster

text: fruit fly

text: adult

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Drosophila melanogaster

text: body

text: body

text: not applicable

text: Drosophila melanogaster

text: fruit fly

text: adult

text: body

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mnemiopsis leidyi

text: epidermis

text: epidermis

text: not applicable

text: Mnemiopsis leidyi

text: sea walnut

text: medusa

text: epidermis

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Galleria mellonella

text: stool

text: stool

text: not applicable

text: Galleria mellonella

text: feces

text: greater wax moth

text: larva

text: stool

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mnemiopsis leidyi

text: gut

text: gut

text: not applicable

text: Mnemiopsis leidyi

text: sea walnut

text: medusa

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Galleria mellonella

text: gut

text: gut

text: not applicable

text: Galleria mellonella

text: greater wax moth

text: larva

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: soil

text: soil

text: soil

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Hydra vulgaris

text: whole animal

text: whole animal

text: not applicable

text: Hydra vulgaris

text: swiftwater hydra

text: polyp

text: AEP

text: whole animal

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Caenorhabditis elegans

text: gut

text: not applicable

text: Caenorhabditis elegans

text: adult

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Slug

text: feces

text: feces

text: not applicable

text: slug

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: compost

text: compost

text: compost

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mus musculus domesticus

text: gut

text: gut

text: not applicable

text: Mus musculus domesticus

text: western European house mouse

text: adult

text: gut

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Halichondria panicea

text: not applicable

text: Halichondria panicea

text: breadcrumb sponge

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Aurelia aurita

text: whole animal

text: whole animal

text: not applicable

text: Aurelia aurita

text: moon jelly

text: medusa

text: North Atlantic (Roscoff)

text: whole animal

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: MOCK

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: no template control

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: NTC

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: extraction blank

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Positive control

text: not applicable

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Homo sapiens

text: skin

text: skin

text: not applicable

text: Homo sapiens

text: human

text: adult

text: skin

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Triticum aestivum

text: leaf

text: surface

text: not applicable

text: Triticum aestivum

text: bread wheat

text: Obelisk

text: leaf

text: not applicable

text: metagenome


text: Christian-Albrechts-University Kiel

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: not applicable

text: Keywords: GSC:MIxS;MIMS:6.0

text: Triticum aestivum

text: root

text: surface

text: not applicable

text: Triticum aestivum

text: bread wheat

text: Obelisk

text: root

text: not applicable

text: metagenome


text: Institute of Physical and Systems Biology, Shenzhen Bay Laboratory

text: live

text: Generic

characteristic: cell line

text: missing

text: missing

text: Escherichia coli

text: 7F0K, after selection, 10-3


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 7F0K, before selection


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LF2, after selection, 10-2


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LF2, before selection


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 7CHQ, after selection, 25-2


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 7CHQ, before selection


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6TN7, after selection, 25-2


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6TN7, before selection


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, after selection, 400-3


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, after selection, 400-2


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, after selection, 400-1


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, after selection, 100-3


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, after selection, 100-2


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, after selection, 100-1


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, after selection, 25-3


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, after selection, 25-2


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, after selection, 25-1


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 6LYD, before selection


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, after selection, 400-3


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, after selection, 400-2


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, after selection, 400-1


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, after selection, 100-3


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, after selection, 100-2


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, after selection, 100-1


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, after selection, 25-3


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, after selection, 25-2


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, after selection, 25-1


text: live

text: Generic

text: missing

text: missing

text: Escherichia coli

text: 108 opools, before selection


text: College of Horticultural Science and Engineering, Shandong Agricultural University

text: live

text: Generic

text: Protective organisation

text: epidermal cell

characteristic: cell type

text: missing

text: WT

characteristic: genotype

text: missing

text: Malus domestica

text: pericarp of apples

text: pericarp of apples

characteristic: tissue

text: Vacuum in ddH2O2 for 5 minutes

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Protective organisation

text: epidermal cell

text: missing

text: WT

text: missing

text: Malus domestica

text: pericarp of apples

text: pericarp of apples

text: 5 μmol L-1 of EGCG in aqueous solution for 5 min.


text: Swedish University of Agricultural Sciences

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Sweden

text: tomato

characteristic: host

text: rhizosphere

text: Pseudomonas salmasensis

text: Single cell

text: Microbe sample from Pseudomonas salmasensis


text: Systems Medicine and Bioengineering, Houston Methodist Cancer Center

characteristic: INSDC secondary accession

text: live

text: Generic

text: missing

text: Breast Cancer

characteristic: disease

text: GD3S overexpression

text: missing

text: Homo sapiens

characteristic: organism

text: MCF7 cells with GD3S overexpression, treated by Nutlin3A, replicate #6

characteristic: title


text: live

text: Generic

characteristic: SRA accession

characteristic: cell line

text: missing

text: Breast Cancer

text: GD3S overexpression

text: missing

text: Homo sapiens

text: MCF7 cells with GD3S overexpression, treated by Nutlin3A, replicate #5


text: live

text: Generic

text: missing

text: Breast Cancer

text: GD3S overexpression

characteristic: genotype

text: missing

text: Homo sapiens

text: MCF7 cells with GD3S overexpression, treated by Nutlin3A, replicate #4


text: live

text: Generic

text: missing

text: Breast Cancer

text: GD3S overexpression

text: missing

text: Homo sapiens

text: MCF7 cells with GD3S overexpression, treated by DMSO, replicate #3

text: DMSO


text: live

text: Generic

text: missing

text: Breast Cancer

text: GD3S overexpression

text: missing

text: Homo sapiens

text: MCF7 cells with GD3S overexpression, treated by DMSO, replicate #2

text: DMSO


text: live

text: Generic

text: missing

text: Breast Cancer

text: GD3S overexpression

text: missing

text: Homo sapiens

text: MCF7 cells with GD3S overexpression, treated by DMSO, replicate #1

text: DMSO


text: live

text: Generic

text: missing

text: Breast Cancer

text: Control/Wildtype

text: missing

text: Homo sapiens

text: wildtype MCF7 cells treated by Nutlin3A, replicate #3


text: live

text: Generic

text: missing

text: Breast Cancer

text: Control/Wildtype

text: missing

text: Homo sapiens

text: wildtype MCF7 cells treated by Nutlin3A, replicate #2


text: live

text: Generic

text: missing

text: Breast Cancer

text: Control/Wildtype

text: missing

text: Homo sapiens

text: wildtype MCF7 cells treated by Nutlin3A, replicate #1


text: live

text: Generic

text: missing

text: Breast Cancer

text: Control/Wildtype

text: missing

text: Homo sapiens

text: wildtype MCF7 cells treated by DMSO, replicate #3

text: DMSO


text: live

text: Generic

text: missing

text: Breast Cancer

text: Control/Wildtype

text: missing

text: Homo sapiens

text: wildtype MCF7 cells treated by DMSO, replicate #2

text: DMSO


text: live

text: Generic

text: missing

text: Breast Cancer

text: Control/Wildtype

text: missing

text: Homo sapiens

text: wildtype MCF7 cells treated by DMSO, replicate #1

text: DMSO


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 1

text: Metagenome or environmental sample from mouse gut metagenome


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 2


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 3


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 4


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 5


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 6


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 7


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 8


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 9


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 10


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 11


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 12


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 13


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 14


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 15


text: Cornell University

text: live

text: Metagenome or environmental

text: USA: Newyork, Ithaca

text: Mus musculus

text: stool

text: 42.4440 N 76.5019 W

text: mouse gut metagenome

text: Cage 16


text: Boston Children's Hospital

text: live

text: Model organism or animal

text: National Institute of Health

text: Adult

text: China

text: Macaca mulatta

text: female

characteristic: sex

text: Macaca mulatta

characteristic: strain

text: Peripheral Blood

characteristic: tissue

text: Model organism or animal sample from Macaca mulatta


characteristic: External Id

text: Boston Children's Hospital

characteristic: INSDC center name

text: live

text: Model organism or animal

text: National Institute of Health

text: Adult

text: India:China

text: Macaca mulatta

text: female

text: Macaca mulatta

text: Peripheral Blood


text: Department of Biochemistry and Molecular Biology, University of Southern Denmark

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: NSCLC cell line

characteristic: cell type

text: missing

text: WT

text: missing

text: Homo sapiens

text: 3 Days

characteristic: time

text: A549, BRQ, 3 Days, R3

text: BRQ 1 µM

characteristic: treatment


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: NSCLC cell line

text: missing

text: WT

text: missing

text: Homo sapiens

text: 3 Days

text: A549, BRQ, 3 Days, R2

text: BRQ 1 µM


text: live

text: Generic

characteristic: SRA accession

text: NSCLC cell line

text: missing

text: WT

text: missing

text: Homo sapiens

characteristic: organism

text: 3 Days

text: A549, BRQ, 3 Days, R1

characteristic: title

text: BRQ 1 µM


text: live

text: Generic

characteristic: cell line

text: NSCLC cell line

text: missing

text: WT

characteristic: genotype

text: missing

text: Homo sapiens

text: 3 Days

text: A549, Control, 3 Days, R3

text: No treatment


text: live

text: Generic

text: NSCLC cell line

text: missing

text: WT

text: missing

text: Homo sapiens

text: 3 Days

text: A549, Control, 3 Days, R2

text: No treatment


text: live

text: Generic

text: NSCLC cell line

text: missing

text: WT

text: missing

text: Homo sapiens

text: 3 Days

text: A549, Control, 3 Days, R1

text: No treatment


text: University of Bergen

text: live

text: Pathogen.cl

text: SPAdes

text: Joel Manyahi

characteristic: filename

text: Tanzania: Dar es Salaam

text: Homo sapiens

characteristic: host

text: Bloodstream infections

text: Pus

text: 6.8165 S 39.2894 E

text: Klebsiella pneumoniae

text: Illumina MiSeq

characteristic: strain

text: Pathogen: clinical or host-associated sample from Klebsiella pneumoniae


characteristic: External Id

text: University of Bergen

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: SPAdes

text: Joel Manyahi

text: Tanzania: Dar es Salaam

text: Homo sapiens

text: Bloodstream infections

text: blood

text: 6.8165 S 39.2894 E

text: Klebsiella pneumoniae

text: Illumina MiSeq


text: UPMC Hillman Cancer Center/University of Pittsburgh

characteristic: INSDC last update

text: live

text: Generic

text: non-PGCC

characteristic: cell population

text: missing

text: TNBC

text: missing

text: Homo sapiens

text: Breast Cancer

text: Breast Cancer

characteristic: tissue

text: Vari068 Docetacel non-PGCC

text: Docetaxel


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: PGCC

text: missing

text: TNBC

text: missing

text: Homo sapiens

text: Breast Cancer

text: Breast Cancer

text: Vari068 Docetacel PGCC

text: Docetaxel

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: non-PGCC

text: missing

text: TNBC

text: missing

text: Homo sapiens

text: Breast Cancer

text: Breast Cancer

text: Vari068 Control non-PGCC

text: No


text: live

text: Generic

characteristic: cell line

text: PGCC

text: missing

text: TNBC

text: missing

text: Homo sapiens

characteristic: organism

text: Breast Cancer

text: Breast Cancer

text: Vari068 Control PGCC

characteristic: title

text: No


text: live

text: Generic

text: non-PGCC

text: missing

text: TNBC

characteristic: genotype

text: missing

text: Homo sapiens

text: Breast Cancer

text: Breast Cancer

text: SUM159 Docetacel non-PGCC

text: Docetaxel


text: live

text: Generic

text: PGCC

text: missing

text: TNBC

text: missing

text: Homo sapiens

text: Breast Cancer

text: Breast Cancer

text: SUM159 Docetacel PGCC

text: Docetaxel


text: live

text: Generic

text: Control

text: missing

text: TNBC

text: missing

text: Homo sapiens

text: Breast Cancer

text: Breast Cancer

text: SUM159 Control

text: No


text: live

text: Generic

text: non-PGCC

text: missing

text: TNBC

text: missing

text: Homo sapiens

text: Breast Cancer

text: Breast Cancer

text: MDA-MB-231 Docetacel non-PGCC

text: Docetaxel


text: live

text: Generic

text: PGCC

text: missing

text: TNBC

text: missing

text: Homo sapiens

text: Breast Cancer

text: Breast Cancer

text: MDA-MB-231 Docetacel PGCC

text: Docetaxel


text: live

text: Generic

text: Control

text: missing

text: TNBC

text: missing

text: Homo sapiens

text: Breast Cancer

text: Breast Cancer

text: MDA-MB-231 Control

text: No


text: Department of Biology and Bioinformatics Program, Boston University

text: live

text: Generic

text: male

characteristic: Sex

text: 8-10 weeks

characteristic: age

text: Mus musculus

text: Liver

text: CD-1 (Charles River)

characteristic: strain

text: Liver

text: Male_STAT5_High_replicate9_G74A_M1_outlier


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: male

text: 8-10 weeks

text: Mus musculus

text: Liver

text: CD-1 (Charles River)

text: Liver

text: Male_STAT5_High_replicate10_G74A_M2_outlier


characteristic: INSDC last update

text: live

text: Generic

text: male

text: 8-10 weeks

text: Mus musculus

text: Liver

text: CD-1 (Charles River)

text: Liver

characteristic: tissue

text: Male_STAT5_Low_replicate11_G92_M5_outlier


text: Lee Lab, Pathology, Tulane University School of Medicine

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: BER-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

text: BER-DSRCT

text: ATAC-seq, BER-DSRCT, Sphere Culture, Rep 2

text: Sphere


text: live

text: Generic

characteristic: NCBI submission model

text: BER-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

text: BER-DSRCT

text: ATAC-seq, BER-DSRCT, Sphere Culture, Rep 1

text: Sphere

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: BER-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

text: BER-DSRCT

text: ATAC-seq, BER-DSRCT, Adherent Culture, Rep 2

text: Adherent


text: live

text: Generic

text: BER-DSRCT

characteristic: cell line

text: missing

text: WT

text: missing

text: Homo sapiens

characteristic: organism

text: BER-DSRCT

text: ATAC-seq, BER-DSRCT, Adherent Culture, Rep 1

text: Adherent


text: University of Utah

text: live

text: Generic

characteristic: antibody

text: Human CCS cell

characteristic: cell type

text: missing

characteristic: genotype

text: missing

text: Homo sapiens

characteristic: title


characteristic: External Id

text: University of Utah

text: live

text: Generic

text: input

text: Human CCS cell

text: missing

text: missing

text: Homo sapiens


text: University of Utah

characteristic: INSDC center name

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, Input-4


text: University of Utah

characteristic: INSDC first public

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, Input-3


text: University of Utah

characteristic: INSDC last update

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, Input-2


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

characteristic: tissue

text: mouse CCS, Input-1


text: University of Utah

characteristic: INSDC secondary accession

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, H3k27ac-4


text: University of Utah

text: live

characteristic: INSDC status

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, pol2-4


text: University of Utah

text: live

text: Generic

characteristic: NCBI submission model

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, V5-4


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, H3k27ac-3


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, pol2-3


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, V5-3


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, H3k27ac-2


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, pol2-2


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, V5-2


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, H3k27ac-1


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, pol2-1


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: Tumor

text: Tumor

text: mouse CCS, V5-1


text: University of Utah

text: live

text: Generic

text: tumor cell

text: missing

text: KD EA1-2

text: missing

text: Homo sapiens


text: University of Utah

text: live

text: Generic

text: tumor cell

text: missing

text: KD EA1-1

text: missing

text: Homo sapiens


text: University of Utah

text: live

text: Generic

text: tumor cell

text: missing

text: KD scramble control

text: missing

text: Homo sapiens


text: University of Utah

text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: Frozen human CCS tumor samples

text: Frozen human CCS tumor samples


text: live

text: Generic

text: BOD-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

text: BOD-DSRCT

text: BOD-DSRCT, Sphere Culture, Rep 2

text: Sphere

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission package

text: BOD-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

text: BOD-DSRCT

text: BOD-DSRCT, Sphere Culture, Rep 1

text: Sphere


text: live

text: Generic

characteristic: SRA accession

text: BOD-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

text: BOD-DSRCT

text: BOD-DSRCT, Adherent Culture, Rep 2

text: Adherent


text: live

text: Generic

text: BOD-DSRCT

characteristic: cell line

text: missing

text: WT

text: missing

text: Homo sapiens

text: BOD-DSRCT

text: BOD-DSRCT, Adherent Culture, Rep 1

text: Adherent


text: live

text: Generic

text: BER-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

characteristic: organism

text: BER-DSRCT

text: BER-DSRCT, Sphere Culture, Rep 2

text: Sphere


text: live

text: Generic

text: BER-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

text: BER-DSRCT

text: BER-DSRCT, Sphere Culture, Rep 1

text: Sphere


text: live

text: Generic

text: BER-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

text: BER-DSRCT

text: BER-DSRCT, Adherent Culture, Rep 2

text: Adherent


text: live

text: Generic

text: BER-DSRCT

text: missing

text: WT

text: missing

text: Homo sapiens

text: BER-DSRCT

text: BER-DSRCT, Adherent Culture, Rep 1

text: Adherent


text: live

text: Generic

text: missing

text: WT

text: missing

text: Homo sapiens

text: JN-DSRCT-1, Sphere Culture, Rep 2

text: Sphere


text: live

text: Generic

text: missing

text: WT

text: missing

text: Homo sapiens

text: JN-DSRCT-1, Sphere Culture, Rep 1

text: Sphere


text: live

text: Generic

text: missing

text: WT

text: missing

text: Homo sapiens

text: JN-DSRCT-1, Adherent Culture, Rep 2

text: Adherent


text: live

text: Generic

text: missing

text: WT

text: missing

text: Homo sapiens

text: JN-DSRCT-1, Adherent Culture, Rep 1

text: Adherent


text: Greninger

text: live

text: Pathogen.cl

text: UW Medicine

text: USA

text: Homo sapiens

characteristic: host

text: not collected

characteristic: isolate

text: Lesion swab

text: 47.6062 N 122.3321 W

text: Monkeypox virus

text: Pathogen: clinical or host-associated sample from Monkeypox virus


text: Greninger

text: live

text: Pathogen.cl

text: UW Medicine

text: USA

text: Homo sapiens

text: not collected

text: Rectal swab

text: 47.6062 N 122.3321 W

text: Monkeypox virus


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: Thermo Fisher MagMAX Viral/Pathogen Nucleic Acid Isolation kit and Zymo OneStep PCR Inhibitor Removal kit

text: USA: California

text: wastewater

text: wastewater metagenome

text: public health surveillance community-level

text: Verily Life Sciences

text: SARS-CoV-2: wastewater surveillance sample from wastewater metagenome

text: post grit removal

text: wastewater treatment plant

text: composite

text: CA

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: Virginia

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: post grit removal

text: wastewater treatment plant

text: composite

text: VA

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: Hawaii

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: post grit removal

text: wastewater treatment plant

text: composite

text: HI

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: Kansas

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: secondary effluent

text: wastewater treatment plant

text: composite

text: KS

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: Connecticut

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: raw wastewater

text: wastewater treatment plant

text: composite

text: CT

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: Florida

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: post grit removal

text: wastewater treatment plant

text: grab

text: FL

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: Iowa

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: raw wastewater

text: wastewater treatment plant

text: composite

text: IA

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: Maine

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: post grit removal

text: wastewater treatment plant

text: grab

text: ME

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: post grit removal

text: wastewater treatment plant

text: grab

text: NC

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: Maine

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: raw wastewater

text: wastewater treatment plant

text: composite

text: ME

text: gene copies/L wastewater

text: N gene

text: yes


text: Verily Life Sciences LLC

text: live

text: SARS-CoV-2: wastewater surveillance

text: Ceres Nanotrap Microbiome A

text: BCoV

text: USA: California

text: wastewater

text: wastewater metagenome

text: Verily Life Sciences

text: raw wastewater

text: wastewater treatment plant

text: composite

text: CA

text: gene copies/L wastewater

text: N gene

text: yes


CS 1

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome

text: Metagenome or environmental sample from fungus metagenome


CS 2

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


CS 3

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


CS 4

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


CS 5

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


ZZ 1

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


ZZ 2

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


ZZ 3

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


ZZ 4

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


ZZ 5

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


HJ 1

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis metagenome

text: missing

text: missing

text: fungus metagenome


HJ 2

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: missing

text: missing

text: soil metagenome

text: Metagenome or environmental sample from soil metagenome


HJ 3

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: missing

text: missing

text: soil metagenome


HJ 4

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: missing

text: missing

text: soil metagenome


HJ 5

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: missing

text: missing

text: soil metagenome


CW 1

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: missing

text: missing

text: soil metagenome


CW 2

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: missing

text: missing

text: soil metagenome


CW 3

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: missing

text: missing

text: soil metagenome


CW 4

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: missing

text: missing

text: soil metagenome


CW 5

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: missing

text: missing

text: soil metagenome


C 1

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis

text: missing

text: fungus metagenome


T 2

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis

text: missing

text: fungus metagenome


W 3

text: Northwest Institute of Plateau Biology

text: live

text: Metagenome or environmental

text: China:QingHai

text: Ophiocordyceps sinensis

text: missing

text: fungus metagenome


text: Centre of Biotechnology of Sfax

text: live

text: Microbe, viral or environmental

text: Tunisia

text: soil

text: Bacillus thuringiensis

text: Cell culture

characteristic: strain

text: Microbe sample from Bacillus thuringiensis


text: Zhejiang University

text: live

text: Metagenome or environmental

text: China: Daye, Hubei Province

text: soil

text: bulk soil

text: 30.01 N 114.81 E

text: soil metagenome

characteristic: title


characteristic: External Id

text: Zhejiang University

text: live

text: Metagenome or environmental

text: China: Daye, Hubei Province

text: Pteris vittata

text: rhizosphere

text: 30.01 N 114.81 E

text: rhizosphere metagenome


text: Zhejiang University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: China: Daye, Hubei Province

text: Pteris vittata

text: root

text: 30.01 N 114.81 E

text: root metagenome


text: Zhejiang University

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: China: Zhuzhou, Hunan Province

text: soil

text: bulk soil

text: 22.93 N 104.52 E

text: soil metagenome


text: Zhejiang University

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: China: Zhuzhou, Hunan Province

text: Pteris vittata

text: rhizosphere

text: 22.93 N 104.52 E

text: rhizosphere metagenome


text: Zhejiang University

text: live

text: Metagenome or environmental

text: China: Zhuzhou, Hunan Province

text: Pteris vittata

text: root

text: 22.93 N 104.52 E

text: root metagenome


text: Zhejiang University

text: live

text: Metagenome or environmental

text: China: Wenshan, Yunnan Province

text: soil

text: bulk soil

text: 28.48 N 121.34 E

text: soil metagenome


text: Zhejiang University

text: live

text: Metagenome or environmental

text: China: Wenshan, Yunnan Province

text: Pteris vittata

text: rhizosphere

text: 28.48 N 121.34 E

text: rhizosphere metagenome


text: Zhejiang University

text: live

text: Metagenome or environmental

text: China: Wenshan, Yunnan Province

text: Pteris vittata

text: root

text: 28.48 N 121.34 E

text: root metagenome


text: Zhejiang University

text: live

text: Metagenome or environmental

text: China: Huzhou, Zhejiang Province

text: soil

text: bulk soil

text: 30.81 N 120.06 E

text: soil metagenome


text: Zhejiang University

text: live

text: Metagenome or environmental

text: China: Huzhou, Zhejiang Province

text: Pteris vittata

text: rhizosphere

text: 30.81 N 120.06 E

text: rhizosphere metagenome


text: Center for Translational Research in Infection and Inflammation, Medicine, Tulane University

text: live

text: Generic

text: missing

characteristic: genotype

text: missing

text: Mus musculus

text: lung

text: lung

characteristic: tissue

text: K18-hACE2, PR8, Day6_4_bulk RNA

text: H1N1 infection (50PFU, A/PR/8/34(PR8))


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, PR8, Day6_3_bulk RNA

text: H1N1 infection (50PFU, A/PR/8/34(PR8))


text: live

text: Generic

characteristic: NCBI submission model

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, PR8, Day6_2_bulk RNA

text: H1N1 infection (50PFU, A/PR/8/34(PR8))

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, PR8, Day6_1_bulk RNA

text: H1N1 infection (50PFU, A/PR/8/34(PR8))


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

characteristic: organism

text: lung

text: lung

text: K18-hACE2, PR8, Day4_4_bulk RNA

text: H1N1 infection (50PFU, A/PR/8/34(PR8))


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, PR8, Day4_3_bulk RNA

text: H1N1 infection (50PFU, A/PR/8/34(PR8))


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, PR8, Day4_2_bulk RNA

text: H1N1 infection (50PFU, A/PR/8/34(PR8))


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, PR8, Day4_1_bulk RNA

text: H1N1 infection (50PFU, A/PR/8/34(PR8))


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, SARS-CoV-2, Day6_3_bulk RNA

text: SARS-CoV-2 infection (2.0 X10^5/TCID50, WA1/2020)


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, SARS-CoV-2, Day6_2_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, SARS-CoV-2, Day6_1_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, SARS-CoV-2, Day4_3_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, SARS-CoV-2, Day4_2_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, SARS-CoV-2, Day4_1_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, naïve_4_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, naïve_3_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, naïve_2_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, naïve_1_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, SARS-CoV-2, Day21_3_bulk RNA

text: SARS-CoV-2 infection (1.0 X10^4/TCID50, WA1/2020)


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, SARS-CoV-2, Day21_2_bulk RNA


text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: lung

text: lung

text: K18-hACE2, SARS-CoV-2, Day21_1_bulk RNA


text: live

text: Generic

text: Influenza

characteristic: agent

text: missing

text: missing

text: Mus musculus

text: Lung

characteristic: time point

text: Lung

text: Influenza mice Day6_2, scRNAseq


text: live

text: Generic

text: Influenza

text: missing

text: missing

text: Mus musculus

text: Lung

text: Lung

text: Influenza mice Day6_1, scRNAseq


text: live

text: Generic

text: Influenza

text: missing

text: missing

text: Mus musculus

text: Lung

text: Lung

text: Influenza mice Day4, scRNAseq


text: Texas Department of State Health Services-ARLN/HAI-Seq submission group

text: live

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

characteristic: host

text: missing

characteristic: isolate

text: blood

text: Staphylococcus aureus

text: whole organism

text: Microbe sample from Staphylococcus aureus


characteristic: External Id

text: FDA CVM NARMS-North Carolina State University

text: live

text: Pathogen.env

text: animal

characteristic: SourceType

text: NCSU CVM Thakur Lab

text: USA:NC

text: missing

text: Ground Beef

text: missing

text: Escherichia coli

characteristic: strain

text: Pathogen: environmental/food/other sample from Escherichia coli

characteristic: title


text: Chenqi Xu Lab, Shanghai Institute of Biochemistry and Cell Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Normal colon cell

characteristic: cell type

text: missing

text: Normal

characteristic: disease

text: missing

text: Mus musculus

text: Colon

text: Colon

text: AOM/DSS


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Tumor cell

text: missing

text: colorectal cancer

text: missing

text: Mus musculus

text: Colon

text: Colon

characteristic: tissue

text: AOM/DSS

characteristic: treatment


text: European Bioinformatics Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Pool of male adult F2 intercross individuals in a cross between Swedish and Catalan individuals.

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: Leptidea sinapis

characteristic: organism

text: Leptidea sinapis

text: Leptidea sinapis


characteristic: External Id

text: European Bioinformatics Institute

text: live

text: Generic

text: not collected

text: Protocols: Bacteria were harvested in ice-cold killing buffer (50 mM Tris pH 7.5, 5 mM MgCl2, 20 mM NaN3), centrifuged at 4750 rpm for 10 min at 4°C and the pellets were immediately frozen in liquid nitrogen and stored at −80°C. S.p. were cultivated in supplemented RPMI medium in the presence or absence of 10% FCS, which was added to the +FCS culture at an OD600 of 0.3. The control1 culture was harvested prior to FCS treatment. The +FCS and –FCS cultures were harvested after 2 hours of growth after reaching OD600 of 0.3. The bacteria were not treteated at an OD600 of 0.3 with FCS RNA isolation was performed using an acidic phenol-chloroform extraction protocol (Wetzstein et al., 1992). After DNase-I treatment (Zymo Research, Germany), the RNA quality was checked by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). For RNA-seq transcriptomics, Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, United States) was applied to prepare the cDNA libraries.

text: not collected

text: not applicable

characteristic: isolate

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

characteristic: organism part

text: Streptococcus pneumoniae

characteristic: strain

characteristic: title


text: European Bioinformatics Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: not collected

text: Protocols: Bacteria were harvested in ice-cold killing buffer (50 mM Tris pH 7.5, 5 mM MgCl2, 20 mM NaN3), centrifuged at 4750 rpm for 10 min at 4°C and the pellets were immediately frozen in liquid nitrogen and stored at −80°C. S.p. were cultivated in supplemented RPMI medium in the presence or absence of 10% FCS, which was added to the +FCS culture at an OD600 of 0.3. The control1 culture was harvested prior to FCS treatment. The +FCS and –FCS cultures were harvested after 2 hours of growth after reaching OD600 of 0.3. 10% FCS, was added to the +FCS culture at an OD600 of 0.3 for 2 hours. RNA isolation was performed using an acidic phenol-chloroform extraction protocol (Wetzstein et al., 1992). After DNase-I treatment (Zymo Research, Germany), the RNA quality was checked by Trinean Xpose (Gentbrugge, Belgium) and the Agilent RNA Nano 6000 kit using an Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). For RNA-seq transcriptomics, Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, United States) was applied to prepare the cDNA libraries.

text: not collected

text: not applicable

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: whole organism

text: Streptococcus pneumoniae


text: European Bioinformatics Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: broad-scale environmental context

text: < 2

characteristic: depth

text: Site 11C Reef sample

characteristic: environmental medium

text: Panama

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Isla Coiba

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

text: uncultured bacterium

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample collection device

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature


characteristic: External Id

text: European Bioinformatics Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: All samples are collected at University Hospital for Infectious Diseases in Zagreb as a part of the study of molecular epidemiology of HIV infection. For this purpose clinical plasma samples were collected from HIV-1 patients. HIV-1 RNA was extracted from 500 μl of patient's plasma sample by using the QIAmp Viral RNA Mini Kit (Qiagen, Hilden, Germany). HIV-1 RNA was reverse transcribed with SuperScript III First-Strand Synthesis System for RT-PCR (Invitrogen, Carlsbad, CA) and HIV-1 specific primer.Amplification of target region for each sample was done in 4 separate multiplex PCR reactions using ALLinTM Taq DNA Polymerase (highQu GmbH, UK). For this purpose we constructed 22 primer pairs that span specific region of interest. After multiplex PCR, amplicons of each sample were pooled in one tube and purified with Agencourt Ampure XP beads (Beckman Coulter, Germany). Viral DNA libraries were prepared for deep sequecing with NEBNext UltraTM II DNA Library Prep Kit for Illumina (MA, USA), according to the manufacturer's instructions.

characteristic: description

text: adult

characteristic: developmental stage

text: HIV infection

characteristic: disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: HIV-1 Subtype A (A1)

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood plasma

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: External Id

text: European Bioinformatics Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: broad-scale environmental context

text: < 2

characteristic: depth

text: Site MYS Reef sample

characteristic: environmental medium

text: Panama

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Panama, Bocas del Toro

characteristic: geographic location (region and locality)

characteristic: local environmental context

text: uncultured bacterium

text: uncultured bacterium

characteristic: pH

text: Transisthmian Marine Virome

characteristic: project name

characteristic: salinity

text: 0.22uM filtration

characteristic: sample collection device

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: illumina nextseq

characteristic: sequencing method

characteristic: temperature