tag: Namespace:DOE Joint Genome Institute

text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Genomics of the early diverging lineages of fungi

text: Backusella lamprospora

text: NRRL 6053

text: Mucor lamprosporus NRRL 6053 Resequencing


status: PUBLIC

characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: description

text: Backusella lamprospora

characteristic: organism

text: NRRL 6041

tag: attribute

characteristic: strain

text: Mucor lamprosporus NRRL 6041 Resequencing

characteristic: title


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Functional genomics of gut bacteria from endangered species of beetle (Heterelmis comalensis) from the Edwards Aquifer, Texas, USA

text: USA: Texas

characteristic: geo loc name

text: Roseateles chitosanitabidus

text: Mitsuaria chitosanitabida S00132


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: USA: Texas

text: Roseateles chitosanitabidus

text: Mitsuaria chitosanitabida S00106


text: National Institute for Materials Science

text: live

text: Generic

text: open circuit condition (without electrode)

characteristic: electrode potential

text: H-type three-electrode reactor

characteristic: eletrochemical reactor

text: 7 days

characteristic: incubation time

text: Nitratidesulfovibrio vulgaris

text: Bacterial cells incubated under an open circuit condition

text: Hildenoborough

text: oc


characteristic: External Id

text: live

text: Generic

text: −0.2 V versus standard hydrogen electrode

text: H-type three-electrode reactor

text: 7 days

text: Nitratidesulfovibrio vulgaris

text: Bacterial cells incubated on a −0.2 V-poised ITO electrode

text: Hildenoborough


text: Medicine, University of Pennsylvania

characteristic: INSDC center name

text: live

text: Generic

text: Pancreatic ductal adenocarcinoma

characteristic: diagnosis

text: Homo sapiens

text: RNA isolated from FFPE block

text: Pancreas

characteristic: tissue


text: DOE Joint Genome Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

characteristic: culture-collection

text: Genome sequencing as part of The One Thousand Microbial Genomes Phase 4 (KMG IV) project

text: Desulfomicrobium macestii

text: DSM 4194

text: Desulfomicrobium macestii DSM 4194

text: type strain of Desulfobacterium macestii

characteristic: type-material


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: cultivar

text: Brachypodium sylvaticum Sin1 Gene Expression Profiling; Sample from roots

characteristic: description

text: missing

characteristic: elevation

text: Brachypodium sylvaticum

text: Brachypodium sylvaticum Sin-1 Gene Expression Profiling - R18_034


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Brachypodium sylvaticum Sin1 Gene Expression Profiling; Sample from leaves

text: missing

text: Brachypodium sylvaticum

characteristic: organism

text: Brachypodium sylvaticum Sin-1 Gene Expression Profiling - R18_089

characteristic: title


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum

text: Brachypodium sylvaticum Sin-1 Gene Expression Profiling - R18_018


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum

text: Brachypodium sylvaticum Sin-1 Gene Expression Profiling - R18_056


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum

text: Brachypodium sylvaticum Sin-1 Gene Expression Profiling - R18_072


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum

text: Brachypodium sylvaticum Sin-1 Gene Expression Profiling - R18_071


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: missing

text: Brachypodium sylvaticum


Female

text: Shanghai Ocean University

text: live

text: Model organism or animal

text: Three-month

characteristic: age

text: not applicable

characteristic: breed

text: not applicable

text: Adult fish

text: not applicable

characteristic: ecotype

text: not applicable

characteristic: isolate

text: Oryzias latipes

text: female

characteristic: sex

text: HdrR

characteristic: strain

text: ovary

characteristic: tissue

text: Female


Male

text: Shanghai Ocean University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

text: Three-month

text: not applicable

text: not applicable

text: Adult fish

text: not applicable

text: not applicable

text: Oryzias latipes

text: male

text: HdrR

text: testis

text: Male


Dictyosphaerium sp.

text: Xinjiang University

text: live

text: Plant

characteristic: NCBI submission package

characteristic: SRA accession

text: thallus

text: China:Urumchi

text: sp.

text: Dictyosphaerium sp. LW-2020a

text: thallus

text: Plant sample from Dictyosphaerium


text: IBiS, Universidad de Sevilla-CSIC

text: live

text: Generic

text: 48 hpf

characteristic: developmental stage

text: WT

characteristic: genotype

text: Danio rerio

characteristic: organism

text: whole embryo

text: HiC in zebrafish wild-type embryos at 48hpf, replicate 2

characteristic: title


characteristic: External Id

text: IBiS, Universidad de Sevilla-CSIC

characteristic: INSDC center name

text: live

text: Generic

text: 48 hpf

text: WT

text: Danio rerio

text: whole embryo

text: HiC in zebrafish wild-type embryos at 48hpf, replicate 1


text: IBiS, Universidad de Sevilla-CSIC

text: live

text: Generic

text: CTCF

characteristic: chip antibody

text: 24 hpf

text: WT

text: Danio rerio

text: whole embryo

text: ChIP-seq in zebrafish wild-type embryos at 24hpf, replicate 1


Solvent control_replicate1

text: Dalian University of Technology

text: live

text: Invertebrate

text: 14 day

characteristic: age

text: not collected

characteristic: breed

text: collected in Solvent control

characteristic: description

text: China

text: missing

characteristic: host

text: Solvent control

characteristic: isolate

text: not applicable

text: Artemia salina

text: replicate = biological replicate 1

characteristic: replicate

text: not applicable

characteristic: sex

characteristic: temp

text: body

text: Invertebrate sample from Artemia salina


Solvent control_replicate2

text: Dalian University of Technology

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 14 day

text: not collected

text: collected in Solvent control

text: China

text: missing

text: Solvent control

text: not applicable

text: Artemia salina

text: replicate = biological replicate 2

text: not applicable

text: body

characteristic: tissue

text: Invertebrate sample from Artemia salina


characteristic: External Id

text: Dalian University of Technology

characteristic: INSDC center name

text: live

text: Invertebrate

characteristic: SRA accession

text: 14 day

text: not collected

text: collected after OAL treatment

text: China

text: missing

text: not applicable

text: Artemia salina

characteristic: organism

text: replicate = biological replicate 1

text: not applicable

text: body

text: Invertebrate sample from Artemia salina

characteristic: title


text: Dalian University of Technology

text: live

text: Invertebrate

text: 14 day

characteristic: age

text: not collected

characteristic: breed

text: collected after OAL treatment

characteristic: description

text: China

text: missing

characteristic: host

text: not applicable

text: Artemia salina

text: replicate = biological replicate 2

text: not applicable

text: body

text: Invertebrate sample from Artemia salina


text: Dalian University of Technology

text: live

text: Invertebrate

text: 14 day

text: not collected

text: collected after OAL treatment

text: China

text: missing

characteristic: isolate

text: not applicable

text: Artemia salina

text: replicate = biological replicate 3

characteristic: replicate

text: not applicable

characteristic: sex

characteristic: temp

text: body

text: Invertebrate sample from Artemia salina


text: Dalian University of Technology

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

text: 14 day

text: not collected

text: collected after OAH treatment

text: China

text: missing

text: not applicable

text: Artemia salina

text: replicate = biological replicate 1

text: not applicable

text: body

text: Invertebrate sample from Artemia salina


characteristic: External Id

text: Dalian University of Technology

text: live

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 14 day

text: not collected

text: collected after OAH treatment

text: China

text: missing

text: not applicable

text: Artemia salina

text: replicate = biological replicate 2

text: not applicable

text: body

characteristic: tissue

text: Invertebrate sample from Artemia salina


text: Dalian University of Technology

characteristic: INSDC center name

text: live

text: Invertebrate

characteristic: SRA accession

text: 14 day

text: not collected

text: collected after OAH treatment

text: China

text: missing

text: not applicable

text: Artemia salina

characteristic: organism

text: replicate = biological replicate 3

text: not applicable

text: body

text: Invertebrate sample from Artemia salina

characteristic: title


text: Dalian University of Technology

text: live

text: Invertebrate

text: 14 day

characteristic: age

text: not collected

characteristic: breed

text: collected after PL treatment

characteristic: description

text: China

text: missing

characteristic: host

text: PL

text: not applicable

text: Artemia salina

text: replicate = biological replicate 1

text: not applicable

text: body

text: Invertebrate sample from Artemia salina


text: Dalian University of Technology

text: live

text: Invertebrate

text: 14 day

text: not collected

text: collected after PL treatment

text: China

text: missing

text: PL

characteristic: isolate

text: not applicable

text: Artemia salina

text: replicate = biological replicate 2

characteristic: replicate

text: not applicable

characteristic: sex

characteristic: temp

text: body

text: Invertebrate sample from Artemia salina


text: Dalian University of Technology

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

text: 14 day

text: not collected

text: collected after PL treatment

text: China

text: missing

text: PL

text: not applicable

text: Artemia salina

text: replicate = biological replicate 3

text: not applicable

text: body

text: Invertebrate sample from Artemia salina


Control(pure compounds)-T. viride

characteristic: External Id

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: USA: University Park, Pennsylvania

text: Isolated from the commercial biocontrol product called Custom GP

text: Trichoderma viride

text: The fungal culture was not exposed to any chemicals

text: not applicable

characteristic: strain

text: Microbe sample from Trichoderma viride


4-ethylanisole_20 uM-T. viride

text: The Pennsylvania State University

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: USA: University Park, Pennsylvania

text: Trichoderma viride

characteristic: organism

text: The fungal culture was exposed to 4-ethylanisole at the concentration of 20 uM

text: not applicable

text: Microbe sample from Trichoderma viride

characteristic: title


4-ethylanisole_100 uM-T. viride

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma viride

text: The fungal culture was exposed to 4-ethylanisole at the concentration of 100 uM

text: not applicable

text: Microbe sample from Trichoderma viride


3-methyl-1-butanol_20 uM-T. viride

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma viride

text: The fungal culture was exposed to 3-methyl-1-butanol at the concentration of 20 uM

text: not applicable

text: Microbe sample from Trichoderma viride


3-methyl-1-butanol_100 uM-T. viride

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma viride

text: The fungal culture was exposed to 3-methyl-1-butanol at the concentration of 100 uM

text: not applicable

text: Microbe sample from Trichoderma viride


Isopentyl acetate_20 uM-T. viride

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma viride

text: The fungal culture was exposed to isopentyl acetate at the concentration of 20 uM

text: not applicable

text: Microbe sample from Trichoderma viride


Isopentyl acetate_100 uM-T. viride

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma viride

text: The fungal culture was exposed to isopentyl acetate at the concentration of 100 uM

text: not applicable

text: Microbe sample from Trichoderma viride


Control(culture_based)-T. viride

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma viride

text: The fungal culture was not exposed to any fungal culture

text: not applicable

text: Microbe sample from Trichoderma viride


NRRL38272-T. viride

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma viride

text: The fungal culture was exposed to volatile compounds produced by Fusarium oxysporum NRRL38272

text: not applicable

text: Microbe sample from Trichoderma viride


9605-T. viride

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma viride

text: The fungal culture was exposed to volatile compounds produced by Fusarium oxysporum 9605

text: not applicable

text: Microbe sample from Trichoderma viride


NRRL26029-T. viride

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma viride

text: The fungal culture was exposed to volatile compounds produced by Fusarium oxysporum NRRL26029

text: not applicable

text: Microbe sample from Trichoderma viride


Control(pure compounds)-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Isolated from the commercial biocontrol product called RootShield

text: Trichoderma harzianum

text: Microbe sample from Trichoderma harzianum


4-ethylanisole_20 uM-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


4-ethylanisole_100 uM-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


3-methyl-1-butanol_20 uM-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


3-methyl-1-butanol_100 uM-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


Isopentyl acetate_20 uM-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


Isopentyl acetate_100 uM-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


Control(culture_based)-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


NRRL38272-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


9605-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


NRRL26029-T. harzianum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma harzianum


Control(pure compounds)-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Isolated from the commercial biocontrol product called BIO-TAM 2.0

text: Trichoderma asperellum

text: ICC 012

text: Microbe sample from Trichoderma asperellum


4-ethylanisole_20 uM-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


4-ethylanisole_100 uM-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


3-methyl-1-butanol_20 uM-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


3-methyl-1-butanol_100 uM-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


Isopentyl acetate_20 uM-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


Isopentyl acetate_100 uM-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


Control(culture_based)-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


NRRL38272-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


9605-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


NRRL26029-T. asperellum

text: The Pennsylvania State University

text: live

text: Microbe, viral or environmental

text: USA: University Park, Pennsylvania

text: Trichoderma asperellum

text: ICC 012


strain Dm15

text: Shandong Univesity

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China:Weihai

characteristic: geo loc name

text: Saccharina japonica

characteristic: host

text: Psychroserpens algicola

text: whole organism

characteristic: sample type

text: Microbe sample from Psychroserpens algicola

text: type strain of Flavihalobacter algicola

characteristic: type material


text: Oncogenomics, Netherlands Cancer Institute (NKI)

characteristic: INSDC first public

text: live

text: Generic

text: Melanoma cancer cells

characteristic: cell type

text: Homo sapiens

text: MD55A3 cells

text: GCN2 KO + IFNg

characteristic: treatment


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Melanoma cancer cells

text: Homo sapiens

text: MD55A3 cells

text: GCN1 KO + IFNg


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Melanoma cancer cells

text: Homo sapiens

text: MD55A3 cells

text: Non-targeting Control + IFNg


characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Melanoma cancer cells

text: Homo sapiens

text: MD55A3 cells

text: GCN2 KO


text: live

text: Generic

text: Melanoma cancer cells

text: Homo sapiens

characteristic: organism

text: MD55A3 cells

characteristic: title

text: GCN1 KO


text: live

text: Generic

text: Melanoma cancer cells

text: Homo sapiens

text: MD55A3 cells

text: Non-targeting Control


text: live

text: Generic

text: Melanoma cancer cells

text: Homo sapiens

text: MD55A3 cells

text: Phenylalanine depletion


text: live

text: Generic

text: Melanoma cancer cells

text: Homo sapiens

text: MD55A3 cells

text: Tryptophan depletion


text: live

text: Generic

text: Melanoma cancer cells

text: Homo sapiens

text: MD55A3 cells

text: Untreated control


text: CFSA

text: live

text: Microbe, viral or environmental

text: CFSA

text: China:Fujina

text: Homo sapiens

characteristic: isolate

text: Listeria monocytogenes

text: tissue sample

text: Microbe sample from Listeria monocytogenes


text: CFSA

text: live

text: Microbe, viral or environmental

text: CFSA

text: China:Beijing

text: Homo sapiens

characteristic: host

text: Listeria monocytogenes

text: tissue sample


biogas slurry

text: Hainan University

text: live

text: Microbe, viral or environmental

text: 16S rDNA amplicon sequencing

characteristic: description

text: China:Xiamen

text: not applicable

text: not applicable

text: not applicable

text: Pseudomonadota

text: whole organism

text: not applicable

characteristic: strain

text: Microbe sample from Pseudomonadota


text: Hackensack-Meridian Health Center for Discovery and Innovation

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: MDRO network

characteristic: collected by

characteristic: collection date

text: USA: South

characteristic: geo loc name

text: Homo sapiens

text: respiratory

characteristic: isolation source

text: Klebsiella pneumoniae


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

text: MDRO network

text: USA: South

text: Homo sapiens

text: urine

text: Klebsiella pneumoniae


characteristic: External Id

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: MDRO network

text: USA: Midwest

text: Homo sapiens

text: urine

text: Klebsiella pneumoniae


text: Institute of Bioengineering, Research Center of Biotechnology of RAS

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: This biosample is a metagenomic assembly obtained from the volcano metagenome sample SAMN15091510

characteristic: derived-from

text: true

characteristic: environmetal-sample

text: Ukraine: eastern Crimea

text: bubbling pool in the central crater-like structure of an active mud volcano

text: 45.4261 N 36.4780 E

characteristic: lat lon

text: volcano metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Desulforudis sp.

characteristic: organism

text: metagenomic assembly

characteristic: sample type

text: Metagenome-assembled Genome sample Candidatus Desulforudis sp. Kmv41


Prevotella brevis An923

text: Veterinary Research Institute

characteristic: INSDC first public

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.host-associated

text: commensal

characteristic: biotic relationship

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Prevotella brevis An923

text: healthy

text: Sus scrofa

characteristic: host

text: feces

characteristic: host body product

text: Xylanibacter brevis

text: anaerobic

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Xylanibacter brevis

characteristic: title


Prevotella brevis An925

characteristic: External Id

text: Veterinary Research Institute

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission package

text: commensal

text: Keywords: GSC:MIxS;MIGS:6.0

text: Prevotella brevis An925

text: healthy

text: Sus scrofa

text: feces

text: Xylanibacter brevis

text: anaerobic


Ruminococcus gnavus ET50

text: Veterinary Research Institute

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: SRA accession

text: commensal

text: Keywords: GSC:MIxS;MIGS:6.0

text: Ruminococcus gnavus ET50

text: healthy

text: Sus scrofa

text: feces

text: Mediterraneibacter gnavus

characteristic: organism

text: anaerobic

text: MIGS Cultured Bacterial/Archaeal sample from Mediterraneibacter gnavus


WT micro-tom RNA-seq

text: China Agricultural University

characteristic: INSDC first public

text: live

text: Plant

text: fruit

characteristic: age

text: Solanum lycopersicum

characteristic: cultivar

text: fruit

text: Micro-Tom

characteristic: ecotype

text: China

text: own

characteristic: isolate

text: Solanum lycopersicum

text: fruit

characteristic: tissue

text: WT micro-tom fruit RNA-seq


CR-RZ1A RNA-seq

text: China Agricultural University

text: live

text: Plant

text: fruit

text: Solanum lycopersicum

text: fruit

text: Micro-Tom

text: China

text: own

text: Solanum lycopersicum

text: fruit

text: CR-RZ1A fruit RNA-seq


text: Belgian Nuclear Research Centre

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Belgium

characteristic: geo loc name

text: ZnR

text: laboratory experiment

characteristic: isolation source

text: Cupriavidus metallidurans CH34

text: whole organism

characteristic: sample type

characteristic: strain

text: CH34 derivative adapted to high Zn concentrations

text: type strain of Ralstonia metallidurans

characteristic: type-material


characteristic: External Id

text: Chinese Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: China

text: gut

text: Roseateles

text: tissue sample

text: Microbe sample from Roseateles

characteristic: title


Chlamydia in crocodile

text: Mahidol University

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Thailand

text: Crocodylus siamensis

characteristic: host

text: liver

text: Chlamydia crocodili

characteristic: organism

text: No. 12

text: Microbe sample from Chlamydia crocodili

text: type strain of Chlamydia crocodili


name: Paenactinomyces guangxiensis CICC 11033=CGMCC 4.7156

text: China National Research Institute of Food and Fermentation Industries

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China: Guangxi

characteristic: geo loc name

text: mushroom compost

text: Paenactinomyces guangxiensis

text: cell culture

text: CICC 11033=CGMCC 4.7156

text: Microbe sample from Paenactinomyces guangxiensis

text: type strain of Thermoactinomyces guangxiensis


CR-RIP1b Bia fruit

text: China Agricultural University

text: live

text: Plant

text: fruit

characteristic: age

text: Solanum lycopersicum

characteristic: cultivar

text: fruit

text: Micro-Tom

characteristic: ecotype

text: China

text: own

characteristic: isolate

text: Solanum lycopersicum

text: fruit

characteristic: tissue

text: CR-RIP1b Bia fruit RNA-seq


CR-RIP1b Ho fruitRNA-seq

characteristic: External Id

text: China Agricultural University

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Plant

text: fruit

text: Solanum lycopersicum

text: fruit

text: Micro-Tom

text: China

text: own

text: Solanum lycopersicum

text: fruit

text: CR-RIP1b Ho fruitRNA-seq


text: The National Institutes of Natural Sciences NINS

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Midbrain tissue

characteristic: strain

text: Midbrain

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

characteristic: organism

text: Forebrain tissue

text: Forebrain


text: live

text: Generic

text: Cdh6.8_Double_knockout_cranial defect

text: Mus musculus

text: Midbrain tissue

text: Midbrain


text: live

text: Generic

text: Cdh6.8_Double_knockout_cranial defect

text: Mus musculus

text: Forebrain tissue

text: Forebrain


text: live

text: Generic

text: Wild-type

text: Mus musculus

text: Midbrain tissue

text: Midbrain


text: live

text: Generic

text: Wild-type

text: Mus musculus

text: Forebrain tissue

text: Forebrain


North Carolina NTM isolate

text: Duke University

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: USA: North Carolina

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Hurricane-soaked wood

characteristic: isolation source

text: Mycolicibacter arupensis

text: WGS reads

characteristic: sample type

text: ATCC BAA-1242

text: Microbe sample from Mycolicibacter arupensis

text: type strain of Mycobacterium arupense

characteristic: type-material


Pseudarthrobacter sulfonivorans ALL

characteristic: External Id

text: Korea university

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: United Kingdom: England

text: Allium aflatunense

text: soil from root balls of Allium aflatunense

text: Pseudarthrobacter sulfonivorans

text: ALL

text: Microbe sample from Pseudarthrobacter sulfonivorans

text: type strain of Arthrobacter sulfonivorans


text: Institute of Urban Environment, CAS

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: description

text: China: Putian

text: reservoir

text: not collected

characteristic: lat lon

text: freshwater metagenome

text: biological replicate 1

characteristic: replicate


text: Institute of Urban Environment, CAS

characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 2

characteristic: title


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

characteristic: SRA accession

characteristic: collection date

text: China: Putian

characteristic: geo loc name

text: reservoir

text: not collected

text: freshwater metagenome

characteristic: organism

text: biological replicate 3


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

characteristic: isolation source

text: not collected

text: freshwater metagenome

text: biological replicate 4


characteristic: External Id

text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 5


text: Institute of Urban Environment, CAS

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 6


text: Institute of Urban Environment, CAS

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 7


text: Institute of Urban Environment, CAS

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 8


text: Institute of Urban Environment, CAS

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 9


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

characteristic: description

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 10


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

characteristic: lat lon

text: freshwater metagenome

text: biological replicate 11


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 12

characteristic: replicate


text: Institute of Urban Environment, CAS

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 13


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 14


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 15


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 16

characteristic: title


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 17


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

characteristic: collection date

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 18


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

text: China: Putian

characteristic: geo loc name

text: reservoir

text: not collected

text: freshwater metagenome

text: biological replicate 19


text: Institute of Urban Environment, CAS

text: live

text: Metagenome or environmental

text: China: Putian

text: reservoir

text: not collected

text: freshwater metagenome

characteristic: organism

text: biological replicate 20


text: Liaoning Ocean and Fisheries Science Research Institute

text: live

text: Model organism or animal

text: adult

characteristic: age

characteristic: isolate

text: Apostichopus japonicus

text: not applicable

characteristic: sex

text: body wall

characteristic: tissue

text: Model organism or animal sample from Apostichopus japonicus


OGAPHI

characteristic: External Id

text: Barcelona Supercomputing Center

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Ogataea philodendri

characteristic: strain

text: MIGS Eukaryotic sample from Ogataea philodendri

text: culture from type material of Hansenula philodendri

characteristic: type-material


Cauliflower 1892

text: Basic medical sciences

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

text: Fengshan Tropical Horticultural Experiment Branch

characteristic: cultivar

text: vegetative stage

text: Taiwan

text: Brassica oleracea

text: leaf

text: Plant sample from Brassica oleracea


Apostichopus japonicus WGBS data

text: live

text: Model organism or animal

characteristic: NCBI submission package

characteristic: SRA accession

text: adult

text: WGBS data

characteristic: description

text: Apostichopus japonicus

text: not applicable

text: body wall

characteristic: title


text: Shenyang Agricultural University

text: live

text: Plant

text: flowering stage

characteristic: age

text: missing

text: missing

text: China: Shenyang

characteristic: geo loc name

characteristic: id

text: Brassica rapa

characteristic: organism

text: leaf

text: Plant sample from Brassica rapa


characteristic: External Id

text: Shenyang Agricultural University

characteristic: INSDC center name

text: live

text: Plant

text: flowering stage

text: missing

text: missing

text: China: Shenyang

text: Brassica rapa

text: leaf

characteristic: tissue

text: Plant sample from Brassica rapa


CBP

text: Shandong Agricultural University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Plant

text: 3-4 leaf stage

text: China:He"Nan

text: progeny of purified plant

characteristic: isolate

text: Capsella bursa-pastoris

text: Leaf

text: Plant sample from Capsella bursa-pastoris


text: University of Macau

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: not applicable

text: not applicable

text: not applicable

characteristic: host

text: not applicable

text: not applicable

text: Nakaseomyces glabratus

text: WT

characteristic: strain

text: Microbe sample from Nakaseomyces glabratus


text: University of Macau

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Nakaseomyces glabratus


text: Sun Yat-sen University

text: live

text: Metagenome or environmental

characteristic: age(week)

text: China: Guangzhou

text: Mus musculus

text: feces

text: not applicable

characteristic: number

text: metagenome

text: female

characteristic: sex

text: Metagenome or environmental sample from metagenome

characteristic: title


characteristic: External Id

text: National Institute for Environmental Studies

text: live

text: Generic

characteristic: cell line

text: developing retinal ganglion cells

characteristic: cell type

characteristic: chip antibody

text: Homo sapiens

characteristic: organism

text: pluripotent stem cell

text: Input DNA

text: no irradiation

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 35

characteristic: time point

text: Day 35_180 mGy_H3K4me3_ChIPSeq

text: 180 mGy irradiation


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 35

text: Day 35_0 mGy_H3K4me3_ChIPSeq

text: no irradiation


text: live

text: Generic

characteristic: SRA accession

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 35

text: Day 35_180 mGy_H3K27ac_ChIPSeq

text: 180 mGy irradiation


text: live

text: Generic

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 35

text: Day 35_0 mGy_H3K27ac_ChIPSeq

text: no irradiation


text: live

text: Generic

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 6

text: Day 6_180 mGy_H3K4me3_ChIPSeq

text: 180 mGy irradiation


text: live

text: Generic

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 6

text: Day 6_30 mGy_H3K4me3_ChIPSeq

text: 30 mGy irradiation


text: live

text: Generic

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 6

text: Day 6_0 mGy_H3K4me3_ChIPSeq

text: no irradiation


text: live

text: Generic

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 6

text: Day 6_180 mGy_H3K27ac_ChIPSeq

text: 180 mGy irradiation


text: live

text: Generic

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 6

text: Day 6_30 mGy_H3K27ac_ChIPSeq

text: 30 mGy irradiation


text: live

text: Generic

text: developing retinal ganglion cells

text: Homo sapiens

text: pluripotent stem cell

text: Day 6

text: Day 6_0 mGy_H3K27ac_ChIPSeq

text: no irradiation


text: University of Oklahoma

text: live

text: MIGS.ba

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: laboratory environment

text: cell culture

text: USA: Missouri

characteristic: geo loc name

text: serially-transferred fermentative culture in MOYPc with incremental increases in molybdate from 0.1 to 3 mM

text: 38.945163 N 92.322438 W

characteristic: lat lon

text: Nitratidesulfovibrio vulgaris

characteristic: strain

text: Desulfovibrio vulgaris Hildenborough culture of mutant lacking DVU1295 and adapted to molybdate


characteristic: External Id

text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for WT DvH 1

text: laboratory

characteristic: isolation source

text: Nitratidesulfovibrio vulgaris

text: cell culture

characteristic: sample type

text: Hildenborough replicate 1

text: Microbe sample from Nitratidesulfovibrio vulgaris

characteristic: title


text: Berkeley National Lab

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for WT DvH 2

text: laboratory

text: Nitratidesulfovibrio vulgaris

characteristic: organism

text: cell culture

text: Hildenborough replicate 2


text: Berkeley National Lab

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for WT DvH 3

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: Hildenborough replicate 3


text: Berkeley National Lab

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Tn5 transposon mutant library for WT DvH 4

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: Hildenborough replicate 4


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Tn5 transposon mutant library for WT DvH 5

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: Hildenborough replicate 5


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 1

characteristic: description

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 1


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 2

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 2


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 3

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 3


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 4

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 4


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 5

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 5


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 6

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 6


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 7

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 7


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 8

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 8


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 9

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 9


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 10

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 10


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 11

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 11


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 12

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 12


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 13

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 13

text: Microbe sample from Nitratidesulfovibrio vulgaris


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 14

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 14


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 15

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 15


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 16

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 16


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 17

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 17


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 18

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 18


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 19

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 19


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 20

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 20


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 21

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 21


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 22

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 22


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 23

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 23


text: Berkeley National Lab

text: live

text: Microbe, viral or environmental

text: Tn5 transposon mutant library for DvH JW710 24

text: laboratory

text: Nitratidesulfovibrio vulgaris

text: cell culture

text: JW710 replicate 24


text: Nanjing Agricultural University

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15829827

characteristic: derived-from

text: Uncultured Candidatus Methanomethylophilus sp. RGIG22

characteristic: environmental sample

text: not collected

characteristic: geo loc name

text: dairy cattle

characteristic: host

characteristic: isolate

text: ruminant gastrointestinal tract

text: not collected

text: gut metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Methanomethylophilus sp.

text: metagenomic assembly

characteristic: sample-type


characteristic: External Id

text: Nanjing Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15829829

text: Uncultured Candidatus Methanomethylophilus sp. RGIG45

text: not collected

text: dairy cattle

text: ruminant gastrointestinal tract

characteristic: isolation source

text: not collected

characteristic: lat lon

text: gut metagenome

text: Methanomethylophilus sp.

characteristic: organism

text: metagenomic assembly

characteristic: title


text: Nanjing Agricultural University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15829826, SAMN15829827, SAMN15829828, SAMN15829829, SAMN15829830, SAMN15829831

text: Uncultured Candidatus Methanomethylophilus sp. RGIG83

characteristic: description

text: not collected

text: dairy cattle

text: ruminant gastrointestinal tract

text: not collected

text: gut metagenome

text: Methanomethylophilus sp.

text: metagenomic assembly


text: Nanjing Agricultural University

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15829844, SAMN15829845, SAMN15829846, SAMN15829847, SAMN15829848, SAMN15829849

characteristic: derived-from

text: Uncultured Candidatus Methanomethylophilus sp. RGIG582

characteristic: environmental sample

text: not collected

characteristic: geo loc name

text: dairy cattle

characteristic: host

characteristic: isolate

text: ruminant gastrointestinal tract

text: not collected

text: gut metagenome

text: Methanomethylophilus sp.

text: metagenomic assembly


characteristic: External Id

text: Faculte de Medecine, Universite Paris-Sud

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: France

text: Homo sapiens

text: Enterobacter pasteurii

text: Pure culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Enterobacter pasteurii


text: Nanjing Agricultural University

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15829880

text: Uncultured Candidatus Methanomethylophilus sp RGIG1176

text: not collected

text: dairy cattle

text: ruminant gastrointestinal tract

characteristic: isolation source

text: not collected

characteristic: lat lon

text: gut metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Methanomethylophilus sp.

characteristic: organism

text: metagenomic assembly

characteristic: sample-type

characteristic: title


text: Nanjing Agricultural University

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15829880, SAMN15829881, SAMN15829882, SAMN15829883, SAMN15829884, SAMN15829885

characteristic: derived-from

text: Uncultured Candidatus Methanomethylophilus sp RGIG1463

characteristic: description

characteristic: environmental sample

text: not collected

text: Dairy cattle

text: ruminant gastrointestinal tract

text: not collected

text: gut metagenome

text: Methanomethylophilus sp.

text: metagenomic assembly


characteristic: External Id

text: Nanjing Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15829887

text: Uncultured Candidatus Methanomethylophilus sp RGIG1506

text: not collected

characteristic: geo loc name

text: goat

characteristic: host

characteristic: isolate

text: ruminant gastrointestinal tract

text: not collected

text: gut metagenome

text: Methanomethylophilus sp.

text: metagenomic assembly


text: Nanjing Agricultural University

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15829991, SAMN15829992, SAMN15829993, SAMN15829994, SAMN15829995

text: Uncultured Candidatus Methanomethylophilus sp. RGIG5058

text: not collected

text: roe deer

text: ruminant gastrointestinal tract

characteristic: isolation source

text: not collected

characteristic: lat lon

text: gut metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Methanomethylophilus sp.

characteristic: organism

text: metagenomic assembly


text: Nanjing Agricultural University

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15830095

text: Uncultured Candidatus Methanomethylophilus sp. RGIG8234

text: not collected

text: water buffalo

text: ruminant gastrointestinal tract

text: not collected

text: gut metagenome

text: Methanomethylophilus sp.

text: metagenomic assembly

characteristic: sample-type

characteristic: title


characteristic: External Id

text: Nanjing Agricultural University

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15830099

characteristic: derived-from

text: Uncultured Candidatus Methanomethylophilus sp. RGIG8423

characteristic: description

characteristic: environmental sample

text: not collected

text: water deer

text: ruminant gastrointestinal tract

text: not collected

text: gut metagenome

text: Methanomethylophilus sp.

text: metagenomic assembly


text: Nanjing Agricultural University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the gut metagenome BioSample: SAMN15830096, SAMN15830097, SAMN15830098, SAMN15830099, SAMN15830100

text: Uncultured Candidatus Methanomethylophilus sp. RGIG8455

text: not collected

characteristic: geo loc name

text: water deer

characteristic: host

characteristic: isolate

text: ruminant gastrointestinal tract

characteristic: isolation source

text: not collected

text: gut metagenome

text: Methanomethylophilus sp.

text: metagenomic assembly


text: CIIMAR

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Blue Biotechnology and Ecotoxicology Culture Collection (LEGE CC), CIIMAR, Portugal

characteristic: biomaterial provider

text: Rui Seabra

characteristic: collected by

text: Portugal: Praia da Luz, Lagos

text: intertidal zone, on green algae

text: Gloeocapsopsis crepidinum LEGE 06123

characteristic: organism

text: unicyanobacterial culture

characteristic: sample type

text: LEGE 06123

characteristic: strain

text: Microbe sample from Gloeocapsopsis crepidinum LEGE 06123

text: reference strain of Protococcus crepidinum

characteristic: type-material


characteristic: External Id

text: FDA-ARGOS Database

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: DSMZ

characteristic: culture collection

text: DSM 21418

text: Germany: Braunschweig

text: Phenotypic and Molecular Methods

characteristic: identification method

text: Aggregatibacter segnis

text: Pathogen: clinical or host-associated sample from Aggregatibacter segnis

characteristic: title

text: type strain of Haemophilus segnis


text: FDA-ARGOS Database

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: DSMZ

text: DSM 7457

characteristic: description

text: Germany: Braunschweig

characteristic: geo loc name

text: Phenotypic and Molecular Methods

text: Anaerococcus vaginalis

text: Pathogen: clinical or host-associated sample from Anaerococcus vaginalis

text: type strain of Peptostreptococcus vaginalis


text: FDA-ARGOS Database

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: DSMZ

characteristic: collected by

text: DSM 10020

text: Germany: Braunschweig

text: Phenotypic and Molecular Methods

text: Peptoniphilus harei

text: Pathogen: clinical or host-associated sample from Peptoniphilus harei

text: type strain of Peptostreptococcus harei


text: FDA-ARGOS Database

text: live

text: Pathogen.cl

text: FDA-Stanford Microbiome Effort

text: ATCC 29149

text: USA:MD

text: Phenotypic and Molecular Methods

text: Mediterraneibacter gnavus

characteristic: organism

characteristic: strain

text: Pathogen: clinical or host-associated sample from Mediterraneibacter gnavus


characteristic: External Id

text: CCRCB, Queen's University Belfast

text: live

text: Generic

text: Homo sapiens

text: Human Pancreatic patient derived xenograft #18269

text: 7 days

characteristic: time

characteristic: treatment


text: CCRCB, Queen's University Belfast

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: 16 days

text: Vehicle treatment


Plant sample from Diabelia_serrata

text: Hainan university

text: live

text: Plant

characteristic: SRA accession

text: not applicable

characteristic: age

text: not applicable

characteristic: ecotype

text: Japan: Tokushima, Anan

text: Diabelia serrata

text: leaf

characteristic: tissue

text: Plant sample from Diabelia serrata


Plant sample from Diabelia_sanguinea

text: Hainan university

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

text: not applicable

text: not applicable

text: Japan: Sendai, Miyagi

text: Diabelia sanguinea

text: leaf

text: Plant sample from Diabelia sanguinea

characteristic: title


name: Plant sample from Diabelia_ionostachya_var_stenophylla

text: Hainan university

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

text: not applicable

text: not applicable

text: Japan: Tanyama, Nagano

text: Diabelia stenophylla

text: leaf

text: Plant sample from Diabelia ionostachya var. stenophylla


Plant sample from Diabelia_serrata_E123

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

characteristic: cultivar

text: not applicable

text: not applicable

text: Japan: Anan, Tokushima

text: not applicable

characteristic: isolate

text: Diabelia serrata

characteristic: organism

text: Leaf

text: Plant sample from Diabelia serrata


name: Plant sample from Diabelia_sanguinea_E301

characteristic: External Id

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Japan: Sendai, Miyagi

text: not applicable

text: Diabelia sanguinea

text: Leaf

text: Plant sample from Diabelia sanguinea


name: Plant sample from Diabelia_ionostachya_stenophylla_E306

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Japan: Tanyama,Nagano

text: not applicable

text: Diabelia stenophylla

text: Leaf

text: Plant sample from Diabelia stenophylla


name: Plant sample from Diabelia_spathulata_spathulata_E198

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Japan: Shiga

text: not applicable

text: Diabelia spathulata var. spathulata

text: Leaf

text: Plant sample from Diabelia spathulata var. spathulata

text: spathulata

characteristic: variety


Plant sample from Abelia_macrotera_E110

text: Hainan university

characteristic: INSDC center name

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Chongqing, Nanchuan

text: not applicable

text: Abelia macrotera

text: Leaf

text: Plant sample from Abelia macrotera


Plant sample from Abelia_uniflora_E51

text: Hainan university

characteristic: INSDC secondary accession

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Fujian, Wuyishan

text: not applicable

text: Abelia uniflora

text: Leaf

text: Plant sample from Abelia uniflora


Plant sample from Abelia_forrestii_E37

text: Hainan university

text: live

text: Plant

characteristic: NCBI submission package

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Yunnan, Wuyishan

text: not applicable

text: Abelia forrestii

text: Leaf

text: Plant sample from Abelia forrestii


name: Plant sample from Abelia_chinensis_ionandra_E30

text: Hainan university

text: live

text: Plant

characteristic: SRA accession

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Taiwan, Yilan

text: not applicable

text: Abelia chinensis var. ionandra

text: Leaf

text: Plant sample from Abelia chinensis var. ionandra

text: ionandra


Plant sample from Abelia_chinensis_E206

text: Hainan university

text: live

text: Plant

text: not applicable

characteristic: age

text: not applicable

text: not applicable

text: not applicable

text: China: Jiangxi, Jujiang

text: not applicable

text: Abelia chinensis

text: Leaf

text: Plant sample from Abelia chinensis


name: Plant sample from Kolkwitzia_amabilis_E9

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

characteristic: ecotype

text: China: Shaanxi, Weinan

text: not applicable

text: Kolkwitzia amabilis

text: Leaf

text: Plant sample from Kolkwitzia amabilis


name: Plant sample from Vesalea_occidentalis_E96

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Mexico: Durango

text: not applicable

text: Vesalea occidentalis

text: Leaf

characteristic: tissue

text: Plant sample from Vesalea occidentalis


Plant sample from Vesalea_mexicana_E93

text: Hainan university

characteristic: INSDC first public

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Mexico: San Luis Potosi

text: not applicable

text: Vesalea mexicana

text: Leaf

text: Plant sample from Vesalea mexicana


Plant sample from Vesalea_coriacea_E89

text: Hainan university

characteristic: INSDC last update

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Mexico: San Luis Potosi

text: Vesalea coriacea

text: Leaf

text: Plant sample from Vesalea coriacea


Plant sample from Vesalea_coriacea_E284

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Mexico: San Luis Potosi

text: Vesalea coriacea

text: Leaf

text: Plant sample from Vesalea coriacea

characteristic: title


name: Plant sample from Vesalea_floribunda_E92

text: Hainan university

text: live

characteristic: INSDC status

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Mexico: San Luis Potosi

text: not applicable

text: Vesalea floribunda

text: Leaf

text: Plant sample from Vesalea floribunda


Plant sample from Linnaea_borealis_E14

text: Hainan university

text: live

text: Plant

characteristic: NCBI submission model

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Xinjiang, Yili

text: Linnaea borealis

text: Leaf

text: Plant sample from Linnaea borealis


Plant sample from Linnaea_borealis_E59

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

characteristic: cultivar

text: not applicable

text: not applicable

text: China: Xinjiang, Yili

text: Linnaea borealis

text: Leaf

text: Plant sample from Linnaea borealis


name: Plant sample from Dipelta_floribunda_E56

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Gansu, Longnan

characteristic: isolate

text: Dipelta floribunda

text: Leaf

text: Plant sample from Dipelta floribunda


name: Plant sample from Dipelta_floribunda_E57

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Gansu, Longnan

text: Dipelta floribunda

characteristic: organism

text: Leaf

text: Plant sample from Dipelta floribunda


name: Plant sample from Dipelta_floribunda_E55

characteristic: External Id

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Gansu, Longnan

text: Dipelta floribunda

text: Leaf

text: Plant sample from Dipelta floribunda


name: Plant sample from Scabiosa_canescens_E223

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Belgium: Espe

text: not applicable

text: Scabiosa canescens

text: Leaf

text: Plant sample from Scabiosa canescens


name: Plant sample from Scabiosa_tschiliensis_E21

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Beijing

text: not applicable

text: Scabiosa tschiliensis

text: Leaf

text: Plant sample from Scabiosa tschiliensis


name: Plant sample from Dipsacus_japonicus_E23

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Beijing

text: not applicable

text: Dipsacus japonicus

text: Leaf

text: Plant sample from Dipsacus japonicus


name: Plant sample from Valeriana_officinalis_E27

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Hebei, Baoding

text: not applicable

text: Valeriana officinalis

text: Leaf

text: Plant sample from Valeriana officinalis


name: Plant sample from Centranthus_ruber_E220

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: USA: California

text: not applicable

text: Centranthus ruber

text: Leaf

text: Plant sample from Centranthus ruber


name: Plant sample from Valerianella_dentata_E217

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: USA: Tennessee

text: not applicable

text: Valerianella dentata

text: Leaf

text: Plant sample from Valerianella dentata


Plant sample from Zabelia_biflora_E100

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Tajikistan: Dushanbe

text: not applicable

text: Zabelia biflora

text: Leaf

text: Plant sample from Zabelia biflora


name: Plant sample from Zabelia_integrifolia_E15

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Japan: Kyushu

text: not applicable

text: Zabelia integrifolia

text: Leaf

text: Plant sample from Zabelia integrifolia


Plant sample from Zabelia_dielsii_E108

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Sichuan, Ganzi

text: Zabelia dielsii

text: Leaf

text: Plant sample from Zabelia dielsii


Plant sample from Zabelia_dielsii_E286

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Sichuan, Ganzi

text: Zabelia dielsii

text: Leaf

text: Plant sample from Zabelia dielsii


Plant sample from Zabelia_triflora_E276

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: India: Bangalore

text: not applicable

text: Zabelia triflora

text: Leaf

text: Plant sample from Zabelia triflora


Plant sample from Morina_longifolia_E20

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Tajikistan: Dushanbe

text: not applicable

text: Morina longifolia

text: Leaf

text: Plant sample from Morina longifolia


Plant sample from Acanthocalyx_alba_E19

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Yunnan

text: not applicable

text: Acanthocalyx alba

text: Leaf

text: Plant sample from Acanthocalyx alba


name: Plant sample from Lonicera_korolkowii_E212

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Hebei, Baoding

text: not applicable

text: Lonicera korolkowii

text: Leaf

text: Plant sample from Lonicera korolkowii


name: Plant sample from Sambucus_williamsii_E208

text: Hainan university

text: live

text: Plant

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: China: Beijing

text: not applicable

text: Sambucus williamsii

text: Leaf

text: Plant sample from Sambucus williamsii


text: Chinese Academy of Tropical Agricultural Sciences

text: live

text: Plant

text: 2 years

text: China: Guizhou

text: Blumea balsamifera

text: flower

text: Plant sample from Blumea balsamifera


text: live

text: Plant

text: 2 years

text: China: Guizhou

text: Blumea balsamifera

text: flower

text: Plant sample from Blumea balsamifera


text: live

text: Plant

text: 2 years

text: China: Guizhou

text: Blumea balsamifera

text: leaf

text: Plant sample from Blumea balsamifera


text: live

text: Plant

text: 2 years

text: China: Guizhou

text: Blumea balsamifera

text: leaf

text: Plant sample from Blumea balsamifera


Rp development

text: Nankai university

text: live

text: Invertebrate

text: Beans

characteristic: breed

text: China: Tianjin

text: Wenjun Bu

characteristic: host

text: The soybean bug, Riptortus pedestris (Fabricius 1775) (Hemiptera: Alydidae), is one of the most important pests in soybean crops and is widely distributed in Asian regions

text: Nankai University

text: Riptortus pedestris

text: all body

text: Invertebrate sample from Riptortus pedestris


text: Aalborg University

characteristic: INSDC center name

text: live

text: MIMAG.wastewater

characteristic: collection date

text: This BioSample is a metagenomic assembly obtained from the Fred_18-Q3-R57-64 activated sludge metagenome BioSample: SAMN14825693.

characteristic: derived-from

text: This BioSample is a metagenomic assembly obtained from the Fred_18-Q3-R57-64 metagenome BioSample: SAMN14825693.

characteristic: description

text: aquatic biome [ENVO:00002030]

text: Waste Water [ENVO:00002001]

text: Activated Sludge [ENVO:00002046]

characteristic: environmental sample

text: Denmark: Fredericia

characteristic: geo loc name

text: activated sludge from Fred_18-Q3-R57-64

characteristic: isolation source

text: 55.552368 N 9.720404 E

characteristic: lat lon

text: activated sludge metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Accumulibacter sp.

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Accumulibacter sp.


text: Aalborg University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.wastewater

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: This BioSample is a metagenomic assembly obtained from the Hade_18-Q3-R52-61 activated sludge metagenome BioSample: SAMN14825696.

text: This BioSample is a metagenomic assembly obtained from the Hade_18-Q3-R52-61 metagenome BioSample: SAMN14825696.

text: aquatic biome [ENVO:00002030]

text: Waste Water [ENVO:00002001]

text: Activated Sludge [ENVO:00002046]

text: Denmark: Haderslev

text: activated sludge from Hade_18-Q3-R52-61

text: 55.249786 N 9.508609 E

text: activated sludge metagenome

text: Accumulibacter sp.

text: metagenomic assembly

characteristic: title


characteristic: External Id

text: Academia Sinica

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Plant

characteristic: cultivar

text: vegetative

text: Taiwan: WorldVeg, Tainan

text: Solanum lycopersicum

characteristic: organism

text: leaf

characteristic: tissue

text: Solanum lycopersicum CA4


text: Academia Sinica

text: live

text: Plant

text: vegetative

text: Taiwan: WorldVeg, Tainan

text: Solanum lycopersicum

text: leaf

text: Solanum lycopersicum CLN1621L


name: Plant sample from Valeriana_urticifolia_E219

text: Hainan university

text: live

text: Plant

text: not applicable

characteristic: age

text: not applicable

text: not applicable

characteristic: ecotype

text: Mexico:Vera Cruz

text: Valeriana urticifolia

text: leaf

text: Plant sample from Valeriana urticifolia


Guava (Psidium guajava) young root

text: ICAR-CISH

text: live

text: Plant

text: Lalith

text: Root Transcriptome of control plant

characteristic: description

text: Young root

text: India

text: Psidium guajava

text: Young root

text: Root transcriptome of guava ( Psidium guajava cv. Lalith)


Poseidonia sp. BS301-5m-G56

text: Evolutionary Genomics Group

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: 5 m

characteristic: depth

text: This BioSample is a metagenomic assembly obtained from the aquatic metagenome BioSample: SAMN15249239

characteristic: derived-from

characteristic: environmental sample

text: Bulgaria: Black Sea

characteristic: geo loc name

characteristic: isolate

text: Brackish water, Black Sea St. 301

characteristic: isolation source

text: 43.155517 N 28.005383 E

characteristic: lat lon

text: aquatic metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Poseidonia sp.

text: Metagenomic assembly

characteristic: sample type

text: Poseidonia sp. BS301-5m-G56


Poseidonia sp. BS301-5m-G57

characteristic: External Id

text: Evolutionary Genomics Group

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 5 m

text: Bulgaria: Black Sea

text: Brackish water, Black Sea St. 301

text: 43.155517 N 28.005383 E

text: aquatic metagenome

text: Poseidonia sp.

text: Metagenomic assembly

text: Poseidonia sp. BS301-5m-G57

characteristic: title


Poseidonia sp. BS301-5m-G58

text: Evolutionary Genomics Group

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: 5 m

characteristic: depth

characteristic: derived-from

characteristic: environmental sample

text: Bulgaria: Black Sea

text: Brackish water, Black Sea St. 301

text: 43.155517 N 28.005383 E

text: aquatic metagenome

text: Poseidonia sp.

characteristic: organism

text: Metagenomic assembly

text: Poseidonia sp. BS301-5m-G58


Poseidonia sp. BS307-5m-G40

text: Evolutionary Genomics Group

text: live

text: Microbe, viral or environmental

text: 5 m

text: This BioSample is a metagenomic assembly obtained from the aquatic metagenome BioSample: SAMN15249240

text: Bulgaria: Black Sea

characteristic: geo loc name

characteristic: isolate

text: Brackish water, Black Sea St. 307

characteristic: isolation source

text: 43.155517 N 28.005383 E

characteristic: lat lon

text: aquatic metagenome

characteristic: metagenome source

text: Poseidonia sp.

text: Metagenomic assembly

text: Poseidonia sp. BS307-5m-G40


Candidatus Poseidonia sp. BS30m-G34

characteristic: External Id

text: Evolutionary Genomics Group

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: 30 m

text: This BioSample is a metagenomic assembly obtained from the aquatic metagenome BioSample: SAMN15249241

text: Bulgaria: Black Sea

text: Brackish water, Black Sea St. 307

text: 43.155517 N 28.005383 E

text: aquatic metagenome

characteristic: metagenomic

text: Poseidonia sp.

text: Metagenomic assembly

characteristic: sample type

text: Candidatus Poseidonia sp. BS30m-G34


Candidatus Poseidonia sp. BS30m-G38

text: Evolutionary Genomics Group

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 30 m

text: Bulgaria: Black Sea

text: Brackish water, Black Sea St. 307

text: 43.155517 N 28.005383 E

text: aquatic metagenome

text: Poseidonia sp.

text: Metagenomic assembly

text: Candidatus Poseidonia sp. BS30m-G38


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMB

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Metagenomics

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Tumor sample from a human female participant in the dbGaP study Systematic Analysis of Transcription Program Regulation by Transcription Factor EB (TFEB)

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: HMB

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Metagenomics

text: Systematic Analysis of Transcription Program Regulation by Transcription Factor EB (TFEB)


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: TFEBKO_0EE_cytoTFEB_Salmonella_6hrs_c_S21_R1_001

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: biospecimen repository

text: TFEBKO_0EE_cytoTFEB_Salmonella_6hrs_b_S20_R1_001

characteristic: biospecimen repository sample id

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics


text: dbGaP

text: live

text: Generic

text: TFEBKO_0EE_TFEB_Salmonella_6hrs_c_S18_R1_001

text: HMB

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Metagenomics

characteristic: study design

characteristic: study name


text: dbGaP

text: live

text: Generic

text: TFEBKO_0EE_TFEB_Salmonella_6hrs_a_S16_R1_001

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: TFEBKO_0EE_ev_Salmonella_6hrs_b_S14_R1_001

text: HMB

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Metagenomics


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: TFEBKO_0EE_nucTFEB_Salmonella_6hrs_b_S23_R1_001

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: biospecimen repository

text: TFEBKO_0EE_ev_Salmonella_6hrs_c_S15_R1_001

characteristic: biospecimen repository sample id

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics


text: dbGaP

text: live

text: Generic

text: TFEBKO_0EE_ev_Salmonella_6hrs_a_S13_R1_001

text: HMB

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Metagenomics

characteristic: study design

characteristic: study name


text: dbGaP

text: live

text: Generic

text: TFEBKO_0EE_nucTFEB_Salmonella_6hrs_a_S22_R1_001

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: TFEBKO_0EE_cytoTFEB_torin_6hrs_b_S47_R1_001

text: HMB

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Metagenomics


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: TFEBKO_0EE_cytoTFEB_torin_6hrs_c_S48_R1_001

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: biospecimen repository

text: TFEBKO_0EE_TFEB_Salmonella_6hrs_b_S17_R1_001

characteristic: biospecimen repository sample id

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics


text: dbGaP

text: live

text: Generic

text: TFEBKO_0EE_nucTFEB_torin_6hrs_b_S68_R1_001

text: HMB

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Metagenomics

characteristic: study design

characteristic: study name


text: dbGaP

text: live

text: Generic

text: TFEBKO_0EE_nucTFEB_Salmonella_6hrs_c_S24_R1_001

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: TFEBKO_0EE_cytoTFEB_torin_6hrs_a_S46_R1_001

text: HMB

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Metagenomics


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: TFEBKO_0EE_nucTFEB_torin_6hrs_a_S67_R1_001

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics

text: Tumor sample from a human female participant in the dbGaP study Systematic Analysis of Transcription Program Regulation by Transcription Factor EB (TFEB)


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMB

text: Yes

text: Homo sapiens

text: female

text: Metagenomics

text: Systematic Analysis of Transcription Program Regulation by Transcription Factor EB (TFEB)


text: dbGaP

text: live

text: Generic

text: TFEBKO_0EE_nucTFEB_torin_6hrs_c_S69_R1_001

text: HMB

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Metagenomics

characteristic: study design

characteristic: study name


text: University of Oklahoma

text: live

text: MIGS.ba

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: mutant lacking uracil phosphoribosyltransferase; 5-fluorouracil resistant

text: cell culture

text: USA: Missouri

characteristic: geo loc name

text: PMID: 19837844;

text: 38.945163 N 92.322438 W

characteristic: lat lon

text: Nitratidesulfovibrio vulgaris

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Nitratidesulfovibrio vulgaris

characteristic: title


Arcticiflavibacter luteus

characteristic: External Id

text: Shandong Univesity

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Arctic Ocean

text: intertidal sandy sediment

characteristic: isolation source

text: Psychroserpens luteus

characteristic: organism

text: whole organism

characteristic: sample type

text: Microbe sample from Psychroserpens luteus

text: type strain of Arcticiflavibacter luteus

characteristic: type material


text: Institute of Zoology, Chinese Academy of Sciences

characteristic: INSDC secondary accession

text: live

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: China: Beijing

text: solitarious locusts

characteristic: isolate

text: Beijing

text: Locusta migratoria

text: the ovariolar tips from solitarious female locusts

characteristic: tissue

text: Invertebrate sample from Locusta migratoria


IgG-rabbit-sRNAs

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria


IgG-mouse-sRNA

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria


S follicle cells-3

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria

text: follicle cells from solitarious female locusts


S follicle cells-2

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria


S follicle cells-1

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria


G follicle cells-3

text: live

text: Invertebrate

text: China: Beijing

text: gregarious locusts

text: Beijing

text: Locusta migratoria

text: follicle cells from gregarious female locusts


G follicle cells-2

text: live

text: Invertebrate

text: China: Beijing

text: gregarious locusts

text: Beijing

text: Locusta migratoria


G follicle cells-1

text: live

text: Invertebrate

text: China: Beijing

text: gregarious locusts

text: Beijing

text: Locusta migratoria


S ovariolar tips-3

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria

text: ovariolar tips from solitarious female locusts


S ovariolar tips-2

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria


S ovariolar tips-1

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria


G ovariolar tips-3

text: live

text: Invertebrate

text: China: Beijing

text: gregarious locusts

text: Beijing

text: Locusta migratoria

text: ovariolar tips from gregarious female locusts


G ovariolar tips-2

text: live

text: Invertebrate

text: China: Beijing

text: gregarious locusts

text: Beijing

text: Locusta migratoria


G ovariolar tips-1

text: live

text: Invertebrate

text: China: Beijing

text: gregarious locusts

text: Beijing

text: Locusta migratoria


S terminal oocytes-3

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria

text: ternimal oocytes from solitarious female locusts


S terminal oocytes-2

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria


S terminal oocytes-1

text: live

text: Invertebrate

text: China: Beijing

text: solitarious locusts

text: Beijing

text: Locusta migratoria


G terminal oocytes-3

text: live

text: Invertebrate

text: China: Beijing

text: gregarious locust

text: Beijing

text: Locusta migratoria

text: ternimal oocytes from female gregarious locusts


G oocytes small RNAs-2

text: live

text: Invertebrate

text: China: Beijing

text: gregarious locust

text: Beijing

text: Locusta migratoria

text: oocytes from gregarious female locusts


G terminal oocytes small RNAs

text: live

text: Invertebrate

text: China: Beijing

text: gregarious locust

text: Beijing

text: Locusta migratoria

text: terminal oocytes of gregarious female locusts


text: Kuwait Institute for Scientific Research

text: live

text: Plant

text: mature

characteristic: age

text: Rimth

characteristic: cultivar

characteristic: ecotype

text: Kuwait

text: Landraces

text: Haloxylon salicornicum

text: leaves

text: Plant sample from Haloxylon salicornicum


characteristic: External Id

characteristic: FishSampleID

text: Aberystwyth University

characteristic: INSDC center name

text: live

text: Model organism or animal

text: Juvenile

text: Silver

characteristic: breed

text: infected

characteristic: disease

text: Oreochromis niloticus

text: Unknown

characteristic: sex

text: Skin

text: Model organism or animal sample from Oreochromis niloticus

characteristic: title


text: Aberystwyth University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: Juvenile

text: Silver

text: control

text: Oreochromis niloticus

characteristic: organism

text: Unknown

text: Skin


text: UW-Madison

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: USA: Madison, Wisconsin

characteristic: geo loc name

text: NRRL collection

characteristic: isolation source

text: Babjeviella inositovora

text: cell culture

characteristic: sample type

text: NRRL Y-12698

characteristic: strain

text: Microbe sample from Babjeviella inositovora

text: culture from type material of Pichia inositovora

characteristic: type-material


characteristic: External Id

text: UW-Madison

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: USA: Madison, Wisconsin

text: NRRL collection

text: Hyphopichia burtonii

text: cell culture

text: NRRL Y-1933

text: Microbe sample from Hyphopichia burtonii

text: culture from type material of Pichia burtonii


text: UW-Madison

text: live

text: Microbe, viral or environmental

text: USA: Madison, Wisconsin

text: NRRL collection

text: Cyberlindnera fabianii

text: cell culture

text: NRRL Y-1871

text: Microbe sample from Cyberlindnera fabianii

characteristic: title

text: type material of Hansenula fabianii


text: UW-Madison

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: USA: Madison, Wisconsin

text: NRRL collection

text: Wickerhamomyces ciferrii

text: cell culture

text: NRRL Y-1031

text: Microbe sample from Wickerhamomyces ciferrii

text: type material of Hansenula ciferrii


NML 97-1090

text: Public Health Agency of Canada - National Microbiology Laboratory

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: Ontario Public Health Laboratory

text: Canada: Ontario

text: Homo sapiens

characteristic: host

text: Human

text: gastroenteritis

text: male

text: stool

text: Missing

text: Helicobacter winghamensis ATCC BAA-430

text: ATCC BAA-430

text: Pathogen: clinical or host-associated sample from Helicobacter winghamensis ATCC BAA-430

text: type strain of Helicobacter winghamensis


NML 97-1611

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Alberta Public Health Laboratory

text: Canada: Alberta

text: Homo sapiens

text: Human

text: gastroenteritis

text: female

text: Monoisolate

characteristic: isolate

text: stool

text: Missing

text: Helicobacter winghamensis

characteristic: organism

text: ATCC BAA-431

text: Pathogen: clinical or host-associated sample from Helicobacter winghamensis


NML 98-2020

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Ontario Public Health Laboratory

text: Canada: Ontario

text: Homo sapiens

text: Human

text: gastroenteritis

text: female

text: Monoisolate

text: stool

text: Missing

text: Helicobacter winghamensis

text: ATCC BAA-434


NML 98-2021

text: live

text: Pathogen.cl

characteristic: SRA accession

text: Ontario Public Health Laboratory

text: Canada: Ontario

text: Homo sapiens

text: Human

text: gastroenteritis

text: female

text: Monoisolate

text: stool

text: Missing

text: Helicobacter winghamensis

text: ATCC BAA-435


NML 99-4873

text: live

text: Pathogen.cl

text: Cadham Provincial Laboratory

text: Canada: Manitoba

text: Homo sapiens

text: Human

text: gastroenteritis

text: male

text: Monoisolate

text: stool

text: Missing

text: Helicobacter winghamensis

text: DSM 111488


NML 18-7711

text: live

text: Pathogen.cl

text: Alberta Public Health Laboratory

text: Canada: Alberta

text: Homo sapiens

text: Human

text: gastroenteritis

text: male

text: Monoisolate

text: stool

text: Missing

text: Helicobacter winghamensis

text: DoED 18-7711


NML 19-2049

text: live

text: Pathogen.cl

text: Alberta Public Health Laboratory

text: Canada: Alberta

text: Homo sapiens

text: Human

text: gastroenteritis

text: male

text: Monoisolate

text: stool

text: Missing

text: Helicobacter winghamensis

text: DoED 19-02049