I. 32

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: female

text: 24.7130 N 46.6213 E

text: human gut metagenome


I. 33

status: PUBLIC

characteristic: External Id

text: Princess Nourah university

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

characteristic: host

text: Crohn's Disease

text: male

text: 24.7130 N 46.6213 E

text: human gut metagenome

characteristic: organism

text: MIMARKS Survey related sample from human gut metagenome

characteristic: title


I. 34

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: male

text: 24.7130 N 46.6213 E

text: human gut metagenome


I. 35

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: male

text: 24.7130 N 46.6213 E

text: human gut metagenome


I. 36

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: male

text: 24.7130 N 46.6213 E

text: human gut metagenome


I. 37

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: female

text: 24.7130 N 46.6213 E

text: human gut metagenome


I. 39

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: male

text: 24.7130 N 46.6213 E

text: human gut metagenome


I. 40

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: male

text: 24.7130 N 46.6213 E

text: human gut metagenome


I. 41

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: female

text: 24.7130 N 46.6213 E

text: human gut metagenome


I. 42

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: female

text: 24.7130 N 46.6213 E

text: human gut metagenome


i. 43

text: Princess Nourah university

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: female

text: 24.7130 N 46.6213 E

text: human gut metagenome


text: Southwest Minzu University

text: live

text: Model organism or animal

text: Embryonic 10

characteristic: age

text: Daheng broiler

characteristic: breed

text: Embryo

text: China

text: Gallus gallus

text: male

characteristic: sex

text: leg musculatures

characteristic: tissue

text: Model organism or animal sample from Gallus gallus


characteristic: External Id

text: Southwest Minzu University

text: live

text: Model organism or animal

text: Embryonic 14

text: Daheng broiler

text: Embryo

text: China

text: Gallus gallus

text: male

text: leg musculatures


text: Princess Nourah university

characteristic: INSDC center name

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: male

text: 24.7130 N 46.6213 E

text: human gut metagenome

text: active group


text: Princess Nourah university

characteristic: INSDC first public

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Stool

text: not applicable

text: Human Gut

text: IBD

text: Saudi Arabia

text: Homo sapiens

text: Crohn's Disease

text: female

text: 24.7130 N 46.6213 E

text: human gut metagenome

text: active group


text: National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention

characteristic: INSDC last update

text: live

text: Model organism or animal

text: SD

text: China

text: Rattus norvegicus

text: female

text: brain

text: brain sample from Rattus norvegicus


text: Southwest Minzu University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Embryonic 18

text: Daheng broiler

text: Embryo

text: China

text: Gallus gallus

text: male

text: leg muscluature


text: Southwest Minzu University

text: live

characteristic: INSDC status

text: Model organism or animal

text: Embryonic 10

text: Tibetan chicken

text: Embryo

text: China

text: Gallus gallus

text: male

text: leg muscluature


text: Southwest Minzu University

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: Embryonic 14

text: Tibetan chicken

text: Embryo

text: China

text: Gallus gallus

text: male

text: leg muscluature


text: Southwest Minzu University

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: Embryonic 18

text: Tibetan chicken

text: Embryo

text: China

text: Gallus gallus

text: male

text: leg muscluature


text: live

text: Model organism or animal

characteristic: SRA accession

text: SD

text: China

text: Rattus norvegicus

text: female

text: brain

text: brain sample from Rattus norvegicus


Brassica napus

text: Shiraz University

text: live

text: Plant

text: Cultivars

characteristic: description

text: Leaf

text: Zafar

characteristic: ecotype

text: Iran

text: Brassica napus

text: Leaf

text: Plant sample from Brassica napus


text: Nanjing Forestry University

text: live

text: Metagenome or environmental

text: China:Nanjing

text: not applicable

characteristic: host

text: soil

text: not collected

text: soil metagenome

characteristic: organism

text: Metagenome or environmental sample from soil metagenome


Dumping site metagenome 3

text: UNIVERSITY OF GOUR BANGA

text: live

text: MIMARKS.survey

text: 25 cm

characteristic: depth

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 17 meter

characteristic: elev

text: Dumping site metagenome

text: River bank site

text: waste associated soil

text: India: Mahananda River Bank, Malda, West Bengal

text: 25.0119 N 88.1433 E

text: soil metagenome

characteristic: title


HS-R

text: Al Ain University

text: live

text: Metagenome or environmental

text: United Arab Emirates

text: Halocnemum strobilaceum (R)

text: Rhizosphere Bacteria-HS

text: 25.08 N 55.29 E

text: plant metagenome

text: Metagenome or environmental sample from plant metagenome


PT-R

text: Al Ain University

text: live

text: Metagenome or environmental

text: United Arab Emirates

text: Panicum turgidum (R)

text: Rhizosphere Bacteria-PT

text: 25.04 N 55.47 E

text: plant metagenome


HP-R

text: Al Ain University

text: live

text: Metagenome or environmental

text: United Arab Emirates

text: Haloxylon persicum (R)

text: Rhizosphere Bacteria-HP

text: 25.39 N 55.55 E

text: plant metagenome


AH-R

text: Al Ain University

text: live

text: Metagenome or environmental

text: United Arab Emirates

text: Arnebia hispidissima (R)

text: Rhizosphere Bacteria-AH

text: 25.12 N 55.55 E

text: plant metagenome


HS-E

text: Al Ain University

text: live

text: Metagenome or environmental

text: United Arab Emirates

text: Halocnemum strobilaceum (E)

text: Endoosphere Bacteria-HS

text: 25.09 N 55.30 E

text: plant metagenome


PT-E

text: Al Ain University

text: live

text: Metagenome or environmental

text: United Arab Emirates

text: Panicum turgidum (E)

text: Endosphere Bacteria-PT

text: 25.03 N 55.47 E

text: plant metagenome


HP-E

text: Al Ain University

text: live

text: Metagenome or environmental

text: United Arab Emirates

text: Haloxylon persicum (E)

text: Endosphere Bacteria-HP

text: 25.40 N 55.59 E

text: plant metagenome


AH-E

text: Al Ain University

text: live

text: Metagenome or environmental

text: United Arab Emirates

text: Arnebia hispidissima (E)

text: Endosphere Bacteria-AH

text: 25.11 N 55.57 E

text: plant metagenome


text: College of Agronomy,Yunnan Urban Agricultural Engineering and Technological Research Center

text: live

text: Metagenome or environmental

text: China: Kunming

text: Amorphophallus konjac

text: not applicable

text: not applicable

text: plant metagenome


text: Ocean University of China

text: live

text: Metagenome or environmental

text: missing

text: Apostichopus japonicus

text: missing

text: invertebrate metagenome

characteristic: tmp


characteristic: External Id

text: Yunnan Forestry Technological College

text: live

text: Plant

text: three years old

characteristic: age

text: clone YT

characteristic: cultivar

text: anthesis

text: not collected

text: China:Yunnan

text: not collected

characteristic: isolate

text: Musella lasiocarpa

text: Biological replicate 1

characteristic: replicate

text: Tissue sample

text: bract

characteristic: tissue

text: Plant sample from Musella lasiocarpa


text: Yunnan Forestry Technological College

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

text: three years old

text: clone YT

text: anthesis

text: not collected

text: China:Yunnan

text: not collected

text: Musella lasiocarpa

text: Biological replicate 2

text: Tissue sample

text: bract

text: Plant sample from Musella lasiocarpa


text: Yunnan Forestry Technological College

text: live

text: Plant

characteristic: NCBI submission package

characteristic: SRA accession

text: three years old

text: clone YT

text: anthesis

text: not collected

characteristic: ecotype

text: China:Yunnan

text: not collected

text: Musella lasiocarpa

characteristic: organism

text: Biological replicate 3

text: Tissue sample

text: bract

text: Plant sample from Musella lasiocarpa


text: Yunnan Forestry Technological College

text: live

text: Plant

text: three years old

text: clone RD

text: anthesis

text: not collected

text: China:Yunnan

text: not collected

text: Musella lasiocarpa

text: Biological replicate 1

text: Tissue sample

text: bract

text: Plant sample from Musella lasiocarpa

characteristic: title


characteristic: External Id

text: Yunnan Forestry Technological College

text: live

text: Plant

text: three years old

text: clone RD

text: anthesis

text: not collected

text: China:Yunnan

text: not collected

text: Musella lasiocarpa

text: Biological replicate 2

text: Tissue sample

text: bract

text: Plant sample from Musella lasiocarpa


text: Yunnan Forestry Technological College

text: live

text: Plant

text: three years old

characteristic: age

text: clone RD

text: anthesis

text: not collected

text: China:Yunnan

text: not collected

text: Musella lasiocarpa

text: Biological replicate 3

text: Tissue sample

text: bract

text: Plant sample from Musella lasiocarpa


text: Peking University

text: live

text: Model organism or animal

text: 8 weeks

text: Stereo-seq of mouse endometrium at E6.5, rep1 and E7.5, rep2

characteristic: description

text: China

text: Mus musculus

text: female

characteristic: sex

text: ICR

characteristic: strain

text: Endometrium


text: Peking University

text: live

text: Model organism or animal

text: 8 weeks

text: Stereo-seq of mouse endometrium at E6.5, rep2 and E7.5, rep1

text: China

text: Mus musculus

text: female

text: ICR

text: Endometrium

characteristic: tissue


text: Peking University

characteristic: INSDC center name

text: live

text: Model organism or animal

text: 8 weeks

text: Stereo-seq of mouse endometrium at E8.5, rep1

text: China

text: Mus musculus

text: female

text: ICR

text: Endometrium


text: Peking University

characteristic: INSDC first public

text: live

text: Model organism or animal

text: 8 weeks

text: Stereo-seq of mouse endometrium at E9.5

text: China

text: Stereo-seq of mouse endometrium at E9.5

text: Mus musculus

text: female

text: ICR

text: Endometrium

text: Stereo-seq of mouse endometrium at E9.5


text: Peking University

characteristic: INSDC last update

text: live

text: Model organism or animal

text: 10 weeks

text: Stereo-seq of CBA/J mouse endometrium at E8.5

text: China

text: Mus musculus

text: female

text: CBA/J

text: Endometrium


text: Peking University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: 10 weeks

text: Stereo-seq of CBA/J mouse endometrium at E9.5, rep1

text: China

text: Mus musculus

text: female

text: CBA/J

text: Endometrium


text: Peking University

text: live

characteristic: INSDC status

text: Model organism or animal

text: 10 weeks

text: Stereo-seq of CBA/J mouse endometrium at E9.5, rep2

text: China

text: Mus musculus

text: female

text: CBA/J

text: Endometrium


text: Kyungpook National University

text: live

text: Plant

characteristic: NCBI submission model

text: 1 day old

text: Protoplast

text: Scarlet

characteristic: cultivar

text: South Korea

text: Protoplast pool

characteristic: isolate

text: Dianthus caryophyllus

text: Protoplast

text: Plant sample from Dianthus caryophyllus


text: State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: preimplantation embryos

characteristic: cell type

text: missing

text: missing

text: Mus musculus

text: preimplantation embryos

text: DBA/2J x C57BL/6J

text: preimplantation embryos

text: HIT-scISOseq Run4, scRNAseq


characteristic: External Id

text: live

text: Generic

text: preimplantation embryos

text: missing

text: missing

text: Mus musculus

characteristic: organism

text: preimplantation embryos

text: DBA/2J x C57BL/6J

text: preimplantation embryos

text: HIT-scISOseq Run3, scRNAseq

characteristic: title


text: live

text: Generic

text: preimplantation embryos

text: missing

text: missing

text: Mus musculus

text: preimplantation embryos

text: DBA/2J x C57BL/6J

text: preimplantation embryos

text: HIT-scISOseq Run2, scRNAseq


text: live

text: Generic

text: preimplantation embryos

text: missing

text: missing

text: Mus musculus

text: preimplantation embryos

text: DBA/2J x C57BL/6J

text: preimplantation embryos

text: HIT-scISOseq Run1, scRNAseq


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

characteristic: host

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 1 of 7


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 2 of 7


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 3 of 7


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 4 of 7


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 5 of 7


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 6 of 7


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 7 of 7


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 1 of 5


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 2 of 5


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 3 of 5


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 4 of 5


text: Ghent University

text: live

text: Invertebrate

text: Belgium: Ghent

text: not applicable

text: Phytoseiulus persimilis

text: whole body

text: Total RNA Phytoseiulus persimilis: replicate 5 of 5


Lamprobacter sp. SM2E

text: Bellevue University

text: live

text: Microbe, viral or environmental

text: Dr. John Kyndt

text: This BioSample is a metagenomic assembly obtained from the salt marsh metagenome BioSample: SAMN18321786

characteristic: derived-from

text: salt marsh

characteristic: environmental-sample

text: USA: Nebraska

text: inland salt marsh

text: 40.88 N 96.66 W

text: salt marsh metagenome

characteristic: metagenome-source

characteristic: metagenomic

text: Lamprobacter sp.

text: metagenomic assembly

characteristic: sample-type

text: Microbe sample from Lamprobacter sp.


text: MIT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: USA: Boston

text: Homo sapiens

text: not applicable

text: not applicable

text: 43.36 N 71.06 W

text: human gut metagenome

text: Single cell

characteristic: strain


text: Kampmann, Institute of Neurodegenerative Disease, University of California, San Francisco

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: AICS-0090 cl.391

characteristic: cell line

text: neural progenitor cells

text: missing

characteristic: differentiation day

text: missing

text: Homo sapiens

text: brain

text: brain

characteristic: tissue

text: Day 4, Replicate 3, CROP

text: CRISPRi

characteristic: treatment


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: AICS-0090 cl.391

text: neural progenitor cells

characteristic: cell type

text: missing

text: missing

text: Homo sapiens

characteristic: organism

text: brain

text: brain

text: Day 4, Replicate 2, CROP

characteristic: title

text: CRISPRi


characteristic: INSDC center name

text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 4, Replicate 1, CROP

text: CRISPRi


characteristic: INSDC first public

text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 4, Replicate 3, 10X

text: CRISPRi


characteristic: INSDC last update

text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 4, Replicate 2, 10X

text: CRISPRi


characteristic: INSDC secondary accession

text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 4, Replicate 1, 10X

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 2, Replicate 3, CROP

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 2, Replicate 2, CROP

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 2, Replicate 1, CROP

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 2, Replicate 3, 10X

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 2, Replicate 2, 10X

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 2, Replicate 1, 10X

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 0, Replicate 3, CROP

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 0, Replicate 2, CROP

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 0, Replicate 1, CROP

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 0, Replicate 3, 10X

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 0, Replicate 2, 10X

text: CRISPRi


text: live

text: Generic

text: AICS-0090 cl.391

text: neural progenitor cells

text: missing

text: missing

text: Homo sapiens

text: brain

text: brain

text: Day 0, Replicate 1, 10X

text: CRISPRi


text: Brigham and Women's Hospital

text: live

text: Model organism or animal

characteristic: age

characteristic: breed

characteristic: cultivar

characteristic: ecotype

text: USA: Massachusetts

characteristic: isolate

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Brain

text: Sham Normal Diet (ND) biological replicate #1


text: Brigham and Women's Hospital

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

characteristic: tissue

text: Sham Normal Diet (ND) biological replicate #2


characteristic: External Id

text: Brigham and Women's Hospital

text: live

text: Model organism or animal

characteristic: SRA accession

text: USA: Massachusetts

text: Mus musculus

characteristic: organism

text: male

text: Brain

text: Sham Normal Diet (ND) biological replicate #3


text: Brigham and Women's Hospital

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

text: Sham Normal Diet (ND) biological replicate #4

characteristic: title


text: Brigham and Women's Hospital

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: age

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

text: Sham Normal Diet (ND) biological replicate #5


text: Brigham and Women's Hospital

text: live

text: Model organism or animal

characteristic: breed

characteristic: cultivar

characteristic: ecotype

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

text: Sham High Salt Diet (HSD) biological replicate #1


text: Brigham and Women's Hospital

text: live

text: Model organism or animal

text: USA: Massachusetts

characteristic: isolate

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Brain

text: Sham High Salt Diet (HSD) biological replicate #2


text: Gastrointestinal Bacteria Reference Unit, Public Health England

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: PHE

text: United Kingdom: United Kingdom

text: Homo sapiens

characteristic: host

text: Not available

text: human

text: Missing

text: Yersinia enterocolitica

text: Yersinia bercovieri ATCC 43970

text: Yersinia enterocolitica

characteristic: serovar

text: Yersinia enterocolitica serovar Yersinia enterocolitica 01331501


characteristic: External Id

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: SRA accession

text: PHE

text: United Kingdom: United Kingdom

text: Homo sapiens

text: Not available

text: human

text: Missing

text: Yersinia enterocolitica

characteristic: organism

text: None detected

text: Yersinia enterocolitica

text: Yersinia enterocolitica serovar Yersinia enterocolitica 01342809


text: Brigham and Women's Hospital

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

characteristic: tissue

text: Sham High Salt Diet (HSD) biological replicate #3

characteristic: title


text: Brigham and Women's Hospital

text: live

text: Model organism or animal

characteristic: age

characteristic: breed

characteristic: cultivar

characteristic: ecotype

text: USA: Massachusetts

characteristic: isolate

text: Mus musculus

text: male

text: Brain

text: Sham High Salt Diet (HSD) biological replicate #4


text: Brigham and Women's Hospital

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: USA: Massachusetts

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Brain

text: Sham High Salt Diet (HSD) biological replicate #5


characteristic: External Id

text: Brigham and Women's Hospital

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: SRA accession

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

text: repetitive closed head injury (rCHI) Normal Diet (ND) biological replicate #1


text: Brigham and Women's Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Model organism or animal

text: USA: Massachusetts

text: Mus musculus

characteristic: organism

text: male

text: Brain

text: repetitive closed head injury (rCHI) Normal Diet (ND) biological replicate #2


text: Brigham and Women's Hospital

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

characteristic: tissue

text: repetitive closed head injury (rCHI) Normal Diet (ND) biological replicate #3

characteristic: title


text: Brigham and Women's Hospital

text: live

text: Model organism or animal

characteristic: age

characteristic: breed

characteristic: cultivar

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

text: repetitive closed head injury (rCHI) Normal Diet (ND) biological replicate #4


text: MIT

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: USA: Boston

text: Homo sapiens

characteristic: host

text: not applicable

characteristic: isolate

text: not applicable

text: 43.36 N 71.06 W

text: human gut metagenome

text: Single cell


text: Brigham and Women's Hospital

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: ecotype

text: USA: Massachusetts

text: Mus musculus

text: male

characteristic: sex

text: Brain

text: repetitive closed head injury (rCHI) Normal Diet (ND) biological replicate #5


characteristic: External Id

text: Brigham and Women's Hospital

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: SRA accession

text: USA: Massachusetts

text: Mus musculus

text: male

characteristic: strain

text: Brain

text: repetitive closed head injury (rCHI) High Salt Diet (HSD) biological replicate #1


text: Brigham and Women's Hospital

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: USA: Massachusetts

text: Mus musculus

characteristic: organism

text: male

text: Brain

text: repetitive closed head injury (rCHI) High Salt Diet (HSD) biological replicate #2


text: Brigham and Women's Hospital

text: live

text: Model organism or animal

characteristic: age

characteristic: breed

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

characteristic: tissue

text: repetitive closed head injury (rCHI) High Salt Diet (HSD) biological replicate #3

characteristic: title


text: Brigham and Women's Hospital

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: cultivar

text: USA: Massachusetts

characteristic: isolate

text: Mus musculus

text: male

text: Brain

text: repetitive closed head injury (rCHI) High Salt Diet (HSD) biological replicate #4


text: Brigham and Women's Hospital

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: ecotype

text: USA: Massachusetts

text: Mus musculus

text: male

text: Brain

text: repetitive closed head injury (rCHI) High Salt Diet (HSD) biological replicate #5


characteristic: External Id

text: University of Lethbridge

characteristic: INSDC center name

text: live

text: Model organism or animal

text: 21 dpg

text: not applicable

text: not applicable

text: not applicable

text: gDNA was quantified using the Quant-iT PicoGreen dsDNA Assay Kit (Life Technologies). Libraries were generated using the NEBNext Ultra II DNA Library Prep Kit for Illumina (New England BioLabs) as per the manufacturers recommendations. Adapters and PCR primers were purchased from IDT. Size selection of libraries contained the desired insert size has been performed using SparQ beads (Qiagen). Libraries were quantified using the Kapa Illumina GA with Revised Primers-SYBR Fast Universal kit (Kapa Biosystems). Average size fragment was determined using a LabChip GX (PerkinElmer) instrument.

text: Columbia

characteristic: filename

text: fastq

characteristic: filetype

text: not applicable

text: Illumina HiSeq 2000

text: not applicable

text: paired

text: RANDOM

text: GENOMIC

text: WGS

text: Arabidopsis thaliana

text: ILLUMINA

characteristic: platform

text: not applicable

characteristic: sex

text: Transgenic line 15d8

text: Leaf

text: Whole genome sequencing of heat exposed Arabidopsis thaliana plants

text: Cold stress

characteristic: treatment


text: University of Lethbridge

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

text: 21 dpg

characteristic: age

text: not applicable

text: not applicable

text: not applicable

text: Columbia

text: fastq

text: not applicable

text: Illumina HiSeq 2000

text: not applicable

text: paired

text: RANDOM

text: GENOMIC

text: WGS

text: Arabidopsis thaliana

characteristic: organism

text: ILLUMINA

text: not applicable

text: Transgenic line 15d8

characteristic: strain

text: Leaf

text: Cold stress


text: University of Lethbridge

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

text: 21 dpg

text: not applicable

characteristic: breed

text: not applicable

text: not applicable

characteristic: cultivar

text: gDNA was quantified using the Quant-iT PicoGreen dsDNA Assay Kit (Life Technologies). Libraries were generated with the NEBNext Ultra II DNA Library Prep Kit for Illumina (New England BioLabs) using 250 ng of input genomic DNA. Adapters were purchased from NEB. Size selection of libraries containing the desired insert size have been performed using sparQ PureMag Beads (Quantabio). Bisulfite conversion had been carried out

text: Columbia

text: HI.4834.001.NEBNext_Index_4.1_R1.fastq.gz

text: HI.4834.001.NEBNext_Index_4.1_R2.fastq.gz

text: fastq

text: not applicable

text: Illumina HiSeq 2000

text: not applicable

characteristic: isolate

text: paired

text: RANDOM

text: GENOMIC

text: Bisulfite-Seq

text: Arabidopsis thaliana

text: ILLUMINA

text: not applicable

text: Transgenic line 15d8

text: Leaf

characteristic: tissue

text: Whole genome bisulfite sequencing of heat exposed Arabidopsis thaliana plants

characteristic: title

text: Cold stress


characteristic: External Id

text: University of Lethbridge

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: 21 dpg

text: not applicable

text: not applicable

text: not applicable

text: Columbia

characteristic: ecotype

text: HI.4834.001.NEBNext_Index_5.2_R1.fastq.gz

characteristic: filename

text: fastq

characteristic: filetype

text: not applicable

text: Illumina HiSeq 2000

text: not applicable

text: paired

text: RANDOM

text: GENOMIC

text: Bisulfite-Seq

text: Arabidopsis thaliana

text: ILLUMINA

characteristic: platform

text: not applicable

text: Transgenic line 15d8

text: Leaf

text: Cold stress


text: University of Lethbridge

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

text: 21 dpg

characteristic: age

text: not applicable

text: not applicable

text: not applicable

text: Columbia

text: HI.4834.001.NEBNext_Index_6.4_R1.fastq.gz

text: HI.4834.001.NEBNext_Index_6.4_R2.fastq.gz

text: fastq

text: not applicable

text: Illumina HiSeq 2000

text: not applicable

text: paired

text: RANDOM

text: GENOMIC

text: Bisulfite-Seq

text: Arabidopsis thaliana

text: ILLUMINA

text: not applicable

characteristic: sex

text: Transgenic line 15d8

text: Leaf

text: Cold stress

characteristic: treatment


text: University of Lethbridge

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

text: 21 dpg

text: not applicable

characteristic: breed

text: not applicable

text: not applicable

characteristic: cultivar

text: Columbia

text: HI.4834.001.NEBNext_Index_7.5_R1.fastq.gz

text: HI.4834.001.NEBNext_Index_7.5_R2.fastq.gz

text: fastq

text: not applicable

text: Illumina HiSeq 2000

text: not applicable

characteristic: isolate

text: paired

text: RANDOM

text: GENOMIC

text: Bisulfite-Seq

text: Arabidopsis thaliana

characteristic: organism

text: ILLUMINA

text: not applicable

text: Transgenic line 15d8

characteristic: strain

text: Leaf

text: Cold stress


characteristic: External Id

text: University of Lethbridge

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: 21 dpg

text: not applicable

text: not applicable

text: not applicable

text: Columbia

characteristic: ecotype

text: HI.4834.001.NEBNext_Index_8.6_R1.fastq.gz

characteristic: filename

text: HI.4834.001.NEBNext_Index_8.6_R2.fastq.gz

text: fastq

text: not applicable

text: Illumina HiSeq 2000

text: not applicable

text: paired

text: RANDOM

text: GENOMIC

text: Bisulfite-Seq

text: Arabidopsis thaliana

text: ILLUMINA

text: not applicable

text: Transgenic line 15d8

text: Leaf

characteristic: tissue

characteristic: title

text: Cold stress