text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: greensboro - north buffalo

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 214

text: no

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


status: PUBLIC

characteristic: External Id

text: NCSLPH Environmental Sciences Wastewater

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: wastewater surveillance

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: North Carolina Department of Health and Human Services

tag: attribute

text: bcov vaccine

text: thermofisher magmax viral/pathogen nucleic acid isolation kit on the KingFisher

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

characteristic: organism

text: Wastewater sequencing of NC Wastewater Monitoring Network samples

text: public health surveillance community-level

text: public health surveillance for the NC Wastewater Monitoring Network

text: North Carolina State Laboratory of Public Health

text: jacksonville

characteristic: title

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 215

text: census blocks clipped to wastewater service area polygon

text: no

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: lu et al. us cdc real-time reverse transcription pcr panel for detection of severe acutre respirtaory syndrome coronavirus 2- volume 26, number 8 - august 2020 - emerging infectious diseases journal - cdc

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: charlotte 2

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 216

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: decaro et al. detection of bovine coronavirus using a taqman-based real-time rt-pcr assay.

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: greenville

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 217

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: owasa

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 218

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: raleigh

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 219

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: south durham

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 220

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: wilmington northside - county

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 221

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: winston salem - salem

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 222

text: no

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: msd of buncombe county

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 223

text: no

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: greensboro - north buffalo

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 224

text: no

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: charlotte 2

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 225

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: greenville

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 226

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: owasa

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 227

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: raleigh

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 228

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: south durham

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 229

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: wilmington northside - county

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 230

text: yes

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: winston salem - salem

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 231

text: no

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: msd of buncombe county

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 232

text: no

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: bcov vaccine

text: USA: North Carolina

text: wastewater

text: wastewater metagenome

text: greensboro - north buffalo

text: pepper mild mottle virus

text: racki et al. 2014; haramoto et al 233

text: no

text: raw wastewater

text: wastewater treatment plant

text: composite

text: NC

text: copies/L

text: N gene (N1)

text: yes

text: copies/L

text: N gene (N2)

text: yes


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

characteristic: serovar

characteristic: strain

text: Salmonella enterica


tag: Namespace:University of Antwerp

text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Ref reactor d14

characteristic: description

text: R3 Ref reactor d14

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

characteristic: nitrate

text: wastewater metagenome

text: wastewater metagenome

characteristic: ph

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 3

text: Partial nitritation/ anammox

text: "Clipping of adapter and primer sequences was done using cutadapt (v4.1). Reads with ambiguous base-calls (Ns) were first removed to accurately map short adapter and primer sequences. Paired-end reads without an exact match to the forward and reverse adapter and primer sequence were removed. Further processing of the sequencing data was done with the DADA2 R package (v1.24.0) in R (v 4.2.2) according to (Callahan et al. 2016). As first quality control step, truncation was done with a quality score cut-off (truncQ=2). Additional filtering to eliminate reads containing any ambiguous base calls or reads with high expected errors (maxEE=2,2) was performed. Reads mapping to the Phix genome were discarded as well. After dereplication, further denoising using the Divisive Amplicon Denoising Algorithm (DADA) error estimation algorithm and the sample inference algorithm selfConsist (with nbases=1e8) was done. The obtained error rates were checked and monotonicity was enforced in the model fit to deal with binned quality scores. The loess function was reweighted (log10 transformation of total transition probabilities) whilst the span was adjusted to 2. Denoised reads inferred were subsequently merged. Finally, the amplicon sequence variant (ASV) table obtained after the removal of chimera was used for taxonomy assignment. This was done with the Naive Bayesian Classifier (with an 80% minimal bootstrap confidence threshold) and the DADA2 formatted Silva v132 and RDP trainset 16 reference taxonomy according to (Quast et al. 2013; Wang et al. 2007). "

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: suspended Sludge Inocc. 3

text: urine


characteristic: External Id

text: mothur

characteristic: INSDC center name

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Biofilm reactor d0

text: R3 Biofilm reactor d0

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: Biocarriers Inocc. 3

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: Biocarriers Inocc. 3

text: urine


text: mothur

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Ref reactor d0

text: R3 Ref reactor d0

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 3

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: suspended Sludge Inocc. 3

text: urine


text: mothur

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: 2000 mg/l

text: 2000 mg/l

text: R2 Cat reactor d43

text: R2 Cat reactor d43

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 2

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: suspended Sludge Inocc. 2

text: urine


text: mothur

text: live

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 2000 mg/l

text: 2000 mg/l

text: R2 Cat reactor d10

text: R2 Cat reactor d10

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 2

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: suspended Sludge Inocc. 2

text: urine


text: mothur

text: live

characteristic: SRA accession

text: 2000 mg/l

text: 2000 mg/l

text: R2 Cat reactor inocculum d0

text: R2 Cat reactor inocculum d0

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 2

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: suspended Sludge Inocc. 2

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R1 ref reactor d43

text: R1 ref reactor d43

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 1

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 25 mg N/L

text: suspended Sludge Inocc. 1

characteristic: title

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: Sludge sample MABR d209

text: Sludge sample MABR d209

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: Nitrogenisor sample d 209

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 200 mg N/L

text: Nitrogenisor sample d 209

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Biofilm reactor d135

text: R3 Biofilm reactor d135

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: Biocarriers Inocc. 3

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: Biocarriers Inocc. 3

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Ref reactor d135

text: R3 Ref reactor d135

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 3

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: suspended Sludge Inocc. 3

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Biofilm reactor d100

text: R3 Biofilm reactor d100

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: Biocarriers Inocc. 3

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: Biocarriers Inocc. 3

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Ref reactor d100

text: R3 Ref reactor d100

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 3

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: suspended Sludge Inocc. 3

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Biofilm reactor d55

text: R3 Biofilm reactor d55

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: Biocarriers Inocc. 3

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: Biocarriers Inocc. 3

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Ref reactor d55

text: R3 Ref reactor d55

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 3

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: suspended Sludge Inocc. 3

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R3 Biofilm reactor d14

text: R3 Biofilm reactor d14

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: Biocarriers Inocc. 3

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: Biocarriers Inocc. 3

text: urine


text: mothur

text: live

text: 2000 mg/l

text: 2000 mg/l

text: R1 ref reactor inocculum d0

text: R1 ref reactor inocculum d0

text: sewage

text: urine material

text: bioreactor

text: Switzerland: Zurich

text: 47.4039 N 8.6102 E

text: 25 mg N/l

text: wastewater metagenome

text: wastewater metagenome

text: alkalinization

text: microaerophilic

text: freezer

text: 1.5 mL

text: suspended Sludge Inocc. 1

text: Partial nitritation/ anammox

text: municipal

text: 200+ days

text: ammonia 50 mg N/L

text: suspended Sludge Inocc. 1

text: urine


text: live

text: Pathogen.cl

text: NYC

text: missing

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Escherichia coli

text: Escherichia coli


text: live

text: Pathogen.cl

text: NYC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

characteristic: serovar

characteristic: strain

text: Escherichia coli


text: Minnesota Department of Health Infectious Disease Laboratory Submission Group

text: live

characteristic: MLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: rectal swab

text: Acinetobacter baumannii

text: Microbe sample from Acinetobacter baumannii


text: Oregon State University

text: live

text: SARS-CoV-2: wastewater surveillance

text: Oregon State University/Oregon Health Authority

text: USA: Oregon

text: wastewater

text: wastewater metagenome

text: Oregon State University

text: SARS-CoV-2: wastewater surveillance sample from wastewater metagenome

text: raw wastewater

text: wastewater treatment plant

text: composite

text: copies/L

text: N gene (orf9)

text: yes

text: Not Provided: ddPCR detection of SARS-CoV-2 using the BioRad nCoV assay on the BioRad QXTwo


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: Emory University School of Medicine

text: live

text: Pathogen.cl

text: Emory University Cystic Fibrosis Biospecimen Registry

text: USA: Atlanta

text: Homo sapiens

text: Cystic Fibrosis

text: respiratory

text: 33.7941 N 84.3203 W

text: Stenotrophomonas maltophilia

text: Pathogen: clinical or host-associated sample from Stenotrophomonas maltophilia


text: Emory University School of Medicine

text: live

text: Pathogen.cl

text: USA: Atlanta

text: Homo sapiens

text: Cystic Fibrosis

text: respiratory

text: 33.7941 N 84.3203 W

text: Stenotrophomonas pavanii

text: Pathogen: clinical or host-associated sample from Stenotrophomonas pavanii


text: Emory University School of Medicine

text: live

text: Pathogen.cl

text: Biobank at the Adult Cystic Fibrosis Centre from the Prince Charles Hospital

text: Australia: Brisbane

text: Homo sapiens

text: Cystic Fibrosis

text: respiratory

text: 27.3899 S 153.0234 E

text: Stenotrophomonas muris

text: Pathogen: clinical or host-associated sample from Stenotrophomonas muris


text: Emory University School of Medicine

text: live

text: Pathogen.cl

text: Australia: Brisbane

text: Homo sapiens

text: Cystic Fibrosis

text: respiratory

text: 27.3899 S 153.0234 E

text: Stenotrophomonas maltophilia


text: University of Venda

text: live

text: Metagenome or environmental

text: South Africa: Donald Fraser Hospital - Vhufuli, Limpopo

text: Homo sapiens

text: cervix

text: 22.88703532 S 30.47977951 E

text: human vaginal metagenome

text: Metagenome or environmental sample from human vaginal metagenome


text: Department of Medicine, Imperial College London

text: live

text: Generic

text: HEL

characteristic: cell line

text: missing

text: missing

text: Homo sapiens

text: HEL

text: HEL CTRLsh 4C-Seq bait I, repeat #1

text: RNAi

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: HEL

text: missing

text: missing

text: Homo sapiens

text: HEL

text: HEL CTCFsh2 4C-Seq bait I, repeat #1

text: RNAi


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HEL

text: missing

text: missing

text: Homo sapiens

text: HEL

text: HEL CTCFsh1 4C-Seq bait I, repeat #1

text: RNAi


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: missing

text: missing

text: Homo sapiens

text: KCL22 4C-Seq bait D repeat #1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: missing

text: missing

text: Homo sapiens

text: KCL22 4C-Seq bait A, repeat #2


text: live

text: Generic

characteristic: SRA accession

text: missing

text: missing

text: Homo sapiens

characteristic: organism

text: K562 4C-Seq bait I, repeat #1


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: K562 4C-Seq bait D, repeat #1

characteristic: title


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: K562 4C-Seq bait A, repeat #2


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: KCL22 4C-Seq bait I, repeat #1


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: HL60 4C-Seq bait I, repeat #1


text: live

text: Generic

text: HEL

text: missing

text: missing

text: Homo sapiens

text: HEL

text: HEL 4C-Seq bait I, repeat #1


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: AML-OCI3 4C-Seq bait I, repeat #1


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: KCL22 4C-Seq bait A, repeat #1


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: HL60 4C-Seq bait A, repeat #1


text: live

text: Generic

text: HEL

text: missing

text: missing

text: Homo sapiens

text: HEL

text: HEL 4C-Seq bait A, repeat #1


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: AML-OCI3 4C-Seq bait A, repeat #1


text: live

text: Generic

text: primary CML cells

characteristic: cell type

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M141 4C-Seq bait B, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M139 4C-Seq bait B, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M135 4C-Seq bait B, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M128 4C-Seq bait B, repeat #2


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M125 4C-Seq bait B, repeat #2


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M141 4C-Seq bait A, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M139 4C-Seq bait A, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M135 4C-Seq bait A, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M128 4C-Seq bait A, repeat #2


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M125 4C-Seq bait A, repeat #2


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M128 4C-Seq bait B, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M126 4C-Seq bait B, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M125 4C-Seq bait B, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M124 4C-Seq bait B, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M102 4C-Seq bait B, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M101 4C-Seq bait B, repeat #1


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: K562 4C-Seq bait B, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M128 4C-Seq bait A, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M126 4C-Seq bait A, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M125 4C-Seq bait A, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M124 4C-Seq bait A, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M102 4C-Seq bait A, repeat #1


text: live

text: Generic

text: primary CML cells

text: missing

text: missing

text: Homo sapiens

text: primary CML cells

text: M101 4C-Seq bait A, repeat #1


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: K562 4C-Seq bait A, repeat #1


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: Kasumi-4 ATAC


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: KCL22 ATAC


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: HL60 ATAC


text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: K562 ATAC


text: live

text: Generic

text: HEL

text: missing

text: missing

text: Homo sapiens

text: HEL

text: HEL ATAC


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Shigella sonnei

text: missing

characteristic: serovar

text: Shigella sonnei


text: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBPL

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Thompson-Bishop-Sparks State Diagnostic Laboratory, Auburn, AL

text: clinical isolate

characteristic: description

text: USA: AL

text: Sus scrofa

text: Arteritis/Sepsis

text: lung

text: Streptococcus suis

text: NAHLN (USDA-APHIS-VS) Veterinary Pathogen Umbrella Project

text: active surveillance not initiated by an outbreak

text: animal

text: not applicable

characteristic: strain

text: One Health Enteric sample from Streptococcus suis


characteristic: External Id

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: California Animal Health & Food Safety Laboratory System, Davis, CA

text: clinical isolate

text: USA: CA

text: Sus scrofa

text: Encephalitis

text: Brain Swab

text: Streptococcus suis

text: National Veterinary Services Laboratories

text: animal

text: not applicable


characteristic: INSDC center name

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: CA

text: Sus scrofa

text: Pleuropneumonia

text: Lung Swab

text: Streptococcus suis

text: animal

text: not applicable


characteristic: INSDC first public

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: CA

text: Sus scrofa

text: Severe meningitis

text: Brain Swab

text: Streptococcus suis

text: animal

text: not applicable


characteristic: INSDC last update

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Colorado State University Veterinary Diagnostic Laboratory, Fort Collins, CO

text: clinical isolate

text: USA: CO

text: Sus scrofa

text: Severe acute diffuse fibrinous polyserositis

text: lung

text: Streptococcus suis

text: animal

text: not applicable


characteristic: INSDC secondary accession

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: CO

text: Sus scrofa

text: Interstitial pneumonia, subacute, lymphohistiocytic, multifocal to coalescing, moderate.

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

characteristic: INSDC status

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: CO

text: Sus scrofa

text: Suppurative bronchopneumonia, cranioventral, subacute, marked with perivascular edema

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

characteristic: NCBI submission model

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: CO

text: Sus scrofa

text: Septicemia

text: blood

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

characteristic: NCBI submission package

text: veterinary diagnostic laboratory

text: Bronson Animal Disease Diagnostic Laboratory, Kissimmee, FL

text: clinical isolate

text: USA: FL

text: Sus scrofa

text: Necropsy

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

characteristic: SRA accession

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: FL

text: Sus scrofa

text: Infection

text: nasal swab

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: FL

text: Sus scrofa

text: Necropsy

text: brain

text: Streptococcus suis

characteristic: organism

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: FL

text: Sus scrofa

text: Necropsy

text: lung

text: Streptococcus suis

text: animal

text: not applicable

characteristic: title


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Iowa State University Veterinary Diagnostic Laboratory, Ames, IA

text: clinical isolate

text: USA: IA

text: Sus scrofa

text: Meningitis

text: brain

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: IA

text: Sus scrofa

text: meningoencephalitis

text: brain

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Veterinary Diagnostic Laboratory of University of Urbana-Champaign, Urbana, IL

text: clinical isolate

text: USA: IL

text: Sus scrofa

text: Meningitis

text: brain

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: IL

text: Sus scrofa

text: Bronchopneumonia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: IL

text: Sus scrofa

text: Pneumonia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Kansas State University Veterinary Diagnostic Laboratory, Manhattan, KS

text: clinical isolate

text: USA: KS

text: Sus scrofa

text: PNEUMONIA

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: KS

text: Sus scrofa

text: PNEUMONIA

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: University of Kentucky Veterinary Diagnostic Laboratory, Lexington, KY

text: clinical isolate

text: USA: KY

text: Sus scrofa

text: Bronchopneumonia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: KY

text: Sus scrofa

text: Bacterial septicemia

text: Pericardium

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Michigan State University Diagnostic Center for Population and Animal Health, Lansing, MI

text: clinical isolate

text: USA: MI

text: Sus scrofa

text: Pneumonia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBPL

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: University of Minnesota Veterinary Diagnostic Laboratory, St. Paul, MN

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: endocarditis

text: Heart valve

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: septicemia

text: Meninges

text: Streptococcus suis

text: NAHLN (USDA-APHIS-VS) Veterinary Pathogen Umbrella Project

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: otitis interna

text: inner ear

text: Streptococcus suis

text: active surveillance not initiated by an outbreak

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: polyarthritis

text: Joint

text: Streptococcus suis

text: animal

text: not applicable

text: One Health Enteric sample from Streptococcus suis


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: pleuritis

text: pleura

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: valvular endocarditis

text: heart

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: bacteremia

text: brain

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: septicemia

text: Joint

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: valvular endocarditis

text: heart

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: meningitis

text: brain

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: MN

text: Sus scrofa

text: pleuritis

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: North Carolina Veterinary Diagnostic Laboratory System, Rollins Animal Disease Diagnostic Laboratory, Raleigh, NC

text: clinical isolate

text: USA: NC

text: Sus scrofa

text: septicemia

text: liver

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: University of Nebraska Veterinary Diagnostic Center, Lincoln, NE

text: clinical isolate

text: USA: NE

text: Sus scrofa

text: Pneumonia

text: lung

text: Streptococcus suis

text: National Veterinary Services Laboratories

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: NE

text: Sus scrofa

text: Meningoencephalitis

text: brain

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: NE

text: Sus scrofa

text: Pneumoniae

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: NE

text: Sus scrofa

text: Sepsis

text: Joint Swab

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: NE

text: Sus scrofa

text: Sepsis

text: Lung/Liver

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Cornell Animal Health Diagnostic Center, Ithaca, NY

text: clinical isolate

text: USA: NY

text: Sus scrofa

text: Sepsis

text: Abscess

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Ohio Department of Agriculture Animal Disease Diagnostic Laboratory, Reynoldsburg, OH

text: clinical isolate

text: USA: OH

text: Sus scrofa

text: Feeder pig 3/100 died in 4 weeks. Pig necropsied 2/7. Pericardial adhesions. Lung edema & hemorrhage, liver fibrin, copius blood in abdominal cavity.

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: OH

text: Sus scrofa

text: Sow aborted an entire of piglets, which became a severe case of metritis and the sow was euthanized. Piglets were full term.

text: Placental Fluid

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: OH

text: Sus scrofa

text: Weaned piglets joint swelling with and without scours.

text: Joint Swab

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: OH

text: Sus scrofa

text: Septic Streptococcus suis infection

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Pennsylvania State University Animal Diagnostic Laboratory, University Park, PA

text: clinical isolate

text: USA: PA

text: Sus scrofa

text: Streptococcus suis septicemia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: PA

text: Sus scrofa

text: bicavitary effusion, fibrinous polyserositis, and diffuse hepatitis

text: liver

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: South Dakota State University Animal Disease Research and Diagnostics Laboratory, Brookings, SD

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: pneumonia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: septicemia

text: lymph node

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: meningoencephalitis

text: cerebellum

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: meningitis

text: brain

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: bronchopneumonia, meningitis

text: cerebellum

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: pneumonia

text: lymph node

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: bronchopneumonia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: septicemia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: pneumonia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: septicemia

text: spleen

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: respiratotry disease

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: SD

text: Sus scrofa

text: streptococcal disease

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Washington State University Animal Disease Diagnostic Laboratory, Pullman, WA

text: clinical isolate

text: USA: WA

text: Sus scrofa

text: Respiratory Infection

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBPL

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: WA

text: Sus scrofa

text: Respiratory Infection

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: WA

text: Sus scrofa

text: septicemia

text: Tissue pool

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: WA

text: Sus scrofa

text: septicemia

text: lung

text: Streptococcus suis

text: animal

text: not applicable


text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: University of Wisconsin Veterinary Diagnostic Laboratory, Madison, WI

text: clinical isolate

text: USA: WI

text: Sus scrofa

text: Streptococcus suis meningitis/septicemia

text: brain

text: Streptococcus suis

text: animal

text: not applicable


text: University of Venda

text: live

text: Metagenome or environmental

text: South Africa: Donald Fraser Hospital - Vhufuli, Limpopo

text: Homo sapiens

text: cervix

text: 22.88703532 S 30.47977951 E

text: human vaginal metagenome

text: Metagenome or environmental sample from human vaginal metagenome


text: Department of Medicine, Imperial College London

text: live

text: Generic

text: CML patient leukaemia cells

characteristic: cell type

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M128 H3K27ac, repeat


text: live

text: Generic

text: CML patient leukaemia cells

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M126 H3K27ac


text: live

text: Generic

text: CML patient leukaemia cells

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M124 H3K27ac


text: live

text: Generic

text: CML patient leukaemia cells

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M128 H3K27ac


text: live

text: Generic

text: CML patient leukaemia cells

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M125 H3K27ac


text: live

text: Generic

text: CML patient leukaemia cells

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M110 H3K27ac


text: live

text: Generic

text: CML patient leukaemia cells

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M105 H3K27ac


text: live

text: Generic

text: CML patient leukaemia cells

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M102 H3K27ac


text: live

text: Generic

text: CML patient leukaemia cells

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M101 input ctrl


text: live

text: Generic

text: CML patient leukaemia cells

text: missing

text: missing

text: Homo sapiens

text: CML patient leukaemia cells

text: M101 H3K27ac


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Pseudomonas fluorescens

text: cell culture

text: Microbe sample from Pseudomonas fluorescens


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: compost

text: Acinetobacter johnsonii

text: cell culture

text: Microbe sample from Acinetobacter johnsonii


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: compost

text: Enterobacter ludwigii

text: cell culture

text: Microbe sample from Enterobacter ludwigii


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: compost

text: Acinetobacter sp. B2070

text: cell culture

text: Microbe sample from Acinetobacter sp. B2070


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: compost

text: Enterobacter sp. 638

text: cell culture

text: Microbe sample from Enterobacter sp. 638


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: compost

text: Acinetobacter sp. 4D-W-22

text: cell culture

text: Microbe sample from Acinetobacter sp. 4D-W-22


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Comamonas sp. B-9

text: cell culture

text: Microbe sample from Comamonas sp. B-9


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Chryseobacterium sp. MYb264

text: cell culture

text: Microbe sample from Chryseobacterium sp. MYb264


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Chryseobacterium sp. MYb328

text: cell culture

text: Microbe sample from Chryseobacterium sp. MYb328


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Pseudomonas sp. MYb330

text: cell culture

text: Microbe sample from Pseudomonas sp. MYb330


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Pseudomonas sp. MYb331

text: cell culture

text: Microbe sample from Pseudomonas sp. MYb331


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Pseudomonas sp. MYb371

text: cell culture

text: Microbe sample from Pseudomonas sp. MYb371


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Erwinia sp. MYb375

text: cell culture

text: Microbe sample from Erwinia sp. MYb375


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Ochrobactrum sp. MYb379

text: cell culture

text: Microbe sample from Ochrobactrum sp. MYb379


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Sphingobacterium sp. MYb382

text: cell culture

text: Microbe sample from Sphingobacterium sp. MYb382


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Sphingobacterium sp. MYb388

text: cell culture

text: Microbe sample from Sphingobacterium sp. MYb388


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Comamonas sp. MYb396

text: cell culture

text: Microbe sample from Comamonas sp. MYb396


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Pseudomonas sp. MYb398

text: cell culture

text: Microbe sample from Pseudomonas sp. MYb398


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Erwinia sp. MYb416

text: cell culture

text: Microbe sample from Erwinia sp. MYb416


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Erwinia sp. MYb535

text: cell culture

text: Microbe sample from Erwinia sp. MYb535


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Pseudomonas sp. MYb541

text: cell culture

text: Microbe sample from Pseudomonas sp. MYb541


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: rotting apple

text: Gluconobacter wancherniae

text: cell culture

text: Microbe sample from Gluconobacter wancherniae


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: rotting apple

text: Gluconobacter cerinus

text: cell culture

text: Microbe sample from Gluconobacter cerinus


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: rotting apple

text: Gluconobacter albidus

text: cell culture

text: Microbe sample from Gluconobacter albidus


text: Christian-Albrechts-University Kiel

text: live

text: Microbe, viral or environmental

text: Schulenburg Lab

text: Germany:Kiel

text: Caenorhabditis elegans

text: worm

text: Comamonas sp. TK41

text: cell culture

text: Microbe sample from Comamonas sp. TK41


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Thompson

characteristic: serovar

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: enteritidis

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Dublin

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: I 4:i:-

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Braenderup

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: Newport

text: human

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella sonnei

text: Shigella sonnei


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella flexneri

text: Shigella flexneri


text: University of Venda

text: live

text: Metagenome or environmental

text: South Africa: Donald Fraser Hospital - Vhufuli, Limpopo

text: Homo sapiens

text: cervix

text: 22.88703532 S 30.47977951 E

text: human vaginal metagenome

text: Metagenome or environmental sample from human vaginal metagenome


text: live

text: Pathogen.env

text: NM

text: USA:NM

text: turkey

text: missing

text: Escherichia coli

text: Escherichia coli


text: live

text: Pathogen.env

text: NM

text: USA:NM

text: chicken

text: missing

text: Escherichia coli

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: Escherichia coli


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Shigella flexneri

text: missing

text: Shigella flexneri


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Campylobacter jejuni

text: missing

text: Campylobacter jejuni


text: live

text: Pathogen.env

text: NM

text: USA:NM

text: stool

text: missing

text: Shigella flexneri

text: Shigella flexneri


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: missing

text: Listeria monocytogenes


text: Department of Medicine, Imperial College London

text: live

text: Generic

text: Cell line

characteristic: cell line

text: Chronic Myelogenous leukaemia

text: missing

text: missing

text: Homo sapiens

text: Cell line

text: K562 Ponatinib PCHiC

text: Ponatinib

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: Cell line

text: Chronic Myelogenous leukaemia

text: missing

text: missing

text: Homo sapiens

text: Cell line

text: K562 DMSO PCHiC

text: DMSO


characteristic: INSDC center name

text: live

text: Pathogen.cl

text: HI

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Newport

characteristic: strain

text: Salmonella enterica


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: HI

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: enteritidis

text: Salmonella enterica


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: NM

text: USA:NM

text: chicken

text: missing

text: Salmonella enterica

text: Salmonella enterica


text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: NM

text: USA:NM

text: turkey

text: missing

text: Salmonella enterica

text: Salmonella enterica


text: live

text: Pathogen.cl

characteristic: SRA accession

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


text: live

text: Pathogen.env

text: WY

text: USA

text: missing

text: missing

text: Small Intestine

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica

characteristic: title


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: Hollender Lab, Horticulture, Michigan State University

text: live

text: Generic

text: missing

text: Weeping architecture peach tree

characteristic: genotype

text: missing

text: Prunus persica

text: Weeping Peach Tree Branch Internode 2 tissue from top (upper / adaxial) side of branch

characteristic: tissue

text: Weeping peach tree #3 branch #5 Internode 2 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping Peach Tree Branch Internode 2 tissue from bottom (lower / abaxial) side of branch

text: Weeping peach tree #3 branch #5 Internode 2 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping Peach Tree Branch Internode 1 tissue from top (upper / adaxial) side of branch

text: Weeping peach tree #3 branch #5 Internode 1 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping Peach Tree Branch Internode 1 tissue from bottom (lower / abaxial) side of branch

text: Weeping peach tree #3 branch #5 Internode 1 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #3 branch #2 Internode 2 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #3 branch #2 Internode 2 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #3 branch #2 Internode 1 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #3 branch #2 Internode 1 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #1 branch #5 Internode 2 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #1 branch #5 Internode 2 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #1 branch #5 Internode 1 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #1 branch #5 Internode 1 tissue from bottom (lower / abaxial) side of branch


text: Hollender Lab, Horticulture, Michigan State University

text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #1 branch #4 Internode 2 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #1 branch #4 Internode 2 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #1 branch #4 Internode 1 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Weeping architecture peach tree

text: missing

text: Prunus persica

text: Weeping peach tree #1 branch #4 Internode 1 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard Peach Tree Branch Internode 2 tissue from top (upper / adaxial) side of branch

text: Standard peach tree #3 branch #2 Internode 2 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard Peach Tree Branch Internode 2 tissue from bottom (lower / abaxial) side of branch

text: Standard peach tree #3 branch #2 Internode 2 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard Peach Tree Branch Internode 1 tissue from top (upper / adaxial) side of branch

text: Standard peach tree #3 branch #2 Internode 1 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard Peach Tree Branch Internode 1 tissue from bottom (lower / abaxial) side of branch

text: Standard peach tree #3 branch #2 Internode 1 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard peach tree #3 branch #1 Internode 2 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard peach tree #3 branch #1 Internode 2 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard peach tree #3 branch #1 Internode 1 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard peach tree #3 branch #1 Internode 1 tissue from bottom (lower / abaxial) side of branch


text: Hollender Lab, Horticulture, Michigan State University

text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard peach tree #1 branch #7 Internode 2 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard peach tree #1 branch #7 Internode 2 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard peach tree #1 branch #7 Internode 1 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard peach tree #1 branch #7 Internode 1 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard Peach Tree Branch Internode 2 tissue from top (upper / adaxial) side of branch

text: Standard peach tree #1 branch #1 Internode 2 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard Peach Tree Branch Internode 2 tissue from bottom (lower / abaxial) side of branch

text: Standard peach tree #1 branch #1 Internode 2 tissue from bottom (lower / abaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard Peach Tree Branch Internode 1 tissue from top (upper / adaxial) side of branch

text: Standard peach tree #1 branch #1 Internode 1 tissue from top (upper / adaxial) side of branch


text: live

text: Generic

text: missing

text: Standard architecture peach tree

text: missing

text: Prunus persica

text: Standard Peach Tree Branch Internode 1 tissue from bottom (lower / abaxial) side of branch

text: Standard peach tree #1 branch #1 Internode 1 tissue from bottom (lower / abaxial) side of branch


text: University of California Davis

text: live

text: Model organism or animal

text: 4, 35 weeks

characteristic: age

text: USA:California

text: Mus musculus

text: male and female

characteristic: sex

text: SAMP, AKR

text: MESENTERY, Small bowel epithelium

text: Model organism or animal sample from Mus musculus


characteristic: External Id

text: USDA

text: live

text: MIMARKS.survey

characteristic: amplicon

text: W

characteristic: crop

characteristic: depth

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: 458 m

characteristic: elev

text: ENVO:00000446|ENVO:01001199|ENVO:01001305

text: bulk soil

text: USA:Pendleton, Oregon

text: 45.43 N 118.37 W

text: soil metagenome

text: NTA

characteristic: plot

characteristic: replicate


text: USDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMARKS.survey

characteristic: NCBI submission model

characteristic: NCBI submission package

text: F

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 458 m

text: bulk soil

text: USA:Pendleton, Oregon

text: 45.43 N 118.37 W

text: soil metagenome

text: NTA


text: USDA

text: live

text: MIMARKS.survey

characteristic: SRA accession

text: W

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 458 m

text: bulk soil

text: USA:Pendleton, Oregon

text: 45.43 N 118.37 W

text: soil metagenome

characteristic: organism

text: NTB

characteristic: title


characteristic: External Id

text: USDA

text: live

text: MIMARKS.survey

characteristic: amplicon

text: P

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 458 m

text: bulk soil

text: USA:Pendleton, Oregon

text: 45.43 N 118.37 W

text: soil metagenome

text: NTB


text: USDA

text: live

text: MIMARKS.survey

text: LSU

text: W

characteristic: crop

characteristic: depth

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 458 m

text: bulk soil

text: USA:Pendleton, Oregon

text: 45.43 N 118.37 W

text: soil metagenome

text: NTA


text: USDA

text: live

text: MIMARKS.survey

text: LSU

text: F

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: 458 m

characteristic: elev

text: bulk soil

text: USA:Pendleton, Oregon

text: 45.43 N 118.37 W

text: soil metagenome

text: NTA


text: USDA

text: live

text: MIMARKS.survey

text: LSU

text: W

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 458 m

text: bulk soil

text: USA:Pendleton, Oregon

text: 45.43 N 118.37 W

text: soil metagenome

text: NTB

characteristic: plot

characteristic: replicate


text: USDA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMARKS.survey

text: LSU

text: P

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 458 m

text: bulk soil

text: USA:Pendleton, Oregon

text: 45.43 N 118.37 W

text: soil metagenome

text: NTB


characteristic: ID

text: Nantes University Hospital

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: Low

text: inulin dpi-5+pantoprazole

text: inulin

text: France: Nantes

text: Mus musculus

characteristic: host

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: High

text: inulin dpi-5+pantoprazole

text: inulin

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: High

characteristic: SRA accession

text: E.coli (Q/1611)

text: E.coli

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome

characteristic: organism

characteristic: title


characteristic: External Id

text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: Low

text: E.coli (Q/1611)

text: E.coli

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: Low

text: E.coli (3/2801)

text: E.coli

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: Low

text: E.coli (MIX)

text: E.coli

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: High

text: E.coli (MIX )

text: E.coli

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: High

text: Control

text: control

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: High

text: E.coli (MIX)

text: E.coli

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: High

text: E.coli (3/2801)

text: E.coli

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: Low

text: A.equolifaciens (1552) small

text: 1552 small

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: High

text: A.equolifaciens (1552) small

text: 1552 small

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: Low

text: A.caecimuris

text: caecimuris

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: Low

text: Cutibacterium acnes (1552) large

text: Cutibacterium

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: medium

text: Cutibacterium acnes (1552) large

text: Cutibacterium

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: Nantes University Hospital

text: live

text: Metagenome or environmental

text: medium

text: Control

text: control

text: France: Nantes

text: Mus musculus

text: stools

text: 47.12 N 1.33 W

text: mouse metagenome


text: UCLA

text: live

text: Plant

text: Ixchel Gonzalez-Ramirez and Debora Brandt

text: We used 2 individuals (IGR-150 G7, IGR-150 G5/T2) as a single pooled sample for Omni-C library preparation. All individuals are haploid and grown in a lab setting from sister spores obtained from the collection IGR150. The genotypes used are denominated genotype 5 (G5) and genotype 7 (G7). Taxonomic note: Asterella californica is now known as Calasterella californica.

text: young non-reproductive thallus

text: IGR-150 G7, G5-T2

characteristic: genotype

text: USA:Jesusita trail, Los Padres National Forest, CA.

text: not applicable

characteristic: isolate

text: 34.4722 N 119.707367 W

text: Asterella californica

text: not determined

characteristic: sex

text: thallus grown from spore

characteristic: tissue

text: Plant sample from Asterella californica/Calasterella californica (Pool 1)


text: DSBL, BMI, EPFL

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: cell line

text: missing

text: missing

text: Homo sapiens


text: PulseNet Next Generation Subtyping Methods Unit

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: CDC

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

characteristic: serovar

characteristic: strain

text: Salmonella enterica


text: UCLA

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Plant

text: We used 3 individuals (IGR-150 G8, IGR-150 G9, IGR-150 G10) as a single pooled sample for Omni-C library preparation. All individuals are haploid and grown in a lab setting from sister spores obtained from the collection IGR150. The genotypes used are denominated genotype 8 (G8), genotype 9 (G9) and genotype 10 (G10). Taxonomic note: Asterella californica is now known as Calesterella californica.

characteristic: description

text: young non-reproductive thallus

text: IGR 150 G8, G9, G10

text: USA: Jesusita trail, Los Padres National Forest, CA

text: not applicable

text: 34.4722 N 119.707367 W

text: Asterella californica

text: not determined

text: thallus grown from spore

text: Plant sample from Asterella californica/Calasterella californica (Pool 2)


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

characteristic: host

text: SARS-CoV-2/Human/USA/CA-CDPH-500124681/2023

text: clinical

text: Baseline surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


characteristic: External Id

text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124724/2023

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: Baseline surveillance

characteristic: title


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124775/2023

characteristic: isolate

text: clinical

text: Baseline surveillance


text: California Department of Public Health

characteristic: INSDC secondary accession

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124777/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124778/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124779/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124780/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124781/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124782/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124783/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124784/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124785/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124786/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124787/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124788/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124789/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124790/2023

text: clinical

text: Baseline surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124791/2023

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124792/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124793/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124794/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124795/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124796/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124797/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124799/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124801/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124802/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124803/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124804/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124805/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124806/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124807/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124808/2023

text: clinical

text: Baseline surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124809/2023

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124810/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124811/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124812/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124813/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124814/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124815/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124816/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124817/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124818/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124819/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124820/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124821/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124822/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124823/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124824/2023

text: clinical

text: Baseline surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124825/2023

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124826/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124827/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124828/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124829/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124830/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124831/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124832/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124833/2023

text: clinical

text: Baseline surveillance


text: California Department of Public Health

text: live

text: SARS-CoV-2: clinical or host-associated

text: TPMG Regional Laboratory

text: USA: California

text: Homo sapiens

text: SARS-CoV-2/Human/USA/CA-CDPH-500124834/2023

text: clinical

text: Baseline surveillance