text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


status: PUBLIC

characteristic: External Id

text: University of Minnesota

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

characteristic: host

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

characteristic: megabases

text: not applicable

text: bovine metagenome

characteristic: organism

text: not applicable

text: Sterile gauze square

text: Sterile gauze square premoistened with 10X phosphate buffer saline

text: Sample

text: Technician D

text: MIMARKS Survey related sample from bovine metagenome

characteristic: title


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: Sterile gauze square removed from whirl-pak bag within farm

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: Sterile gauze square kept in whirl-pak bag within farm

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: CD1 lysis buffer (Qiagen, Powersoil Pro Kit)

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: not applicable

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm B

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm D

text: USA

text: Bos taurus

text: Teat apex

text: NSJSJH

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm D

text: USA

text: Bos taurus

text: Teat apex

text: NMSJHSJH

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm D

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm B

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: not applicable

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm D

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: missing

text: Unknown

text: USA

text: Bos taurus

text: Teat apex

text: missing

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: missing

text: Sterile gauze square

text: Sample

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: Bos taurus

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: POS

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: ZymoBIOMICS D6310

text: not applicable

text: not applicable

text: Positive

text: Technician A


text: New Jersey Department of Agriculture

characteristic: INSDC secondary accession

text: live

text: One Health Enteric

text: veterinary facility or diagnostic laboratory

text: New Jersey Department of Agriculture Animal Health Diagnostic Laboratory

text: USA:New Jersey

text: pigeon

text: feces

text: missing

text: Escherichia coli

text: GenomeTrakr; LFFM-FY4

text: diagnostic testing [GENEPIO:0100002]

text: animal

characteristic: strain

text: One Health Enteric sample from Escherichia coli


text: New Jersey Department of Agriculture

text: live

text: One Health Enteric

text: animal import/export quarantine facility

text: USA:New Jersey

text: Equus caballus

text: vaginal swab

text: missing

text: Escherichia coli

text: GenomeTrakr; LFFM-FY4

text: targeted surveillance [GENEPIO:0100006]

text: animal


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: missing

text: missing

characteristic: serovar

text: human

text: Salmonella enterica


characteristic: External Id

text: New Jersey Department of Agriculture

text: live

text: One Health Enteric

text: USA:New Jersey

text: pigeon

text: feces

text: missing

text: Salmonella enterica

text: GenomeTrakr; LFFM-FY4

text: diagnostic testing [GENEPIO:0100002]

text: Typhimurium

text: animal

text: One Health Enteric sample from Salmonella enterica


text: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBPL

characteristic: INSDC center name

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: Purdue University Animal Disease Diagnostic Laboratory, West Lafayette, IN

text: clinical isolate

text: USA: IN

text: Sus scrofa

text: pneumonia

text: lung pool

text: Streptococcus suis

text: NAHLN (USDA-APHIS-VS) Veterinary Pathogen Umbrella Project

text: active surveillance not initiated by an outbreak

text: animal

text: not applicable

text: One Health Enteric sample from Streptococcus suis


characteristic: INSDC first public

text: live

text: One Health Enteric

text: veterinary diagnostic laboratory

text: clinical isolate

text: USA: IN

text: Sus scrofa

text: septicemia

text: brain

text: Streptococcus suis

text: animal

text: not applicable


text: Duke University

characteristic: INSDC last update

text: live

text: Human

characteristic: age

text: Raolab

text: missing

text: missing

text: missing

text: USA

text: Corneal Rim

text: Homo sapiens

text: male

characteristic: sex

text: TM

characteristic: tissue

text: CONTROL


text: Duke University

text: live

characteristic: INSDC status

text: Human

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Raolab

text: missing

text: missing

text: missing

text: USA

text: Corneal Rim

text: Homo sapiens

text: male

text: TM

text: GDF


text: live

text: Pathogen.env

text: Texas Tech University

text: USA:GA

text: missing

text: chicken

text: missing

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr; LFFM-FY4

text: Texas Department of State Health Services

text: missing

text: food

text: Pathogen: environmental/food/other


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

characteristic: host

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Sundsvall

characteristic: strain

text: Salmonella enterica


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

characteristic: isolate

text: missing

text: missing

text: missing

text: Salmonella enterica

text: enteritidis

characteristic: serovar

text: Salmonella enterica


characteristic: External Id

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: Mbandaka

text: Salmonella enterica


text: University of Minnesota

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

characteristic: megabases

text: Molecular grade water

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Library

text: missing


text: University of Minnesota

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Synthetic standard

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission model

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Biophysical standard

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

characteristic: NCBI submission package

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Library mock community

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

characteristic: SRA accession

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: missing

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sterile gauze square premoistened with 10X phosphate buffer saline

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

characteristic: organism

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B

text: MIMARKS Survey related sample from bovine metagenome


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

characteristic: host

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E

characteristic: title


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: Sterile gauze square removed from whirl-pak bag within farm

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: Sterile gauze square kept in whirl-pak bag within farm

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm B

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: MISSING

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: CD1 lysis buffer (Qiagen, Powersoil Pro Kit)

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: missing

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: POS

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: ZymoBIOMICS D6310

text: not applicable

text: not applicable

text: Positive

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Molecular grade water

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Library

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Synthetic standard

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Biophysical standard

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Library mock community

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: missing

text: Farm C

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician D


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: missing

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: missing

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: POS

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: ZymoBIOMICS D6310

text: not applicable

text: not applicable

text: Positive

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Molecular grade water

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Library

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Synthetic standard

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Biophysical standard

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: missing

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Library mock community

text: missing


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: SBLANK

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Blank

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician A


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Other

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: EXT

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Extraction

text: Technician E


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm A

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Prepartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: Bos taurus

text: Teat apex

text: H

text: Postpartum

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Sample

text: Technician C


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: not applicable

text: not applicable

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: Farm E

text: USA

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: AIR

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: Sterile gauze square

text: Air

text: Technician B


text: University of Minnesota

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: missing

text: missing

text: missing

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: not applicable

text: not applicable

text: not applicable

text: missing

text: Unknown

text: USA

text: Bos taurus

text: Teat apex

text: missing

text: missing

text: female

text: not applicable

text: not applicable

text: bovine metagenome

text: not applicable

text: missing

text: Sterile gauze square

text: Sample

text: missing


Escherichia coli -104

text: hospital

text: live

text: Microbe, viral or environmental

text: China:xuzhou

text: sputum

text: Escherichia coli

text: mixed culture

text: Escherichia coli -104

text: Microbe sample from Escherichia coli


text: Wadsworth Center - NYS DOH

characteristic: INSDC secondary accession

text: live

text: MLST16 Pasteur

characteristic: MLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: unknown

text: Acinetobacter baumannii

text: whole organism

text: Microbe sample from Acinetobacter baumannii


text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

characteristic: isolate

text: rectal swab

text: Acinetobacter baumannii

text: whole organism

characteristic: strain


characteristic: External Id

text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: tracheal swab

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

characteristic: INSDC center name

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: trachea

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

characteristic: INSDC first public

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: catheter tip

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

characteristic: INSDC last update

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: unknown

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: urine

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST499 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: wound

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: tracheal aspirate

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: sputum

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST4843 PubMLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: rectal swab

text: Klebsiella pneumoniae

text: whole organism

text: Microbe sample from Klebsiella pneumoniae


text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: blood

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST2 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: bronchial wash

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST463 PubMLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: rectal swab

text: Pseudomonas aeruginosa

text: whole organism

text: Microbe sample from Pseudomonas aeruginosa


text: Wadsworth Center - NYS DOH

text: live

text: MLST147 PubMLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: bronchial

text: Klebsiella pneumoniae

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST16 Pasteur

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: wound

text: Acinetobacter baumannii

text: whole organism


text: Wadsworth Center - NYS DOH

text: live

text: MLST4843 PubMLST

text: Microbe, viral or environmental

text: USA

text: Homo sapiens

text: unknown

text: Klebsiella pneumoniae

text: whole organism


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

characteristic: serovar

text: Escherichia coli


text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Listeria monocytogenes

text: missing

text: Listeria monocytogenes


text: live

text: Pathogen.env

text: Texas Tech University

text: USA:GA

text: missing

text: chicken

text: missing

text: Salmonella enterica

text: GenomeTrakr; LFFM-FY4

text: missing

text: food

text: Pathogen: environmental/food/other


text: live

text: Pathogen.cl

text: CDC

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: live

text: Pathogen.cl

text: CDC

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Escherichia coli

text: missing

text: missing

text: missing

text: human

text: Escherichia coli


text: live

text: Pathogen.cl

text: missing

text: USA

text: missing

text: missing

text: missing

text: missing

text: missing

text: missing

text: Salmonella enterica

text: missing

text: Salmonella enterica


text: Los Angeles County Public Health Lab microbial pathogen submission group

text: live

text: SARS-CoV-2: clinical or host-associated

text: Pomona Valley Hospital Medical Center

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03904/2023

text: clinical

text: Baseline Surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: live

text: SARS-CoV-2: clinical or host-associated

text: Pomona Valley Hospital Medical Center

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03905/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: Pomona Valley Hospital Medical Center

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03906/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: Pomona Valley Hospital Medical Center

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03907/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USC Verdugo Hills Hospital

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03908/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USC Verdugo Hills Hospital

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03909/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USC Verdugo Hills Hospital

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03910/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USC Verdugo Hills Hospital

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03911/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USC Verdugo Hills Hospital

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03912/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USC Verdugo Hills Hospital

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03913/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USC Verdugo Hills Hospital

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03914/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USC Verdugo Hills Hospital

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03915/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USC Verdugo Hills Hospital

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03916/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: UCLA Health Care Clinical Laboratory - Brentwood

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03917/2023

text: clinical

text: Baseline Surveillance


text: Los Angeles County Public Health Lab microbial pathogen submission group

text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03918/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03919/2023

text: clinical

text: Baseline Surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03920/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03921/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03922/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03923/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03924/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03925/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03926/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03927/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03928/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03929/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03930/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: Providence Saint John's Health Center

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03931/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: Providence Saint John's Health Center

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03932/2023

text: clinical

text: Baseline Surveillance


text: Los Angeles County Public Health Lab microbial pathogen submission group

text: live

text: SARS-CoV-2: clinical or host-associated

text: Providence Saint John's Health Center

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03933/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: Providence Saint John's Health Center

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03934/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: Providence Saint John's Health Center

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03935/2023

text: clinical

text: Baseline Surveillance

text: SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: live

text: SARS-CoV-2: clinical or host-associated

text: Biological Laboratory

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03936/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: Biological Laboratory

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03937/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: MODMD, A PROFESSIONAL CORPORATION

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03938/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: MODMD, A PROFESSIONAL CORPORATION

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03939/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: MODMD, A PROFESSIONAL CORPORATION

text: USA: California, Los Angeles County

text: Homo sapiens

text: Severe acute respiratory syndrome coronavirus 2/Human/USA/CA-LACPHL-AY03940/2023

text: clinical

text: Baseline Surveillance


text: live

text: SARS-CoV-2: clinical or host-associated

text: DOCTORNOW

text: USA: California, Los Angeles County

text: Homo sapiens

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