E-MTAB-4097:Sample 71

characteristic: External Id

text: Inserm U830 Institut Curie

characteristic: INSDC center name

text: killed

text: E-MTAB-4097:Sample 71

text: ArrayExpress

text: human

text: Uveal melanoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 71


E-MTAB-4097:Sample 72

status: KILLED

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Inserm U830 Institut Curie

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4097:Sample 72

tag: Namespace:Inserm U830 Institut Curie

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: surgical enucleation and immediate freezing of the pathological sample RNA extraction by NucleoSpin Kit (Macherey-Nagel). Library construction using the Illumina TruSeq Stranded mRNA Sample Preparation Kit

characteristic: description

text: Uveal melanoma

characteristic: disease

characteristic: genetic modification

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 72

characteristic: title


E-MTAB-4097:Sample 73

characteristic: External Id

text: Inserm U830 Institut Curie

characteristic: INSDC center name

text: killed

text: E-MTAB-4097:Sample 73

text: ArrayExpress

text: human

text: Uveal melanoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 73


E-MTAB-4097:Sample 74

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Inserm U830 Institut Curie

text: killed

text: E-MTAB-4097:Sample 74

text: ArrayExpress

text: human

text: Uveal melanoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 74


E-MTAB-4097:Sample 8

characteristic: ENA-LAST-UPDATE

text: Inserm U830 Institut Curie

characteristic: INSDC first public

text: killed

text: E-MTAB-4097:Sample 8

text: ArrayExpress

text: human

text: Uveal melanoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 8


E-MTAB-4097:Sample 9

text: Inserm U830 Institut Curie

characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: E-MTAB-4097:Sample 9

text: ArrayExpress

text: human

text: Uveal melanoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 9


status: PUBLIC

text: UNIVERSITY OF ZUERICH

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF ZUERICH

characteristic: Submitter Id

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007

text: Ancestor strain of Sphingobium sp. Z007


text: UNIVERSITY OF ZUERICH

text: public

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007 evolved without predator replicate A


text: UNIVERSITY OF ZUERICH

text: public

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007 evolved without predator replicate B


text: UNIVERSITY OF ZUERICH

text: public

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007 evolved with predator replicate A


text: UNIVERSITY OF ZUERICH

text: public

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007 evolved with predator replicate B


text: UNIVERSITY OF ZUERICH

text: public

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007

text: Sphingobium sp. Z007 evolved with predator replicate C


E-MTAB-4163:Sample 1

text: UCSF

text: public

text: E-MTAB-4163:Sample 1

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: All mice were fed with high fat diet (60%). RNA-sequencing libraries were constructed from total RNA using an Ovation RNA-sequencing system version 2 (NuGEN).

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: interscapular brown adipose tissue

characteristic: organism part

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

text: Sample 1

type: has member


E-MTAB-4163:Sample 10

text: UCSF

text: public

text: E-MTAB-4163:Sample 10

text: ArrayExpress

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inguinal adipose tissue

text: Mus musculus

text: male

text: Sample 10

characteristic: title


E-MTAB-4163:Sample 11

characteristic: ENA-CHECKLIST

characteristic: External Id

text: UCSF

characteristic: INSDC center name

text: public

text: E-MTAB-4163:Sample 11

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: inguinal adipose tissue

text: Mus musculus

text: male

text: Sample 11


E-MTAB-4163:Sample 12

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSF

characteristic: INSDC first public

text: public

text: E-MTAB-4163:Sample 12

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: inguinal adipose tissue

text: Mus musculus

text: male

text: Sample 12


E-MTAB-4163:Sample 13

text: UCSF

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4163:Sample 13

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: epididymal adipose tissue

text: Mus musculus

text: male

text: Sample 13


E-MTAB-4163:Sample 14

text: UCSF

text: public

text: E-MTAB-4163:Sample 14

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: epididymal adipose tissue

text: Mus musculus

text: male

text: Sample 14


E-MTAB-4163:Sample 15

text: UCSF

text: public

text: E-MTAB-4163:Sample 15

text: ArrayExpress

text: house mouse

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: epididymal adipose tissue

characteristic: organism part

characteristic: phenotype

text: Mus musculus

text: male

text: Sample 15


E-MTAB-4163:Sample 16

text: UCSF

text: public

text: E-MTAB-4163:Sample 16

text: ArrayExpress

text: house mouse

characteristic: description

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: epididymal adipose tissue

text: Mus musculus

text: male

characteristic: sex

text: Sample 16


E-MTAB-4163:Sample 2

characteristic: ENA-CHECKLIST

characteristic: External Id

text: UCSF

text: public

text: E-MTAB-4163:Sample 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: interscapular brown adipose tissue

text: Mus musculus

text: male

text: Sample 2

characteristic: title


E-MTAB-4163:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSF

characteristic: INSDC center name

text: public

text: E-MTAB-4163:Sample 3

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: interscapular brown adipose tissue

text: Mus musculus

text: male

text: Sample 3


E-MTAB-4163:Sample 4

text: UCSF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4163:Sample 4

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: interscapular brown adipose tissue

text: Mus musculus

text: male

text: Sample 4


E-MTAB-4163:Sample 5

text: UCSF

text: public

characteristic: SRA accession

text: E-MTAB-4163:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: interscapular brown adipose tissue

text: Mus musculus

text: male

text: Sample 5


E-MTAB-4163:Sample 6

text: UCSF

text: public

text: E-MTAB-4163:Sample 6

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: interscapular brown adipose tissue

characteristic: organism part

text: Mus musculus

text: male

text: Sample 6


E-MTAB-4163:Sample 7

text: UCSF

text: public

text: E-MTAB-4163:Sample 7

text: ArrayExpress

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inguinal adipose tissue

characteristic: phenotype

text: Mus musculus

text: male

text: Sample 7


E-MTAB-4163:Sample 8

characteristic: ENA-CHECKLIST

characteristic: External Id

text: UCSF

text: public

text: E-MTAB-4163:Sample 8

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: inguinal adipose tissue

text: Mus musculus

text: male

characteristic: sex

text: Sample 8


E-MTAB-4163:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: E-MTAB-4163:Sample 9

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: inguinal adipose tissue

text: Mus musculus

text: male

text: Sample 9

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Institute for molecular and tumor biology Philipps University  Marburg Germany

text: ArrayExpress

text: ovarian serous carcinoma cell

characteristic: cell type

text: human

text: Protocols: Ascites was collected from patients with high-grade serous ovarian carcinoma undergoing primary surgery at the University Hospital in Marburg. Informed consent was obtained from all patients according to the protocols approved by the local ethical committe After Ficoll gradient centrifugation, TAMs were purified by CD14 MACS and lysed in Peqgold (TRIzol-like solution based on phenol and chloroform). RNA was digested with DNase (MN) and purified on a Qiagen Minelute column. Illumina-compatible libraries were made using the Epicentre Scriptseq human/mouse/rat low input Gold kit. Illumina-compatible libraries were made using the Epicentre Scriptseq human/mouse/rat low input Gold kit. Libraries were created using the Illumina Truseq mRNA kit v2 used according to the manufacturer's instructions.

text: ovarian carcinoma

characteristic: disease

text: high grade

characteristic: disease staging

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: ascites

characteristic: sampling site

text: Homo sapiens


text: Institute for molecular and tumor biology Philipps University Marburg Germany

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: ovarian serous carcinoma cell

text: human

characteristic: common name

characteristic: description

text: ovarian carcinoma

text: high grade

text: Homo sapiens

text: Homo sapiens

text: ascites

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: ovarian serous carcinoma cell

text: human

text: Protocols: Ascites was collected from patients with high-grade serous ovarian carcinoma undergoing primary surgery at the University Hospital in Marburg. Informed consent was obtained from all patients according to the protocols approved by the local ethical committe After Ficoll gradient centrifugation, TAMs were purified by CD14 MACS and lysed in Peqgold (TRIzol-like solution based on phenol and chloroform). RNA was digested with DNase (MN) and purified on a Qiagen Minelute column. Illumina-compatible libraries were made using the Epicentre Scriptseq human/mouse/rat low input Gold kit. Libraries were created using the Illumina Truseq mRNA kit v2 used according to the manufacturer's instructions.

text: ovarian carcinoma

text: high grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ascites

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: tumor associated macrophage

text: human

text: ovarian carcinoma

text: high grade

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

characteristic: title


characteristic: INSDC last update

text: public

text: ArrayExpress

text: tumor associated T-cell

characteristic: cell type

text: human

text: ovarian carcinoma

characteristic: disease

text: high grade

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens


text: UNIVERSITY OF LEICESTER

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF LEICESTER

text: pygmy chimpanzee

text: Pan paniscus

text: Pan paniscus

text: Male

characteristic: sex

text: Male great apes


text: UNIVERSITY OF LEICESTER

text: public

characteristic: Submitter Id

text: Pan troglodytes troglodytes

text: Pan troglodytes troglodytes

text: Male

text: Male great apes


text: UNIVERSITY OF LEICESTER

text: public

text: Pan_troglodytes_troglodytes_and_verus_hybrid-Tommy

text: chimpanzee

characteristic: common name

text: Pan troglodytes

text: Pan troglodytes

text: Male

text: Male great apes


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEICESTER

text: public

text: Pan troglodytes schweinfurthii

text: Pan troglodytes schweinfurthii

text: Male

text: Male great apes


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LEICESTER

text: public

text: Pan troglodytes verus

text: Pan troglodytes verus

text: Male

text: Male great apes


characteristic: External Id

text: UNIVERSITY OF LEICESTER

text: public

text: Pan_troglodytes_verus_and_ellioti_hybrid-EB176JC

text: chimpanzee

text: Pan troglodytes

text: Pan troglodytes

text: Male

text: Male great apes


text: UNIVERSITY OF LEICESTER

text: public

text: western lowland gorilla

text: Gorilla gorilla gorilla

characteristic: organism

text: Gorilla gorilla gorilla

text: Male

text: Male great apes


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LEICESTER

text: public

text: Sumatran orangutan

text: Pongo abelii

text: Pongo abelii

text: Male

text: Male great apes


text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

text: public

text: Bornean orangutan

text: Pongo pygmaeus

text: Pongo pygmaeus

text: Male

text: Male great apes


text: THE SAINSBURY LABORATORY

characteristic: INSDC first public

text: public

tag: Namespace:THE SAINSBURY LABORATORY

text: P. infestans grown in rye sucrose agar

characteristic: description

text: Arabidopsis thaliana

characteristic: lab host

text: Albugo laibachii Nc14

text: Albugo laibachii Nc14

text: Arabidopsis late blight


text: THE SAINSBURY LABORATORY

characteristic: INSDC last update

text: public

text: P. infestans infection on potato 2 dpi

text: Arabidopsis thaliana

text: Albugo laibachii Nc14

text: Albugo laibachii Nc14

text: Arabidopsis late blight

characteristic: title


text: THE SAINSBURY LABORATORY

text: public

text: P. infestans infection on potato 3 dpi

text: Arabidopsis thaliana

text: Albugo laibachii Nc14

text: Albugo laibachii Nc14

text: Arabidopsis late blight


text: THE SAINSBURY LABORATORY

text: public

text: Infection of A. thaliana by P. infestans in the presence of A. laibachii 1 dpi

text: Arabidopsis thaliana

text: Albugo laibachii Nc14

text: Albugo laibachii Nc14

text: Arabidopsis late blight


text: THE SAINSBURY LABORATORY

text: public

text: Infection of A. thaliana by P. infestans in the presence of A. laibachii 2 dpi

text: Arabidopsis thaliana

text: Albugo laibachii Nc14

text: Albugo laibachii Nc14

text: Arabidopsis late blight


text: THE SAINSBURY LABORATORY

text: public

text: Infection of A. thaliana by P. infestans in the presence of A. laibachii 3 dpi

text: Arabidopsis thaliana

text: Albugo laibachii Nc14

text: Albugo laibachii Nc14

text: Arabidopsis late blight


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: ES_12222015_R1_DOBD.Naph.CAT.July.2014.12C.rep1.16S.DNA

tag: Namespace:UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: collection date

text: seawater metagenome

characteristic: depth

text: surface seawater amplicon of V4-V5 region of 16S from 0.22-1 micron size fraction

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: seawater metagenome

characteristic: project name

text: seawater metagenome

text: PE Illumina Miseq 2x300

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ES_12222015_R1_DOBD.Naph.CAT.July.2014.13C.rep3.16S.DNA

characteristic: Submitter Id

text: seawater metagenome

characteristic: common name

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: PE Illumina Miseq 2x300


text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC last update

text: public

text: ES_12222015_R1_DOBD.Naph.CAT.July.2014.nolabel.rep1.16S.DNA

characteristic: collection date

text: seawater metagenome

characteristic: depth

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: seawater metagenome

text: seawater metagenome

text: PE Illumina Miseq 2x300

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

text: public

text: ES_12222015_R1_DOBD.Naph.POLA.July.2014.12C.rep1.16S.DNA

text: seawater metagenome

text: water

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: seawater metagenome

characteristic: project name

text: seawater metagenome

text: PE Illumina Miseq 2x300

characteristic: sequencing method


text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ES_12222015_R1_DOBD.Naph.POLA.July.2014.13C.rep1.16S.DNA

characteristic: Submitter Id

characteristic: collection date

text: seawater metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: PE Illumina Miseq 2x300


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: ES_12222015_R1_DOBD.Naph.POLA.July.2014.nolabel.rep1.16S.DNA

text: seawater metagenome

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: seawater metagenome

text: seawater metagenome

text: PE Illumina Miseq 2x300

characteristic: title


text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ES_12222015_R1_DOBD.Naph.SPOT.July.2014.12C.rep1.16S.DNA

text: seawater metagenome

text: water

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: seawater metagenome

characteristic: project name

text: seawater metagenome

text: PE Illumina Miseq 2x300

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: ES_12222015_R1_DOBD.Naph.SPOT.July.2014.13C.rep1.16S.DNA

characteristic: Submitter Id

characteristic: collection date

text: seawater metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: PE Illumina Miseq 2x300


text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ES_12222015_R1_DOBD.Q.CAT.January.2013.16S.DNA

text: seawater metagenome

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: seawater metagenome

text: seawater metagenome

text: PE Illumina Miseq 2x300

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

characteristic: SRA accession

text: ES_12222015_R1_DOBD.Q.CAT.January.2013.16S.RNA

text: seawater metagenome

text: water

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: seawater metagenome

characteristic: project name

text: seawater metagenome

text: PE Illumina Miseq 2x300

characteristic: sequencing method


text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ES_12222015_R1_DOBD.Q.CAT.July.2012.16S.DNA

characteristic: Submitter Id

characteristic: collection date

text: seawater metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: PE Illumina Miseq 2x300


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: ES_12222015_R1_DOBD.Q.CAT.July.2012.16S.RNA

text: seawater metagenome

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: seawater metagenome

text: seawater metagenome

text: PE Illumina Miseq 2x300

characteristic: title


text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ES_12222015_R1_DOBD.Q.CAT.October.2012.16S.RNA

text: seawater metagenome

text: water

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: seawater metagenome

characteristic: project name

text: seawater metagenome

text: PE Illumina Miseq 2x300

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: ES_12222015_R1_DOBD.Q.POLA.January.2013.16S.DNA

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text: seawater metagenome

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

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characteristic: Submitter Id

text: no template control PCR blank

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tag: Namespace:JUSTUS LIEBIG UNIVERSITAT

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text: Biogas plant input

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type: AMR curated data - CABBAGE

value: cefotaxime

value: resistant

value: Escherichia coli

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value: ampicillin

value: chloramphenicol

value: ciprofloxacin

value: ertapenem

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value: amoxicillin-clavulanic acid

value: cefepime

value: intermediate

value: ceftazidime


text: JUSTUS LIEBIG UNIVERSITAT

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

text: Escherichia

text: other (non-clinical isolate)

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text: Escherichia coli

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text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Biogas plant output

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Gut

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Milk sample

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: Homo sapiens

text: Stool sample

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: Homo sapiens

text: Stool sample

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Pooled faecal samples

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Pooled faecal samples

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Dust sample, fed cattle farm

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Sock swabs, dairy cattle farm

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Sock swabs, fattener

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Pooled faecal samples

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: Homo sapiens

text: Colonised wound

text: skin or soft tissue

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Port catheter infection

text: medical devices

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: Homo sapiens

text: Urine

text: urinary tract

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: Homo sapiens

text: Urine

text: urinary tract

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: Homo sapiens

text: Stool sample

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: Homo sapiens

text: Stool sample

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: Homo sapiens

text: Wound swab

text: skin or soft tissue

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Inner organs

text: internal organs and fluids

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Liver

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

text: Escherichia

text: other (non-clinical isolate)

text: Escherichia coli

text: Escherichia coli

text: Description of ST410 Escherichia coli


text: synthetic construct

characteristic: ArrayExpress-Species

text: SC

text: public

text: synthetic construct

characteristic: common name

text: synthetic construct

text: synthetic construct


text: Staphylococcus sp.

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

characteristic: sample description

text: Staphylococcus sp.

text: 4BL 30/7/08


text: Staphylococcus sp.

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 16BL april


text: Staphylococcus sp.

text: SC

characteristic: INSDC center name

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

characteristic: organism

text: Bovine

text: Staphylococcus sp.

text: 16BL 1/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 16BL 2/7/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 16BL 16/6/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 18BR April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 44BL 1/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 69FR April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 72BL 18/2/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 72BL 11/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 72BL 16/6/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 72BL 21/7/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 78FR yellow 10/11/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 78FR 18/2/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 78FR 1/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 81BR 1/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 81BL 16/6/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 81BL large 18/6/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 81BL large 21/5/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 101BR 4/12/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 101BL April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 101BR April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 101BR 21/7/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 104FR 21/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 95FR yellow 12/11/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 107FR 13/11/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 107BR 1/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 107BR April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 107BR 16/6/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 112BL 13/11/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 112BL 4/12/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 112BL April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 112BL 25/1/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 112BL 18/2/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 112BL 1/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 112BL 21/9/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 115FL white 4/12/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 116BL 30/7/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 116BL April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 116BL 21/7/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 116FL April


text: Staphylococcus aureus

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 116FL 21/7/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118FL 4/12/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118FL 15/1/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118FL 18/2/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118FR 1/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118FL April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118FL 16/6/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118FR 13/11/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118FR 18/2/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118FR April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118BR 15/11/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118BR 18/2/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118BR 1/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118BR 15/6/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 118BR April


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 127FL large 15/11/09


text: Staphylococcus aureus

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 128FL yellow 12/11/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 128FL 4/12/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 128BL 30/11/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 128BL 15/1/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 128BL 30/7/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 128BR 18/2/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 140BR 1/4/09


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 310BR 30/2/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 494 FL 30/7/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 722FL 30/7/08


text: Staphylococcus sp.

text: SC

text: public

text: Staphylococcus sp.

text: Staphylococcus sp.

text: Bovine

text: Staphylococcus sp.

text: 7495BL 30/9/08


text: Streptococus caprae

text: SC

text: public

text: Streptococus caprae

text: Streptococcus caprae

text: Streptococcus caprae

text: Strptococcus caprae


text: Pseudomonas aeruginosa

text: SC

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Streptococcus plurextorum

text: SC

text: public

text: Streptococcus plurextorum

text: Streptococcus plurextorum

text: Streptococcus plurextorum

text: Streptococcus plurextorum


text: Streptococcus sp.

text: SC

text: public

text: Streptococcus sp.

text: Streptococcus sp.

text: Streptococcus sp.

text: Streptococcus pharyngis


text: public

tag: Namespace:MRC-University of Glasgow Centre for Virus Research

characteristic: collection date

text: Complete genome

characteristic: description

text: Greece

characteristic: geographic location (country and/or sea)

text: Canis lupus familiaris

characteristic: host

text: Madin-Darby canine kidney (MDCK) cells

characteristic: lab host

text: Canid herpesvirus 1

text: Canid herpesvirus 1

characteristic: strain

text: Canid herpesvirus 1


text: MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: lung of an 11 day-old miniature Schnauzer

characteristic: bio material

text: Complete genome

text: Greece

text: Canis lupus familiaris

text: Madin-Darby canine kidney (MDCK) cells

text: Canid herpesvirus 1

text: Canid herpesvirus 1

text: Canid herpesvirus 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: kidney of a 14 day-old Dalmatian

text: Complete genome

text: Greece

text: Canis lupus familiaris

text: Madin-Darby canine kidney (MDCK) cells

text: Canid herpesvirus 1

text: Canid herpesvirus 1

text: Canid herpesvirus 1


characteristic: External Id

text: IATA-CSIC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Mother and meconium

text: human metagenome

text: human metagenome

text: 1st Run Samples


text: IATA-CSIC

text: public

text: human metagenome

characteristic: organism

text: human metagenome

text: 2nd Run Samples


text: IATA-CSIC

text: public

text: human metagenome

text: human metagenome

text: 3rd Run samples


text: UMR 1170 INSERM Institut Gustave Roussy

text: public

tag: Namespace:UMR 1170 INSERM Institut Gustave Roussy

text: ArrayExpress

characteristic: broker name

text: mouse cell line

characteristic: cell line

text: T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Cell lines were established after culture on MS5 feeder in MEMa medium supplemented with 10% FBS and 10ng/mL of murine IL7, FLT3L and SCF. MO467 cells were then grown in RPMI 1640 supplemented with 10% FBS and R152 with RPMI 1640 supplemented with 10% FBS and 10 ng/ml of murine IL7 SPRIworks (Beckman Coulter)

characteristic: description

text: T-cell acute lymphoblastic leukaemia

characteristic: disease

text: DNMT3A R882H Tet2-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: mouse cell line

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukaemia

text: NOTCH1 L1601PdelP Tet2+/+

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERISTY OF OXFORD

text: public

tag: Namespace:UNIVERISTY OF OXFORD

text: Prediction of Staphylococcus aureus antimicrobial resistance from whole genome sequencing

text: Staphylococcus

characteristic: genus

characteristic: isolate

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus samples

characteristic: title

value: methicillin

value: Staphylococcus aureus

value: tetracycline

value: penicillin

value: rifampin

value: fusidic acid

value: erythromycin


characteristic: External Id

text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: Protocols: Cells were sorted using flow cytometry based on the expression of GFP and CD4/CD8 markers EpiTect bisulfite Kit (QIAGEN) according to manufacturer's protocol Allprep Kit (QIAGEN) according to manufacturer's protocol RRBS libraries were prepared as described previously (Gu et al, Nature Protocols, 2011) with minor modifications. Genomic DNA (50-200ng) was digested for 5 hours with MspI, end-repaired, A tailed and ligated with T4 DNA ligase (Fermentas) to methylated Illumina adaptors. 150-400 bp fragments were gel-purified, bisulfite treated (EpiTect Bisulfite kit, Qiagen) and RRBS libraries were amplified by 15 cycles of PCR with PfUTurbo Cx hotstar DNA polymerase (Agilent) and indexed PE Illumina primers.

text: T-cell acute lymphoblastic leukemia

text: DNMT3A R882H Tet2-/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

characteristic: phenotype

text: Mus musculus


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC first public

text: public

text: ArrayExpress

text: T cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: T-cell acute lymphoblastic leukemia

characteristic: disease

text: NOTCH1 L1601PdelP Tet2-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8low) T-cells

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: NOTCH1 L1601PdelP Tet2-/-

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

text: Mus musculus

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC center name

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: NOTCH1 L1601PdelP Tet2+/+

text: Mus musculus

text: Mus musculus

text: single positive (CD8+) T-cells

text: Mus musculus

characteristic: title


text: UMR 1170 INSERM Institut Gustave Roussy

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: TCL1A Tet2+/+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: double positive (CD4low/CD8+) T-cells

characteristic: phenotype

text: Mus musculus


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC first public

text: public

text: ArrayExpress

text: T cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: T-cell acute lymphoblastic leukemia

text: TCL1A Tet2+/+

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UMR 1170 INSERM Institut Gustave Roussy

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

characteristic: disease

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

text: Mus musculus


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: NOTCH1 L1601PdelP Tet2+/+

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

text: Mus musculus

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC center name

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: Protocols: Cells were sorted using flow cytometry based on the expression of GFP and CD4/CD8 markers Allprep Kit (QIAGEN) according to manufacturer's protocol 5mC DNA Immunoprecipitation and sequencing (MeDIP-seq) of genomic DNA was performed as previously described (Williams et al., 2011, Nature 473, 343348.). In brief, genomic DNA was sonicated using the Bioruptor (Diagenode) to obtain fragments of approximately 200-500bp. Next, adaptors were ligated using the NEBNext DNA sample Prep Master Mix according to manufacturers instructions (New England Biolabs) and resuspended in 1 IP buffer (10mM NaPhosphate pH 7.0, 0.14M NaCl, 0.5% Triton X-100). 1ug of adaptor ligated DNA was briefly denatured and incubated 4h using an IgG control antibody or a monoclonal antibody directed against 5-mC. Dynabeads (Invitrogen) were added and incubated for additional 2h before immunoprecipitation, washing and elution by proteinase K digestion. The eluted DNA was PCR-amplified using indexed multiplex primers for illumina sequencing (New England Biolabs) and pooled.

text: T-cell acute lymphoblastic leukemia

text: mixed

text: Mus musculus

text: Mus musculus

text: mixed

text: Mus musculus

text: Input

characteristic: title


text: UMR 1170 INSERM Institut Gustave Roussy

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: DNMT3A R882H Tet2-/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

characteristic: phenotype

text: Mus musculus


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC first public

text: public

text: ArrayExpress

text: T cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: T-cell acute lymphoblastic leukemia

text: NOTCH1 L1601PdelP Tet2-/-

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8low) T-cells

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UMR 1170 INSERM Institut Gustave Roussy

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

characteristic: disease

text: NOTCH1 L1601PdelP Tet2-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

text: Mus musculus


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: NOTCH1 L1601PdelP Tet2+/+

text: Mus musculus

text: Mus musculus

text: single positive (CD8+) T-cells

text: Mus musculus

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC center name

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: TCL1A Tet2+/+

text: Mus musculus

text: Mus musculus

text: double positive (CD4low/CD8+) T-cells

text: Mus musculus

characteristic: title


text: UMR 1170 INSERM Institut Gustave Roussy

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: TCL1A Tet2+/+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

characteristic: phenotype

text: Mus musculus


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC first public

text: public

text: ArrayExpress

text: T cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: T-cell acute lymphoblastic leukemia

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UMR 1170 INSERM Institut Gustave Roussy

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: Protocols: Cells were sorted using flow cytometry based on the expression of GFP and CD4/CD8 markers Allprep Kit (QIAGEN) according to manufacturer's protocol 5-hmC DNA Immunoprecipitation and sequencing (hMeDIP-seq) of genomic DNA was performed as previously described (Williams et al., 2011, Nature 473, 343348.). In brief, genomic DNA was sonicated using the Bioruptor (Diagenode) to obtain fragments of approximately 200-500bp. Next, adaptors were ligated using the NEBNext DNA sample Prep Master Mix according to manufacturers instructions (New England Biolabs) and resuspended in 1 IP buffer (10mM NaPhosphate pH 7.0, 0.14M NaCl, 0.5% Triton X-100). 1ug of adaptor ligated DNA was briefly denatured and incubated 4h using an IgG control antibody or a polyclonal antibody directed against 5-hmC. Dynabeads (Invitrogen) were added and incubated for additional 2h before immunoprecipitation, washing and elution by proteinase K digestion. The eluted DNA was PCR-amplified using indexed multiplex primers for illumina sequencing (New England Biolabs) and pooled.

text: T-cell acute lymphoblastic leukemia

characteristic: disease

text: mixed

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: mixed

text: Mus musculus

text: Input


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: DNMT3A R882H Tet2-/-

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

text: Mus musculus

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC center name

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: NOTCH1 L1601PdelP Tet2-/-

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8low) T-cells

text: Mus musculus

characteristic: title


text: UMR 1170 INSERM Institut Gustave Roussy

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: NOTCH1 L1601PdelP Tet2-/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

characteristic: phenotype

text: Mus musculus


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC first public

text: public

text: ArrayExpress

text: T cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: T-cell acute lymphoblastic leukemia

text: NOTCH1 L1601PdelP Tet2+/+

text: Mus musculus

text: Mus musculus

text: single positive (CD8+) T-cells

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UMR 1170 INSERM Institut Gustave Roussy

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

characteristic: disease

text: TCL1A Tet2+/+

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: double positive (CD4low/CD8+) T-cells

text: Mus musculus


text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: TCL1A Tet2+/+

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

text: Mus musculus

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 1170 INSERM Institut Gustave Roussy

characteristic: INSDC center name

text: public

text: ArrayExpress

text: T cell

text: house mouse

text: T-cell acute lymphoblastic leukemia

text: Mus musculus

text: Mus musculus

text: double positive (CD4+/CD8+) T-cells

text: Mus musculus

characteristic: title


text: UZH

text: public

characteristic: Submitter Id

text: Limnohabitans sp. Rim47

characteristic: organism

text: Limnohabitans sp. Rim47


text: UZH

characteristic: INSDC first public

text: public

text: Limnohabitans sp. Rim47

text: Limnohabitans sp. Rim47

text: DNA


E-MTAB-4168:MICHIGAN HINDGUT @ 24H_1

text: public

text: E-MTAB-4168:MICHIGAN HINDGUT @ 24H_1

tag: Namespace:UCSF Department of Pediatrics, Division of Pediatric Gastroenterology

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic stem cells derived human intestinal organoids

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Differentiation of hESCs and organoids was carried out as previously published, except where noted in the text (Finkbeiner et al., 2015b; McCracken et al., 2011). In brief, endoderm was generated by adding ActivinA (100ng/mL) for 3 consecutive days in RPMI supplemented with 0%, 0.2% and 2.0% HyClone FBS. FGF4 (500ng/mL) plus CHIR99021 (2uM) were then added to endoderm cultures, and media was replaced daily for 10 days. Spheroids were collected on d5, d7 and d10, and were embedded in matrigel, and overlayed with growth medium as previously described (Finkbeiner et al., 2015b) containing RSPO2 conditioned medium (Bell et al., 2008), NOGGIN conditioned medium (Heijmans et al., 2013) and EGF. RNA was isolated directly from tissue culture plates using RNeasy Mini Kit (Qiagen). Media was aspirated and for organoids Matrigel was allowed to dissolve for 1 hour at room 4 degrees. Lysis buffer added directly onto plates using RLT buffer (Qiagen) and RNA isolated as per protocol. RNA concentration and purity were assessed using Nanodrop spectrophotometer and bioanalyzed using Agilent RNA 6000 Nano Kit (260/280 > 1.7 and 260/230 >1.7, RIN>8). We used 10ng of RNA to generate libraries (TrueSeq Kit, Illumina). A small aliquot of libraries were bioanalyzed and run on MiSeq to allow for normalization of reads.

text: CHIR99021/FGF4-enriched media

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN HINDGUT @ 24H_1


E-MTAB-4168:MICHIGAN HINDGUT @ 24H_2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSF Department of Pediatrics, Division of Pediatric Gastroenterology

text: public

text: E-MTAB-4168:MICHIGAN HINDGUT @ 24H_2

text: ArrayExpress

text: human

characteristic: description

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN HINDGUT @ 24H_2


E-MTAB-4168:MICHIGAN HINDGUT @ 24H_3

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4168:MICHIGAN HINDGUT @ 24H_3

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN HINDGUT @ 24H_3


E-MTAB-4168:MICHIGAN HINDGUT @72H_1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4168:MICHIGAN HINDGUT @72H_1

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN HINDGUT @72H_1


E-MTAB-4168:MICHIGAN HINDGUT @72H_2

characteristic: INSDC center name

text: public

text: E-MTAB-4168:MICHIGAN HINDGUT @72H_2

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN HINDGUT @72H_2

characteristic: title


E-MTAB-4168:MICHIGAN HINDGUT @72H_3

text: public

text: E-MTAB-4168:MICHIGAN HINDGUT @72H_3

characteristic: Submitter Id

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN HINDGUT @72H_3


E-MTAB-4168:MICHIGAN OGANOID @ 7D_2

characteristic: INSDC first public

text: public

text: E-MTAB-4168:MICHIGAN OGANOID @ 7D_2

characteristic: age

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN OGANOID @ 7D_2


E-MTAB-4168:MICHIGAN OGANOID @ 7D_3

text: public

text: E-MTAB-4168:MICHIGAN OGANOID @ 7D_3

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN OGANOID @ 7D_3


E-MTAB-4168:MICHIGAN ORGANOID @10D_1

text: public

text: E-MTAB-4168:MICHIGAN ORGANOID @10D_1

text: ArrayExpress

text: human

characteristic: common name

text: CHIR99021/FGF4-enriched media

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN ORGANOID @10D_1


E-MTAB-4168:MICHIGAN ORGANOID @10D_2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4168:MICHIGAN ORGANOID @10D_2

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN ORGANOID @10D_2


E-MTAB-4168:MICHIGAN ORGANOID @10D_3

characteristic: INSDC last update

text: public

text: E-MTAB-4168:MICHIGAN ORGANOID @10D_3

text: ArrayExpress

text: human

characteristic: description

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN ORGANOID @10D_3


E-MTAB-4168:MICHIGAN ORGANOID @5D_1

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4168:MICHIGAN ORGANOID @5D_1

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN ORGANOID @5D_1


E-MTAB-4168:MICHIGAN ORGANOID @5D_2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4168:MICHIGAN ORGANOID @5D_2

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN ORGANOID @5D_2


E-MTAB-4168:MICHIGAN SPHEROID @ 10D_1

characteristic: INSDC center name

text: public

text: E-MTAB-4168:MICHIGAN SPHEROID @ 10D_1

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN SPHEROID @ 10D_1

characteristic: title


E-MTAB-4168:MICHIGAN SPHEROID @ 10D_2

text: public

text: E-MTAB-4168:MICHIGAN SPHEROID @ 10D_2

characteristic: Submitter Id

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN SPHEROID @ 10D_2


E-MTAB-4168:MICHIGAN SPHEROID @ 10D_3

characteristic: INSDC first public

text: public

text: E-MTAB-4168:MICHIGAN SPHEROID @ 10D_3

characteristic: age

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN SPHEROID @ 10D_3


E-MTAB-4168:MICHIGAN SPHEROID @ 5D_1

text: public

text: E-MTAB-4168:MICHIGAN SPHEROID @ 5D_1

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN SPHEROID @ 5D_1


E-MTAB-4168:MICHIGAN SPHEROID @ 5D_2

text: public

text: E-MTAB-4168:MICHIGAN SPHEROID @ 5D_2

text: ArrayExpress

text: human

characteristic: common name

text: CHIR99021/FGF4-enriched media

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN SPHEROID @ 5D_2


E-MTAB-4168:MICHIGAN SPHEROID @ 5D_3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4168:MICHIGAN SPHEROID @ 5D_3

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN SPHEROID @ 5D_3


E-MTAB-4168:MICHIGAN SPHEROID @ 7D_1

characteristic: INSDC last update

text: public

text: E-MTAB-4168:MICHIGAN SPHEROID @ 7D_1

text: ArrayExpress

text: human

characteristic: description

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN SPHEROID @ 7D_1


E-MTAB-4168:MICHIGAN SPHEROID @ 7D_2

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4168:MICHIGAN SPHEROID @ 7D_2

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN SPHEROID @ 7D_2


E-MTAB-4168:MICHIGAN SPHEROID @ 7D_3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4168:MICHIGAN SPHEROID @ 7D_3

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MICHIGAN SPHEROID @ 7D_3


E-MTAB-4168:UCSF HINDGUT @96H_1

characteristic: INSDC center name

text: public

text: E-MTAB-4168:UCSF HINDGUT @96H_1

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: UCSF HINDGUT @96H_1

characteristic: title


E-MTAB-4168:UCSF HINDGUT @96H_2

text: public

text: E-MTAB-4168:UCSF HINDGUT @96H_2

characteristic: Submitter Id

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: UCSF HINDGUT @96H_2


E-MTAB-4168:UCSF HINDGUT @96H_3

characteristic: INSDC first public

text: public

text: E-MTAB-4168:UCSF HINDGUT @96H_3

characteristic: age

text: ArrayExpress

text: human

text: CHIR99021/FGF4-enriched media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: UCSF HINDGUT @96H_3


text: public

tag: Namespace:European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen

text: ArrayExpress

characteristic: broker name

text: Protocols: Standard methods were used for culturing C. elegans at 20oC (Brenner, 1974). The LIR-3::GFP strain (OP312) was generated by biolistic transformation to produce an integrated, low-copy transgene of the WRM0637aB05 fosmid, recombineered with GFP:3XFLAG in frame at the carboxy terminus of the lir-3 locus (Sarov et al., 2012). To synchronize animals, eggs were collected from gravid hermaphrodites by hypochlorite bleaching and hatched overnight in M9 buffer. The desired amount of L1 animals were subsequently cultured on nematode growth medium agar (NGM) plates seeded with OP50 bacteria. Worms were grown to L4 stage and total RNA was extracted using TRIzol Reagent (Life Technologies) according to the manufacturers description. For polyA RNA sequencing, the TruSeq Sample Preparation V2 Kit was used (Illumina). For non-coding RNA sequencing (mRNA, snoRNA, tRNA and large ncRNA), a protocol has been described previously (Ikegami and Lieb, 2013). Briefly, total RNA was treated with DNAseI and depleted from rRNA with the Ribominus Eukaryote Kit (#A10837-08, Invitrogen). Fragmentation of RNA was performed using a Fragmentation Buffer (#AM8740, Ambion) and cDNA was generated using the Superscript II Kit (Invitrogen)

text: L4 larva

characteristic: developmental stage

text: deletion in Lir3 gene

characteristic: genetic modification

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen

text: public

text: ArrayExpress

text: L4 larva

text: deletion in Lir3 gene

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: description

text: L4 larva

text: start codon loss in Lir3 gene

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: L4 larva

text: wild type genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


characteristic: INSDC center name

text: public

text: ArrayExpress

text: L4 larva

text: deletion in Lir3

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

characteristic: title


text: public

characteristic: Submitter Id

text: ArrayExpress

text: L4 larva

text: start codon loss in Lir3

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: Caenorhabditis elegans


characteristic: INSDC first public

text: public

tag: Namespace:European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen, The Netherlands

text: ArrayExpress

text: Protocols: Worm staging was achieved by bleaching and L1 starvation. Arrested L1 animals were plated on peptone-enriched NGM plates seeded with OP50 bacteria and grown for 48 hours for L4 collection at 20C. Samples were crosslinked with 2% formaldehyde for 30 minutes at room temperature and then quenched with 1 M Tris pH 7.5. The pelleted worms were subsequently flash frozen in liquid nitrogen and stored at -80C. Samples were sonicated using a microtip to obtain mostly 200 to 800 bp DNA fragments. For each sample, 2.2 or 4.4 mg of cell extract was immunoprecipitated using a goat anti-GFP, GoatV (gift from Kevin White). The enriched DNA fragments and input control (genomic DNA from the same sample) for two biological replicates were used for library preparation and sequencing as previously described (Kasper et al., 2014). Briefly, samples were libraried and multiplexed using the Ovation Ultralow DR Multiplex Systems 1-8 and 9-16 (NuGEN Technologies Inc., San Carlos, CA) following the manufacturers protocol except Qiagen MinElute PCR purification kits were used to isolate the DNA. Library size selection in the 200-800 bp range was achieved using the SPRIselect reagent kit (Beckman Coulter, Inc., Brea, CA

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Input


text: European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen, The Netherlands

text: public

text: ArrayExpress

characteristic: broker name

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


E-MTAB-4175:Sample 1 - input

text: public

text: E-MTAB-4175:Sample 1 - input

tag: Namespace:Gene Center Ludwig-Maximilians Universitaet

text: ArrayExpress

text: baker's yeast

characteristic: common name

text: Protocols: 600 ml BY 4741 S. cerevisiae culture in YPED media Immunoprecipitation was performed with 75 l of IgG SepharoseTM 6 Fast Flow beads (GE Healthcare) for 3 hours at 4C on a turning wheel. 30 l of Input sample was taken before immunoprecipitation and stored at 4C. IP and Input samples were reverse cross-linking for 2 hours with Proteinase K at 65C and purified using Quiagen MinElute Kit. Samples were digested with 2.5 l RNase A/T1 Mix (2 mg/ml RNase A, 5000 U/ml RNase T1; Fermentas) at 37C for 1 h, purified and eluted in 50 l H2O. ChIP-Seq libraries were prepared using NEB Next library preparation kit following manufacturers instructions using the complete 50 l as input. 2 l of 1.7 M adapters containing a GGAT barcode and 2 l of a 0.25 M adapter containing a CACT barcode were used for ligation with Input and IP samples, respectively. The final library was amplified for 22 cycles using Phusion Polymerase and purified using Agencourt Magnetic beads.

text: MATa his31 leu20 met150 ura30 Sua7::TAP::HIS3MX6

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Sample 1 - input


E-MTAB-4175:Sample 2 - IP

text: Gene Center Ludwig-Maximilians Universitaet

text: public

text: E-MTAB-4175:Sample 2 - IP

text: ArrayExpress

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: Sample 2 - IP


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Department of Animal and Plant Sciences, University of Sheffield

text: ArrayExpress

characteristic: days post inoculation

text: Protocols: Total RNA was extracted using Trizol according to the manufacturer's protocol Hypocotyls or the upper 1 cm of root was collected from 25 plants per biological replicate Plants were grown at 100 umol m-2 s-1 irradiance, 9 h photoperiod, day time temperature of 20oC and a night time temperature of 18 oC Plants were infected with 2E6 spores of P. brassicae 14 days after germination RNA library preparation

characteristic: ecotype

text: Arabidopsis

text: Arabidopsis

text: hypocotyl

characteristic: organism part

text: Arabidopsis


characteristic: ENA-FIRST-PUBLIC

text: Department of Animal and Plant Sciences, University of Sheffield

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: description

text: Arabidopsis

text: Arabidopsis

text: hypocotyl

text: Arabidopsis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: Protocols: Total RNA was extracted using Trizol according to the manufacturer's protocol Hypocotyls or the upper 1 cm of root was collected from 25 plants per biological replicate Plants were grown at 100 umol m-2 s-1 irradiance, 9 h photoperiod, day time temperature of 20oC and a night time temperature of 18 oC RNA library preparation

text: Plasmodiophora brassicae

characteristic: disease

text: Arabidopsis

text: Arabidopsis

text: hypocotyl

text: Arabidopsis


characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Arabidopsis

characteristic: organism

text: Arabidopsis

text: root structure

text: Arabidopsis

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: days post inoculation

text: Plasmodiophora brassicae

text: Arabidopsis

text: Arabidopsis

text: root structure

text: Arabidopsis


D. orbita FHAP1

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita FHAP1

text: Dicathais orbita

text: Dicathais orbita

text: Female hypobranchial gland 1, August, Breeding season, 2014


D. orbita FHAP2

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita FHAP2

text: Dicathais orbita

text: Dicathais orbita

text: Female hypobranchial gland 2, August, Breeding season, 2014


D. orbita FH1

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita FH1

text: Dicathais orbita

text: Dicathais orbita

text: Female hypobranchial gland 1, January, 2015


D. orbita FH2

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita FH2

text: Dicathais orbita

text: Dicathais orbita

text: Female hypobranchial gland 2, January, 2015


D. orbita MH1

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita MH1

text: Dicathais orbita

text: Dicathais orbita

text: Male hypobranchial gland 1, January, 2015


D. orbita MH2

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita MH2

text: Dicathais orbita

text: Dicathais orbita

text: Male hypobranchial gland 2, January, 2015


D. orbita FF1

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita FF1

text: Dicathais orbita

text: Dicathais orbita

text: Female foot 1, January, 2015


D. orbita FF2

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita FF2

text: Dicathais orbita

text: Dicathais orbita

text: Female foot 2 January, 2015


D. orbita MF1

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita MF1

text: Dicathais orbita

text: Dicathais orbita

text: Male foot 1, January, 2015


D. orbita CG

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita CG

text: Dicathais orbita

text: Dicathais orbita

text: Capsule gland, January, 2015


D. orbita AG

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita AG

text: Dicathais orbita

text: Dicathais orbita

text: Albumen gland, January, 2015


D. orbita PG1

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita PG1

text: Dicathais orbita

text: Dicathais orbita

text: Prostate gland, January, 2015


D. orbita MA1

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita MA1

text: Dicathais orbita

text: Dicathais orbita

text: Mantle 1, January, 2015


D. orbita MF2

text: SOUTHERNCROSSPLANTSCIENCE

text: public

text: D. orbita MF2

text: Dicathais orbita

text: Dicathais orbita

text: Male foot 2, January, 2015


text: iBiMED - Institute of Biomedicine

text: public

tag: Namespace:iBiMED - Institute of Biomedicine

text: Candida albicans

text: Candida albicans


M. cephalus1

tag: attribute

text: ARO

text: public

text: M. cephalus1

text: flathead mullet

characteristic: common name

text: Whole genome sequencing of DNA of a single male from the mapping population using Illumina paired-end technology (HiSeq 2500; Illumina, CA).

text: Israel

characteristic: geographic location (region and locality)

text: Mugil cephalus

text: Mugil cephalus

text: male

characteristic: sex

text: fin

characteristic: tissue type

text: Mugil cephalus


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:McGill University and Genome Quebec Innovation Centre

text: human

text: Tissue Controls

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WELLCOME TRUST SANGER INSTITUTE

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:WELLCOME TRUST SANGER INSTITUTE

text: house mouse

text: Eed (wt/hypo) derived from Eed(hypo/hypo) father

text: embryo

characteristic: dev stage

text: Mus musculus

text: Mus musculus

text: Eed (wt/hypo) Hom1 8 cell


text: WELLCOME TRUST SANGER INSTITUTE

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: house mouse

text: embryo

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Eed (wt/hypo) Hom2 8 cell


characteristic: ENA-CHECKLIST

text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus

text: Eed (wt/hypo) Hom3 8 cell

characteristic: title


text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: house mouse

characteristic: common name

text: embryo

text: Mus musculus

text: Mus musculus

text: Eed (wt/hypo) Hom4 8 cell


text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: house mouse

text: Eed (wt/hypo) derived from Eed(wt/hypo) father

text: embryo

text: Mus musculus

text: Mus musculus

text: Eed (wt/hypo) Het1 8 cell


text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus

text: Eed (wt/hypo) Het2 8 cell


text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: house mouse

text: embryo

text: Eed (+/hypo)

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Eed (wt/hypo) Het1 8 cell


text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: house mouse

text: embryo

text: Mus musculus

text: Mus musculus


text: McGill University and Genome Quebec Innovation Centre

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: HANYANG UNIVERSITY

text: public

tag: Namespace:HANYANG UNIVERSITY

text: human

text: cancer tissue

text: Homo sapiens

text: Homo sapiens

text: cervix

characteristic: tissue lib

text: cancer tissue


characteristic: ENA-FIRST-PUBLIC

text: HANYANG UNIVERSITY

text: public

text: human

text: paired case2

text: Homo sapiens

text: Homo sapiens

text: cervix

text: normal tissue


text: HANYANG UNIVERSITY

characteristic: INSDC last update

text: public

text: human

text: paired case 10

text: Homo sapiens

text: Homo sapiens

text: cervix

text: normal tissue


text: HANYANG UNIVERSITY

text: public

characteristic: INSDC status

text: human

text: paired case11

text: Homo sapiens

text: Homo sapiens

text: cervix

text: normal tissue


text: HANYANG UNIVERSITY

text: public

text: human

text: paired case13

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: cervix

text: normal tissue


characteristic: ENA-LAST-UPDATE

text: HANYANG UNIVERSITY

text: public

text: human

text: paired case16

text: Homo sapiens

text: Homo sapiens

text: cervix

text: normal tissue


characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run2.Blank.NA.NA.Blank.Blank.515C.926R.a

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

text: public

text: Run2.Blank.NA.NA.Blank.Blank.515C.926R.b

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

characteristic: SRA accession

text: Run2.Blank.NA.NA.Blank.Blank.515C.926R.c

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run2.Blank.NA.NA.Blank.Blank.515C.926R.d

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run2.Blank.NA.NA.Blank.Blank.515C.926R.e

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run2.Blank.NA.NA.Blank.Blank.515C.926R.f

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run2.NA.NA.NA.Lab.EvenMockV1.515C.926R.a

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run2.NA.NA.NA.Lab.EvenMockV1.515C.926R.b

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run2.NA.NA.NA.Lab.StaggeredMockV1.515C.926R.a

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run2.NA.NA.NA.Lab.StaggeredMockV1.515C.926R.b

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run20.Blank.NA.NA.Blank.Blank.515C.926R.a

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run20.Blank.NA.NA.Blank.Blank.515C.926R.b

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run20.Blank.NA.NA.Blank.Blank.515C.926R.c

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run20.NA.NA.NA.Lab.EvenMockV2.515C.926R.a

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run20.NA.NA.NA.Lab.EvenMockV2.515C.926R.b

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run20.NA.NA.NA.Lab.EvenMockV2.515C.926R.c

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run20.NA.NA.NA.Lab.StaggeredMockV2.515C.926R.a

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run20.NA.NA.NA.Lab.StaggeredMockV2.515C.926R.b

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run20.NA.NA.NA.Lab.StaggeredMockV2.515C.926R.c

text: marine mock community

text: synthetic metagenome

text: synthetic metagenome


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.a

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.b

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.c

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.d

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.e

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.f

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.g

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.h

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.i

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.j

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.k

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.l

text: no template control PCR blank

text: unidentified

text: unidentified


text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Run4.Blank.NA.NA.Blank.Blank.515C.926R.m

text: no template control PCR blank

text: unidentified

text: unidentified