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text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: cow

text: environmental samples

characteristic: organism

text: y

text: GACTAGGGATTGGARTGG

text: 50 g

text: C.PRO.QIAG.c

text: environmental samples

text: C.PRO.QIAG.c

characteristic: title

text: C.PRO.QIAG.c


characteristic: ENA-CHECKLIST

text: CCME-COLORADO

text: public

text: C.PRO.PCSA.b

text: n

text: rumen

text: C.PRO.PCSA.b

text: C.PRO.PCSA.b

text: meadow pasture hay

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: environmental samples

text: y

characteristic: public

text: GACTAGGGATTGGARTGG

characteristic: reverseprimer

text: 50 g

characteristic: sample id

text: C.PRO.PCSA.b

characteristic: sample name

text: environmental samples

characteristic: taxon id

text: C.PRO.PCSA.b

text: C.PRO.PCSA.b


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: C.PRO.PCSA.c

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

characteristic: depth

text: C.PRO.PCSA.c

characteristic: description

text: C.PRO.PCSA.c

text: meadow pasture hay

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: cow

text: environmental samples

characteristic: organism

text: y

text: GACTAGGGATTGGARTGG

text: 50 g

text: C.PRO.PCSA.c

text: environmental samples

text: C.PRO.PCSA.c

characteristic: title

text: C.PRO.PCSA.c


characteristic: ENA-CHECKLIST

text: CCME-COLORADO

text: public

text: C.PRO.RBBC.a

text: n

text: rumen

text: C.PRO.RBBC.a

text: C.PRO.RBBC.a

text: meadow pasture hay

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: environmental samples

text: y

characteristic: public

text: GACTAGGGATTGGARTGG

characteristic: reverseprimer

text: 50 g

characteristic: sample id

text: C.PRO.RBBC.a

characteristic: sample name

text: environmental samples

characteristic: taxon id

text: C.PRO.RBBC.a

text: C.PRO.RBBC.a


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: n

text: free living

characteristic: biotic relationship

characteristic: collection date

text: sediment metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: ENVO:montane grasslands and shrubland biome

text: ENVO:alluvial plain

text: ENVO:sediment

text: radioactive sediment

text: GAZ:United States of America

text: sediment metagenome

characteristic: organism

text: n

text: 0.1, gram

text: sediment metagenome

characteristic: title

text: Sediment sample from alluvial plain in Rifle, Colorado


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: free living

text: sediment metagenome

characteristic: elevation

characteristic: env biome

text: ENVO:alluvial plain

characteristic: env feature

text: ENVO:sediment

characteristic: env matter

text: radioactive sediment

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: sediment metagenome

text: n

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: sediment metagenome

characteristic: taxon id


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: n

characteristic: collection date

text: indoor metagenome

characteristic: common name

characteristic: depth

text: ENVO:terrestrial biome

text: ENVO:anthropogenic feature

text: ENVO:dust

text: GAZ:United States of America

text: indoor metagenome

text: y

text: Office

characteristic: room

text: 0.1, gram

text: indoor metagenome

text: Summer

characteristic: season

characteristic: unit


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: indoor metagenome

characteristic: description

characteristic: elevation

text: ENVO:terrestrial biome

characteristic: env biome

text: ENVO:anthropogenic feature

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: indoor metagenome

characteristic: organism

text: y

characteristic: public

text: Kitchen

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: indoor metagenome

text: Winter

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: n

characteristic: collection date

text: indoor metagenome

characteristic: common name

characteristic: depth

text: ENVO:terrestrial biome

text: ENVO:anthropogenic feature

text: ENVO:dust

text: GAZ:United States of America

text: indoor metagenome

text: y

text: Bathroom

characteristic: room

text: 0.1, gram

text: indoor metagenome

text: Summer

characteristic: season

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: indoor metagenome

characteristic: description

characteristic: elevation

text: ENVO:terrestrial biome

characteristic: env biome

text: ENVO:anthropogenic feature

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: indoor metagenome

characteristic: organism

text: y

characteristic: public

text: Kitchen

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: indoor metagenome

text: Summer

characteristic: unit


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: n

characteristic: collection date

text: indoor metagenome

characteristic: common name

characteristic: depth

text: ENVO:terrestrial biome

text: ENVO:anthropogenic feature

text: ENVO:dust

text: GAZ:United States of America

text: indoor metagenome

text: y

text: Balcony

characteristic: room

text: 0.1, gram

text: indoor metagenome

text: Summer

characteristic: season

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: indoor metagenome

characteristic: description

characteristic: elevation

text: ENVO:terrestrial biome

characteristic: env biome

text: ENVO:anthropogenic feature

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: indoor metagenome

characteristic: organism

text: y

characteristic: public

text: Bedroom

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: indoor metagenome

text: Winter

characteristic: taxon id


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: n

characteristic: collection date

text: indoor metagenome

characteristic: common name

characteristic: depth

text: ENVO:terrestrial biome

text: ENVO:anthropogenic feature

text: ENVO:dust

text: GAZ:United States of America

text: indoor metagenome

text: y

text: Bedroom

characteristic: room

text: 0.1, gram

text: indoor metagenome

text: Summer

characteristic: season

characteristic: unit


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: indoor metagenome

characteristic: description

characteristic: elevation

text: ENVO:terrestrial biome

characteristic: env biome

text: ENVO:anthropogenic feature

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: indoor metagenome

characteristic: organism

text: y

characteristic: public

text: LR

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: indoor metagenome

text: Summer

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: n

characteristic: collection date

text: indoor metagenome

characteristic: common name

characteristic: depth

text: ENVO:terrestrial biome

text: ENVO:anthropogenic feature

text: ENVO:dust

text: GAZ:United States of America

text: indoor metagenome

text: y

text: LR

characteristic: room

text: 0.1, gram

text: indoor metagenome

text: Winter

characteristic: season

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: indoor metagenome

characteristic: description

characteristic: elevation

text: ENVO:terrestrial biome

characteristic: env biome

text: ENVO:anthropogenic feature

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: indoor metagenome

characteristic: organism

text: y

characteristic: public

text: Bathroom

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: indoor metagenome

text: Winter

characteristic: unit


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: n

characteristic: collection date

text: indoor metagenome

characteristic: common name

characteristic: depth

text: ENVO:terrestrial biome

text: ENVO:anthropogenic feature

text: ENVO:dust

text: GAZ:United States of America

text: indoor metagenome

text: y

text: Balcony

characteristic: room

text: 0.1, gram

text: indoor metagenome

text: Winter

characteristic: season

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: indoor metagenome

characteristic: description

characteristic: elevation

text: ENVO:terrestrial biome

characteristic: env biome

text: ENVO:anthropogenic feature

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: indoor metagenome

characteristic: organism

text: y

characteristic: public

text: Outside

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: indoor metagenome

text: Fall

characteristic: taxon id


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: n

characteristic: collection date

text: indoor metagenome

characteristic: common name

characteristic: depth

text: ENVO:terrestrial biome

text: ENVO:anthropogenic feature

text: ENVO:dust

text: GAZ:United States of America

text: indoor metagenome

text: y

text: LR

characteristic: room

text: 0.1, gram

text: indoor metagenome

text: Fall

characteristic: season

characteristic: unit


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: indoor metagenome

characteristic: description

characteristic: elevation

text: ENVO:terrestrial biome

characteristic: env biome

text: ENVO:anthropogenic feature

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: indoor metagenome

characteristic: organism

text: y

characteristic: public

text: Balcony

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: indoor metagenome

text: Fall

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: SDSU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vibrio cholerae O1 str. R-18304

text: Vibrio cholerae O1 str. R-18304

text: Complete genome sequencing reads of Vibrio cholerae O1 str. R-18304


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: SBR

text: public

text: ice krill

characteristic: common name

text: mRNA isolation from whole animals and 20 eyestalks

characteristic: description

text: Euphausia crystallorophias

text: Euphausia crystallorophias

text: Euphausia crystallorophias RNAseq


text: SRA-Webin

text: SNU

text: public

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S data of Korean twin gut microbiome


Day 313 home

text: SRA-Webin

text: UMCU

text: public

text: Day 313 home

text: human gut metagenome

text: human gut metagenome

text: Selective Decontamination of the Digestive tract (SDD) selects for antibiotic resistance in patient gut microbiota


text: SRA-Webin

text: COEC

text: public

text: Quercus suber

text: Quercus suber

text: Bud sprouting (bud phases 3 and 4)


text: CCME-COLORADO

text: public

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:body

characteristic: body habitat

text: UBERON:multi-tissue structure

characteristic: body product

text: UBERON:multi-cellular organism

characteristic: body site

characteristic: collection date

text: insect metagenome

characteristic: depth

text: caterpillar frass

text: caterpillar frass

characteristic: elevation

text: ENVO:Tropical and subtropical moist broadleaf forest biome

characteristic: env biome

text: ENVO:forest

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: GAZ:Panama

characteristic: geographic location (country and/or sea)

text: butterfly

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: insect metagenome

text: n

characteristic: public

text: 0.1, gram

characteristic: sample id

text: insect metagenome

characteristic: taxon id

text: Bacterial community dynamics in Heliconius erato


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: EBI-UI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 18S rRNA genes, density gradient fractionation 11 of sample L1, which was labeled by 13C for 5 days

characteristic: description

text: root metagenome

characteristic: organism

text: root metagenome

text: switchgrass root microboes

characteristic: title


text: SRA-Webin

text: ITB-CNR

text: public

text: human

characteristic: common name

text: DNA from blood sample

text: Homo sapiens

text: Homo sapiens

text: Genomic DNA


text: SRA-Webin

text: BGI

text: public

text: BGI

characteristic: broker name

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MetaHIT-MGS

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from spanish


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: SRA-Webin

text: CAM

text: public

characteristic: Submitter Id

text: fruit fly

characteristic: common name

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: female

characteristic: sex

text: ovaries

characteristic: tissue type

text: Wolbachia variants

characteristic: title


text: WUSL

text: public

characteristic: collection date

text: Low fat high plant polysacharides

characteristic: diet

text: host associated

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: house mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: Mouse fecal sample for COPRO-Seq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: UMCU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Sample from omental metastasis 1 patient 1


text: SRA-Webin

text: UD

text: public

text: Skin

characteristic: body site

characteristic: collection date

text: pig

text: Cotton swab sample from the skin region of swine carcass A on day 1.

characteristic: description

text: Deciduous woodland

characteristic: environment (biome)

text: Midwest Temperate Forest

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Carcass A

characteristic: host subject id

text: metagenome

text: Sus scrofa

text: Swine carrion decomposition

text: Cotton swab

characteristic: sample collection device or method

text: Sus scrofa

text: Pyrosequencing

text: Swine carrion decomposition, Ohio, USA-2010

characteristic: title

text: Exclusion

characteristic: treatment


Morpheus F9

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: SCKCEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Morpheus F9

unit: m

characteristic: depth

text: Deep Subsurface

text: Subterrestrial Marine sediment

text: Clay layer

text: sediment

text: Belgium, Campine Region

characteristic: geographic location (elevation)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Morpheus 16S

characteristic: project name

text: Vertical Piezometer Morpheus

text: sediment metagenome

characteristic: sequencing method

text: 16S rDNA Variable region

characteristic: target gene

characteristic: target subfragment

text: Filter 9


text: EMBL-EBI

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: These are laboratory strains genetically engineered from strain SN148 which were not submitted to infection assays. Strains CIP,t1,t2 have 0, 1 and 2 copies of a Leu-tRNA(CAG) gene inserted at RPS10 locus, respectively. Strain t2ko1 is derived from strain t2 by deletion of one copy of the Ser-tRNA(CAG) gene. Strain t2ko2 is derived from t2ko1 by deletion of the second copy of the Ser-tRNA(CAG) gene. Samples were taken from the stock and plated onto YPD agar media containing fluconazole. One colony was selected for growth in liquid YPD until exponential phase. DNA extraction was carried out using the Genomic-tip 100/G kit (Qiagen) according to the manufacturer's protocol. Quantification and quality assessment were performed using the Picogreen fluorescence based quantification assay. Libraries were constructed using Illumina TruSeq DNA Sample Prep standard protocol. Briefly, 5 ug of high molecular weight genomic DNA (gDNA) was fragmented by Covaris sonication device. Following sonication, DNA fragments were end-repaired and A-tailed. Adapters were then ligated via a 3' thymine overhang. Finally, ligated fragments were amplified by PCR (10 cycles). insert sizes were about 400-500 bp as evaluated in an Agilent DNA 1000 Analyzer Chip.

characteristic: description

text: Candida albicans

characteristic: organism

text: Candida albicans

text: 97 percent leucin translation at CTG codon sites

characteristic: phenotype

text: Candida albicans

text: fresh sample

characteristic: specimen of known storage state

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: anthropogenic terrestrial biome (ENVO:01000219)

characteristic: environment (biome)

text: digestive tract (UBERON:0001555)

characteristic: environment (feature)

text: feces (UBERON:0001988)

characteristic: environment (material)

text: South Korea

characteristic: geographic location (country and/or sea)

text: gut metagenome

characteristic: pubmed id

text: gut metagenome

text: Cow


text: BGI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut

text: human-associated habitat

text: faeces

text: human-gut

characteristic: environmental package

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: MetaHIT-Richness

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HPA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ST46 (BAPS cluster 1)

characteristic: description

text: Legionella pneumophila

text: Legionella pneumophila

characteristic: title


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: ANAND

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Rumen Content

characteristic: bio material

text: Dr. C. G. Joshi & Co-workers

characteristic: collected by

text: India

characteristic: geographic location (country and/or sea)

text: Buffalo

characteristic: host

text: metagenomes

text: metagenomes

text: Buffalo Rumen metagenomics-Shotgun sequencing


characteristic: ENA-CHECKLIST

text: SRA-Webin

text: EBI-UI

text: public

text: 18S rRNA genes, density gradient fractionation 10 of sample L3, which was labeled by 13C for 5 days

text: root metagenome

characteristic: organism

text: root metagenome

text: switchgrass root microboes


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CCME-COLORADO

text: public

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:body

characteristic: body habitat

text: UBERON:multi-tissue structure

characteristic: body product

text: UBERON:multi-cellular organism

characteristic: body site

characteristic: collection date

text: insect metagenome

characteristic: common name

characteristic: depth

text: H. erato pupa

text: H. erato pupa

characteristic: elevation

characteristic: env biome

text: ENVO:forest

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: GAZ:Panama

text: butterfly

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: pupa

characteristic: life stage

characteristic: longitude

text: insect metagenome

text: n

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: insect metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WUSL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: B. cellulosilyticus WH2 sample from in vitro induction experiment

characteristic: description

text: metagenome

characteristic: investigation type

text: Bacteroides cellulosilyticus

characteristic: organism

characteristic: project name

text: Bacteroides cellulosilyticus

text: Illumina

characteristic: sequencing method

characteristic: strain

text: B. cellulosilyticus phage induction

characteristic: title


characteristic: ENA-CHECKLIST

text: CCME-COLORADO

text: public

characteristic: altitude

characteristic: anonymized name

text: n

characteristic: collection date

text: compost metagenome

characteristic: common name

characteristic: depth

text: compost sample from Hay compost control

text: compost sample from Hay compost control

characteristic: elevation

text: ENVO:cropland

characteristic: env biome

text: ENVO:farm

characteristic: env feature

text: ENVO:compost

characteristic: env matter

text: Recipe

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: compost metagenome

text: y

characteristic: public

characteristic: sample id

characteristic: sample name

text: compost metagenome

text: Intervale Community Farms, Burlington, Vermont

characteristic: site description

characteristic: taxon id

text: compost microbiome

text: H

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: UU-EBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: FGSC 5508

characteristic: culture collection

text: The project involves Illumina paired-end sequencing and assembly of the genome of a species of Neurospora, reproducing by haploid selfing (homothallic): N. sublineolata

characteristic: description

text: Neurospora sublineolata

characteristic: organism

text: Neurospora sublineolata

text: Genome sequencing of the homothallic species Neurospora sublineolata

characteristic: title


text: CCME-COLORADO

text: public

characteristic: altitude

characteristic: anonymized name

text: y

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: metatranscriptome of humanized mice

text: metatranscriptome of humanized mice

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: laboratory mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: n

characteristic: public

text: 0.1, g

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

text: Metatranscriptome of mice humanized with the intact, unclutured or culture collection from twins discordant for obesity


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: IOA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: salmon louse

text: Adult

characteristic: dev stage

text: Lepeophtheirus salmonis

characteristic: organism

text: Lepeophtheirus salmonis

text: Female

characteristic: sex

text: EMB Resistant

characteristic: strain

text: Whole organism

characteristic: tissue type

text: Lepeophtheirus salmonis (barcode D02)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: EMBL

text: public

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: SNU

text: public

text: human gut metagenome

text: human gut metagenome

text: 16S data of Korean twin gut microbiome


Morpheus F8

text: SRA-Webin

text: SCKCEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Morpheus F8

characteristic: collection date

characteristic: depth

text: Deep Subsurface

characteristic: environment (biome)

text: Subterrestrial Marine sediment

characteristic: environment (feature)

text: Clay layer

characteristic: environment (material)

text: sediment

characteristic: environmental package

text: Belgium, Campine Region

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Morpheus 16S

characteristic: project name

text: Vertical Piezometer Morpheus

characteristic: sample collection device or method

text: sediment metagenome

characteristic: sequencing method

text: 16S rDNA Variable region

characteristic: target gene

characteristic: target subfragment

text: Filter 8


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: Preantibiotic

text: n

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: mouse gut metagenome

characteristic: common name

text: Preantibiotic Sample, Treatment 9

characteristic: description

text: Preantibiotic Sample, Treatment 9

characteristic: elevation

text: ENVO:mammalia-associated habitat

characteristic: env biome

text: ENVO:mammalia-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: n

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: taxon id

characteristic: title

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: local populations

characteristic: breed

text: Taza

text: Magharaoua

text: goat

characteristic: common name

text: Goat MOCH-W7-3048 from NextGen project

text: 18 months

characteristic: estimated age

text: Morocco

text: 34.1563 degrees

text: -3.86 degrees

text: Capra hircus

characteristic: sampling date

text: Capra hircus

text: female

characteristic: sex

text: Capra hircus


E-SYBR-2:DC DC5618 + AF293

text: EMBL-EBI

text: public

text: E-SYBR-2:DC DC5618 + AF293

text: ArrayExpress

characteristic: broker name

text: Protocols: Fungal cell preparation: 5 S. cerevisiae strains were grown at 28degC with stirring (150 r.p.m.) until mid-exponential phase in liquid YPD medium (1%, w/v yeast extract, 2%, w/v peptone and 2% w/v glucose). 5 C. albicans and parapsilosis strains were grown at at 28degC with stirring (150 r.p.m.) until mid-exponential phase in liquid Saboraud medium (1%, w/v peptone and 2% w/v glucose). Cells were then harvested by centrifugation, washed twice with sterile water and resuspended in fresh RPMI 1640 complete medium. 4 A. fumigatus strains were grown at 37degC in solid Saboraud medium. Spores were then collected using PBS + 0.1% Tween and then washed twice with sterile water and resuspended in fresh RPMI 1640 complete. Human cell preparation: PBMCs were isolated from buffy coat blood sample from 6 healthy donors from the Transfusion Unit of the Careggi Hospital (Florence, Italy) by Ficoll-Hypaque density gradient centrifugation (Biochrom AG). Monocytes were isolated from low density PBMCs by magnetic enrichment with anti-CD14 beads (Miltenyi Biotec). Cells were cultured in RPMI complete medium (RPMI 1640, 10% w/v FBS, 1% w/v 200 mM glutamine, 1% w/v 50 mM sodium pyruvate, penicillin-streptomicin) in the presence of GM-CSF (800 U/ml) and recombinant IL-4 (1000 U/ml) for 6 days to allow dendritic cell (DC) differentiation (37degC, 5% CO2). Cell treatment: DCs were cultured for 4 hours with the different fungal strains at a stimuli:DC ratio of 5:1 (time= 4hr, 37degC, 5% CO2, complete RPMI medium). As controls, DCs or the single fungal strain were grown alone in the same experimental condition. RNA was extracted from cells using the standard TriZol protocol. For A. fumigatus containing samples, prior to TriZol extraction, fungal cells were disrupted by grinding in liquid nitrogen with pestle and mortar. RNA samples were then quantified, and their integrity checked using NanoChip BioAnalyzer technology (Agilent). For each sample, one paired-end mRNA library with approximately 150bp insert size was prepared using the TruSeq RNA Sample Preparation Kit v2 (Illumina).

characteristic: description

text: DC DC5618

characteristic: individual

text: Homo sapiens + Aspergillus fumigatus

characteristic: organism

text: Aspergillus fumigatus

text: Aspergillus fumigatus

characteristic: strain or line

text: DC DC5618 + AF293

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL European Bioinformatics Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:EMBL European Bioinformatics Institute

text: fresh sample

characteristic: bio source type

text: ArrayExpress

text: clinical sample

characteristic: clinical history

text: Protocols: Genomic DNA was extracted using the CTAB genomic DNA extraction method. Libraries were constructed using Illumina TruSeq DNA Sample Prep standard protocol. Briefly, 5 ug of high molecular weight genomic DNA (gDNA) was fragmented by Covaris sonication device. Following sonication, DNA fragments were end-repaired and A-tailed. Adapters were then ligated via a 3' thymine overhang. Finally, ligated fragments were amplified by PCR (10 cycles). Insert sizes were 400-500 bp as evaluated in an Agilent DNA 1000 Analyzer Chip.

text: resistant to itraconazole

characteristic: itraconazole resistance

text: Aspergillus fumigatus

text: Aspergillus fumigatus

text: azole-resistant

characteristic: overall azole resistance

text: pathogenic

characteristic: pathogenicity

text: sensitive to posaconazole

characteristic: posaconazole resistance

text: Aspergillus fumigatus

characteristic: strain

text: sensitive to voraconazole

characteristic: voraconazole resistance


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: BGI

characteristic: broker name

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MetaHIT-MGS

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from spanish


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: depth

text: terrestrial biome

text: grassland soil

text: agricultural soil

text: soil

text: Netherlands

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

characteristic: organism

text: GMOFUNGI

text: soil metagenome

text: pyrosequencing

text: 18S rRNA

characteristic: target gene

characteristic: title


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: ICL-SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cell line

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: BGI

text: public

text: BGI

characteristic: broker name

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MetaHIT-MGS

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: altitude

characteristic: anonymized name

text: n

characteristic: batch

text: compost metagenome

characteristic: depth

text: compost sample from Windrow

characteristic: description

text: compost sample from Windrow

characteristic: elevation

text: ENVO:cropland

characteristic: env biome

text: ENVO:farm

characteristic: env feature

text: ENVO:compost

characteristic: env matter

text: Process through time

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: compost metagenome

characteristic: organism

text: y

characteristic: public

characteristic: sample id

characteristic: sample name

text: compost metagenome

text: Highfields Center for Composting, Hardwick, Vermont

characteristic: site description

characteristic: taxon id

characteristic: title

text: compost microbiome

text: W

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: lat lon

text: viral metagenome

text: viral metagenome

text: Comparison of PolB and MCP6 to study Prasinovirus diversity


text: SNU

text: public

characteristic: environment (biome)

text: digestive tract (UBERON:0001555)

characteristic: environment (feature)

text: feces (UBERON:0001988)

characteristic: environment (material)

text: South Korea

characteristic: geographic location (country and/or sea)

text: gut metagenome

characteristic: organism

characteristic: pubmed id

text: gut metagenome

text: Pig


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: KNU

text: public

text: outside the fairy ring zone of Tricholoma matsutake

characteristic: description

text: Archaea

text: Archaea

text: Sample 3_Archaea

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human gut

text: human-associated habitat

text: faeces

text: human-gut

characteristic: environmental package

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MetaHIT-Richness

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish


text: SRA-Webin

text: UNIVERISTY OF OXFORD

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERISTY OF OXFORD

characteristic: Submitter Id

text: Norovirus

characteristic: organism

text: Norovirus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WUSL

text: public

characteristic: collection date

text: Low fat high plant polysacharides

characteristic: diet

text: host associated

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: host-associated

text: USA

text: house mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: metagenome

text: mouse gut metagenome

text: mouse gut metagenome

text: Illumina

text: Mouse fecal sample for COPRO-Seq


High

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CBMSO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: High

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: HeLa

characteristic: title


characteristic: ENA-CHECKLIST

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: SNU

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S data of Korean twin gut microbiome


characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: TAULI

text: public

text: human

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host

text: Homo sapiens

text: Homo sapiens

text: men

characteristic: sex

text: severe copd patients


characteristic: ENA-LAST-UPDATE

text: CCME-COLORADO

text: public

characteristic: altitude

characteristic: anonymized name

text: n

text: Mice ceca

text: UBERON:cecum

characteristic: body habitat

text: UBERON:cecum

characteristic: body product

characteristic: depth

text: fecal samples from mice colonized with the unculture collection from MZ twin pair 4

characteristic: description

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: GAZ:United States of America

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: gut metagenome

text: Titanium

characteristic: sequencing technology

characteristic: taxon id

text: Cecal micro biome of mice humanized with the uncultured and cultured microbiota from twins discordant for obesity


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: EBI-UI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 18S rRNA genes, density gradient fractionation 6 of sample L1, which was labeled by 13C for 5 days

text: root metagenome

characteristic: organism

text: root metagenome

text: switchgrass root microboes

characteristic: title


text: SRA-Webin

text: IEB-ED

text: public

text: oak gall wasps

characteristic: common name

text: Cynipini

text: Cynipini

text: Statistical phylogeography from individual, de novo genome assemblies


Eimeria tenella Nippon Nt2

text: SRA-Webin

text: RVC

text: public

text: Eimeria tenella Nippon Nt2

text: Clone Nt2

characteristic: isolate

text: Eimeria tenella

text: Eimeria tenella

text: Nippon

characteristic: strain

text: Eimeria tenella strain genome


text: SRA-Webin

text: EMBL

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: SRA-Webin

text: CNC

text: public

text: uncultured archaeon

text: uncultured archaeon

text: Bottled Water. Six months of storage. Year 2010.


text: SRA-Webin

text: BGI

text: public

text: BGI

characteristic: broker name

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MetaHIT-MGS

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: ICL-SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cell line

text: human

text: Homo sapiens

text: Homo sapiens


text: SRA-Webin

text: BGI

text: public

text: BGI

characteristic: broker name

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Spain

text: metagenome

text: human gut metagenome

characteristic: organism

text: MetaHIT-MGS

text: human gut metagenome

text: Illumina

text: Stool sample from spanish

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: UD

text: public

text: Buccal

characteristic: body site

text: pig

characteristic: common name

text: Cotton swab sample from the buccal region of swine carcass E on day 3.

characteristic: description

text: Deciduous woodland

text: Midwest Temperate Forest

text: Soil

text: host-associated

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Carcass E

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Sus scrofa

text: Swine carrion decomposition

characteristic: project name

text: Cotton swab

characteristic: sample collection device or method

text: Sus scrofa

text: Pyrosequencing

characteristic: sequencing method

text: Swine carrion decomposition, Ohio, USA-2010

text: Access

characteristic: treatment


characteristic: ENA-CHECKLIST

text: SRA-Webin

characteristic: External Id

text: UK ESSEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UK ESSEN

characteristic: Submitter Id

characteristic: anonymized name

characteristic: chromosome 3 status

text: human

text: Homo sapiens

text: Homo sapiens

text: m

characteristic: sex

text: tumor

characteristic: tissue type

text: Generic sample from Homo sapiens


text: TGAC

text: public

text: HPAO trap

characteristic: description

text: Allomerus octoarticulatus

characteristic: organism

text: Allomerus octoarticulatus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: PFIZER

text: public

characteristic: collection date

text: human

characteristic: common name

text: metastatic tumor

text: patient

characteristic: environment (biome)

text: patient

characteristic: environment (feature)

text: patient

characteristic: environment (material)

text: human-associated

characteristic: environmental package

text: South Korea

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: CRC WGS study

characteristic: project name

text: Homo sapiens

text: WGS

characteristic: sequencing method

text: CRC WGS samples


characteristic: ENA-CHECKLIST

characteristic: External Id

text: WUSL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Low fat high plant polysacharides

characteristic: diet

text: host associated

text: gut

text: feces

text: host-associated

text: USA

text: house mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: metagenome

text: mouse gut metagenome

text: mouse gut metagenome

text: Illumina

text: Mouse fecal sample for COPRO-Seq


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: UNIVERISTY OF OXFORD

text: public

text: Norovirus

characteristic: organism

text: Norovirus

characteristic: title


characteristic: ENA-CHECKLIST

text: SRA-Webin

text: UIO

text: public

text: University of Oslo, Programme for Marine Biology

characteristic: culture collection

text: DNA extracted from a haptophyte mock community consisting of 1 million cells from 11 species, amplified with primer pair Hap454

characteristic: description

text: Haptophyceae

text: Haptophyceae

text: Haptophyte mock community


text: SRA-Webin

characteristic: External Id

text: TAULI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host

text: Homo sapiens

text: Homo sapiens

text: men

characteristic: sex

text: severe copd patients


text: SRA-Webin

text: SNU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

text: human gut metagenome

text: 16S data of Korean twin gut microbiome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: CRG

text: public

text: fission yeast

text: Control at 4H

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Spombe transcription factors


characteristic: ENA-CHECKLIST

text: SRA-Webin

text: SNU

text: public

text: gut metagenome

characteristic: organism

text: gut metagenome

text: Gut microbiomes of Korean Twin Pairs

characteristic: title


characteristic: External Id

text: UCI-ECOEVI

text: public

text: 1 week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Protocols: Male and female Heliconius melpomene pupae were sampled from Costa Rica in 2012. We allowed the pupae to eclose as adults and then fed them for 1 week before freezing the tissue at -80 degrees centigrade for total RNA isolation. Total RNAs were extracted separately from antennae, proboscis together with labial palps, and all six legs of three individual males and three individual females of H. melpomene using Trizol (Life Technologies, Grand Island, NY). A NucleoSpin RNA II kit (Macherey-Nagel, Bethlehem, PA) was used to purify total RNAs. Each total RNA sample was purified through 1 NucleoSpin RNA II column. Purified total RNA samples were quantified using a Qubit 2.0 Fluorometer (Life Technologies, Grand Island, NY). The quality of the RNA samples was checked using an Agilent Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA). A TruSeq RNA sample prep kit (Illumina, San Diego, CA) was used to prepare 18 individual cDNA libraries. 0.3-4 ug of purified total RNAs were used to make cDNA libraries. After being normalized according to their concentrations, the enriched individual libraries were pooled and then run on a 2 0x0.0000000000001p-1022garose gel. cDNA products ranging from 280 to 340 bp with an average of 310 bp were cut out and purified using a Geneclean III kit (MP Biomedicals, Solon, OH) to facilitate post-sequencing assembly. After being re-purified using Agencourt AMPure XP magnetic beads (Beckman Coulter Genomics, Danvers, MA), the cDNA pool was quantified using the Qubit 2.0 Fluorometer, and QC checked using the Agilent Bioanalyzer 2100.

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Heliconius melpomene rosina

text: Heliconius melpomene rosina

text: antenna

characteristic: organism part

text: Heliconius melpomene rosina

text: male


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: anonymized name

text: Qazvin

text: Alamout

text: wild goat

characteristic: common name

text: Bezoar IRCA-N8-0006 from NextGen project

text: 108 months

characteristic: estimated age

text: Iran

characteristic: geographic location (country and/or sea)

text: 36.442 degrees

characteristic: latitude

text: 50.586 degrees

characteristic: longitude

text: Capra aegagrus

characteristic: sampling date

text: Capra aegagrus

text: male

characteristic: sex

text: Capra aegagrus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: NIOO-KNAW

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: terrestrial biome

characteristic: environment (biome)

text: grassland soil

characteristic: environment (feature)

text: agricultural soil

characteristic: environment (material)

text: soil

characteristic: environmental package

text: Netherlands

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: GMOFUNGI

characteristic: project name

text: soil metagenome

text: pyrosequencing

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: EBI

text: public

characteristic: Submitter Id

characteristic: anonymized name

text: khoiy

text: khoiy

text: goat

text: Goat IRCH-B3-5031 from NextGen project

characteristic: description

text: 36 months

characteristic: estimated age

text: Iran

characteristic: geographic location (country and/or sea)

text: 38.652371 degrees

characteristic: latitude

text: 44.940909 degrees

characteristic: longitude

text: Capra hircus

characteristic: sampling date

text: Capra hircus

text: female

characteristic: sex

text: Capra hircus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CCME-COLORADO

text: public

characteristic: altitude

text: Preantibiotic

text: n

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: depth

text: Preantibiotic Sample, Treatment 8

text: Preantibiotic Sample, Treatment 8

characteristic: elevation

text: ENVO:mammalia-associated habitat

characteristic: env biome

text: ENVO:mammalia-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: GAZ:United States of America

characteristic: host subject id

text: mouse gut metagenome

characteristic: organism

text: n

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: taxon id

characteristic: title

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: IOA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: salmon louse

characteristic: common name

text: Adult

characteristic: dev stage

text: Lepeophtheirus salmonis

text: Lepeophtheirus salmonis

text: Female

characteristic: sex

text: EMB Resistant

characteristic: strain

text: Whole organism

characteristic: tissue type

text: Lepeophtheirus salmonis (barcode B07)


characteristic: ENA-CHECKLIST

text: SRA-Webin

text: KIS

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: JKE

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CCME-COLORADO

text: public

characteristic: altitude

text: PBE

text: n

text: UBERON:body

characteristic: body habitat

text: UBERON:multi-tissue structure

characteristic: body product

text: UBERON:multi-cellular organism

characteristic: body site

characteristic: collection date

text: insect metagenome

characteristic: depth

text: H. erato eggs

characteristic: description

text: H. erato eggs

characteristic: elevation

text: ENVO:Tropical and subtropical moist broadleaf forest biome

characteristic: env biome

text: ENVO:forest

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: GAZ:Panama

characteristic: geographic location (country and/or sea)

text: butterfly

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: egg

characteristic: life stage

characteristic: longitude

text: insect metagenome

text: n

characteristic: public

text: 0.1, gram

characteristic: sample id

text: PBE

characteristic: sample name

text: insect metagenome

characteristic: taxon id

text: PBE

text: Bacterial community dynamics in Heliconius erato


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: UMCU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Sample from peritoneal metastasis right pelvic region patient 3

characteristic: title


text: BGI

text: public

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MetaHIT-Richness

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: DUKE-NUS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: anonymized name

text: upper urinary track urothelial cell

characteristic: cell type

text: human

text: tumour sample for donor 80

characteristic: description

text: Taiwan

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens


text: SRA-Webin

text: UMU

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: clear cell renal cell carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

characteristic: tissue type

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EBI

text: public

text: local populations

characteristic: breed

text: TATA

text: FOUM LAHSEN

text: goat

text: Goat MOCH-M18-1285 from NextGen project

text: 36 months

characteristic: estimated age

text: Morocco

text: 28.55545 degrees

characteristic: latitude

text: -8.5531 degrees

characteristic: longitude

text: Capra hircus

characteristic: sampling date

text: Capra hircus

text: female

characteristic: sex

text: Capra hircus


characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:body

characteristic: body habitat

text: UBERON:multi-tissue structure

characteristic: body product

text: UBERON:multi-cellular organism

characteristic: body site

characteristic: collection date

text: insect metagenome

characteristic: depth

text: H. erato pupa

characteristic: description

text: H. erato pupa

characteristic: elevation

characteristic: env biome

text: ENVO:forest

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: GAZ:Panama

text: butterfly

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: pupa

characteristic: life stage

text: insect metagenome

text: n

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: insect metagenome

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: BGI

characteristic: broker name

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: MetaHIT-MGS

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from spanish

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: CNC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: uncultured bacterium

text: Bottled water. Fifteen days of storage. Year 2009.


text: SRA-Webin

text: UNIVERISTY OF OXFORD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Norovirus

text: Norovirus


characteristic: ENA-CHECKLIST

text: SRA-Webin

text: SNU

text: public

text: human gut metagenome

text: human gut metagenome

text: 16S data of Korean twin gut microbiome


text: WUSL

text: public

characteristic: collection date

text: Low fat high plant polysacharides

characteristic: diet

text: host associated

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: house mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: metagenome

text: mouse gut metagenome

text: mouse gut metagenome

text: Illumina

text: Mouse fecal sample for COPRO-Seq


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: SDSU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Vibrio cholerae O1 str. VC307

characteristic: organism

text: Vibrio cholerae O1 str. VC307

text: Complete genome sequencing reads of Vibrio cholerae O1 str. VC307

characteristic: title


characteristic: ENA-CHECKLIST

text: SRA-Webin

text: EBI-UI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 18S rRNA genes, density gradient fractionation 5 of sample L5, which was labeled by 13C for 8 days

characteristic: description

text: root metagenome

text: root metagenome

text: switchgrass root microboes


text: SRA-Webin

text: LMB

text: public

text: Dictyostelium discoideum

text: Dictyostelium discoideum

characteristic: strain

text: Mutant strain HM558


text: EBI

text: public

characteristic: anonymized name

text: local populations

characteristic: breed

text: Ouarzazat

text: Ousalsat

text: goat

characteristic: common name

text: Goat MOCH-P15-1186 from NextGen project

text: 12 months

characteristic: estimated age

text: Morocco

characteristic: geographic location (country and/or sea)

text: 30.30812 degrees

characteristic: latitude

text: -7.15083 degrees

characteristic: longitude

text: Capra hircus

characteristic: sampling date

text: Capra hircus

text: male

characteristic: sex

text: Capra hircus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

characteristic: title


characteristic: ENA-CHECKLIST

text: CCME-COLORADO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

characteristic: batch

characteristic: collection date

text: compost metagenome

characteristic: depth

text: compost sample from Aerated Static Pile

characteristic: description

text: compost sample from Aerated Static Pile

characteristic: elevation

text: ENVO:cropland

characteristic: env biome

text: ENVO:farm

characteristic: env feature

text: ENVO:compost

characteristic: env matter

text: Process,Process through time

text: GAZ:United States of America

text: compost metagenome

text: y

characteristic: public

characteristic: sample id

characteristic: sample name

text: compost metagenome

text: Highfields Center for Composting, Hardwick, Vermont

characteristic: site description

characteristic: taxon id

text: compost microbiome

text: ASP

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: UK ESSEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: f

characteristic: sex

text: blood

characteristic: tissue type

text: Generic sample from Homo sapiens

characteristic: title