characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 238 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GTTAGCCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph238.

text: Danio rerio

text: mixed

characteristic: title


status: PUBLIC

text: Segmentation:14-19 somites - ZFS:0000026

tag: attribute

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 238 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GTCGCTAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph238.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 238 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph238.

text: Danio rerio

text: mixed

characteristic: title


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 238 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GAGCCAAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph238.

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 238 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GCTCCTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph238.

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 238 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GTAAGGTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph238.

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 238 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GAGGATGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph238.

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 238 clutch 2 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GTTGTCGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph238.

characteristic: sample description

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 238 clutch 2 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GGATTAGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph238.

text: Danio rerio

text: mixed

characteristic: strain


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGTCTATC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: title


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TATGTGGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTACTCGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCGTTAGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TACCGAGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGTTCTCC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

characteristic: sample description

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTCGCACC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: strain


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTGCGTAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: title


text: Segmentation:14-19 somites - ZFS:0000026

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCTACGAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGACAGAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TAGAACAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCATCCTA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGCTGATA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

characteristic: sample description

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TAGACGGA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: strain


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGTGAAGA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: title


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCTCTTCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTGTTCCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGAAGCCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TACCACCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGCGTGAA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

characteristic: sample description

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GGTGAGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: strain


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GATCTCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: title


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GTGTCCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for sox10, allele t3 and wild type for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GACGGATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Segmentation:14-19 somites - ZFS:0000026

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GGTCGTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GAATCTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

characteristic: sample description

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GTACATCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: strain


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GAGGTGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: title


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GCATGGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GTTAGCCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GTCGCTAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GAGCCAAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

characteristic: sample description

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GCTCCTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for sox10, allele t3 and heterozygous for allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GTAAGGTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: title


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GAGGATGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GTTGTCGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GGATTAGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GATAGAGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Segmentation:14-19 somites - ZFS:0000026

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GTGTGTCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

characteristic: sample description

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GCAATCCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: strain


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GACCTTAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed

characteristic: title


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GCCTGTTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GCACTGTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GCTAACTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GATTCATC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for both sox10, allele t3 and allele baz1 from ZMP phenotype 152 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GTCTTGGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph152

characteristic: sample description

text: Danio rerio

text: mixed


Lymnaea stagnalis

text: BANG

text: public

text: Lymnaea stagnalis

text: great pond snail

text: Lymnaea stagnalis

text: Lymnaea stagnalis

text: Lymnaea stagnalis


text: 454 LIFE SCIENCES/RO

text: public

tag: Namespace:454 LIFE SCIENCES/RO

text: HIV-1 M:B

text: HIV-1 M:B

text: 2nd HIV UDS aphastudy


text: public

tag: Namespace:IMPERIAL CENTRE FOR TRANSLATIONAL AND EXPERIMENTAL MEDICINE

text: human

text: Homo sapiens

text: Homo sapiens

text: MCF7_LOWATAC_TAAGGCG_L007_R1_001.fastq.gz


text: IMPERIAL CENTRE FOR TRANSLATIONAL AND EXPERIMENTAL MEDICINE

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: MCF7_LOW_ATAC_TAAGGCG_L001_R1_001.fastq.gz


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: MCF7_LOW_ATAC_TAAGGCG_L002_R1_001.fastq.gz


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: MCF7_HIGHATAC_CGTACTA_L007_R1_001.fastq.gz


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: MCF7_HIGH_ATAC_CGTACTA_L001_R1_001.fastq.gz


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: MCF7_HIGH_ATAC_CGTACTA_L002_R1_001.fastq.gz


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: LTED_LOW_ATAC_TCCTGAG_L001_R1_001.fastq.gz


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: LTED_LOW_ATAC_TCCTGAG_L002_R1_001.fastq.gz


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: LTED_HIGHATAC_CGAGGCT_L007_R1_001.fastq.gz


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: LTED_HIGH_ATAC_CGAGGCT_L001_R1_001.fastq.gz


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: LTED_HIGH_ATAC_CGAGGCT_L002_R1_001.fastq.gz


text: UNIVERSITY OF BASEL

text: public

tag: Namespace:UNIVERSITY OF BASEL

text: Mycobacterium tuberculosis clinical isolate

characteristic: description

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: M. tuberculosis


E-MTAB-4147:Se1691 mucoid1

text: Animal Health Trust

text: public

text: E-MTAB-4147:Se1691 mucoid1

tag: Namespace:Animal Health Trust

text: ArrayExpress

characteristic: broker name

text: Protocols: The strain of interest was grown on selective agar. Total RNA was extracted from bacterial colonies of each phenotype. rRNA was depleted from the total RNA. Libraries were prepared using a kit that incorporated cDNA synthesis and library fragmentation. Libraries were quantified by qPCR prior to sequencing.

text: Streptococcus equi

text: Streptococcus equi

text: Mucoid

characteristic: phenotype

text: Streptococcus equi

characteristic: strain

text: Se1691 mucoid1

characteristic: title

type: has member


E-MTAB-4147:Se1691 mucoid2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Animal Health Trust

text: public

characteristic: SRA accession

text: E-MTAB-4147:Se1691 mucoid2

text: ArrayExpress

text: Streptococcus equi

text: Streptococcus equi

text: Mucoid

text: Streptococcus equi

text: Se1691 mucoid2


E-MTAB-4147:Se1691 mucoid3

characteristic: External Id

text: Animal Health Trust

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4147:Se1691 mucoid3

characteristic: Submitter Id

text: ArrayExpress

text: Streptococcus equi

text: Streptococcus equi

text: Mucoid

text: Streptococcus equi

text: Se1691 mucoid3


E-MTAB-4147:Se1691 reduced capsule1

text: Animal Health Trust

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4147:Se1691 reduced capsule1

text: ArrayExpress

text: Streptococcus equi

characteristic: organism

text: Streptococcus equi

text: Reduced capsule

text: Streptococcus equi

text: Se1691 reduced capsule1


E-MTAB-4147:Se1691 reduced capsule2

text: Animal Health Trust

text: public

text: E-MTAB-4147:Se1691 reduced capsule2

text: ArrayExpress

text: Streptococcus equi

text: Streptococcus equi

text: Reduced capsule

text: Streptococcus equi

text: Se1691 reduced capsule2


E-MTAB-4147:Se1691 reduced capsule3

text: Animal Health Trust

text: public

text: E-MTAB-4147:Se1691 reduced capsule3

text: ArrayExpress

text: Streptococcus equi

text: Streptococcus equi

text: Reduced capsule

text: Streptococcus equi

text: Se1691 reduced capsule3


text: UNIVERSITY OF KIEL

text: public

tag: Namespace:UNIVERSITY OF KIEL

text: brown bear

characteristic: common name

text: Ursus arctos

text: Ursus arctos


text: UNIVERSITY OF KIEL

text: public

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus


text: public

tag: Namespace:IRD (Institute of Research for Development)

text: ArrayExpress

characteristic: broker name

text: Protocols: Bacteria were grown in VSG medium (Vincent-Succinate-Glutamate, Vincent, 1970) supplemented with root exudates of Mimosa pudica (induced condition) or not (control condition) Total RNA were extracted at mid log pahse of growth (4,5 for BP and CT, 6h for RM) using the RiboPure kit (Ambion), and rRNA were subtracted by two steps of MicrobeExpress kit (Ambion) extracted following Libraries were built by GATC company using the Trueseq Illumina kit

text: Control culture 1 in VSG

characteristic: growth condition

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815


text: IRD (Institute of Research for Development)

text: public

text: ArrayExpress

text: Control culture 2 in VSG

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815


text: public

text: ArrayExpress

text: Control culture 3 in VSG

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815


text: public

text: ArrayExpress

text: Induced Culture 1 by Root Exudates

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815


text: public

text: ArrayExpress

text: Induced Culture 2 by Root Exudates

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815


text: public

text: ArrayExpress

text: Induced Culture 3 by Root Exudates

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815

text: Burkholderia phymatum STM815


text: public

text: ArrayExpress

text: Control culture 1 in VSG

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424


text: public

text: ArrayExpress

text: Control culture 2 in VSG

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424


text: public

text: ArrayExpress

text: Control culture 3 in VSG

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424


text: public

text: ArrayExpress

text: Induced Culture 1 by Root Exudates

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424


text: public

text: ArrayExpress

text: Induced Culture 2 by Root Exudates

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424


text: public

text: ArrayExpress

text: Induced Culture 3 by Root Exudates

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424

text: Cupriavidus taiwanensis LMG 19424


text: public

text: ArrayExpress

text: Control culture 1 in VSG

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625


text: public

text: ArrayExpress

text: Control culture 2 in VSG

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625


text: public

text: ArrayExpress

text: Control culture 3 in VSG

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625


text: public

text: ArrayExpress

text: Induced Culture 1 by Root Exudates

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625


text: public

text: ArrayExpress

text: Induced Culture 2 by Root Exudates

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625


text: public

text: ArrayExpress

text: Induced Culture 3 by Root Exudates

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625

text: Rhizobium mesoamericanum STM3625


E-MTAB-4151:Sample 10_part 1

text: public

text: E-MTAB-4151:Sample 10_part 1

tag: Namespace:Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University Dusseldorf

text: ArrayExpress

text: thale cress

text: Protocols: In each SAR experiment, at least 6 upper (2) leaves from 6 different plants pre-treated in 1 leaves with Psm (MgCl2) were pooled for one biological Psm- (mock-control) replicate. In this way, 3 biologically independent, replicate samples per treatment and plant genotype were obtained within each SAR set. Arabidopsis thaliana plants were grown individually in pots containing a mixture of soil, vermiculite and sand (8:1:1) in a controlled cultivation chamber with a 10-h day (9 AM to 7 PM; photon flux density 100 mol m-2 s-1) / 14-h night cycle and a relative humidity of 70 %. Day and night temperatures were set to 21C and 18C, respectively. Experiments were performed with 5- to 6-week-old, naive plants exhibiting a uniform appearance. To activate SAR, plants were infiltrated between 10 AM and 12 AM into three lower (1) leaves with suspensions of the bacterial pathogen Pseudomonas syringae pv. maculicola (OD600 = 0.005). Infiltration with 10 mM MgCl2 served as the mock-control treatment. Upper (2) leaves were harvested 48 h after the primary treatment for the determination of systemic gene expression by RNA-seq analyses. Three biologically independent, replicate SAR induction experiments were performed with Col-0 and sid2 plants. RNA was extracted from leaf sample replicates with the Plant RNeasy extraction kit (Qiagen, Germany), and treated on-column (Qiagen, Germany) and in solution with RNA-free DNAse (New England Biolabs, MA, USA). RNA integrity, sequencing library quality and fragment size were checked on a 2100 Bioanalyzer (Agilent, CA, USA). Libraries were prepared using the TruSeq RNA Sample Prep Kit v2 (Illumina, San Diego, CA) and library quantification was performed with a Qubit 2.0 (Invitrogen, Germany). Leaf samples were multiplexed 12 libraries per lane yielding approximately 150 million reads per lane.

characteristic: experimental set

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

characteristic: replicate

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

characteristic: stimulus

text: Sample 10_part 1


E-MTAB-4151:Sample 10_part 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University Dusseldorf

text: public

text: E-MTAB-4151:Sample 10_part 2

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 10_part 2

characteristic: title


E-MTAB-4151:Sample 10_part 3

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-4151:Sample 10_part 3

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 10_part 3


E-MTAB-4151:Sample 11_part 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4151:Sample 11_part 1

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 11_part 1


E-MTAB-4151:Sample 11_part 2

text: public

text: E-MTAB-4151:Sample 11_part 2

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 11_part 2


E-MTAB-4151:Sample 11_part 3

text: public

text: E-MTAB-4151:Sample 11_part 3

text: ArrayExpress

text: thale cress

characteristic: experimental set

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

characteristic: replicate

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 11_part 3


E-MTAB-4151:Sample 12_part 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4151:Sample 12_part 1

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

characteristic: stimulus

text: Sample 12_part 1


E-MTAB-4151:Sample 12_part 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4151:Sample 12_part 2

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 12_part 2

characteristic: title


E-MTAB-4151:Sample 12_part 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-4151:Sample 12_part 3

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 12_part 3


E-MTAB-4151:Sample 13

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4151:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: Protocols: In each SAR experiment, at least 6 upper (2) leaves from 6 different plants pre-treated in 1 leaves with Psm (MgCl2) were pooled for one biological Psm- (mock-control) replicate. In this way, 3 biologically independent, replicate samples per treatment and plant genotype were obtained within each SAR set. Arabidopsis thaliana plants were grown individually in pots containing a mixture of soil, vermiculite and sand (8:1:1) in a controlled cultivation chamber with a 10-h day (9 AM to 7 PM; photon flux density 100 mol m-2 s-1) / 14-h night cycle and a relative humidity of 70 %. Day and night temperatures were set to 21C and 18C, respectively. Experiments were performed with 5- to 6-week-old, naive plants exhibiting a uniform appearance. To activate SAR, plants were infiltrated between 10 AM and 12 AM into three lower (1) leaves with suspensions of the bacterial pathogen Pseudomonas syringae pv. maculicola (OD600 = 0.005). Infiltration with 10 mM MgCl2 served as the mock-control treatment. Upper (2) leaves were harvested 48 h after the primary treatment for the determination of systemic gene expression by RNA-seq analyses. Three biologically independent SAR induction experiments were performed with Col-0 and ald1 plants. RNA was extracted from leaf sample replicates with the Plant RNeasy extraction kit (Qiagen, Germany), and treated on-column (Qiagen, Germany) and in solution with RNA-free DNAse (New England Biolabs, MA, USA). RNA integrity, sequencing library quality and fragment size were checked on a 2100 Bioanalyzer (Agilent, CA, USA). Libraries were prepared using the TruSeq RNA Sample Prep Kit v2 (Illumina, San Diego, CA) and library quantification was performed with a Qubit 2.0 (Invitrogen, Germany). Leaf samples were multiplexed 12 libraries per lane yielding approximately 150 million reads per lane.

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Mock

text: Sample 13


E-MTAB-4151:Sample 14

text: public

text: E-MTAB-4151:Sample 14

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Mock

text: Sample 14


E-MTAB-4151:Sample 15

text: public

text: E-MTAB-4151:Sample 15

text: ArrayExpress

text: thale cress

characteristic: description

characteristic: experimental set

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Mock

text: Sample 15


E-MTAB-4151:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4151:Sample 16

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

characteristic: replicate

text: Arabidopsis thaliana

text: Mock

text: Sample 16


E-MTAB-4151:Sample 17

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4151:Sample 17

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Mock

characteristic: stimulus

text: Sample 17


E-MTAB-4151:Sample 18

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4151:Sample 18

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Mock

text: Sample 18

characteristic: title


E-MTAB-4151:Sample 19

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4151:Sample 19

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 19


E-MTAB-4151:Sample 1_part 1

text: public

text: E-MTAB-4151:Sample 1_part 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Mock

text: Sample 1_part 1


E-MTAB-4151:Sample 1_part 2

text: public

text: E-MTAB-4151:Sample 1_part 2

text: ArrayExpress

text: thale cress

characteristic: description

characteristic: experimental set

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Mock

text: Sample 1_part 2


E-MTAB-4151:Sample 1_part 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4151:Sample 1_part 3

text: ArrayExpress

text: thale cress

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Mock

text: Sample 1_part 3


E-MTAB-4151:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4151:Sample 20

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

characteristic: replicate

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 20


E-MTAB-4151:Sample 21

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4151:Sample 21

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

characteristic: stimulus

text: Sample 21


E-MTAB-4151:Sample 22

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4151:Sample 22

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 22

characteristic: title


E-MTAB-4151:Sample 23

text: public

characteristic: SRA accession

text: E-MTAB-4151:Sample 23

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 23


E-MTAB-4151:Sample 24

text: public

text: E-MTAB-4151:Sample 24

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

characteristic: experimental set

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 24


E-MTAB-4151:Sample 2_part 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4151:Sample 2_part 1

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Mock

text: Sample 2_part 1


E-MTAB-4151:Sample 2_part 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4151:Sample 2_part 2

text: ArrayExpress

text: thale cress

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Mock

text: Sample 2_part 2


E-MTAB-4151:Sample 2_part 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4151:Sample 2_part 3

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

characteristic: replicate

text: Arabidopsis thaliana

text: Mock

text: Sample 2_part 3


E-MTAB-4151:Sample 3_part 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4151:Sample 3_part 1

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Mock

characteristic: stimulus

text: Sample 3_part 1


E-MTAB-4151:Sample 3_part 2

text: public

characteristic: SRA accession

text: E-MTAB-4151:Sample 3_part 2

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Mock

text: Sample 3_part 2

characteristic: title


E-MTAB-4151:Sample 3_part 3

text: public

text: E-MTAB-4151:Sample 3_part 3

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Mock

text: Sample 3_part 3


E-MTAB-4151:Sample 4_part 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4151:Sample 4_part 1

text: ArrayExpress

text: thale cress

characteristic: experimental set

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Mock

text: Sample 4_part 1


E-MTAB-4151:Sample 4_part 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4151:Sample 4_part 2

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Mock

text: Sample 4_part 2


E-MTAB-4151:Sample 4_part 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4151:Sample 4_part 3

text: ArrayExpress

text: thale cress

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Mock

text: Sample 4_part 3


E-MTAB-4151:Sample 5_part 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4151:Sample 5_part 1

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

characteristic: replicate

text: Arabidopsis thaliana

text: Mock

text: Sample 5_part 1


E-MTAB-4151:Sample 5_part 2

text: public

characteristic: SRA accession

text: E-MTAB-4151:Sample 5_part 2

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Mock

characteristic: stimulus

text: Sample 5_part 2


E-MTAB-4151:Sample 5_part 3

text: public

text: E-MTAB-4151:Sample 5_part 3

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Mock

text: Sample 5_part 3

characteristic: title


E-MTAB-4151:Sample 6_part 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4151:Sample 6_part 1

text: ArrayExpress

text: thale cress

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Mock

text: Sample 6_part 1


E-MTAB-4151:Sample 6_part 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4151:Sample 6_part 2

text: ArrayExpress

text: thale cress

characteristic: experimental set

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Mock

text: Sample 6_part 2


E-MTAB-4151:Sample 6_part 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4151:Sample 6_part 3

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Mock

text: Sample 6_part 3


E-MTAB-4151:Sample 7_part 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4151:Sample 7_part 1

text: ArrayExpress

text: thale cress

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 7_part 1


E-MTAB-4151:Sample 7_part 2

text: public

characteristic: SRA accession

text: E-MTAB-4151:Sample 7_part 2

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

characteristic: replicate

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 7_part 2


E-MTAB-4151:Sample 7_part 3

text: public

text: E-MTAB-4151:Sample 7_part 3

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: A

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

characteristic: stimulus

text: Sample 7_part 3


E-MTAB-4151:Sample 8_part 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4151:Sample 8_part 1

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 8_part 1

characteristic: title


E-MTAB-4151:Sample 8_part 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4151:Sample 8_part 2

text: ArrayExpress

text: thale cress

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 8_part 2


E-MTAB-4151:Sample 8_part 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4151:Sample 8_part 3

text: ArrayExpress

text: thale cress

characteristic: experimental set

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: B

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 8_part 3


E-MTAB-4151:Sample 9_part 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4151:Sample 9_part 1

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 9_part 1


E-MTAB-4151:Sample 9_part 2

text: public

characteristic: SRA accession

text: E-MTAB-4151:Sample 9_part 2

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 9_part 2


E-MTAB-4151:Sample 9_part 3

text: public

text: E-MTAB-4151:Sample 9_part 3

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: C

characteristic: replicate

text: Arabidopsis thaliana

text: Pseudomonas syringae pv. maculicola

text: Sample 9_part 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Institute of Biotechnology, Univerity of Helsinki

text: Propionibacterium freudenreichii is an important starter culture used in the manufacture of Swiss-type cheeses. The complete genome sequence of a Propionibacterium freudenreichii ssp. shermanii strain JS was generated at the Institute of Biotechnology, University of Helsinki, by using a combination of 454 pyrosequencing with GS FLX and GS FLX Titanium series reagents (Roche) and SOLiD 4 (Life Technologies), ABI 3130xl Genetic Analyzer (Life Technologies), and PacBio RS II (Pacific Biosciences) instruments. Initial genome annotation was carried out using RAST, and additional functional annotation information for each CDS was obtained from BLANNOTATOR, CDD, and KAAS.

text: Propionibacterium freudenreichii subsp. shermanii

text: Propionibacterium freudenreichii ssp. shermanii JS genome annotation project


characteristic: ENA-LAST-UPDATE

text: UMR CNRS 6290

text: public

tag: Namespace:UMR CNRS 6290

text: HeLa

characteristic: cell line

text: Olivier Le Tonqueze

characteristic: collected by

text: human

text: CLIPSeq libA pool

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: UMR CNRS 6290

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: HeLa

text: Olivier Le Tonqueze

text: human

text: CLIPSeq libB pool

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: female


text: UMR CNRS 6290

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HeLa

text: Olivier Le Tonqueze

text: human

text: RNAseq libC from HeLa

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: female


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (ATCACGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (CGATGTTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed

characteristic: title


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTAGGCAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGACCACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (ACAGTGGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GCCAATGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (CAGATCTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (ACTTGATG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GATCAGCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed

characteristic: title


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TAGCTTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (GGCTACAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (CTTGTACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGGTTGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

characteristic: sample description

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCTCGGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TAAGCGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCCGTCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed

characteristic: title


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGTACCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo heterozygous for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTCTGTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCTGCTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTGGAGGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

characteristic: sample description

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCGAGCGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGATACGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGCATAGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed

characteristic: title


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo wild type for yap1, allele sa25458 from ZMP phenotype 234 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTGACTCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph234

text: Danio rerio

text: mixed


text: Segmentation:14-19 somites - ZFS:0000026

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGCGATCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTCCTGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TAGTGACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

characteristic: sample description

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TACAGGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

text: Danio rerio

text: mixed

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCCTCAAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TGTGGTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

text: Danio rerio

text: mixed

characteristic: title


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TAGTCTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTCCATTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TCGAAGTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TAACGCTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

characteristic: sample description

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped zebrafish embryo homozygous for yap1, allele sa25458 from ZMP phenotype 235 clutch 1, plus ERCC spike mix 2. A 8 base indexing sequence (TTGGTATG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph235

text: Danio rerio

text: mixed

characteristic: strain