characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Obese.K02.LoSFHiFV.3dpc.B8

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LoSFHiFV

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1522:tp2.Lean.K02.HiSFLoFV.8dpc.A1.1

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: Mice_colonized_with_samples_from_discordant_twins_for_obeseity_and_fed_one_of_two_NHANES_based_diets

text: HiSFLoFV

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id

text: Cultured gut bacterial consortia from twins discordant for obesity modulate adiposity in gnotobiotic mice

type: has member


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp4.Lean.DTFD.E02.Cec1.PM85

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:cecum

characteristic: body habitat

text: UBERON:cecum mucosa

characteristic: body product

text: UBERON:cecum mucosa

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: DTFD Monozygotic Discordant Twins

characteristic: description

text: DTFD Monozygotic Discordant Twins

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

text: GAZ:United States of America

text: mouse

text: mouse gut metagenome

characteristic: organism

text: n

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Denmark

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MetaHIT-Richness

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish


text: UWS

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

unit: m

characteristic: depth

text: Mesocosm with annual plant community

text: Pots with sterilized soil before experiment

text: soil

text: soil

text: Spain

characteristic: geographic location (elevation)

text: mimarks-survey

text: soil metagenome

characteristic: organism

text: retama

text: soil metagenome

text: pyrosequencing

text: plant community growing on sterilized soil

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sub-adult

characteristic: age group

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin of back

characteristic: body site

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

characteristic: common name

text: Pseudacris regilla_from_site_Rattlesunknownke

characteristic: description

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Pacific treefrog

characteristic: host common name

text: Pseudacris regilla

characteristic: host species

characteristic: host subject id

characteristic: host taxid

text: Psre

characteristic: latitude

characteristic: longitude

text: organismal metagenomes

characteristic: park

characteristic: ph

text: n

characteristic: public

characteristic: redox potential

text: NR

text: swab

characteristic: sample id

characteristic: sample name

text: Rattlesunknownke

characteristic: sample site

text: CA

characteristic: sample state

text: organismal metagenomes

characteristic: spcond

text: mS/cm

characteristic: taxon id

characteristic: temp

text: The amphibian skin microbiome across species, space and life history stages

text: dipnet

characteristic: trap type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

characteristic: collection date

text: compost metagenome

characteristic: common name

characteristic: depth

text: compost sample from Hay compost control

characteristic: description

text: compost sample from Hay compost control

characteristic: elevation

text: ENVO:cropland

characteristic: env biome

text: ENVO:farm

characteristic: env feature

text: ENVO:compost

characteristic: env matter

text: Recipe

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: compost metagenome

characteristic: organism

text: y

text: compost metagenome

text: Intervale Community Farms, Burlington, Vermont

characteristic: site description

text: compost microbiome

characteristic: title

text: H

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: human gut metagenome

text: CultureInitiativeExperiment.ArrayedInvasion

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

characteristic: genotype

text: GAZ:United States of America

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiime_study_1523:tp2.Obese.DTFD.E02.10dpc.PM80

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: Mice_colonized_with_samples_from_discordant_twins_forobeseity

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

text: mouse gut metagenome

characteristic: organism

text: n

text: mouse gut metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: qiime_study_1522:tp1.CI.E03.2dpc.3Ln37.8

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: human gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

characteristic: genotype

text: GAZ:United States of America

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiime_study_1523:tp4.Lean.DTFD.E02.Cecum2.PM75

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:cecum

text: UBERON:cecum mucosa

text: UBERON:cecum mucosa

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: ALG samples for mice colonized with the Microbiota of co-twins discordant for obesity

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: wild-type

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

text: mouse gut metagenome

characteristic: organism

text: n

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WUSL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Low fat high plant polysacharides

characteristic: diet

text: host associated

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: house mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: Mouse fecal sample for COPRO-Seq


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: qiime_study_1522:tp1.CI.E03.6dpc.2Ln54.9

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Obese.K02.HiSFLoFV.6dpc.B18

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: HiSFLoFV

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: human gut metagenome

text: n

text: human gut metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Sub-adult

characteristic: age group

text: n

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of back

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

text: Pseudacris regilla_from_site_Eagle lake

characteristic: description

text: Pseudacris regilla_from_site_Eagle lake

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Pacific treefrog

text: Pseudacris regilla

characteristic: host species

text: Psre

characteristic: latitude

characteristic: longitude

text: organismal metagenomes

characteristic: organism

characteristic: park

characteristic: ph

text: n

characteristic: public

characteristic: redox potential

text: NR

text: swab

characteristic: sample id

characteristic: sample name

text: Eagle lake

characteristic: sample site

text: CA

characteristic: sample state

text: organismal metagenomes

characteristic: spcond

text: mS/cm

characteristic: taxon id

characteristic: temp

characteristic: title

text: dipnet

characteristic: trap type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp1.Lean.DTFD.E03.17dpc.PM98

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: mouse gut metagenome

text: n

text: mouse gut metagenome

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1452:fut2positive.day56.56.PSdef

characteristic: Submitter Id

characteristic: altitude

text: n

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: PSdef

characteristic: chow

text: All samples collected between Sept. 2010 and Dec. 2011

text: mouse gut metagenome

text: WT mouse fecal sample

text: WT mouse fecal sample

text: Regular chow/PS def

text: ENVO:mammalia-associated habitat

text: ENVO:mammalia-associated habitat

text: ENVO:feces

text: WT

text: GAZ:United States of America

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: n

characteristic: public

text: .1, g

characteristic: sample id

characteristic: sample name

characteristic: sampling day

text: mouse gut metagenome

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Adult

characteristic: age group

characteristic: anonymized name

text: n

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of back

characteristic: collection date

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

characteristic: common name

characteristic: depth

text: Rana cascadae_from_site_26186

characteristic: description

text: Rana cascadae_from_site_26186

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Cascades Frog

characteristic: host common name

text: Rana cascadae

characteristic: host species

characteristic: host subject id

characteristic: host taxid

text: Raca

text: organismal metagenomes

text: Trinity

characteristic: park

text: Declining

characteristic: ph

text: n

characteristic: redox potential

text: R

text: swab

characteristic: sample site

text: CA

characteristic: sample state

text: organismal metagenomes

characteristic: spcond

text: mS/cm

characteristic: temp

text: dipnet

characteristic: trap type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp1.Obese.DTFD.E01.Cecum2.C.PM52

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:cecum

characteristic: body habitat

text: UBERON:cecum mucosa

characteristic: body product

text: UBERON:cecum mucosa

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: alg SAMPLES FOR TWIN 16_17. cecum1.C sequenced with time course

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

characteristic: genotype

text: GAZ:United States of America

text: mouse

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: sex

characteristic: taxon id

text: Cultured gut bacterial consortia from twins discordant for obesity modulate adiposity in gnotobiotic mice

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: CNB/CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CAACGCGAAGAACCTTACC,CGACAGCCATGCANCACCT

characteristic: adapters

characteristic: collection date

text: Treatment with aclonifen and isoxaflutole in pre-emergence and mesotrione in post-emergence, second sampling time

text: agricultural rhizosphere

characteristic: environment (biome)

text: agricultural soil

characteristic: environment (feature)

text: rhizosphere

characteristic: environment (material)

text: soil

characteristic: environmental package

text: Spain

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CATAGTAGTG

characteristic: multiplex identifiers

text: Zea mays

characteristic: pooling of DNA extracts (ifdone)

text: Herbicide effects on maize rhizobacteria

characteristic: project name

text: Zea mays

text: pyrosequencing

characteristic: sequencing method

text: V6 on 16S rRNA

characteristic: target subfragment

text: AIM T2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sub-adult

characteristic: age group

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin of back

characteristic: body site

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

characteristic: common name

characteristic: depth

text: Pseudacris regilla_from_site_Krammer

characteristic: description

text: Pseudacris regilla_from_site_Krammer

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Pacific treefrog

characteristic: host common name

text: Pseudacris regilla

characteristic: host species

characteristic: host subject id

characteristic: host taxid

text: Psre

characteristic: latitude

characteristic: longitude

text: organismal metagenomes

characteristic: organism

characteristic: park

characteristic: ph

text: n

characteristic: public

characteristic: redox potential

text: NR

text: swab

characteristic: sample id

characteristic: sample name

text: Krammer

characteristic: sample site

text: CA

characteristic: sample state

text: organismal metagenomes

characteristic: spcond

text: mS/cm

characteristic: taxon id

characteristic: temp

characteristic: title

text: The amphibian skin microbiome across species, space and life history stages

text: dipnet

characteristic: trap type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.GermFree.Cohoused.CI.E02.5dpc.F12

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: CultureInitiativeExperiment.BattleRoyale

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: human gut metagenome

text: n

text: human gut metagenome

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp4.Obese.DTFD.E02.Stomach.PM79

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:stomach

characteristic: body habitat

text: UBERON:mucosa of stomach

characteristic: body product

text: UBERON:mucosa of stomach

text: mouse gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: donor

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

text: GAZ:United States of America

text: mouse

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: taxon id

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HPA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ST611 (BAPS cluster 4)

characteristic: description

text: Legionella pneumophila

text: Legionella pneumophila


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: lat lon

text: viral metagenome

text: viral metagenome

text: Comparison of PolB and MCP6 to study Prasinovirus diversity


text: CCME-COLORADO

text: public

text: qiime_study_1522:tp1.CI.E03.11dpc.2Ln54.7

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: human gut metagenome

characteristic: common name

characteristic: depth

text: CultureInitiativeExperiment.ArrayedInvasion

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

text: human gut metagenome

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

characteristic: batch

characteristic: collection date

text: compost metagenome

characteristic: common name

characteristic: depth

text: compost sample from Vermicompost

characteristic: description

text: compost sample from Vermicompost

text: ENVO:cropland

text: ENVO:farm

text: ENVO:compost

text: Process,Process through time

text: GAZ:United States of America

text: compost metagenome

text: y

characteristic: sample name

text: compost metagenome

text: Highfields Center for Composting, Hardwick, Vermont

characteristic: site description

characteristic: taxon id

text: compost microbiome

characteristic: title

text: V

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1523:tp1.Obese.DTFD.E01.Stomach.PM59

text: y

text: UBERON:stomach

characteristic: body habitat

text: UBERON:mucosa of stomach

characteristic: body product

text: UBERON:mucosa of stomach

characteristic: body site

text: mouse gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

text: mouse gut metagenome

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Lean.K02.LoSFHiFV.7dpc.A8

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: Mice_colonized_with_samples_from_discordant_twins_for_obeseity_and_fed_one_of_two_NHANES_based_diets

characteristic: description

text: LoSFHiFV

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

text: n

characteristic: sample name

text: human gut metagenome

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiime_study_1522:tp1.Lean.CI.E01.Cultured.1dpc.CI20

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

text: human gut metagenome

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp3.Obese.DTFD.E04.14dpc.D10

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

text: n

characteristic: sample name

text: human gut metagenome

characteristic: taxon id

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WUSL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Low fat high plant polysacharides

text: host associated

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: house mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

characteristic: organism

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: Mouse fecal sample for COPRO-Seq


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.CI.E03.5dpc.2Ln54.9

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp3.Obese.DTFD.E04.3dpc.D9

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: LowFat-RichinPlantPolysaccharide Chow

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

text: Cultured gut bacterial consortia from twins discordant for obesity modulate adiposity in gnotobiotic mice


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1522:tp1.CI.E08.LoSFHiFV.2dpc.Ob.A15

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: Mice_colonized_with_samples_from_discordant_twins_forobeseity

characteristic: description

text: LoSFHiFV

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.Obese.Cohoused.CI.E02.7dpc.E11

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: LowFat-RichinPlantPolysaccharide Chow

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: n

text: Mice ceca

text: UBERON:cecum

text: UBERON:cecum

text: fecal samples from mice colonized with the culture collection from DZ twin pair 1

characteristic: description

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: gut metagenome

text: Titanium

characteristic: sequencing technology

characteristic: taxon id

characteristic: title

text: Cecal micro biome of mice humanized with the uncultured and cultured microbiota from twins discordant for obesity


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: Adequate weight female stool sample

text: Adequate weight female stool sample

text: ENVO:human-associated habitat

text: ENVO:human-associated habitat

text: ENVO:feces

text: GAZ:Colombia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: human gut metagenome

characteristic: organism

text: y

text: human gut metagenome

characteristic: sex

text: Human gut microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: UMCU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: Sample 1 from carcinosarcoma left ovary patient 2

characteristic: title


text: CCME-COLORADO

text: public

characteristic: altitude

characteristic: anonymized name

text: n

characteristic: collection date

text: Jordan Kueneman

characteristic: collector name

text: freshwater metagenome

characteristic: common name

characteristic: depth

text: Lake_water_from_site_Little Carribou

characteristic: description

text: Lake_water_from_site_Little Carribou

characteristic: elevation

text: ENVO:freshwater biome

characteristic: env biome

text: ENVO:freshwater lake

characteristic: env feature

text: ENVO:fresh water

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Lake water

characteristic: latitude

characteristic: longitude

text: freshwater metagenome

text: Trinity

characteristic: park

text: Declining

characteristic: ph

text: n

characteristic: public

characteristic: redox potential

text: swab

characteristic: sample id

characteristic: sample name

text: Little Carribou

characteristic: sample site

text: CA

characteristic: sample state

text: freshwater metagenome

characteristic: spcond

text: mS/cm

characteristic: taxon id

characteristic: temp

text: The amphibian skin microbiome across species, space and life history stages

text: dipnet

characteristic: trap type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European Molecular Biology Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:European Molecular Biology Laboratory

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: C. elegans strain PS1010 was grown on nutrient agar (Difco) supplemented with 0.1% v/v cholesterol in the presence of E. coli HB101. Qiagen RNeasy Illumina mRNA-seq library construction protocol

characteristic: description

text: L3 larvae

characteristic: developmental stage

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: Caenorhabditis elegans

characteristic: strain

characteristic: title


text: CCME-COLORADO

text: public

text: qiime_study_1522:tp2.Obese.K02.LoSFHiFV.7dpc.B7

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: LoSFHiFV

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


E-MTAB-1720:Control D

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-1720:Control D

tag: Namespace:University of Edinburgh

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Candida albicans (strain CAI4-CIp10) was grown in YPD-T (Tris buffered YPD: 2% w/v glucose, 2% w/v mycological peptone, 1% w/v yeast extract, 100 mM Tris.HCl, pH 7.4) to mid-exponential phase Cultures were split and exposed to stresses in fresh medium at an OD600 of 0.2. Biological triplicate cultures were processed After 10 min cells were flash frozen in liquid nitrogen and RNA was extracted using Qiazol (phenol/chloroform method). RNA was DNase treated using Ambion Turbo DNAfree kit before being sent for library preparation and sequencing. Libraries were prepared using standard Illumina RNAseq library preparation kit.

characteristic: description

text: ura3::imm434/ura3::imm434 + CIp12

text: Candida albicans

characteristic: organism

text: Candida albicans

text: Candida albicans

text: frozen specimen

characteristic: specimen with known storage state

characteristic: strain

text: Control D

characteristic: title


text: CCME-COLORADO

text: public

text: qiime_study_1522:tp1.CI.E03.2dpc.3Ln37.6

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: CultureInitiativeExperiment.ArrayedInvasion

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1523:tp4.Lean.DTFD.E02.Cecum1.PM75

text: y

text: UBERON:cecum

text: UBERON:cecum mucosa

text: UBERON:cecum mucosa

text: mouse gut metagenome

text: ALG samples for mice colonized with the Microbiota of co-twins discordant for obesity

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: MetaHIT-Richness

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1522:tp1.Obese.DTFD.E03.SI15.PM92

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:small intestine

characteristic: body habitat

text: UBERON:mucosa of small intestine

characteristic: body product

text: UBERON:mucosa of small intestine

characteristic: body site

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.Obese.notCohoused.CI.E02.Stomach.A5

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:stomach

characteristic: body habitat

text: UBERON:mucosa of stomach

characteristic: body product

text: UBERON:mucosa of stomach

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: CultureInitiativeExperiment.BattleRoyale

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1523:tp1.Obese.DTFD.E01.Cecum2.PM51

text: y

text: UBERON:cecum

text: UBERON:cecum mucosa

text: UBERON:cecum mucosa

text: mouse gut metagenome

text: alg SAMPLES FOR TWIN 16_17. cecum1.C sequenced with time course

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: sex

characteristic: taxon id

text: Cultured gut bacterial consortia from twins discordant for obesity modulate adiposity in gnotobiotic mice


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Obese.K02.HiSFLoFV.8dpc.B16

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: Mice_colonized_with_samples_from_discordant_twins_for_obeseity_and_fed_one_of_two_NHANES_based_diets

characteristic: description

text: HiSFLoFV

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1522:tp1.Lean.notCohoused.CI.E02.3dpc.B6

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WUSL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Low fat high plant polysacharides

characteristic: diet

text: host associated

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: house mouse

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

characteristic: organism

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: Mouse fecal sample for COPRO-Seq

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp1.Obese.DTFD.E01.SI13.PM52

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:small intestine

characteristic: body habitat

text: UBERON:mucosa of small intestine

characteristic: body product

text: UBERON:mucosa of small intestine

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

text: GAZ:United States of America

text: mouse

text: mouse gut metagenome

characteristic: organism

text: n

text: mouse gut metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiime_study_1522:tp1.CI.E03.3dpc.3Ln37.6

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: Mice ceca

text: UBERON:cecum

characteristic: body habitat

text: UBERON:cecum

characteristic: body product

characteristic: depth

text: fecal samples from mice colonized with the unculture collection from DZ twin pair 3

characteristic: description

characteristic: donor

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: GAZ:United States of America

text: gut metagenome

characteristic: organism

text: n

text: gut metagenome

text: Titanium

characteristic: sequencing technology

characteristic: title

text: Cecal micro biome of mice humanized with the uncultured and cultured microbiota from twins discordant for obesity


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

text: public

text: Adult

characteristic: age group

text: n

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of back

characteristic: body site

characteristic: collection date

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

characteristic: common name

text: Rana cascadae_from_site_Section line

text: Rana cascadae_from_site_Section line

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Cascades Frog

characteristic: host common name

text: Rana cascadae

characteristic: host species

characteristic: host subject id

characteristic: host taxid

text: Raca

characteristic: latitude

characteristic: longitude

text: organismal metagenomes

text: Trinity

characteristic: park

text: Persisiting

characteristic: ph

text: n

characteristic: public

characteristic: redox potential

text: R

text: swab

characteristic: sample id

characteristic: sample name

text: Section line

characteristic: sample site

text: CA

characteristic: sample state

text: organismal metagenomes

characteristic: sex

characteristic: spcond

text: mS/cm

characteristic: taxon id

characteristic: temp

text: The amphibian skin microbiome across species, space and life history stages

text: dipnet

characteristic: trap type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Obese.K02.LoSFHiFV.5dpc.B2

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LoSFHiFV

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp4.Obese.DTFD.E02.1dpc.PM71

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

text: mouse gut metagenome

text: DTFD Monozygotic Discordant Twins

text: DTFD Monozygotic Discordant Twins

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: donor

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: mouse

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sub-adult

characteristic: age group

text: n

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of back

characteristic: body site

characteristic: collection date

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

characteristic: common name

characteristic: depth

text: Anaxyrus boreas_from_site_Eagle lake

characteristic: description

text: Anaxyrus boreas_from_site_Eagle lake

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: boreal toad

characteristic: host common name

text: Anaxyrus boreas

characteristic: host species

characteristic: host subject id

text: Anbo

text: organismal metagenomes

characteristic: organism

characteristic: park

characteristic: ph

text: n

characteristic: redox potential

text: NR

text: swab

text: Eagle lake

characteristic: sample site

text: CA

characteristic: sample state

text: organismal metagenomes

characteristic: spcond

text: mS/cm

characteristic: temp

characteristic: title

text: dipnet

characteristic: trap type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HPA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ST54 (BAPS cluster 3)

characteristic: description

text: Legionella pneumophila

text: Legionella pneumophila


text: CCME-COLORADO

text: public

text: Sub-adult

characteristic: age group

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin of back

characteristic: body site

characteristic: collection date

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

characteristic: common name

characteristic: depth

text: Anaxyrus boreas_from_site_Yerba Bueunknown

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: boreal toad

characteristic: host common name

text: Anaxyrus boreas

characteristic: host species

characteristic: host subject id

characteristic: host taxid

text: Anbo

characteristic: latitude

characteristic: longitude

text: organismal metagenomes

characteristic: organism

characteristic: park

characteristic: ph

text: n

characteristic: public

characteristic: redox potential

text: NR

text: swab

characteristic: sample id

characteristic: sample name

text: Yerba Bueunknown

characteristic: sample site

text: CA

text: organismal metagenomes

text: mS/cm

characteristic: taxon id

text: dipnet


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.CI.E08.LoSFHiFV.6dpc.Ob.A14

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: Mice_colonized_with_samples_from_discordant_twins_forobeseity

characteristic: description

text: LoSFHiFV

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

text: n

text: human gut metagenome

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Obese.K02.LoSFHiFV.7dpc.B6

characteristic: Submitter Id

characteristic: altitude

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: LoSFHiFV

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1522:tp1.GermFree.Cohoused.CI.E02.12dpc.F14

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: CultureInitiativeExperiment.BattleRoyale

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

text: n

text: human gut metagenome

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.CI.E03.3dpc.3Ln37.8

characteristic: Submitter Id

characteristic: altitude

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: CultureInitiativeExperiment.ArrayedInvasion

text: LowFat-RichinPlantPolysaccharide Chow

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: taxon id

text: Cultured gut bacterial consortia from twins discordant for obesity modulate adiposity in gnotobiotic mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1452:fut2positive.day28.59.Regular

text: n

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Regular

characteristic: chow

text: All samples collected between Sept. 2010 and Dec. 2011

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: WT mouse fecal sample

characteristic: description

text: WT mouse fecal sample

text: Regular chow

characteristic: elevation

text: ENVO:mammalia-associated habitat

characteristic: env biome

text: ENVO:mammalia-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: WT

characteristic: genotype

text: GAZ:United States of America

text: mouse gut metagenome

text: n

text: .1, g

characteristic: sampling day

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: CNB/CSIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CAACGCGAAGAACCTTACC,CGACAGCCATGCANCACCT

characteristic: adapters

characteristic: collection date

text: Untreated soil, second sampling time

text: agricultural rhizosphere

characteristic: environment (biome)

text: agricultural soil

characteristic: environment (feature)

text: rhizosphere

characteristic: environment (material)

text: soil

characteristic: environmental package

text: Spain

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CTCGCGTGTC

characteristic: multiplex identifiers

text: Zea mays

characteristic: organism

characteristic: pooling of DNA extracts (ifdone)

text: Herbicide effects on maize rhizobacteria

characteristic: project name

text: Zea mays

text: pyrosequencing

characteristic: sequencing method

text: V6 on 16S rRNA

characteristic: target subfragment

text: Untreated soil T2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.CI.E08.LoSFHiFV.2dpc.Ln.B3

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LoSFHiFV

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id

characteristic: title


E-MTAB-1720:OS+NS D

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-1720:OS+NS D

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Candida albicans (strain CAI4-CIp10) was grown in YPD-T (Tris buffered YPD: 2% w/v glucose, 2% w/v mycological peptone, 1% w/v yeast extract, 100 mM Tris.HCl, pH 7.4) to mid-exponential phase Cultures were split and exposed to stresses in fresh medium at an OD600 of 0.2. Biological triplicate cultures were processed After 10 min cells were flash frozen in liquid nitrogen and RNA was extracted using Qiazol (phenol/chloroform method). RNA was DNase treated using Ambion Turbo DNAfree kit before being sent for library preparation and sequencing. Libraries were prepared using standard Illumina RNAseq library preparation kit.

characteristic: description

text: ura3::imm434/ura3::imm434 + CIp27

text: Candida albicans

characteristic: organism

text: Candida albicans

text: Candida albicans

text: frozen specimen

characteristic: specimen with known storage state

characteristic: strain

text: OS+NS D


text: CCME-COLORADO

text: public

text: qiime_study_1522:tp1.Obese.CI.E01.Cultured.2dpc.CI13

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp1.Obese.DTFD.E03.24dpc.PM94

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: donor

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: mouse

text: mouse gut metagenome

characteristic: organism

text: n

text: mouse gut metagenome

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiime_study_1522:tp2.Obese.K02.LoSFHiFV.4dpc.B8

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: Mice_colonized_with_samples_from_discordant_twins_for_obeseity_and_fed_one_of_two_NHANES_based_diets

text: LoSFHiFV

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

characteristic: collection date

text: compost metagenome

characteristic: common name

characteristic: depth

text: compost sample from Hardwood compost control

characteristic: description

text: ENVO:cropland

text: ENVO:farm

text: ENVO:compost

text: Recipe

text: GAZ:United States of America

text: compost metagenome

characteristic: organism

text: y

text: compost metagenome

text: Intervale Community Farms, Burlington, Vermont

characteristic: site description

characteristic: taxon id

characteristic: title

text: compost microbiome

text: HW

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETMEDUNI

characteristic: INSDC center name

text: public

text: pig

text: ileocaecal lymphnode

text: Lymphnode

characteristic: environment (biome)

text: Pig

characteristic: environment (feature)

text: lymphatic tissue

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Sus scrofa

text: lymphnode

characteristic: project name

text: Sus scrofa

text: pyrosequencing

characteristic: sequencing method

text: lymphnode


text: PTP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: water buffalo

characteristic: common name

text: Bubalus bubalis

characteristic: organism

text: Bubalus bubalis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

text: public

text: qiime_study_1523:tp1.Lean.DTFD.E01.3dpc.PM55

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: depth

text: 16s time course analysis of cecal contents collected from mice colonized with discordant twins microbiota

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: sex

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp1.Obese.DTFD.E01.SI2.PM52

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:small intestine

characteristic: body habitat

text: UBERON:mucosa of small intestine

characteristic: body product

text: UBERON:mucosa of small intestine

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: alg SAMPLES FOR TWIN 16_17. cecum1.C sequenced with time course

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

text: GAZ:United States of America

text: mouse

text: mouse gut metagenome

characteristic: organism

text: n

text: mouse gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WUSL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Low fat high plant polysacharides

text: host associated

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: house mouse

characteristic: host common name

text: 7, 8

characteristic: host subject id

characteristic: host taxid

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

characteristic: project name

text: mouse gut metagenome

text: 454 FLX titanium

characteristic: sequencing method

text: Mouse fecal sample for VLP-purification and 454 Sequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.CI.E03.7dpc.2Ln54.6

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: CultureInitiativeExperiment.ArrayedInvasion

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id

text: Cultured gut bacterial consortia from twins discordant for obesity modulate adiposity in gnotobiotic mice


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

characteristic: age group

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin of back

characteristic: body site

characteristic: collection date

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

characteristic: common name

characteristic: depth

text: Rana cascadae_from_site_26186

text: Rana cascadae_from_site_26186

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:sebum

text: GAZ:United States of America

text: Cascades Frog

characteristic: host common name

text: Rana cascadae

characteristic: host species

characteristic: host subject id

characteristic: host taxid

text: Raca

text: organismal metagenomes

text: Trinity

characteristic: park

text: Declining

characteristic: ph

text: n

characteristic: redox potential

text: R

text: swab

characteristic: sample site

text: CA

characteristic: sample state

text: organismal metagenomes

characteristic: spcond

text: mS/cm

characteristic: temp

characteristic: title

text: The amphibian skin microbiome across species, space and life history stages

text: dipnet

characteristic: trap type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: MetaHIT-Richness

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish


endometrium

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PTP

characteristic: INSDC center name

text: public

text: endometrium

text: water buffalo

characteristic: common name

text: Bubalus bubalis

text: Bubalus bubalis

text: endometrium

characteristic: title


text: WUSL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Low fat high plant polysacharides

characteristic: diet

text: host associated

characteristic: environment (biome)

text: gut

text: feces

text: host-associated

text: USA

text: house mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: metagenome

text: mouse gut metagenome

text: mouse gut metagenome

text: Illumina

text: Mouse fecal sample for COPRO-Seq