text: UOM

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 10 males from a nos-GAL4; UAS-DCR2 strain (source: Greg Hannon Lab)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Male

text: Whole organism

text: nos-GAL4; UAS-DCR2


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF KONSTANZ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF KONSTANZ

characteristic: Submitter Id

text: green swordtail

characteristic: common name

text: Xiphophorus hellerii

characteristic: organism

text: Xiphophorus hellerii

characteristic: title


text: public

tag: Namespace:University Medical Center Hamburg-Eppendorf

text: house mouse

text: Wild type

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: WT; SC35-PB2 701D

text: SC35-PB2 701D

characteristic: virus


text: University Medical Center Hamburg-Eppendorf

text: public

text: house mouse

text: Wild type

text: Mus musculus

text: Mus musculus

text: WT; Control

text: Control


text: public

text: house mouse

text: Importin-alpha3 knockout

text: Mus musculus

text: Mus musculus

text: Importin-alpha3 knockout; Control

text: Control


text: public

text: house mouse

text: Importin-alpha3 knockout

text: Mus musculus

text: Mus musculus

text: Importin-alpha3 knockout; SC35-PB2 701D

text: SC35-PB2 701D


text: public

text: house mouse

text: Importin-alpha3 knockout

text: Mus musculus

text: Mus musculus

text: Importin-alpha3 knockout; SC35M-PB2 701N

text: SC35M-PB2 701N


text: public

text: house mouse

text: Wild type

text: Mus musculus

text: Mus musculus

text: WT; SC35M-PB2 701N

text: SC35M-PB2 701N


text: IPK-Gatersleben

text: public

text: Hordeum bulbosum introgression donor Hb 2929_1

characteristic: description

text: Hordeum bulbosum

text: Hordeum bulbosum


text: NATIONAL INSTITUTE OF GENETICS

text: public

tag: Namespace:NATIONAL INSTITUTE OF GENETICS

text: crab-eating macaque

text: Mauritian cynomolgus macaque, male, blood

text: Macaca fascicularis

text: Macaca fascicularis

text: male

characteristic: sex

text: blood

characteristic: tissue type

text: Mauritian cyonomolgus macaque


text: University of York

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of York

text: Pseudomonas fluorescens SBW25 carrying environmental mercury resistance plasmid pQBR57

text: Pseudomonas fluorescens SBW25

text: Pseudomonas fluorescens SBW25

text: Pseudomonas fluorescens SBW25 with pQBR57


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UOM

text: public

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 50 females from an isofemale line collected in Montpellier, France (2010)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 23

type: has member


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 24


text: UOM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 25


text: UOM

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 26


text: UOM

text: public

text: fruit fly

characteristic: common name

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 28


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 29

characteristic: title


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 30


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 31


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 32


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 33


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 34


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 35


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 37


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 38


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 39


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 42


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 44


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 45


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 46


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France 48


text: UOM

text: public

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 1 female each from 20 isofemale lines collected in Montpellier, France (2010)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France pool20


text: UOM

text: public

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 1 female each from 39 isofemale lines collected in Montpellier, France (2010)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill France pool39


text: UOM

text: public

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 25 females from an isofemale line collected in Athens, Georgia (2009)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 01


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 02


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 03


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 04


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 05


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 06


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 07


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 08


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 09


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 10


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 11


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 12


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 13


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 15


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia 17


text: UOM

text: public

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 1 female each from 15 isofemale lines collected in Athens, Georgia (2009)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia pool15


text: UOM

text: public

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 1 female each from 30 isofemale lines collected in Athens, Georgia (2009)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Georgia pool30


text: UOM

text: public

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 25 females from an isofemale line collected in Accra, Ghana (2010)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 01


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 02


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 04


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 05


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 06


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 08


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 09


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 10


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 11


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 12


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 14


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 15


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 16


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 17


text: UOM

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana 18


text: UOM

text: public

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 1 female each from 15 isofemale lines collected in Accra, Ghana (2010)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana pool15


text: UOM

text: public

text: fruit fly

text: Whole genome shotgun sequences of DNA extracted from 1 female each from 32 isofemale lines collected in Accra, Ghana (2010)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Whole organism

text: Haddrill Ghana pool32


text: NIOB

text: public

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: University of York

text: public

text: Pseudomonas fluorescens SBW25 carrying environmental mercury resistance plasmid pQBR55

text: Pseudomonas fluorescens SBW25

text: Pseudomonas fluorescens SBW25

text: Pseudomonas fluorescens SBW25 with pQBR55


text: University of York

text: public

text: Pseudomonas putida UWC1 carrying environmental mercury resistance plasmid pQBR44

text: Pseudomonas putida UWC1

text: Pseudomonas putida UWC1

text: Pseudomonas putida UWC1 with pQBR44


text: University of York

text: public

text: Pseudomonas putida UWC1 carrying environmental mercury resistance plasmid pQBR57

text: Pseudomonas putida UWC1

text: Pseudomonas putida UWC1

text: Pseudomonas putida UWC1 with pQBR57


text: University of York

text: public

text: Pseudomonas putida UWC1 carrying environmental mercury resistance plasmid pQBR55

text: Pseudomonas putida UWC1

text: Pseudomonas putida UWC1

text: Pseudomonas putida UWC1 with pQBR55


text: EMBL

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: EMBL

text: public

text: human

text: Homo sapiens

text: Homo sapiens


RKLL

text: BGI SHENZHEN

text: public

text: BGI

text: RKLL

tag: Namespace:BGI SHENZHEN

text: Copaifera officinalis

text: leaves

text: J. Burris, B. Joyce, N. Stewart

text: Copaifera officinalis

text: Stewart and Burris

text: leaves

text: OneKP Legume


PEZP

text: BGI SHENZHEN

text: public

text: M. Deyholos

text: PEZP

text: Glycyrrhiza glabra

text: roots and young shoots

text: M. K. Deyholos

text: Glycyrrhiza glabra

text: M.K. Deyholos 2011-40

text: shoot (no flower) and root

text: OneKP Legume


RKFX

text: BGI SHENZHEN

text: public

text: BGI

text: RKFX

text: Cercis canadensis

text: flowers and leaves

text: S. Cannon

text: Cercis canadensis

text: Cannon 0001

text: leaves and young flowers

text: OneKP Legume


KZED

text: BGI SHENZHEN

text: public

text: BGI

text: KZED

text: Senna hebecarpa

text: young shoots and young leaves

text: S. Cannon

text: Senna hebecarpa

text: Cannon 0005

text: young leaves and shoot

text: OneKP Legume


XOOE

text: BGI SHENZHEN

text: public

text: BGI

text: XOOE

text: Desmanthus illinoensis

text: young shoots and young leaves

text: S. Cannon

text: Desmanthus illinoensis

text: Cannon 0006

text: young leaves and shoot

text: OneKP Legume


NXOH

text: BGI SHENZHEN

text: public

text: BGI

text: NXOH

text: Apios americana

text: roots and young shoots

text: S. Cannon

text: Apios americana

text: Cannon 0007

text: young shoot and tuber

text: OneKP Legume


KNMB

text: BGI SHENZHEN

text: public

text: S. Cannon

text: KNMB

text: Lathyrus sativus

text: roots and young shoots

text: S. Cannon

text: Lathyrus sativus

text: Cannon 25

text: young shoot and tuber

text: OneKP Legume


HJMP

text: BGI SHENZHEN

text: public

text: M. Deyholos

text: HJMP

text: Astragalus membranaceus

text: roots and young shoots

text: M. K. Deyholos

text: Astragalus membranaceus

text: M.K. Deyholos 2013-03 (ALTA)

text: shoot (no flower) and root

text: OneKP Legume


JETM

text: BGI SHENZHEN

text: public

text: Yu Yang

text: JETM

text: Bauhinia tomentosa

text: leaves

text: M. K. Deyholos

text: Bauhinia tomentosa

text: M.K. Deyholos 2013-30

text: leaf

text: OneKP Legume


ZSSR

text: BGI SHENZHEN

text: public

text: Yu Yang

text: ZSSR

text: Xanthocercis zambesiaca

text: leaves

text: M. K. Deyholos

text: Xanthocercis zambesiaca

text: M.K. Deyholos 2013-24 (ALTA)

text: leaf

text: OneKP Legume


OHAE

text: BGI SHENZHEN

text: public

text: J. Leebens-Mack

text: OHAE

text: Polygala lutea

text: flowers and vegetative buds

text: J. Leebens-Mack

text: Polygala lutea

text: J. Leebens-Mack 2013-59 (GA)

text: leaf buds and flowers

text: OneKP Legume


OQHZ

text: BGI SHENZHEN

text: public

text: BGI

text: OQHZ

text: Kew: Q. saponaria Molina

text: Quillaja saponaria

text: leaves

text: M. Chase

text: Quillaja saponaria

text: Chase 33146 (K)

text: leaves

text: OneKP Legume


LWDA

text: BGI SHENZHEN

text: public

text: D. Soltis

text: LWDA

text: Alnus serrulata

text: inflorescences and young leaves

text: D. Soltis

text: Alnus serrulata

text: Soltis and Miles 2964

text: young leaves, young inflorescence

text: OneKP Legume


GVCB

text: BGI SHENZHEN

text: public

text: M. Johnson

text: GVCB

text: MTJ-id# 529 / strain longiflora Erlagen (seeds from S. Greiner)

text: Oenothera affinis

text: young leaves

text: M. Johnson

text: Oenothera affinis

text: M. Johnson 529

text: young true leaves from seedlings

text: OneKP Oenothera


KBRW

text: BGI SHENZHEN

text: public

text: M. Johnson

text: KBRW

text: MTJ-id# 390 / Seeds from Ornamental Plant Germplasm Center.

text: Oenothera clelandii

text: young leaves

text: M. Johnson

text: Oenothera clelandii

text: M. Johnson 390

text: young true leaves from seedlings

text: OneKP Oenothera


NQWS

text: BGI SHENZHEN

text: public

text: BGI

text: NQWS

text: MTJ-id# 377 / 1.5 mi W of US 75 and SH 3 jct on US 75, south roadside. Atoka Co OK

text: Oenothera filiformis

text: young leaves

text: M. Johnson

text: Oenothera filiformis

text: M. Johnson 377

text: young true leaves from seedlings

text: OneKP Oenothera


ECSL

text: BGI SHENZHEN

text: public

text: M. Johnson

text: ECSL

text: MTJ-id# 381 / Lat Long: 31.72386, 88.19637. County Rd 31 at Aspen Rd. Alabama USA

text: Oenothera filiformis

text: young leaves

text: M. Johnson

text: Oenothera filiformis

text: M. Johnson 381

text: young true leaves from seedlings

text: OneKP Oenothera


JYOB

text: BGI SHENZHEN

text: public

text: M. Johnson

text: JYOB

text: MTJ-id# 380 / Lat. Lat: 31.73105, 88.16655. County Rd 31, Alabama USA.

text: Oenothera filiformis

text: young leaves

text: M. Johnson

text: Oenothera filiformis

text: M. Johnson 380

text: young true leaves from seedlings

text: OneKP Oenothera


TGOP

text: BGI SHENZHEN

text: public

text: BGI

text: TGOP

text: MTJ-id# 402 / Ellis Hollow Rd, Ithaca, Tompkins CO, NY, USA

text: Oenothera gaura

text: young leaves

text: M. Johnson

text: Oenothera gaura

text: M. Johnson 402

text: young true leaves from seedlings

text: OneKP Oenothera


LACT

text: BGI SHENZHEN

text: public

text: M. Johnson

text: LACT

text: MTJ-id# 651 / Belchentown, MA, USA

text: This sample was not analyzed for the 1KP publication [Nature 574, 679–685 (2019)] because it was identified as mislabeled and/or contaminated. We released the data nonetheless as some find even these data useful. More information is given at [GigaScience 8, giz126 (2019)], including estimates of which particular sequences might be problematic.

characteristic: details

text: Oenothera gaura

text: young leaves

text: M. Johnson

text: Oenothera gaura

text: M. Johnson 651

text: mislabelled or contaminated

characteristic: status

text: young true leaves from seedlings

text: OneKP Oenothera


LHDP

text: BGI SHENZHEN

text: public

text: M. Johnson

text: LHDP

text: MTJ-id# 673 / OPGC accession 2118

characteristic: description

text: Oenothera gaura

text: young leaves

text: M. Johnson

text: Oenothera gaura

text: M. Johnson 673

text: young true leaves from seedlings

text: OneKP Oenothera


IIFB

text: BGI SHENZHEN

text: public

text: M. Johnson

text: IIFB

text: MTJ-id# 677 / OPGC accession 1867

text: Oenothera gaura

text: young leaves

text: M. Johnson

text: Oenothera gaura

text: M. Johnson 677

text: mislabelled or contaminated

text: young true leaves from seedlings

text: OneKP Oenothera


REZJ

text: BGI SHENZHEN

text: public

text: BGI

text: REZJ

text: MTJ-id# 666 / strain BBA Castleberry A-4 (seeds from S. Greiner)

text: Oenothera grandiflora

text: young leaves

text: M. Johnson

text: Oenothera grandiflora

text: M. Johnson 666

text: young true leaves from seedlings

text: OneKP Oenothera


MJHP

text: BGI SHENZHEN

text: public

text: M. Johnson

text: MJHP

text: MTJ-id# 562 / UTM: 16R, 0389602m East, 3498655m. Bigbee, AL, USA.perpendicular to road at house #241.  Ask the nice lady for permission to collect.  She is eager to please.

text: Oenothera grandiflora

text: young leaves

text: M. Johnson

text: Oenothera grandiflora

text: M. Johnson 562

text: young true leaves from seedlings

text: OneKP Oenothera


GZUR

text: BGI SHENZHEN

text: public

text: M. Johnson

text: GZUR

text: MTJ-id# 564 / UTM: 16R, 0405820m East, 3511827m, Coffeeville, AL, USA

text: Oenothera grandiflora

text: young leaves

text: M. Johnson

text: Oenothera grandiflora

text: M. Johnson 564

text: young true leaves from seedlings

text: OneKP Oenothera


EBPG

text: BGI SHENZHEN

text: public

text: BGI

text: EBPG

text: MTJ-id# 538 / strain Tuscaloosa (seeds from Greiner)

text: Oenothera grandiflora

text: young leaves

text: M. Johnson

text: Oenothera grandiflora

text: M. Johnson 538

text: young true leaves from seedlings

text: OneKP Oenothera


HOOU

text: BGI SHENZHEN

text: public

text: M. Johnson

text: HOOU

text: MTJ-id# 541 / strain Bellamy A (seeds from S. Greiner)

text: Oenothera grandiflora

text: young leaves

text: M. Johnson

text: Oenothera grandiflora

text: M. Johnson 541

text: young true leaves from seedlings

text: OneKP Oenothera


SEMK

text: BGI SHENZHEN

text: public

text: BGI

text: SEMK

text: MTJ-id# 206 / OPGC accession: Edwards Co. KS

text: Oenothera grandis

text: young leaves

text: M. Johnson

text: Oenothera grandis

text: M. Johnson 206

text: young true leaves from seedlings

text: OneKP Oenothera


ICUS

text: BGI SHENZHEN

text: public

text: BGI

text: ICUS

text: MTJ-id# 98 / Stengl Biological Station, UTM: 14R, 0676016, 3329856, Bastrop Co TX / was ID# IRAF

text: Oenothera laciniata

text: young leaves

text: M. Johnson

text: Oenothera laciniata

text: M. Johnson 98

text: young true leaves from seedlings

text: OneKP Oenothera


HPNZ

text: BGI SHENZHEN

text: public

text: M. Johnson

text: HPNZ

text: MTJ-id# 678

text: Oenothera longituba

text: young leaves

text: M. Johnson

text: Oenothera longituba

text: M. Johnson 678

text: expanding 4th true leaf from seedling

text: OneKP Oenothera


CJGZ

text: BGI SHENZHEN

text: public

text: M. Johnson

text: CJGZ

text: MTJ-id# 0233

text: Oenothera nana

text: young leaves

text: M. Johnson

text: Oenothera nana

text: M. Johnson 0233

text: expanding 4th true leaf from seedling

text: OneKP Oenothera


DZLN

text: BGI SHENZHEN

text: public

text: M. Johnson

text: DZLN

text: MTJ-id# 655 / strain odorata Schwemmle (seed from S. Greiner)

text: Oenothera picensis

text: young leaves

text: M. Johnson

text: Oenothera picensis

text: M. Johnson 655

text: expanding 4th true leaf from seedling

text: OneKP Oenothera


YHLF

text: BGI SHENZHEN

text: public

text: M. Johnson

text: YHLF

text: MTJ-id# 369

text: Oenothera rhombipetala

text: young leaves

text: M. Johnson

text: Oenothera rhombipetala

text: M. Johnson 369

text: expanding 4th true leaf from seedling

text: OneKP Oenothera


FXJC

text: BGI SHENZHEN

text: public

text: BGI

text: FXJC

text: MTJ-id# 672 / OPGC accession PI 304970 (100 seeds)

text: Oenothera rosea

text: young leaves

text: M. Johnson

text: Oenothera rosea

text: M. Johnson 672

text: young true leaves from seedlings

text: OneKP Oenothera


XSNO

text: BGI SHENZHEN

text: public

text: M. Johnson

text: XSNO

text: MTJ-id# 71

text: Oenothera rosea

text: young leaves

text: M. Johnson

text: Oenothera rosea

text: M. Johnson 71

text: expanding 4th true leaf from seedling

text: OneKP Oenothera


HKMQ

text: BGI SHENZHEN

text: public

text: M. Johnson

text: HKMQ

text: MTJ-id# 535 / strain berteriana Schwemmle (seeds from S. Greiner)

text: Oenothera villaricae

text: young leaves

text: M. Johnson

text: Oenothera villaricae

text: M. Johnson 535

text: young true leaves from seedlings

text: OneKP Oenothera


AQXA

text: BGI SHENZHEN

text: public

text: AQXA

text: Oenothera laciniata

text: Oenothera laciniata

text: OneKP Oenothera


CHTD

text: BGI SHENZHEN

text: public

text: CHTD

text: Oenothera grandis

text: Oenothera grandis

text: OneKP Oenothera


DIBI

text: BGI SHENZHEN

text: public

text: DIBI

text: Oenothera laciniata

text: Oenothera laciniata

text: OneKP Oenothera


EQYT

text: BGI SHENZHEN

text: public

text: EQYT

text: Oenothera berlandieri

text: Oenothera berlandieri

text: OneKP Oenothera


EWHG

text: BGI SHENZHEN

text: public

text: EWHG

text: Oenothera grandis

text: Oenothera grandis

text: OneKP Oenothera


GBGW

text: BGI SHENZHEN

text: public

text: GBGW

text: Oenothera speciosa

text: Oenothera speciosa

text: OneKP Oenothera


JMJV

text: BGI SHENZHEN

text: public

text: JMJV

text: Oenothera gaura

text: Oenothera gaura

text: OneKP Oenothera


KFAL

text: BGI SHENZHEN

text: public

text: KFAL

text: Oenothera rosea

text: Oenothera rosea

text: OneKP Oenothera


ONZG

text: BGI SHENZHEN

text: public

text: ONZG

text: Oenothera laciniata

text: Oenothera laciniata

text: OneKP Oenothera


QBRF

text: BGI SHENZHEN

text: public

text: QBRF

text: Oenothera laciniata

text: Oenothera laciniata

text: OneKP Oenothera


RLZU

text: BGI SHENZHEN

text: public

text: RLZU

text: Oenothera speciosa

text: Oenothera speciosa

text: OneKP Oenothera


SJAN

text: BGI SHENZHEN

text: public

text: SJAN

text: Oenothera serrulata

text: Oenothera serrulata

text: OneKP Oenothera


TAHF

text: BGI SHENZHEN

text: public

text: TAHF

text: Oenothera grandis

text: Oenothera grandis

text: OneKP Oenothera


UASK

text: BGI SHENZHEN

text: public

text: UASK

text: Oenothera speciosa

text: Oenothera speciosa

text: OneKP Oenothera


WPUV

text: BGI SHENZHEN

text: public

text: WPUV

text: Oenothera grandis

text: Oenothera grandis

text: OneKP Oenothera


XZAQ

text: BGI SHENZHEN

text: public

text: XZAQ

text: Oenothera speciosa

text: Oenothera speciosa

text: OneKP Oenothera


XZPP

text: BGI SHENZHEN

text: public

text: XZPP

text: Oenothera speciosa

text: Oenothera speciosa

text: OneKP Oenothera


YIVZ

text: BGI SHENZHEN

text: public

text: YIVZ

text: Oenothera rosea

text: Oenothera rosea

text: OneKP Oenothera


text: Barta

text: public

text: Utricularia adpressa

text: Utricularia adpressa

text: Raw reads of Utricularia vulgaris normalized transcriptome


text: public

tag: Namespace:University Hospital Marques de Valdecilla

text: Klebsiella pneumoniae subsp. pneumoniae MGH 78578


text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: K. pneumoniae isolate


text: University Hospital Marques de Valdecilla

text: public

text: klebsiella pneumoniae


text: Jilin University

text: public

tag: Namespace:Jilin University

text: mallard

text: Anas platyrhynchos

text: Anas platyrhynchos

text: spleen of SPF ducks


text: Jilin University

text: public

text: mallard

text: Anas platyrhynchos

text: Anas platyrhynchos

text: spleen of AIV-infected ducks


text: Jilin University

text: public

text: mallard

text: Anas platyrhynchos

text: Anas platyrhynchos

text: thymus of SPF ducks


text: Jilin University

text: public

text: mallard

text: Anas platyrhynchos

text: Anas platyrhynchos

text: thymus of AIV-infected ducks


text: Jilin University

text: public

text: mallard

text: Anas platyrhynchos

text: Anas platyrhynchos

text: bursa of Fabricius of SPF ducks


text: Jilin University

text: public

text: mallard

text: Anas platyrhynchos

text: Anas platyrhynchos

text: bursa of Fabricius of AIV-infected ducks


text: Jilin University

text: public

text: chicken

text: Gallus gallus

text: Gallus gallus

text: spleen of SPF chickens


text: Jilin University

text: public

text: chicken

text: Gallus gallus

text: Gallus gallus

text: spleen of AIV-infected chickens


text: Jilin University

text: public

text: chicken

text: Gallus gallus

text: Gallus gallus

text: thymus of SPF chickens


text: Jilin University

text: public

text: chicken

text: Gallus gallus

text: Gallus gallus

text: thymus of AIV-infected chickens


text: Jilin University

text: public

text: chicken

text: Gallus gallus

text: Gallus gallus

text: bursa of Fabricius of SPF chickens


text: Jilin University

text: public

text: chicken

text: Gallus gallus

text: Gallus gallus

text: bursa of Fabricius of AIV-infected chickens


text: Universidad de Leon

text: public

tag: Namespace:Universidad de Leon

text: sheep

text: Rna-Seq sheep skin

text: Ovis aries

text: Ovis aries

text: sheep skin


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, input 1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, input 1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, input 1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K56ac_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K56ac_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K56ac_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3_2, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3_2, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3_2, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K27me3_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K27me3_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K27me3_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K4me3_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K4me3_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K4me3_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K56ac_2, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K56ac_2, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K56ac_2, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, input 2, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, input 2, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, input 2, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K4me2_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K4me2_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K4me2_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K27me1_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K27me1_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K27me1_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K27me2_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K27me2_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K27me2_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K36me3_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K36me3_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K36me3_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K9me2_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K9me2_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K9me2_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K9me3_1, replicate 1

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K9me3_1, replicate 2

text: Hordeum vulgare

text: Hordeum vulgare


text: JHI

text: public

text: barley

text: ChIP-Seq sample of barley cultivar Morex, H3K9me3_1, replicate 3

text: Hordeum vulgare

text: Hordeum vulgare


text: BGI

text: public

characteristic: anonymized name

text: lymphocyte

characteristic: cell type

text: human

text: DNA extracted from the cell line generated from the first asian genome sequenced.

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: YH cell line DNA


characteristic: ENA-CHECKLIST

text: BABRAHAM INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:BABRAHAM INSTITUTE

text: human

text: Homo sapiens

text: Homo sapiens

text: Growing Rep 1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BABRAHAM INSTITUTE

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Growing Rep 2


text: BABRAHAM INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: human

text: Homo sapiens

text: Homo sapiens

text: Senescent Rep 1


text: BABRAHAM INSTITUTE

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Senescent Rep 2


text: public

tag: Namespace:NANYANG TECHNOLOGICAL UNIVERSITY, SINGAPORE

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: Culture-adapted Cambodian field isolates

characteristic: title


text: NANYANG TECHNOLOGICAL UNIVERSITY, SINGAPORE

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: SLU-GBC

text: public

text: Treponema phagedenis

text: Treponema phagedenis

characteristic: strain


text: National Institute for Medical Research

text: public

tag: Namespace:National Institute for Medical Research

text: human

text: Homo sapiens

text: Homo sapiens

text: Sputum


text: USMHRP,WRAIR

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Hikmet Budak

text: public

tag: Namespace:Hikmet Budak

text: Triticum dicoccoides 5B chromosome

characteristic: description

text: Triticum dicoccoides

text: Triticum dicoccoides


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Triticum dicoccoides


text: THE SAINSBURY LABORATORY

text: public

tag: Namespace:THE SAINSBURY LABORATORY

text: Diane Saunders, Kentaro Yoshida

characteristic: collected by

text: RNA-Seq of Hymenoscyphus fraxineus isolated from Ashwellthorpe wood, Norfolk, England

text: England

characteristic: geographic location (country and/or sea)

text: Fraxinus excelsior

characteristic: host

text: branch cross section, pith material

characteristic: isolation source

characteristic: lat lon

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Ashwellthorpe (AT1) RNA-seq reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: THE SAINSBURY LABORATORY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Diane Saunders, Kentaro Yoshida

text: RNA-Seq of another strain of Hymenoscyphus fraxineus isolated from Ashwellthorpe wood, Norfolk, England

text: England

text: Fraxinus excelsior

text: branch cross section, pith material

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Ashwellthorpe (AT2) RNA-seq reads


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE SAINSBURY LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Diane Saunders, Kentaro Yoshida

text: RNA-Seq of a strain of Hymenoscyphus fraxineus isolated from Upton Broad and Marshes, Norfolk, England

text: England

text: Fraxinus excelsior

text: branch cross section, pith material

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Upton broad and Marshes (UB1) RNA-seq reads


T. dicoccoides 5B run3

text: Hikmet Budak

text: public

characteristic: SRA accession

text: T. dicoccoides 5B run3

characteristic: Submitter Id

text: Triticum dicoccoides 5B

text: Triticum dicoccoides

characteristic: organism

text: Triticum dicoccoides


Tdicoccoides 5Brun1

text: Hikmet Budak

text: public

text: Tdicoccoides 5Brun1

text: Triticum dicoccoides 5B

characteristic: description

text: Triticum dicoccoides

text: Triticum dicoccoides

characteristic: title


text: PEKING UNIVERSITY

text: public

tag: Namespace:PEKING UNIVERSITY

text: human

characteristic: common name

text: hepatocellular carcinomas A1 region

text: Homo sapiens

text: Homo sapiens

text: Male

characteristic: sex


text: PEKING UNIVERSITY

text: public

text: human

text: hepatocellular carcinomas A2 region

text: Homo sapiens

text: Homo sapiens

text: Male


text: PEKING UNIVERSITY

text: public

text: human

text: hepatocellular carcinomas A3 region

text: Homo sapiens

text: Homo sapiens

text: Male


text: PEKING UNIVERSITY

text: public

text: human

text: hepatocellular carcinomas B1 region

text: Homo sapiens

text: Homo sapiens

text: Male


text: PEKING UNIVERSITY

text: public

text: human

text: hepatocellular carcinomas B2 region

text: Homo sapiens

text: Homo sapiens

text: Male


text: PEKING UNIVERSITY

text: public

text: human

text: hepatocellular carcinomas B3 region

text: Homo sapiens

text: Homo sapiens

text: Male


text: PEKING UNIVERSITY

text: public

text: human

text: intrahepatic cholangiocarcinoma C1 region

text: Homo sapiens

text: Homo sapiens

text: Male


text: PEKING UNIVERSITY

text: public

text: human

text: intrahepatic cholangiocarcinoma C2 region

text: Homo sapiens

text: Homo sapiens

text: Male


text: PEKING UNIVERSITY

text: public

text: human

text: intrahepatic cholangiocarcinoma C3 region

text: Homo sapiens

text: Homo sapiens

text: Male


text: PEKING UNIVERSITY

text: public

text: human

text: Metastasis 1

text: Homo sapiens

text: Homo sapiens

text: Male


text: PEKING UNIVERSITY

text: public

text: human

text: Metastasis 2

text: Homo sapiens

text: Homo sapiens

text: Male


TIS

text: PEKING UNIVERSITY

text: public

text: TIS

text: human

text: cirrhotic liver

text: Homo sapiens

text: Homo sapiens

text: Male

text: TIS


blood

text: PEKING UNIVERSITY

text: public

text: blood

text: human

text: blood

text: Homo sapiens

text: Homo sapiens

text: Male

text: blood


text: public

tag: Namespace:Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

text: ArrayExpress

characteristic: broker name

text: basal 5 millimeter of the fourth leaf was sampled for RNA extraction Protocols: The basal 5 millimeter of the fourth leaf was sampled for RNA extraction harvested two days after its appearance from the surrounding older leaves. Plants were grown in the growth chamber under controlled growth conditions (24oC, 55% relative humidity, 170 mmol m-2 s-1 photosynthetically active radiation at plant level in a 16-h/8-h day/night cycle). Total RNA was extracted using TriZol. Library preparation was done using the TruSeq RNA Sample Preparation Kit v2 (Illumina). In brief, starting from total RNA the mRNA is purified using polyA selection. Following chemically fragmentation the mRNA is converted into single-stranded cDNA using random hexamer priming. Next, double-stranded cDNA is generated and adapters are ligated.

text: two days after appearance of fourth leaf

characteristic: developmental stage

text: Zea mays

text: Zea mays

text: fourth leaf

characteristic: organism part

text: Zea mays

characteristic: strain


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Zea mays

text: Zea mays

text: fourth leaf

text: Zea mays


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

tag: Namespace:Institute of Microbiology, Department of Biology, ETH Zurich

text: ArrayExpress

text: Protocols: Bacillus subtilis 168 and Escherichia coli Nissle 1917 were plated from frozen stocks on YMG plates (0.4% yeast extract, 1% malt extract, 50 mM glucose and 1.5% agar) and grown for 18 h at 37C. Single colonies were inoculated in 2.5 ml YMG (0.4% yeast extract, 1% malt extract, 50 mM glucose) broth and grown to stationary phase at 37C under constant shaking. Bacteria were then washed twice in sterile-filtered PBS (135 mM NaCl, 2.5 mM KCl, 10 mM Na2HPO4 and 17.5 mM KH2PO4; pH 7.4) and their OD600 was adjusted with PBS to 0.0005 before use. The fungivorous nematodes Aphelenchus avenae (a gift from Richard Sikora at the University of Bonn) and Bursaphelenchus willibaldi (kindly provided by Dr. Ute Schönfeldt, Zossen, Germany) were replicated at 20C on Agaricus bisporus (Hawlik Euro-Pilzbrut GmbH) or Botrytis cinerea grown on PDA plates (Difco), respectively, and harvested by the Baermann funnel method. Bacterivorous Caenorhabditis elegans N2 was grown on NGM plates (51 mM NaCl, 2.5 g/L bacteriological peptone, 13 mM cholesterol and 1.7% agar) seeded with E. coli OP50 and harvested with PBS. After harvest, all nematodes were transferred to agar plates supplemented with 200 ug/mL G418, 50 ug/mL Nystatin and 100 ug/mL Ampicillin, and incubated for 48 h to eliminate all the residual bacteria or fungi. Before use, nematodes were suspended and washed twice in sterile-filtered PBS and adjusted to a density of 2500 worms/mL C. cinerea monokaryotic Okayama7 (O7) or dikaryotic A43mutB43mut (AB) mycelia were grown on 30 mL YMG agar plates covered with sterile cellophane discs at 37C in the dark for 96 h or 72 h, respectively. One of the following organisms was applied in 200 uL sterile-filtered PBS on the mycelium and incubated for 72 h at 24C in biological triplicates: (I) Approx. 500 mixed-stage A. avenae; (II) Approx. 500 mixed-stage B. willibaldi (O7 only); (III) Approx. 500 mixed-stage C. elegans (O7 only); (IV) OD600: 0.0005 B. subtilis 168 (O7 only) or (V) OD600: 0.0005 E. coli Nissle 1917 (O7 only). To mimic the tissue damage of the hyphae by the fungivorous nematodes, three cellophane-covered YMG plates on which C. cinerea O7 had grown for 96 h were cut with a sterile scalpel every 24 h during 72 h. As a negative control, 200 ul sterile-filtered PBS was added to three cellophane-covered YMG plates on which C. cinerea O7 or AB had grown for 96 h or 72 h, respectively, in the dark at 37C. Mycelia were harvested and flash frozen using liquid nitrogen in individual tubes and stored at -80C. Mycelia were lyophilized in a VirTis Freezemobile for 18 h. 20 mg/replicate/treatment lyophilized tissue was lysed in three FastPrep FP120 homogenization steps of 45 s at 4.5, 5.5 and 6.5 m/s in the presence of 250 mg 0.5 mm glass beads, cooling the samples for 5 min on ice between the steps. RNA was extracted using 1 mL Qiazol (Qiagen) and 0.2 mL chloroform (ReagentPlus, Sigma-Aldrich). The mixture was centrifuged at 12000 xg for 15 min at 4C and RNA from the upper aqueous phase was washed in-column using the RNeasy Lipid Tissue Mini Kit (Qiagen) and eluted in 60 uL RNase-free water. Concentration and quality of the purified RNA were determined with a Qubit (1.0) fluorometer (Life Technologies) and a Bioanalyzer 2100 (Agilent), respectively. Samples with a 260/280 nm ratio of 1.8-2.1 and a 28S/18S ratio of 1.5-2 were used for library construction. TruSeq Stranded mRNA Sample Prep Kit (Illumina) was used to construct expression libraries (three biological replicates per treatment). Briefly, total RNA (1 μg) from each biological replicate was poly(A)-enriched and then reverse-transcribed into double-stranded cDNA in the presence of Actinomycin during first-strand synthesis. Double-stranded cDNA was fragmented, end-repaired and adenylated before being ligated to TruSeq adapters and selectively enriched by PCR. Concentration and quality of the enriched libraries were assessed using Qubit (1.0) fluorometer and LabChip GX (PerkinElmer), showing an average fragment size of 260 bp. Libraries were normalized to 10 nM with 10 mM Tris-HCl pH 8.5 supplemented with 0.1% Tween 20. In addition, TruSeq PE Cluster Kit v3-cBot-HS (Illumina) was used to generate clusters from 10 pM pooled normalized libraries.

text: Coprinopsis cinerea

text: Coprinopsis cinerea

text: Vegetative mycelium

text: Coprinopsis cinerea


text: Institute of Microbiology, Department of Biology, ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ArrayExpress

text: Coprinopsis cinerea

text: Coprinopsis cinerea

text: Vegetative mycelium

text: Coprinopsis cinerea


text: BIOZENTRUM, UNIVERSITY OF BASEL

text: public

tag: Namespace:BIOZENTRUM, UNIVERSITY OF BASEL

characteristic: Submitter Id

text: Capnocytophaga canimorsus

characteristic: organism

text: Capnocytophaga canimorsus

text: Cc11 Draft Genome


text: BIOZENTRUM, UNIVERSITY OF BASEL

text: public

text: Capnocytophaga canimorsus

text: Capnocytophaga canimorsus

text: Cc2 Draft Genome

characteristic: title


text: BIOZENTRUM, UNIVERSITY OF BASEL

text: public

text: Capnocytophaga canimorsus

text: Capnocytophaga canimorsus

text: CcD38 Draft Genome


text: BIOZENTRUM, UNIVERSITY OF BASEL

text: public

text: Capnocytophaga canimorsus

text: Capnocytophaga canimorsus

text: Cc12 Draft Genome


text: BIOZENTRUM, UNIVERSITY OF BASEL

text: public

text: Capnocytophaga canimorsus

text: Capnocytophaga canimorsus

text: CcD93 Draft Genome


text: BIOZENTRUM, UNIVERSITY OF BASEL

text: public

text: Capnocytophaga canimorsus

text: Capnocytophaga canimorsus

text: CcD95 Draft Genome


text: BIOZENTRUM, UNIVERSITY OF BASEL

text: public

text: Capnocytophaga cynodegmi

text: Capnocytophaga cynodegmi

text: Ccy74 Draft Genome


text: BIOZENTRUM, UNIVERSITY OF BASEL

text: public

text: Capnocytophaga cynodegmi

text: Capnocytophaga cynodegmi

text: Ccyn2B Draft Genome


text: BIOZENTRUM, UNIVERSITY OF BASEL

text: public

text: Capnocytophaga cynodegmi

text: Capnocytophaga cynodegmi

text: Ccyn_ATCC49044 Draft Genome


text: UNIPAMPA

text: public

text: Soil from Sao Gabriel 1

characteristic: description

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Sao Gabriel 2

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Sao Gabriel 3

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Santa Maria 4

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Santa Maria 5

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Santa Maria 6

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Sao Gabriel 7

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Sao Gabriel 8

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Sao Gabriel 9

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Santa Maria 10

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Santa Maria 11

text: soil metagenome

text: soil metagenome


text: UNIPAMPA

text: public

text: Soil from Santa Maria 12

text: soil metagenome

text: soil metagenome


text: public

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: swab

characteristic: isolation source host associated

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Germany

text: Homo sapiens

text: Yes

text: trachealsecretion

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: Germany

text: Homo sapiens

text: Yes

text: Blood

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: External Id

text: public

characteristic: INSDC status

text: Germany

text: Homo sapiens

text: Yes

text: Escherichia coli

text: Escherichia coli


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Germany

text: Enterococcus faecium

text: Enterococcus faecium


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

text: Homo sapiens

text: Yes

text: swab nose

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

text: Germany

text: Homo sapiens

text: Yes

text: stool

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

characteristic: title


text: public

characteristic: collection date

text: Germany

text: Homo sapiens

text: Yes

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Yes

text: blood

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

text: Germany

text: Homo sapiens

characteristic: host

text: Yes

text: BAL

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: STATENS SERUM INSTITUT

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: K. pneumoniae isolate


E-MTAB-3200:Sample 15

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 15

tag: Namespace:Institut Pasteur

text: ArrayExpress

characteristic: broker name

text: Protocols: and sequenced on the Illumina GAIIX or HiSeq 2000. 1. 15-40 ml of bacterial culture were rapidly centrifuged, the pellet was frozen in dry ice/ethanol and stored at -80 degree centigrade. 2. The pellet was resuspended in 400 microliter of resuspension buffer and the suspension was quickly transfered into a screw cap 2 ml microtube containing 500 microliter acid phenol and 0.4 g of glass beads. 3. Bacterial cell walls were broken using 2 cycles in FastPrep (speed: 6, time: 30s) at 4 degree centigrade, separated by 1 min and centrifuged during 5 min at 13,000 g at 4 degree centigrade. 4. The upper layer was transferred to a new collection tube and 1 ml trizol was added and carefully mixed by repeated pipetting. After a 5 min-incubation, 100 microliter acid phenol:chloroform:isoamyl alcohol (25:24:1 volume ratio) were added and carefully mixed carefully by repeated pipetting. After a 3 min-long incubation, the sample was centrifuged 5 min at 13,000 g at 4 degree centigrade. 5. The upper layer was transferred to a new collection tube, and 200 microliter chloroform:isoamyl alcohol were added. After mixing the sample was incubated at room temperature for 5 min and centrifuged at 13,000 g during 5 min at 4 degree centigrade. 6. The upper layer was transferred into a new collection tube and the RNA was precipitated by adding 500 microliter isopropanol. The pellet was rinsed with 1 ml 70% ethanol, dried and resuspended in 50 microliter RNase-free water, with a 10 min-incubation at 55 degree centigrade to help for pellet dissolution. 7. Traces of RNA were removed by using Life Technologies prime Turbo DNA-free kit according to manufacturer primes instructions

characteristic: description

text: 5' end sequencing

characteristic: fraction

text: delta-ciaRH

characteristic: genotype

text: late exponential phase,TH medium

characteristic: growth condition

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: strain

text: Sample 15


E-MTAB-3200:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institut Pasteur

characteristic: INSDC last update

text: public

text: E-MTAB-3200:Sample 18

text: ArrayExpress

text: Protocols: and sequenced on the Illumina GAIIX or HiSeq 2000. After RNA extraction and removal of residual DNA with TURBO DNAse (Ambion), RNA integrity was verified with the Agilent Bioanalyzer 2100. Only RNA preparations with RNA Integrity Numbers greater than 9 were kept for analyses. mRNA enrichment was performed with the MICROBExpress Kit (Ambion). Depletion of 16S and 23S ribosomal RNAs was confirmed with the Agilent Bioanalyzer 2100. Strand-specific RNA-seq libraries were generated using primer ligation method starting with the equivalent of 1 microgram total RNA Adapters and primers were from the TruSeq Small RNA Prep kit (Illumina). Samples were incubated with 5 U of TAP for 1 h at 37 degree centigrade. After chloroform/acid phenol (1/1) extraction and ethanol precipitation, the RNAs were fragmented by using the RNA Fragmentation Reagent kit (Ambion) and an incubation time of 5 min at 70 degree centigrade. Fragmented RNAs were purified with the RNeasy MinElute Cleanup (Qiagen) columns and dephosphorylated by treating with 5 U of antarctic Phosphatase (Biolabs) for 30 min at 37 degree centigrade followed by 5 min at 65 degree centigrade. RNA were thereafter rephosphorylated with 20 U T4 polynucleotide kinase (Biolabs) 60 min at 37 degree centigrade and purified through RNeasy MinElute Cleanup (Qiagen) columns and 14 microliter RNase-free water as elution reagent. 6 microliter of the eluted RNA were further used for ligation to 1 microliter RNA 3 primeadapter in a final volume of 10 microliter in the presence of 200 U Truncated T4 RNA Ligase 2 (Biolabs). After 1h incubation at 28 degree centigrade, the reaction was stopped with 1 microliter of stop solution (Illumina) and incubated for 15 min at 28 degree centigrade. RNA ligated with 3 prime adapter was ligated on its 5 prime end using 1.1 microliter 5 prime RNA adapter in the presence of ATP 1 mM and 11 U T4 RNA ligase (Biolabs) and incubated at 28 degree centigrade for 1 h. Reverse transcription of the double-ligated RNA was performed using Superscript II Reverse transcriptase and 1 microliter RNA reverse transcription primer from 1 h at 50 degree centigrade. The whole sample was amplified in a 50 microliter PCR reaction in the presence of Phusion Taq polymerase, 2 microliter of RP1 PCR primer and 2 microliter of indexed PCR primer with the following thermocycling conditions: 30 sec at 98 degree centigrade, 14 cycles of 98 degree centigrade for 10 sec, 60 degree centigrade for 30 sec, 72 degree centigrade for 15 sec followed by 10 min at 72 degree centigrade. Finally, the PCR products were purified twice with 1.3 volumes of AMPure beads (Agencourt), DNA concentration was measured using Qubit quantification and size of the PCR products was estimated on DNA 1000 Bioanalyzer chip (Agilent) before sequencing using the Illumina HiSeq 2000 machine. and sequenced on the Illumina GAIIX or HiSeq 2000.

text: Whole-transcript sequencing

text: wild-type

text: mid-exponential phase, TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 18


E-MTAB-3200:Sample 16

text: Institut Pasteur

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3200:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: 5' end sequencing

text: delta-ciaRH

text: late exponential phase,TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 16


E-MTAB-3200:Sample 6

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 6

text: ArrayExpress

text: 5' end sequencing

text: wild-type

text: mid-exponential phase, TH medium

text: Streptococcus agalactiae

characteristic: organism

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 6

characteristic: title


E-MTAB-3200:Sample 3

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 3

text: ArrayExpress

characteristic: broker name

characteristic: description

text: 5' end sequencing

text: wild-type

text: late exponential phase in TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 3


E-MTAB-3200:Sample 2

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 2

text: ArrayExpress

text: 5' end sequencing

characteristic: fraction

text: wild-type

characteristic: genotype

text: pool of RNAs prepared at mid-exponential and stationary growth phases in rich culture medium (TH) and at the beginning of stationary growth phase in a poor culture medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 2


E-MTAB-3200:Sample 21

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 21

text: ArrayExpress

text: Whole-transcript sequencing

text: wild-type

text: mid-exponential phase, TH medium+ 20 min TH medium pH 5.2

characteristic: growth condition

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: strain

text: Sample 21


E-MTAB-3200:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 19

text: ArrayExpress

text: Whole-transcript sequencing

text: wild-type

text: mid-exponential phase, TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 19


E-MTAB-3200:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 1

text: ArrayExpress

text: 5' end sequencing

text: wild-type

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 1


E-MTAB-3200:Sample 10

text: Institut Pasteur

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-3200:Sample 10

text: ArrayExpress

text: 5' end sequencing

text: delta-covRS

text: mid-exponential phase, TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 10


E-MTAB-3200:Sample 4

text: Institut Pasteur

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-3200:Sample 4

text: ArrayExpress

text: 5' end sequencing

text: wild-type

text: late exponential phase in TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 4


E-MTAB-3200:Sample 13

text: Institut Pasteur

text: public

characteristic: SRA accession

text: E-MTAB-3200:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: 5' end sequencing

text: delta-relRS

text: mid-exponential phase, TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 13


E-MTAB-3200:Sample 22

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 22

text: ArrayExpress

text: Whole-transcript sequencing

text: wild-type

text: Streptococcus agalactiae

characteristic: organism

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 22

characteristic: title


E-MTAB-3200:Sample 5

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 5

text: ArrayExpress

characteristic: broker name

characteristic: description

text: 5' end sequencing

text: wild-type

text: mid-exponential phase, TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 5


E-MTAB-3200:Sample 12

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 12

text: ArrayExpress

text: 5' end sequencing

characteristic: fraction

text: delta-covRS

characteristic: genotype

text: late exponential phase,TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 12


E-MTAB-3200:Sample 23

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 23

text: ArrayExpress

text: Whole-transcript sequencing

text: wild-type

characteristic: growth condition

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: strain

text: Sample 23


E-MTAB-3200:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 7

text: ArrayExpress

text: 5' end sequencing

text: wild-type

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 7


E-MTAB-3200:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 9

text: ArrayExpress

text: 5' end sequencing

text: delta-covRS

text: mid-exponential phase, TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 9


E-MTAB-3200:Sample 8

text: Institut Pasteur

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-3200:Sample 8

text: ArrayExpress

text: 5' end sequencing

text: wild-type

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 8


E-MTAB-3200:Sample 11

text: Institut Pasteur

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-3200:Sample 11

text: ArrayExpress

text: 5' end sequencing

text: delta-covRS

text: late exponential phase,TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 11


E-MTAB-3200:Sample 17

text: Institut Pasteur

text: public

characteristic: SRA accession

text: E-MTAB-3200:Sample 17

characteristic: Submitter Id

text: ArrayExpress

text: 5' end sequencing

text: delta-ciaRH

text: late exponential phase,TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 17


E-MTAB-3200:Sample 20

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 20

text: ArrayExpress

text: Whole-transcript sequencing

text: wild-type

text: mid-exponential phase, TH medium

text: Streptococcus agalactiae

characteristic: organism

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 20

characteristic: title


E-MTAB-3200:Sample 14

text: Institut Pasteur

text: public

text: E-MTAB-3200:Sample 14

text: ArrayExpress

characteristic: broker name

characteristic: description

text: 5' end sequencing

text: delta-relRS

text: mid-exponential phase, TH medium

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 14


text: public

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Germany

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STATENS SERUM INSTITUT

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate


text: STATENS SERUM INSTITUT

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella isolate


characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Germany

text: Homo sapiens

text: Yes

text: trachealsecretion

characteristic: isolation source host associated

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

text: Homo sapiens

text: Yes

text: swab tongue

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa


text: public

text: Germany

text: Homo sapiens

text: Yes

text: stool

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: title


text: public

characteristic: collection date

text: Germany

text: Homo sapiens

text: Yes

text: blood

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Yes

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: STATENS SERUM INSTITUT

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate


E-MTAB-3208:Sample 2

text: public

text: E-MTAB-3208:Sample 2

tag: Namespace:Wadsworth Center, NY State Dept of Health

text: ArrayExpress

characteristic: broker name

text: Protocols: ChIP was performed by standard methods; see Paul et al (2015) Mol Cell Biol 35: 331 for full description Exponentially growing cultures growing at 25 C were adjusted with prewarmed medium to 37 C and incubated one hour before harvesting for ChIP. Following cross-linking and immunoprecipitation, DNA was isolated as described in Paul et al. (2015) Mol Cell Biol 35: 331 Bar-coded libraries were prepared as described in Paul et al (2015) Mol Cell Biol 35: 331

characteristic: description

text: wild type genotype

characteristic: genotype

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Sample 2


E-MTAB-3208:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wadsworth Center, NY State Dept of Health

text: public

text: E-MTAB-3208:Sample 4

text: ArrayExpress

text: abf1-101 ts

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Sample 4


E-MTAB-3208:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3208:Sample 5

text: ArrayExpress

text: abf1-101 ts

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Sample 5


E-MTAB-3208:Sample 1

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-3208:Sample 1

text: ArrayExpress

text: wild type genotype

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Sample 1


E-MTAB-3208:Sample 6

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-3208:Sample 6

text: ArrayExpress

text: abf1-101 ts

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Sample 6


E-MTAB-3208:Sample 3

text: public

characteristic: SRA accession

text: E-MTAB-3208:Sample 3

text: ArrayExpress

text: wild type genotype

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: Sample 3


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

tag: Namespace:MARINE BIOLOGICAL ASSOCIATION OF THE UK

characteristic: Submitter Id

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 6 January 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

characteristic: organism

text: Deformed wing virus

text: Swindon Honey bee Hive 6 April 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 6 May 2013

characteristic: title


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 6 October 2012


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 17 January 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 17 April 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 17 May 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 17 October 2012


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 19 January 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 19 April 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 19 May 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Honey bee Hive 19 October 2012


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Varroa mite Hive 6 January April May 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Varroa mite Hive 6 October 2012


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Varroa mite Hive 17 January April May 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Varroa mite Hive 17 October 2012


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Varroa mite Hive 19 January April May 2013


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Swindon Varroa mite Hive 19 October 2012


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Honey bee from Oahu, Hawaii


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Varroa mite from Oahu, Hawaii


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Honey bee from Big Island, Hawaii


text: MARINE BIOLOGICAL ASSOCIATION OF THE UK

text: public

text: Deformed wing virus

text: Deformed wing virus

text: Varroa mite from Big Island, Hawaii


AT1_RNA-seq BWA mem

text: THE SAINSBURY LABORATORY

text: public

text: AT1_RNA-seq BWA mem

text: Diane Saunders, Kentaro Yoshida

characteristic: collected by

text: RNA-Seq of Hymenoscyphus fraxineus isolated from Ashwellthorpe wood, Norfolk, England. Sequences from AT1 are aligned to Kenninghall wood (KW1) version 1 contigs (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_contigs.fa) using BWA mem v 0.7.4.

text: England

text: Fraxinus excelsior

characteristic: host

text: branch cross section, pith material

characteristic: isolation source

characteristic: lat lon

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Ashwellthorpe (AT1) RNA-seq reads alignment against v1 KW1 contigs


AT1_RNA-seq1 adjusted BWA mem

text: THE SAINSBURY LABORATORY

text: public

text: AT1_RNA-seq1 adjusted BWA mem

text: Diane Saunders, Kentaro Yoshida

text: RNA-Seq of Hymenoscyphus fraxineus isolated from Ashwellthorpe wood, Norfolk, England. Sequences from AT1 are aligned to Kenninghall wood (KW1) version 1 contigs (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_contigs.fa) using BWA mem v 0.7.4 with following options -A 5 -B 3 -O 5 -E 2.

characteristic: description

text: England

characteristic: geographic location (country and/or sea)

text: Fraxinus excelsior

text: branch cross section, pith material

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Ashwellthorpe (AT1) RNA-seq reads alignment against v1 KW1 contigs using adjusted BWA parameters


M.H

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universite de Poitiers

text: public

text: M.H

tag: Namespace:Universite de Poitiers

text: common pillbug

characteristic: common name

text: France

text: Armadillidium vulgare

text: Laboratory

text: Armadillidium vulgare

text: Armadillidium vulgare

text: Haemolymph

characteristic: tissue type

text: M.H


AT2_RNA-seq BWA mem

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE SAINSBURY LABORATORY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: AT2_RNA-seq BWA mem

text: Diane Saunders, Kentaro Yoshida

text: RNA-Seq of Hymenoscyphus fraxineus isolated from Ashwellthorpe wood, Norfolk, England. Sequences from AT2 are aligned to Kenninghall wood (KW1) version 1 contigs (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_contigs.fa) using BWA mem v 0.7.4.

text: England

text: Fraxinus excelsior

text: branch cross section, pith material

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Ashwellthorpe (AT2) RNA-seq reads alignment against v1 KW1 contigs


AT2_RNA-seq  adjusted BWA mem

text: THE SAINSBURY LABORATORY

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AT2_RNA-seq adjusted BWA mem

characteristic: Submitter Id

text: Diane Saunders, Kentaro Yoshida

text: RNA-Seq of Hymenoscyphus fraxineus isolated from Ashwellthorpe wood, Norfolk, England. Sequences from AT2 are aligned to Kenninghall wood (KW1) version 1 contigs (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_contigs.fa) using BWA mem v 0.7.4 with following options -A 5 -B 3 -O 5 -E 2.

text: England

text: Fraxinus excelsior

text: branch cross section, pith material

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Ashwellthorpe (AT2) RNA-seq reads alignment against v1 KW1 contigs using adjusted BWA parameters


UB1_RNA-seq BWA mem

text: THE SAINSBURY LABORATORY

text: public

text: UB1_RNA-seq BWA mem

text: Diane Saunders, Kentaro Yoshida

characteristic: collected by

text: RNA-Seq of a strain of Hymenoscyphus fraxineus isolated from Upton Broad and Marshes, Norfolk, England. Sequences from UB1 are aligned to Kenninghall wood (KW1) version 1 contigs (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_contigs.fa) using BWA mem v 0.7.4.

text: England

text: Fraxinus excelsior

characteristic: host

text: branch cross section, pith material

text: Hymenoscyphus fraxineus

characteristic: organism

text: Hymenoscyphus fraxineus

text: Upton broad and Marshes (UB1) RNA-seq reads alignment against v1 KW1 contigs

characteristic: title


UB1_RNA-seq adjusted BWA mem

text: THE SAINSBURY LABORATORY

text: public

text: UB1_RNA-seq adjusted BWA mem

text: Diane Saunders, Kentaro Yoshida

text: RNA-Seq of a strain of Hymenoscyphus fraxineus isolated from Upton Broad and Marshes, Norfolk, England. Sequences from UB1 are aligned to Kenninghall wood (KW1) version 1 contigs (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_contigs.fa) using BWA mem v 0.7.4 with following options -A 5 -B 3 -O 5 -E 2.

characteristic: description

text: England

characteristic: geographic location (country and/or sea)

text: Fraxinus excelsior

text: branch cross section, pith material

characteristic: isolation source

characteristic: lat lon

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Upton broad and Marshes (UB1) RNA-seq reads alignment against v1 KW1 contigs using adjusted BWA parameters


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GeoBio-CenterLMU

text: public

text: Magellania venosa

text: Magellania venosa

text: Magellania venosa transcriptome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate


characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: metagenome

text: metagenome


text: DISTAL

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: pig

characteristic: common name

text: Equimolar genomic pool of 50 ILW pigs with extreme positive value for BFT.

text: Sus scrofa

text: Sus scrofa

text: ILW Genomic Pool


text: DISTAL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: pig

text: Equimolar genomic pool of 50 ILW pigs with extreme negative value for BFT.

text: Sus scrofa

text: Sus scrofa

text: ILW Genomic Pool


text: TEAGASC

text: public

text: Raw

text: food metagenome

characteristic: organism

text: food metagenome

text: Microbial composition of cow’s milk


text: TEAGASC

text: public

text: Pasteurised

text: food metagenome

text: food metagenome

text: Microbial composition of cow’s milk

characteristic: title


text: NIOB

text: public

text: human

text: Clonal human colon organoid culture, KRAS and APC mutated

characteristic: description

text: Homo sapiens

text: Homo sapiens


text: NIOB

text: public

text: human

text: Clonal human intestinal organoid culture, KRAS, APC and P53 mutated

text: Homo sapiens

text: Homo sapiens


text: NIOB

text: public

text: human

text: Clonal human colon organoid culture, KRAS, APC and P53 mutated

text: Homo sapiens

text: Homo sapiens


text: NIOB

text: public

text: human

text: Clonal human intestinal organoid culture, KRAS, APC, P53 and SMAD5 mutated

text: Homo sapiens

text: Homo sapiens


text: NIOB

text: public

text: human

text: Clonal human colon organoid culture, KRAS, APC, P53 and SMAD4 mutated

text: Homo sapiens

text: Homo sapiens


text: NIOB

text: public

text: human

text: Clonal human colon organoid culture, KRAS mutated

text: Homo sapiens

text: Homo sapiens

text: KRAS


text: LIV

text: public

text: Brenneria Goodwinii sample 22

text: Brenneria goodwinii

text: Brenneria goodwinii

characteristic: strain

text: sample 22


text: YORK

text: public

text: Rhizobium leguminosarum

text: Rhizobium leguminosarum

text: Rhizobium


text: YORK

text: public

text: Rhizobium fabae

text: Rhizobium fabae

text: Rhizobium


text: YORK

text: public

text: Rhizobium phaseoli

text: Rhizobium phaseoli

text: Rhizobium


text: YORK

text: public

text: Rhizobium pisi

text: Rhizobium pisi

text: Rhizobium


text: MMRI

text: public

text: human

text: Patient #8 tumor whole genome sequencing

text: Homo sapiens

text: Homo sapiens


text: MMRI

text: public

text: human

text: Patient #8 blood whole genome sequencing

text: Homo sapiens

text: Homo sapiens


text: STATENS SERUM INSTITUT

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate


name: fraction P4, starvation, not poly (A) enriched

text: Research Center for Infectious Diseases

text: public

tag: Namespace:Research Center for Infectious Diseases

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei


name: Total, starvation, poly (A) enriched, replicate 1

text: Research Center for Infectious Diseases

text: public

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei


name: fraction P4, starvation, poly (A) enriched, replicate 1

text: Research Center for Infectious Diseases

text: public

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei


IP: CTRL

text: Oslo Genomics Core Facility

text: public

text: IP: CTRL

tag: Namespace:Oslo Genomics Core Facility

text: baker's yeast

text: IP: control sample untreated.

text: RDKY3615 ubc9::NAT [pSE362-UBC9, HIS3] HIS6-FLAG-SMT3:KAN

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: IP: CTRL untreated


IP: RNAPII 1

text: Oslo Genomics Core Facility

text: public

text: IP: RNAPII 1

text: baker's yeast

text: IP: RNAPII untreated sample

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: IP: RNAPII untreated


IP: RNAPII 2

text: Oslo Genomics Core Facility

text: public

text: IP: RNAPII 2

text: baker's yeast

text: IP: RNAPII sample treated with rapamycin

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: IP: RNAPII treated


IP: RNAPII 3

text: Oslo Genomics Core Facility

text: public

text: IP: RNAPII 3

text: baker's yeast

text: IP: RNAPII untreated sample

text: RDKY3615 ubc9::NAT [pSE362-ubc9-1, HIS3] HIS6-FLAG-SMT3:KAN

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: IP: RNAPII untreated


IP: RNAPII 4

text: Oslo Genomics Core Facility

text: public

text: IP: RNAPII 4

text: baker's yeast

text: IP: RNAPII sample treated with rapanycin

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: IP: RNAPII treated


text: TEAGASC

text: public

text: Timepoint 1, Late, Block 7, External

text: food metagenome

text: food metagenome

text: Temporal and spatial differences in microbial composition during the manufacture of a Continental-type cheese


text: TEAGASC

text: public

text: Timepoint 1, Late, Block 7, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 1, LAte, Block 8, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 1, LAte, Block 8, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 1, Early, Block9,External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 1, Early, Block9,Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint1, Early, Block 10, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint1, Early, Block 10, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 2, Late, BLock7, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint2, Late, Block 7, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 2, Late, Block 8, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 2, Late, Block 8, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 2, Early, Block 9, internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 2, Early, Block 9, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 2, Early, Block 10, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 2, Early, Block 10, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 3, Late, Block 7, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 3, Late, Block 7, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 3, Late, Block 8, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 3, Late, Block 8, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 3, Early, Block 9, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 3, Early, Block 10, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 3, Early, Block 10, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 4, Late, Block 7, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 4, Late, Block 8, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 4, Late, Block 8, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 4, Early, Block 9, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 4, Early, Block 9, External

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 4, Early, Block 10, Internal

text: food metagenome

text: food metagenome


text: TEAGASC

text: public

text: Timepoint 4, Early, Block 10, External

text: food metagenome

text: food metagenome


text: UPMC-CNRS

text: public

text: Bulked DNA of 48 [mut] individuals from independent meiotic events

text: mature parthenosporophyte

characteristic: dev stage

text: CCAP 1310/4 X CCAP 1310/334

characteristic: ecotype

text: Ectocarpus siliculosus

text: Ectocarpus siliculosus

text: male X female

characteristic: sex

text: prostrate filament

characteristic: tissue type

text: segregative population


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STATENS SERUM INSTITUT

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

text: Homo sapiens


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: SRA accession

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: Submitter Id

characteristic: collection date

text: Norway

characteristic: geographic location (country and/or sea)

text: human throat

characteristic: isolation source

text: Streptococcus sanguinis

characteristic: organism

text: Streptococcus sanguinis

text: Streptococcus sanguinis 2908


text: MFPL

text: public

text: baker's yeast

characteristic: common name

text: Hop1 chip in Hop1 del

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: title


characteristic: ENA-CHECKLIST

text: MFPL

text: public

text: baker's yeast

text: Hop1 in rec8 del

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA-FIRST-PUBLIC

text: MFPL

text: public

text: baker's yeast

text: V5_Red1 in rec8 del

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA-LAST-UPDATE

text: MFPL

text: public

text: baker's yeast

text: Whole cell extract of rec8D

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: External Id

text: MFPL

text: public

text: baker's yeast

text: Hop1 in red1D, single end

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: MFPL

characteristic: INSDC center name

text: public

text: baker's yeast

text: Mek1 in WT

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: MFPL

characteristic: INSDC first public

text: public

text: baker's yeast

text: RRec8 in red1D

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: MFPL

characteristic: INSDC last update

text: public

text: baker's yeast

text: Rec8 in WT

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: MFPL

text: public

characteristic: INSDC status

text: baker's yeast

text: Red1 in hop1D

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: MFPL

text: public

characteristic: SRA accession

text: baker's yeast

text: Red1 in hop1Drec8D

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: MFPL

text: public

characteristic: Submitter Id

text: baker's yeast

text: V5 Red1 in WT

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: MFPL

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UNIVERSITY OF HELSINKI

text: public

tag: Namespace:UNIVERSITY OF HELSINKI

text: Finland

text: cold-stored modified atmosphere packaged broiler filet strips with the first signs of spoilage

text: Lactococcus piscium MKFS47

text: Lactococcus piscium MKFS47

characteristic: strain

text: Lactococcus piscium genome


text: Universiteit Antwerpen

text: public

tag: Namespace:Universiteit Antwerpen

text: human

text: Homo sapiens

text: Homo sapiens

text: PNET cell lines: BON-1


text: Universiteit Antwerpen

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: PNET cell lines: QGP-1


text: CENTRE FOR CANCER BIOLOGY

text: public

tag: Namespace:CENTRE FOR CANCER BIOLOGY

text: human

text: To assess whether circRNA production is regulated in EMT, we harvested RNA from immortalised human mammary epithelial (HMLE) cells before and after they had undergone EMT in response to treatment with TGF-β. The TGF-β-treated cells are stably mesenchymal with typical morphology and marker expression and are referred to as mesHMLE cells. RNA from two biological replicates of HMLE and mesHMLE cells as well as two biological replicates of mesHMLE cells with QKI stably knocked down by QKI specific siRNAs was subjected to deep sequencing, using library preparation procedures and bioinformatics pipelines designed to detect circRNAs.

text: Homo sapiens

text: Homo sapiens

text: Harvested RNA from immortalised human mammary epithelial (HMLE) cells before and after they had undergone EMT and after EMT with QKI knocked down by siRNAs


text: UNIBE-IG

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: Hairless stripes in cattle implicate TSR2 in early hair follicle formation


name: Klebsiella pneumoniae subsp. rhinoscleromatis Urmite

text: URMITE

text: public

text: Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884

text: Urmite


text: STATENS SERUM INSTITUT

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate


text: STATENS SERUM INSTITUT

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate


PAO1 wt, replicate 1

text: UNIVERSITY OF OXFORD

text: public

text: PAO1 wt, replicate 1

tag: Namespace:UNIVERSITY OF OXFORD

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Interactions between horizontally acquired genes create a fitness cost in Pseudomonas aeruginosa


PAO1 wt, replicate 2

text: UNIVERSITY OF OXFORD

text: public

text: PAO1 wt, replicate 2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


PAO1 + pNUK73 plasmid, replicate 1

text: UNIVERSITY OF OXFORD

text: public

text: PAO1 + pNUK73 plasmid, replicate 1

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


PAO1 + pNUK73 plasmid, replicate 2

text: UNIVERSITY OF OXFORD

text: public

text: PAO1 + pNUK73 plasmid, replicate 2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


name: PAO1 compensated (helicase mutant) + pNUK73 plasmid, replicate 1

text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


name: PAO1 compensated (helicase mutant) + pNUK73 plasmid, replicate 2

text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


name: PAO1 compensated (kinase mutant) + pNUK73 plasmid, replicate 1

text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


name: PAO1 compensated (kinase mutant) + pNUK73 plasmid, replicate 2

text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


name: PAO1 compensated (helicase mutant), no plasmid, replicate 1

text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


name: PAO1 compensated (helicase mutant), no plasmid, replicate 2

text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


name: PAO1 compensated (kinase mutant), no plasmid, replicate 1

text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


name: PAO1 compensated (kinase mutant), no plasmid, replicate 2

text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

tag: Namespace:University Medical Center Hamburg-Eppendorf

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: engineered heart tissue (EHT)

characteristic: tissue type

text: Sample_1A2_AE Afterload-enhanced EHT #2


text: University Medical Center Hamburg-Eppendorf

text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: engineered heart tissue (EHT)

text: Sample_1A3_AE Afterload-enhanced EHT #4


text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: engineered heart tissue (EHT)

text: Sample_1B1_AE Afterload-enhanced EHT #1


text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: engineered heart tissue (EHT)

text: Sample_1B2_AE Afterload-enhanced EHT #3


text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: engineered heart tissue (EHT)

text: Sample_1C5_ctr Control EHT #3


text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: engineered heart tissue (EHT)

text: Sample_1D1_ctr Control EHT #1