E-MTAB-3376:Sample 4

text: public

characteristic: SRA accession

text: E-MTAB-3376:Sample 4

tag: Namespace:Faculty of Animal Science and Food Engineering - University of Sao Paulo

text: ArrayExpress

text: Protocols: liver samples were collected by biopsy and, immediately frozen in liquid nitrogen and kept in -80°C freezer until RNA extraction RNeasy mini kit (QIAGEN, Crawley, West Sussex, UK) was used in accordance with guidelines supplied by manufacturer to extract total RNA from around 30 mg liver biopsy samples Preparation of libraries were carried out using TruSeq™ RNA Sample Prep Kit in accordance with TruSeq® RNA Sample Preparation v2 Guide (Illumina, USA, 2012, Part # 15026495 Rev. D)

text: high feed efficiency

characteristic: diet

text: Bos indicus

text: Bos indicus

text: liver

characteristic: organism part

text: Bos indicus

text: male

characteristic: sex

text: Sample 4


E-MTAB-3376:Sample 13

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Faculty of Animal Science and Food Engineering - University of Sao Paulo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3376:Sample 13

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: description

text: low feed efficiency

text: Bos indicus

characteristic: organism

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 13

characteristic: title

type: has member


E-MTAB-3376:Sample 5

text: public

characteristic: SRA accession

text: E-MTAB-3376:Sample 5

text: ArrayExpress

text: high feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 5


E-MTAB-3376:Sample 12

text: public

text: E-MTAB-3376:Sample 12

text: ArrayExpress

text: low feed efficiency

characteristic: diet

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 12


E-MTAB-3376:Sample 16

text: public

text: E-MTAB-3376:Sample 16

text: ArrayExpress

text: low feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

characteristic: organism part

text: Bos indicus

text: male

text: Sample 16


E-MTAB-3376:Sample 6

text: public

text: E-MTAB-3376:Sample 6

text: ArrayExpress

text: high feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

characteristic: sex

text: Sample 6


E-MTAB-3376:Sample 3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3376:Sample 3

text: ArrayExpress

text: low feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 3


E-MTAB-3376:Sample 2

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3376:Sample 2

text: ArrayExpress

text: high feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 2


E-MTAB-3376:Sample 7

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3376:Sample 7

text: ArrayExpress

text: high feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 7


E-MTAB-3376:Sample 11

characteristic: External Id

text: public

text: E-MTAB-3376:Sample 11

text: ArrayExpress

text: high feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 11


E-MTAB-3376:Sample 8

characteristic: INSDC center name

text: public

text: E-MTAB-3376:Sample 8

text: ArrayExpress

text: low feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 8


E-MTAB-3376:Sample 9

characteristic: INSDC first public

text: public

text: E-MTAB-3376:Sample 9

text: ArrayExpress

text: high feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 9


E-MTAB-3376:Sample 1

characteristic: INSDC last update

text: public

text: E-MTAB-3376:Sample 1

text: ArrayExpress

text: low feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 1


E-MTAB-3376:Sample 14

text: public

characteristic: INSDC status

text: E-MTAB-3376:Sample 14

text: ArrayExpress

text: low feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 14


E-MTAB-3376:Sample 10

text: public

text: E-MTAB-3376:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: high feed efficiency

text: Bos indicus

text: Bos indicus

text: liver

text: Bos indicus

text: male

text: Sample 10


text: Universidad de Playa Ancha

text: public

tag: Namespace:Universidad de Playa Ancha

text: planktonic microbes

characteristic: bio material

text: 10 August 2011

characteristic: collection date

text: Chile

characteristic: geographic location (country and/or sea)

text: Water

characteristic: isolation source

characteristic: lat lon

text: aquatic metagenome

text: aquatic metagenome

text: 16S rRNA


text: public

characteristic: SRA accession

text: rice

characteristic: common name

text: Transcriptom sequecing of the rice, Josaengheug_chal RNA_seq library at seed development and heading date, using Illumina Hiseq 2000

characteristic: description

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: Rice, Josaengheug_chal seed development and heading date Transcriptom sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: rice

text: Transcriptom sequecing of the rice, Josaengheug_chal RNA_seq library at seed development and heading date + 14days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Josaengheug_chal seed development and heading date + 14days Transcriptom sequencing


Paenibacillus reamassiliensis

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Paenibacillus reamassiliensis

text: Paenibacillus sp. GD6

text: Paenibacillus sp. GD6

characteristic: strain

text: Genome sequence of Paenibacillus reamassiliensis


text: SDSU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Salmonella enterica subsp. enterica serovar Dublin

text: Salmonella enterica serovar Dublin str. SARB12


text: public

text: rice

text: Transcriptom sequecing of the rice, Boseogheug_chal RNA_seq library at seed development and heading date, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Boseogheug_chal seed development and heading date Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Boseogheug_chal RNA_seq library at seed development and heading date + 7days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Boseogheug_chal seed development and heading date + 7days Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Boseogheug_chal RNA_seq library at seed development and heading date + 14days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Boseogheug_chal seed development and heading date + 14days Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Sinnongheug_chal RNA_seq library at seed development and heading date, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Sinnongheug_chal seed development and heading date Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Sinnongheug_chal RNA_seq library at seed development and heading date + 7days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Sinnongheug_chal seed development and heading date + 7days Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Sinnongheug_chal RNA_seq library at seed development and heading date + 14days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Sinnongheug_chal seed development and heading date + 14days Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Dongjin RNA_seq library at seed development and heading date, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Dongjin seed development and heading date Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Dongjin RNA_seq library at seed development and heading date + 7days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Dongjin seed development and heading date + 7days Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Dongjin RNA_seq library at seed development and heading date + 14days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Dongjin seed development and heading date + 14days Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Dongjin_chal RNA_seq library at seed development and heading date, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Dongjin_chal seed development and heading date Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Dongjin_chal RNA_seq library at seed development and heading date + 7days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Dongjin_chal seed development and heading date + 7days Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Dongjin_chal RNA_seq library at seed development and heading date + 14days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Dongjin_chal seed development and heading date + 14days Transcriptom sequencing


text: German Cancer Research Center

text: public

tag: Namespace:German Cancer Research Center

text: human

text: Homo sapiens

text: Homo sapiens

text: Cell line


text: German Cancer Research Center

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Human blood sample


text: German Cancer Research Center

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Frozen colorectal cancer liver metastasis specimen


text: German Cancer Research Center

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FFPE colorectal cancer liver metastasis specimen


text: German Cancer Research Center

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FFPE colorectal cancer specimen


text: German Cancer Research Center

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cell line derived from human colorectal cancer


text: public

tag: Namespace:Bioforsk - Norwegian Institute of Agricultural and Environmental Research

text: potato

text: Solanum tuberosum

text: Solanum tuberosum

text: Transcriptomics of potato tubers infected with Streptomyces turgidiscabies


text: Bioforsk - Norwegian Institute of Agricultural and Environmental Research

text: public

text: potato

text: Solanum tuberosum

text: Solanum tuberosum


E-MTAB-3376:Sample 15

text: Faculty of Animal Science and Food Engineering - University of Sao Paulo

text: public

text: E-MTAB-3376:Sample 15

text: ArrayExpress

characteristic: broker name

text: Protocols: liver samples were collected by biopsy and, immediately frozen in liquid nitrogen and kept in -80°C freezer until RNA extraction RNeasy mini kit (QIAGEN, Crawley, West Sussex, UK) was used in accordance with guidelines supplied by manufacturer to extract total RNA from around 30 mg liver biopsy samples Preparation of libraries were carried out using TruSeq™ RNA Sample Prep Kit in accordance with TruSeq® RNA Sample Preparation v2 Guide (Illumina, USA, 2012, Part # 15026495 Rev. D)

text: low feed efficiency

characteristic: diet

text: Bos indicus

text: Bos indicus

text: liver

characteristic: organism part

text: Bos indicus

text: male

characteristic: sex

text: Sample 15


Isomatamidium RITseq1

text: DUNDEE

text: public

characteristic: SRA accession

text: Isomatamidium RITseq1

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Isometamidium RITseq


text: JEJU NATIONAL UNIVERSITY

text: public

tag: Namespace:JEJU NATIONAL UNIVERSITY

text: gut metagenome

characteristic: organism

text: gut metagenome

text: swine gut


text: UNIVERSITY OF SASSARI

text: public

tag: Namespace:UNIVERSITY OF SASSARI

characteristic: collection date

text: Aerial wind-mediated dust Metagenome

characteristic: description

text: Italy, Sassari

characteristic: geographic location (country and/or sea)

text: aerial dust

characteristic: isolation source

text: 40.75 N 8.49 E

characteristic: lat lon

text: dust metagenome

text: dust metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Paraliobacillus sp. PM-2

text: Paraliobacillus sp. PM-2


P. immobile strain E (DSM 1986)1

text: Institute of Technical Biochemistry

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: P. immobile strain E (DSM 1986)1

tag: Namespace:Institute of Technical Biochemistry

characteristic: Submitter Id

text: Whole-genome shotgun sequencing Phenylobacterium immobile strain E (DSM 1986)

text: Phenylobacterium immobile (ATCC 35973)

text: Phenylobacterium immobile (ATCC 35973)

text: (strain E)

characteristic: strain

text: Draft genome sequence of Phenylobacterium immobile strain E (DSM 1986)


text: SLU

text: public

characteristic: SRA accession

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: SLE


TC Reference library

text: IPK GATERSLEBEN

text: public

text: TC Reference library

tag: Namespace:IPK GATERSLEBEN

text: fava bean

text: Pooled RNA isolated from cotyledons

characteristic: description

text: Vicia faba

text: Vicia faba

text: TC Reference library


text: Institute of Bioinformatics

text: public

tag: Namespace:Institute of Bioinformatics

text: human

text: patient 2 female tumor relapse 2

text: Homo sapiens

text: Homo sapiens


text: Institute of Bioinformatics

text: public

text: human

text: patient 2 female nontumor normal tissue baseline

text: Homo sapiens

text: Homo sapiens


text: Institute of Bioinformatics

text: public

text: human

text: patient 2 female tumor relapse 1

text: Homo sapiens

text: Homo sapiens


text: Institute of Bioinformatics

text: public

text: human

text: patient 2 female tumor primary tumor

text: Homo sapiens

text: Homo sapiens


text: Institute of Bioinformatics

text: public

text: human

text: patient 1 male nontumor normal tissue baseline

text: Homo sapiens

text: Homo sapiens


text: Institute of Bioinformatics

text: public

text: human

text: patient 1 male tumor relapse 1

text: Homo sapiens

text: Homo sapiens


text: Institute of Bioinformatics

text: public

text: human

text: patient 1 male tumor relapse 2

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF GRANADA

text: public

tag: Namespace:UNIVERSITY OF GRANADA

text: anammox bacterium A-3

text: anammox bacterium A-3

text: bacterial diversity in full scale anammox bioreactors


text: VT

text: public

text: biofilm

text: metagenome

characteristic: sampling date

text: metagenome

text: biofilmglassbeads


text: VT

text: public

text: water

text: chloramine

characteristic: disinfectant

text: metagenome

text: cement

characteristic: pipe materials

text: simulated water heaters

characteristic: sampling system

text: metagenome

characteristic: water age


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VT

text: public

text: water

text: chloramine

text: metagenome

text: iron

text: simulated water heaters

text: metagenome

characteristic: title


characteristic: External Id

text: VT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: water

text: chloramine

text: metagenome

text: PVC

text: simulated water heaters

text: metagenome


text: VT

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: water

text: chlorine

text: metagenome

text: cement

text: simulated water heaters

text: metagenome


text: VT

text: public

text: water

characteristic: description

text: chlorine

text: metagenome

characteristic: organism

text: iron

text: simulated water heaters

text: metagenome


text: VT

text: public

text: water

text: chlorine

characteristic: disinfectant

text: metagenome

text: PVC

characteristic: sampling date

text: simulated water heaters

text: metagenome


text: VT

text: public

text: water

text: chloramine

text: metagenome

text: cement

characteristic: pipe materials

text: simulated distribution systems

characteristic: sampling system

text: metagenome


characteristic: ENA-CHECKLIST

text: VT

text: public

text: water

text: chloramine

text: metagenome

text: iron

text: simulated distribution systems

text: metagenome

characteristic: water age


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VT

text: public

text: water

text: chloramine

text: metagenome

text: PVC

text: simulated distribution systems

text: metagenome


characteristic: External Id

text: VT

text: public

text: water

text: chlorine

text: metagenome

text: cement

text: simulated distribution systems

text: metagenome

characteristic: title


text: VT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: water

text: chlorine

text: metagenome

text: iron

text: simulated distribution systems

text: metagenome


text: VT

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: water

text: chlorine

text: metagenome

text: PVC

text: simulated distribution systems

text: metagenome


text: UNIBE-IG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: horse

characteristic: common name

text: Equus caballus

text: Equus caballus

text: A novel KIT variant in an Icelandic horse with white spotted coat colour


Tac-C

text: public

text: Tac-C

tag: Namespace:BIODIVERSITY AND CLIMATE RESEARCH CENTRE

text: This pool contains DNA from a mixture of 109 fish sampled from a clear water habitat in the Tacotalpa river drainage

characteristic: description

text: Mexico

characteristic: geographic location (country and/or sea)

text: Poecilia mexicana

characteristic: organism

text: Poecilia mexicana

text: Tac-C


Tac-S

text: BIODIVERSITY AND CLIMATE RESEARCH CENTRE

text: public

text: Tac-S

text: This pool contains DNA from a mixture of 175 fish sampled from a sulphidic habitat in the Tacotalpa river drainage

text: Mexico

text: Poecilia mexicana

text: Poecilia mexicana

text: Tac-S


Puy-C

text: public

text: Puy-C

text: This pool contains DNA from a mixture of 103 fish sampled from a clear water habitat in the Puyacatengo river drainage

text: Mexico

text: Poecilia mexicana

text: Poecilia mexicana

text: Puy-C


Puy-S

text: public

text: Puy-S

text: This pool contains DNA from a mixture of 200 fish sampled from a sulphidic habitat in the Puyacatengo river drainage

text: Mexico

text: Poecilia mexicana

text: Poecilia mexicana

text: Puy-S


text: UNIMI

text: public

text: brown dog tick

text: R. sanguineus larvae whole transcriptome

text: larvae

characteristic: dev stage

text: Italy

text: Rhipicephalus sanguineus

text: Rhipicephalus sanguineus

text: R. sanguineus larvae transcriptome


characteristic: ENA-CHECKLIST

text: IPK GATERSLEBEN

text: public

text: fava bean

text: VfEP_transcripome assembly

text: Vicia faba

text: Vicia faba


L.nudifrons transcriptome1

text: Alfred Wegener Institute

text: public

text: L.nudifrons transcriptome1

tag: Namespace:Alfred Wegener Institute

text: Tina Sandersfeld, Nils Koschnik

characteristic: collected by

characteristic: collection date

text: yellowfin notie

text: All procedures, including sample collection and experimental research conducted on these animals were in accordance with the guidelines of the German law and approved by the veterinary inspection office (Senatorin für Bildung. Wissenschaft und Gesundheit, Bremen/Germany, permit number AZ: 522-27-11/02-00 (93)). Speciemens of Lepidonotothen nudifrons were collected in March/April 2012 near Elephant Island at a depth of 70 - 322 m, water temperature of 0.0 - 0.8°C and salinity of 34.2 -34.5‰ by bottom trawl (RV Polarstern, ANT-XXVIII/4).

text: Antarctic Peninsula

text: open ocean at a depth of 70 - 322 m, water temperature of 0.0 - 0.8°C and salinity of 34.2 -34.5‰ by bottom trawl

characteristic: isolation source

text: Lepidonotothen nudifrons

text: Lepidonotothen nudifrons

text: spleen

characteristic: tissue type

text: Spleen Transcriptome of the Antarctic Peninsula notothenioid fish Lepidonotothen nudifrons


name: Quiescent infection of human neurons with VZV 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BAR ILAN

text: public

tag: Namespace:BAR ILAN

text: Varicella-zoster virus

text: Human herpesvirus 3

text: Human herpesvirus 3

text: human nuerons infected with VZV

characteristic: title


name: productive infection of human neurons with VZV 1

text: BAR ILAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Varicella-zoster virus

text: Human herpesvirus 3

text: Human herpesvirus 3

text: human nuerons infected with VZV


name: productive infection of human neurons with VZV 2

text: BAR ILAN

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Varicella-zoster virus

characteristic: common name

text: Human herpesvirus 3

text: Human herpesvirus 3

text: human nuerons infected with VZV


text: CHUV

text: public

text: human

text: KS proband and brother

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: JUSTUS LIEBIG UNIVERSITY

text: public

tag: Namespace:JUSTUS LIEBIG UNIVERSITY

characteristic: collection date

text: L. monocytogenes 4b dominant clone India

text: India

characteristic: geographic location (country and/or sea)

text: Human (Abortion)

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: serotype


characteristic: ENA-FIRST-PUBLIC

text: KEMRI-Wellcome Trust Research Programme

text: public

tag: Namespace:KEMRI-Wellcome Trust Research Programme

text: Sediment sample from Hampshire, UK

text: United Kingdom (UK)

text: Peptoclostridium difficile

text: Peptoclostridium difficile


characteristic: ENA-LAST-UPDATE

text: JUSTUS LIEBIG UNIVERSITY

text: public

text: L. monocytogenes 4b India dominant clone

text: India

text: Invertebrates (Mosquito)

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes


WW1_RNA-Seq Variants

characteristic: External Id

text: THE SAINSBURY LABORATORY

text: public

text: WW1_RNA-Seq Variants

tag: Namespace:THE SAINSBURY LABORATORY

text: Variant analysis of RNA-Seq data of a fungla infected sample isolated from Wayland Wood (WW1), Norfolk, England. RNA_seq reads from WW1 are aligned to Kenninghall wood (KW1) version 1 scaffolds (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_scaffolds.fa) using BWA mem v 0.7.4 and Samtools 0.1.19 was used to generate variants

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Wayland wood1 (WW1) variants from RNA-seq reads alignment against v1 KW1 scaffolds

characteristic: title


AT1_RNA-Seq Variants

tag: attribute

text: THE SAINSBURY LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: AT1_RNA-Seq Variants

text: Variant analysis of RNA-Seq data of a fungla infected sample isolated from Ashwellthorpe1 (AT1), Norfolk, England. RNA_seq reads from AT1 are aligned to Kenninghall wood (KW1) version 1 contigs (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_contigs.fa) using BWA mem v 0.7.4 and Samtools 0.1.17 was used to generate variants. Since Samtools 0.1.17, doesn't generate contig names in the header, such a header was incorporated from a file generated using samtools 0.1.19. Contig/chromosome names are required to submit vcf files on ENA.

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Ashwellthorpe1 (AT1) variants from RNA-seq reads alignment against v1 KW1 contigs


UB1_RNA-Seq Variants

text: THE SAINSBURY LABORATORY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UB1_RNA-Seq Variants

text: Variant analysis of RNA-Seq data of a fungla infected sample isolated from Upton broad and marshes1 (UB1), Norfolk, England. RNA_seq reads from UB1 are aligned to Kenninghall wood (KW1) version 1 contigs (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_contigs.fa) using BWA mem v 0.7.4 and Samtools 0.1.17 was used to generate variants. Since Samtools 0.1.17, doesn't generate contig names in the header, such a header was incorporated from a file generated using samtools 0.1.19. Contig/chromosome names are required to submit vcf files on ENA.

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Upton broad and marshes1 (UB1) variants from RNA-seq reads alignment against v1 KW1 contigs


PARK4 59F GA1 Lane7Read2

text: Alacris Theranostics GmbH

text: public

characteristic: SRA accession

text: PARK4 59F GA1 Lane7Read2

tag: Namespace:Alacris Theranostics GmbH

characteristic: Submitter Id

text: human

text: Female at age 59 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 59F GA1 Lane8Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 59F GA1 Lane8Read1

text: human

characteristic: common name

text: Female at age 59 years, affected

characteristic: description

text: Homo sapiens

text: Homo sapiens


PARK4 59F GA1 Lane8Read2

characteristic: ENA-CHECKLIST

text: Alacris Theranostics GmbH

text: public

text: PARK4 59F GA1 Lane8Read2

text: human

text: Female at age 59 years, affected

text: Homo sapiens

characteristic: organism

text: Homo sapiens


CNT 54F GA4 Lane7Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 54F GA4 Lane7Read1

text: human

text: Female at age 54 years, control

text: Homo sapiens

text: Homo sapiens


CNT 54F GA4 Lane7Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 54F GA4 Lane7Read2

text: human

text: Female at age 54 years, control

text: Homo sapiens

text: Homo sapiens


CNT 54F GA4 Lane8Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 54F GA4 Lane8Read1

text: human

text: Female at age 54 years, control

text: Homo sapiens

text: Homo sapiens


CNT 54F GA4 Lane8Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 54F GA4 Lane8Read2

text: human

text: Female at age 54 years, control

text: Homo sapiens

text: Homo sapiens


PARK4 53M GA10 Lane7Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 53M GA10 Lane7Read1

text: human

text: Male at age 53 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 53M GA10 Lane7Read2

text: Alacris Theranostics GmbH

text: public

text: PARK4 53M GA10 Lane7Read2

text: human

text: Male at age 53 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 53M GA10 Lane8Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 53M GA10 Lane8Read1

text: human

text: Male at age 53 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 53M GA10 Lane8Read2

text: Alacris Theranostics GmbH

text: public

text: PARK4 53M GA10 Lane8Read2

text: human

text: Male at age 53 years, affected

text: Homo sapiens

text: Homo sapiens


CNT 45M GA24 Lane7Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 45M GA24 Lane7Read1

text: human

text: Male at age 45 years, control

text: Homo sapiens

text: Homo sapiens


CNT 45M GA24 Lane7Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 45M GA24 Lane7Read2

text: human

text: Male at age 45 years, control

text: Homo sapiens

text: Homo sapiens


CNT 45M GA24 Lane8Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 45M GA24 Lane8Read1

text: human

text: Male at age 45 years, control

text: Homo sapiens

text: Homo sapiens


CNT 45M GA24 Lane8Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 45M GA24 Lane8Read2

text: human

text: Male at age 45 years, control

text: Homo sapiens

text: Homo sapiens


CNT 57M GA3 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 57M GA3 Lane1Read1

text: human

text: Male at age 57 years, control

text: Homo sapiens

text: Homo sapiens


CNT 57M GA3 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 57M GA3 Lane1Read2

text: human

text: Male at age 57 years, control

text: Homo sapiens

text: Homo sapiens


CNT 57M GA3 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 57M GA3 Lane2Read1

text: human

text: Male at age 57 years, control

text: Homo sapiens

text: Homo sapiens


CNT 57M GA3 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 57M GA3 Lane2Read2

text: human

text: Male at age 57 years, control

text: Homo sapiens

text: Homo sapiens


PARK4 50M GA5 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 50M GA5 Lane1Read1

text: human

text: Male at age 50 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 50M GA5 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: PARK4 50M GA5 Lane1Read2

text: human

text: Male at age 50 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 50M GA5 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 50M GA5 Lane2Read1

text: human

text: Male at age 50 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 50M GA5 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: PARK4 50M GA5 Lane2Read2

text: human

text: Male at age 50 years, affected

text: Homo sapiens

text: Homo sapiens


CNT 42F GA6 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 42F GA6 Lane1Read1

text: human

text: Female at age 42 years, control

text: Homo sapiens

text: Homo sapiens


CNT 42F GA6 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 42F GA6 Lane1Read2

text: human

text: Female at age 42 years, control

text: Homo sapiens

text: Homo sapiens


CNT 42F GA6 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 42F GA6 Lane2Read1

text: human

text: Female at age 42 years, control

text: Homo sapiens

text: Homo sapiens


CNT 42F GA6 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 42F GA6 Lane2Read2

text: human

text: Female at age 42 years, control

text: Homo sapiens

text: Homo sapiens


CNT 42M GA7 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 42M GA7 Lane1Read1

text: human

text: Male at age 42 years, control

text: Homo sapiens

text: Homo sapiens


CNT 42M GA7 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 42M GA7 Lane1Read2

text: human

text: Male at age 42 years, control

text: Homo sapiens

text: Homo sapiens


CNT 42M GA7 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: CNT 42M GA7 Lane2Read1

text: human

text: Male at age 42 years, control

text: Homo sapiens

text: Homo sapiens


CNT 42M GA7 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: CNT 42M GA7 Lane2Read2

text: human

text: Male at age 42 years, control

text: Homo sapiens

text: Homo sapiens


PARK4 47F GA8 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 47F GA8 Lane1Read1

text: human

text: Male at age 47 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 47F GA8 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: PARK4 47F GA8 Lane1Read2

text: human

text: Male at age 47 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 47F GA8 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 47F GA8 Lane2Read1

text: human

text: Male at age 47 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 47F GA8 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: PARK4 47F GA8 Lane2Read2

text: human

text: Male at age 47 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 50M GA9 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 50M GA9 Lane1Read1

text: human

text: Male at age 50 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 50M GA9 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: PARK4 50M GA9 Lane1Read2

text: human

text: Male at age 50 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 50M GA9 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 50M GA9 Lane2Read1

text: human

text: Male at age 50 years, affected

text: Homo sapiens

text: Homo sapiens


PARK4 50M GA9 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: PARK4 50M GA9 Lane2Read2

text: human

text: Male at age 50 years, affected

text: Homo sapiens

text: Homo sapiens


text: public

text: fruit fly

text: TruSeq PCR free; Dmel South Africa; Pool-seq

text: Drosophila melanogaster

text: Drosophila melanogaster

text: library 105a


text: public

text: TruSeq PCR free; Dsim South Africa; Pool-seq

text: Drosophila simulans

text: Drosophila simulans

text: library 105a


52M 40CAG SCA162 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: 52M 40CAG SCA162 Lane1Read1

text: human

text: 52-year-old male SCA2 patient with 40CAG expansion in ATXN2

text: Homo sapiens

text: Homo sapiens


52M 40CAG SCA162 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: 52M 40CAG SCA162 Lane1Read2

text: human

text: Homo sapiens

text: Homo sapiens


52M 40CAG SCA162 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: 52M 40CAG SCA162 Lane2Read1

text: human

text: Homo sapiens

text: Homo sapiens


52M 40CAG SCA162 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: 52M 40CAG SCA162 Lane2Read2

text: human

text: Homo sapiens

text: Homo sapiens


67M 39CAG SCA721 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: 67M 39CAG SCA721 Lane1Read1

text: human

text: 67-year-old male SCA2 patient with 39CAG expansion in ATXN2

text: Homo sapiens

text: Homo sapiens


67M 39CAG SCA721 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: 67M 39CAG SCA721 Lane1Read2

text: human

text: Homo sapiens

text: Homo sapiens


67M 39CAG SCA721 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: 67M 39CAG SCA721 Lane2Read1

text: human

text: Homo sapiens

text: Homo sapiens


67M 39CAG SCA721 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: 67M 39CAG SCA721 Lane2Read2

text: human

text: Homo sapiens

text: Homo sapiens


20F 44CAG SCA958 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: 20F 44CAG SCA958 Lane1Read1

text: human

text: 20-year-old female SCA2 patient with 44CAG expansion in ATXN2

text: Homo sapiens

text: Homo sapiens


20F 44CAG SCA958 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: 20F 44CAG SCA958 Lane1Read2

text: human

text: Homo sapiens

text: Homo sapiens


20F 44CAG SCA958 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: 20F 44CAG SCA958 Lane2Read1

text: human

text: Homo sapiens

text: Homo sapiens


20F 44CAG SCA958 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: 20F 44CAG SCA958 Lane2Read2

text: human

text: Homo sapiens

text: Homo sapiens


73M WT SCA718 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: 73M WT SCA718 Lane1Read1

text: human

text: 73-year-old male control relative

text: Homo sapiens

text: Homo sapiens


73M WT SCA718 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: 73M WT SCA718 Lane1Read2

text: human

text: 73-year-old male control relative

text: Homo sapiens

text: Homo sapiens


73M WT SCA718 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: 73M WT SCA718 Lane2Read1

text: human

text: 73-year-old male control relative

text: Homo sapiens

text: Homo sapiens


73M WT SCA718 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: 73M WT SCA718 Lane2Read2

text: human

text: 73-year-old male control relative

text: Homo sapiens

text: Homo sapiens


70M WT SCA719 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: 70M WT SCA719 Lane1Read1

text: human

text: 70-year-old male control relative

text: Homo sapiens

text: Homo sapiens


70M WT SCA719 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: 70M WT SCA719 Lane1Read2

text: human

text: 70-year-old male control relative

text: Homo sapiens

text: Homo sapiens


70M WT SCA719 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: 70M WT SCA719 Lane2Read1

text: human

text: 70-year-old male control relative

text: Homo sapiens

text: Homo sapiens


70M WT SCA719 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: 70M WT SCA719 Lane2Read2

text: human

text: 70-year-old male control relative

text: Homo sapiens

text: Homo sapiens


28F WT SCA722 Lane1Read1

text: Alacris Theranostics GmbH

text: public

text: 28F WT SCA722 Lane1Read1

text: human

text: 28-year-old female control relative

text: Homo sapiens

text: Homo sapiens


28F WT SCA722 Lane1Read2

text: Alacris Theranostics GmbH

text: public

text: 28F WT SCA722 Lane1Read2

text: human

text: 28-year-old female control relative

text: Homo sapiens

text: Homo sapiens


28F WT SCA722 Lane2Read1

text: Alacris Theranostics GmbH

text: public

text: 28F WT SCA722 Lane2Read1

text: human

text: 28-year-old female control relative

text: Homo sapiens

text: Homo sapiens


28F WT SCA722 Lane2Read2

text: Alacris Theranostics GmbH

text: public

text: 28F WT SCA722 Lane2Read2

text: human

text: 28-year-old female control relative

text: Homo sapiens

text: Homo sapiens


text: KEMRI-Wellcome Trust Research Programme

text: public

text: Sediment sample from Hampshire, UK

text: United Kingdom (UK)

characteristic: geographic location (country and/or sea)

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: LEIDEN UNIVERSITY MEDICAL CENTER

text: public

tag: Namespace:LEIDEN UNIVERSITY MEDICAL CENTER

text: house mouse

text: RNA-seq on myoblasts and myotubes

text: Mus musculus

text: Mus musculus


Massilibacterium senegalense

text: URMITE

text: public

text: Massilibacterium senegalense

text: Bacillaceae bacterium mt8

text: Bacillaceae bacterium mt8

characteristic: strain

text: Massilibacterium senegalense genome


characteristic: ENA-FIRST-PUBLIC

text: ABERSYTWYTH UNIVERSITY

text: public

tag: Namespace:ABERSYTWYTH UNIVERSITY

text: metagenome

text: metagenome

text: LowRFI


characteristic: ENA-LAST-UPDATE

text: ABERSYTWYTH UNIVERSITY

text: public

text: metagenome

text: metagenome

text: LowRFI


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: thale cress

text: Col control ChIP with anti-GFP Replicate 1

text: 10-day oldseedling

characteristic: dev stage

text: Columbia

characteristic: ecotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: TRB1 ChIP-seq in WT and lhp1


characteristic: External Id

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: public

text: thale cress

text: Col control ChIP with anti-GFP Replicate 2

text: 10-day oldseedling

text: Columbia

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: TRB1 ChIP-seq in WT and lhp1

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: thale cress

text: 35Sprom:TRB1-GFP in trb1-1 ChIP with anti-GFP Replicate 1

text: 10-day oldseedling

text: Columbia

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: TRB1 ChIP-seq in WT and lhp1


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: thale cress

text: 35Sprom:TRB1-GFP in trb1-1 ChIP with anti-GFP Replicate 2

text: 10-day oldseedling

text: Columbia

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: TRB1 ChIP-seq in WT and lhp1


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: 35Sprom:TRB1-GFP in trb1-1 lhp1 ChIP with anti-GFP Replicate 1

text: 10-day oldseedling

text: Columbia

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: TRB1 ChIP-seq in WT and lhp1


text: public

text: thale cress

characteristic: common name

text: 35Sprom:TRB1-GFP in trb1-1 lhp1 ChIP with anti-GFP Replicate 2

characteristic: description

text: 10-day oldseedling

text: Columbia

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: TRB1 ChIP-seq in WT and lhp1


characteristic: ENA-CHECKLIST

text: iBiMED - Institute of Biomedicine

text: public

tag: Namespace:iBiMED - Institute of Biomedicine

text: baker's yeast

text: Evolved line carrying the mistranslation causing Ser-tRNA(CAG) construct.

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Evolved line 1


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 2


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 3


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 4


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 5


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 6


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 7


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 8


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 9


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 10


text: iBiMED - Institute of Biomedicine

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved line 11


Lascolabacillus massiliensis

text: URMITE

text: public

text: Lascolabacillus massiliensis

text: bacterium SIT8

text: bacterium SIT8

characteristic: strain

text: Lascolabacillus massiliensis genome


Streptococcus gularis FF101

characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

text: Streptococcus gularis FF101

text: Streptococcus sp. FF10

text: Streptococcus sp. FF10

text: Streptococcus gularis FF10


Paenibacillus numidis

characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: Paenibacillus numidis

text: Paenibacillus sp. GM2

text: Paenibacillus sp. GM2

text: Paenibacillus numidis genome


text: public

text: rice

text: Whole genome resequencing of the Korean rice, Heugjinju, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Heugjinju WGS


text: public

text: rice

text: Whole genome resequencing of the Korean rice, Heugseol, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Heugseol WGS


text: public

text: rice

text: Whole genome resequencing of the Korean rice, Heugnam, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Heugnam WGS


text: public

text: rice

text: Whole genome resequencing of the Korean rice, Josaengheug_chal, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Josaengheug_chal WGS


text: public

text: rice

text: Whole genome resequencing of the Korean rice, Boseogheug_chal, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Boseogheug_chal WGS


text: public

text: rice

text: Whole genome resequencing of the Korean rice, Sinnongheug_chal, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Sinnongheug_chal WGS


text: public

text: rice

text: Whole genome resequencing of the Korean rice, Dongjin, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: dongjin WGS


text: public

text: rice

text: Whole genome resequencing of the Korean rice, Dongjin_chal, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Dongjin_chal WGS


text: CNAG

text: public

text: house mouse

characteristic: mouse line identifier

text: Mus musculus

text: Mus musculus

text: mouse exome sequencing after ENU mutagenesis


text: UFPR

text: public

text: ArrayExpress

characteristic: broker name

text: Protocols: H. seropedicae SmR1, streptomycin resistant, was grown at 30 degrees C and 120 rpm in NFbHPN medium (Klassen et al., 1997) in the presence (+Nar) or absence (-Nar) of 100 uM of naringenin containing streptomycin (80 ug.mL-1)for 6 hours (optical density at 600 nm of 0.8). Cells were collected by centrifugation. The total RNA was isolated using RiboPureTM-Bacteria Kit (Ambion) After rRNA depletion 500 ng of depleted rRNA was used to construct the sequencing libraries following standard protocols using the SOLiD Total RNA-Seq Kit (Life Technologies). The libraries were barcoded by using the SOLiD Transcriptome Multiplexing Kit (Life Technologies).

text: Herbaspirillum seropedicae SmR1

text: Herbaspirillum seropedicae SmR1

text: Herbaspirillum seropedicae SmR1


characteristic: External Id

text: ABERSYTWYTH UNIVERSITY

text: public

text: metagenome

text: metagenome

text: LowRFI


text: ED

text: public

text: house mouse

text: RNA from embryonic day 16.5 mouse CSB, genotype=wild-type M3 and wild-type M4

text: Mus musculus

text: Mus musculus

characteristic: title


text: ED

characteristic: INSDC center name

text: public

text: house mouse

text: RNA from embryonic day 16.5 mouse CSB, genotype=wild-type M1 and wild-type M2

text: Mus musculus

text: Mus musculus


text: ED

characteristic: INSDC first public

text: public

text: house mouse

text: RNA from embryonic day 16.5 mouse CSB, genotype=wild-type C1 and wild-type C2

text: Mus musculus

text: Mus musculus


text: ED

characteristic: INSDC last update

text: public

text: house mouse

text: RNA from embryonic day 16.5 mouse CSB, genotype=wild-type C3 and wild-type C4

text: Mus musculus

text: Mus musculus


text: ED

text: public

characteristic: INSDC status

text: house mouse

text: RNA from embryonic day 16.5 mouse CSB, genotype=wild-type M5 and wild-type M6

text: Mus musculus

text: Mus musculus


text: ED

text: public

characteristic: SRA accession

text: house mouse

text: RNA from embryonic day 16.5 mouse CSB, genotype=wild-type C5 and wild-type C6

text: Mus musculus

text: Mus musculus


text: CORNELL

text: public

characteristic: Submitter Id

text: skin

characteristic: bio material

text: horse

text: RNA extracted using an alcohol and salt precipitation procedure from a snap frozen skin biopsy taken from unpigmented rump of a male LP/lp horse.

text: Equus caballus

text: Equus caballus

text: male

characteristic: sex

text: LP/lp skin site B


AT2_RNA-Seq Variants

characteristic: ENA-CHECKLIST

text: THE SAINSBURY LABORATORY

text: public

text: AT2_RNA-Seq Variants

text: Variant analysis of RNA-Seq data of a fungla infected sample isolated from Ashwellthorpe2 (AT2), Norfolk, England. RNA_seq reads from AT2 are aligned to Kenninghall wood (KW1) version 1 contigs (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_contigs.fa) using BWA mem v 0.7.4 and Samtools 0.1.17 was used to generate variants. Since Samtools 0.1.17, doesn't generate contig names in the header, such a header was incorporated from a file generated using samtools 0.1.19. Contig/chromosome names are required to submit vcf files on ENA.

characteristic: description

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Ashwellthorpe2 (AT2) variants from RNA-seq reads alignment against v1 KW1 contigs


LM1_RNA-Seq Variants

text: THE SAINSBURY LABORATORY

text: public

text: LM1_RNA-Seq Variants

text: Variant analysis of RNA-Seq data of a fungla infected sample isolated from Lolly moor (LM1), Norfolk, England. RNA_seq reads from LM1 are aligned to Kenninghall wood (KW1) version 1 scaffolds (available at https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1/Chalara_fraxinea_TGAC_s1v1_scaffolds.fa) using BWA mem v 0.7.4 and Samtools 0.1.19 was used to generate variants

text: Hymenoscyphus fraxineus

characteristic: organism

text: Hymenoscyphus fraxineus

text: Lolly moor1 (LM1) variants from RNA-seq reads alignment against v1 KW1 scaffolds


characteristic: ENA-FIRST-PUBLIC

text: DGAMNRBC

text: public

text: whole genome shotgun sequence of Bacillus atrophaeus 930029

text: Bacillus atrophaeus

text: Bacillus atrophaeus

characteristic: strain

text: WGS of bacillus atrophaeus 930029


Rsoli

characteristic: ENA-LAST-UPDATE

text: CEBITEC

text: public

text: Rsoli

text: Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)

characteristic: isolate

text: Rhizoctonia solani AG-1 IB

text: Rhizoctonia solani AG-1 IB


sample for PRJEB8976

characteristic: External Id

text: Genoscope CEA

text: public

text: sample for PRJEB8976

tag: Namespace:Genoscope CEA

text: sample for PRJEB8976, registered by ENA

text: Zobellia galactanivorans

text: Zobellia galactanivorans

text: DsiJT

text: sample for PRJEB8976


text: FONDAZIONE EDMUND MACH

text: public

tag: Namespace:FONDAZIONE EDMUND MACH

text: metagenome

text: metagenome

text: Red colobus gut microbiota

characteristic: title


E-MTAB-3415:Sample 1

text: Medical Parasitology Unity

characteristic: INSDC center name

text: public

text: E-MTAB-3415:Sample 1

tag: Namespace:Medical Parasitology Unity

text: ArrayExpress

characteristic: broker name

text: Protocols: Collection of salivary glands from An. gambiae infected by P. berghei and non-infected RNA sequencing between two conditions: Anopheles gambiae salivary glands infected by Plasmodium berghei vs uninfected

text: adult

characteristic: developmental stage

text: malaria

characteristic: infect

text: Anopheles gambiae S

text: Anopheles gambiae S

text: salivary gland

characteristic: organism part

text: Anopheles gambiae S

text: female

text: Sample 1


text: Medical Parasitology Unity

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: adult

text: Anopheles gambiae S

text: Anopheles gambiae S

text: salivary gland

text: Anopheles gambiae S

text: female

text: Control


characteristic: ENA-CHECKLIST

text: KAROLINSKA INSITUTET

text: public

tag: Namespace:KAROLINSKA INSITUTET

characteristic: anonymized name

text: Blastomere, 6-cell embryo

characteristic: cell type

text: human

characteristic: common name

text: Single-cell

characteristic: description

text: Day 3 embryo

characteristic: dev stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Gene expression during the first three days of human development


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KAROLINSKA INSITUTET

characteristic: INSDC center name

text: public

text: Blastomere, 4-cell embryo

text: human

text: Single-cell

text: Day 3 embryo

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: KAROLINSKA INSITUTET

characteristic: INSDC first public

text: public

text: Blastomere, 8-cell embryo

text: human

text: Single-cell

text: Day 3 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC last update

text: public

text: Blastomere, 7-cell embryo

text: human

text: Single-cell

text: Day 3 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: INSDC status

text: Blastomere, 5-cell embryo

text: human

text: Single-cell

text: Day 3 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: SRA accession

text: Blastomere, 4-cell embryo

text: human

text: Single-cell

text: Day 2 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: Submitter Id

text: Oa

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: KAROLINSKA INSITUTET

text: public

text: Blastomere, 9-cell embryo

text: human

text: Single-cell

text: Day 3 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: anonymized name

text: Blastomere, 10-cell embryo

text: human

text: Single-cell

text: Day 3 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Ob

text: Oocyte

characteristic: cell type

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Oc

text: Oocyte

text: human

characteristic: common name

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Od

text: Oocyte

text: human

text: Single-cell

characteristic: description

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Oe

text: Oocyte

text: human

text: Single-cell

text: Oocyte

characteristic: dev stage

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Of

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: KAROLINSKA INSITUTET

text: public

text: Og

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: KAROLINSKA INSITUTET

text: public

text: Oh

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: KAROLINSKA INSITUTET

text: public

text: Za

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC center name

text: public

text: Zh

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zp

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: KAROLINSKA INSITUTET

characteristic: INSDC first public

text: public

text: Zu

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC last update

text: public

text: Zb

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: INSDC status

text: Zi

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: SRA accession

text: Zq

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: Submitter Id

text: Zr

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: KAROLINSKA INSITUTET

text: public

text: Zv

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: anonymized name

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zc

text: Zygote

characteristic: cell type

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zj

text: Zygote

text: human

characteristic: common name

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zw

text: Zygote

text: human

text: Single-cell

characteristic: description

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zd

text: Zygote

text: human

text: Single-cell

text: Zygote

characteristic: dev stage

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zk

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: KAROLINSKA INSITUTET

text: public

text: Zx

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: KAROLINSKA INSITUTET

text: public

text: Ze

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: KAROLINSKA INSITUTET

text: public

text: Zl

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC center name

text: public

text: Zy

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zm

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: KAROLINSKA INSITUTET

characteristic: INSDC first public

text: public

text: Zz

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC last update

text: public

text: Zf

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: INSDC status

text: Zn

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: SRA accession

text: Zs

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: Submitter Id

text: Zg

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: KAROLINSKA INSITUTET

text: public

text: Zo

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zt

characteristic: anonymized name

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zygote

characteristic: cell type

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZE

text: Zygote

text: human

characteristic: common name

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZG

text: Zygote

text: human

text: Single-cell

characteristic: description

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZI

text: Zygote

text: human

text: Single-cell

text: Zygote

characteristic: dev stage

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Oi

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: KAROLINSKA INSITUTET

text: public

text: Ok

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: KAROLINSKA INSITUTET

text: public

text: Blastomere, 4-cell embryo

text: human

text: Single-cell

text: Day 2 embryo

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: KAROLINSKA INSITUTET

text: public

text: Oo

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC center name

text: public

text: ZW

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Or

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: KAROLINSKA INSITUTET

characteristic: INSDC first public

text: public

text: ZF

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC last update

text: public

text: ZH

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: INSDC status

text: ZJ

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: SRA accession

text: Op

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: Submitter Id

text: ZX

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: KAROLINSKA INSITUTET

text: public

text: Os

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZP

characteristic: anonymized name

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Blastomere, 2-cell embryo

characteristic: cell type

text: human

text: Single-cell

text: Day 1 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZY

text: Zygote

text: human

characteristic: common name

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Ot

text: Oocyte

text: human

text: Single-cell

characteristic: description

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zygote

text: human

text: Single-cell

text: Zygote

characteristic: dev stage

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZK

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: KAROLINSKA INSITUTET

text: public

text: ZQ

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: KAROLINSKA INSITUTET

text: public

text: Oj

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: KAROLINSKA INSITUTET

text: public

text: Ol

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC center name

text: public

text: Blastomere, 4-cell embryo

text: human

text: Single-cell

text: Day 2 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Oq

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: KAROLINSKA INSITUTET

characteristic: INSDC first public

text: public

text: ZZ

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC last update

text: public

text: Ou

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: INSDC status

text: ZA

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: SRA accession

text: ZL

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: Submitter Id

text: ZR

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: KAROLINSKA INSITUTET

text: public

text: Om

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Ov

characteristic: anonymized name

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZB

text: Zygote

characteristic: cell type

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZM

text: Zygote

text: human

characteristic: common name

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZS

text: Zygote

text: human

text: Single-cell

characteristic: description

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Blastomere, 2-cell embryo

text: human

text: Single-cell

text: Day 1 embryo

characteristic: dev stage

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZC

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: KAROLINSKA INSITUTET

text: public

text: ZN

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: KAROLINSKA INSITUTET

text: public

text: ZT

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: KAROLINSKA INSITUTET

text: public

text: ZU

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC center name

text: public

text: ZD

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: ZO

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: KAROLINSKA INSITUTET

characteristic: INSDC first public

text: public

text: ZV

text: Zygote

text: human

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

characteristic: INSDC last update

text: public

text: On

text: Oocyte

text: human

text: Single-cell

text: Oocyte

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: INSDC status

text: Blastomere, 3-cell embryo

text: human

text: Single-cell

text: Day 2 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: SRA accession

text: Blastomere, 4-cell embryo

text: human

text: Single-cell

text: Day 2 embryo

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

characteristic: Submitter Id

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: KAROLINSKA INSITUTET

text: public

text: Ba

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bb

characteristic: anonymized name

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bc

text: Brain

characteristic: cell type

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bd

text: Brain

text: human

characteristic: common name

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Be

text: Brain

text: human

text: 50 pg of pooled total RNA

characteristic: description

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bf

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bg

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bh

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bi

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bj

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bk

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bl

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bm

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bn

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Bo

text: Brain

text: human

text: 50 pg of pooled total RNA

text: Homo sapiens

text: Homo sapiens


text: KAROLINSKA INSITUTET

text: public

text: Zygote

text: human

text: Single-cell

text: Zygote

characteristic: dev stage

text: Homo sapiens

text: Homo sapiens


HCTPa

text: KAROLINSKA INSITUTET

text: public

text: HCTPa

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: HaCaT cell line, replica a


characteristic: ENA-FIRST-PUBLIC

text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 12k, replica a


characteristic: ENA-LAST-UPDATE

text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 12k, replica a


characteristic: External Id

text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 12k, replica a


text: KAROLINSKA INSITUTET

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 10k, replica a


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 11k, replica a

characteristic: title


text: KAROLINSKA INSITUTET

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 10k, replica a


text: KAROLINSKA INSITUTET

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 10k, replica a


text: KAROLINSKA INSITUTET

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 07k, replica a


text: KAROLINSKA INSITUTET

text: public

characteristic: SRA accession

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 07k, replica a


text: KAROLINSKA INSITUTET

text: public

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 07k, replica a


characteristic: ENA-CHECKLIST

text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 04k, replica a


text: KAROLINSKA INSITUTET

text: public

characteristic: anonymized name

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 00k, replica a


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 04k, replica a


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 02k, replica a


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 05k, replica a


HCTPb

text: KAROLINSKA INSITUTET

text: public

text: HCTPb

text: human

text: Homo sapiens

text: Homo sapiens

text: HaCaT cell line, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 12k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 12k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 12k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 10k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 11k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 10k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 10k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 07k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 07k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 07k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 04k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 00k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 04k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 02k, replica b


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 05k, replica b


HCTPc

text: KAROLINSKA INSITUTET

text: public

text: HCTPc

text: human

text: Homo sapiens

text: Homo sapiens

text: HaCaT cell line, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 12k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 12k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 12k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 10k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 11k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 10k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 10k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 07k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 07k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 07k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 04k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, early passage, donor 00k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Cultured primary keratinocyte, late passage, donor 04k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 02k, replica c


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Epidermal tissue (spilit-thickness skin grafts), donor 05k, replica c


text: Verbruggen Lab

text: public

tag: Namespace:Verbruggen Lab

text: Australia: Coral Bay

characteristic: geographic location (country and/or sea)

text: Laurencia sp. JFC0032

text: Laurencia sp. JFC0032

text: MELU JFC0032

characteristic: specimen voucher

text: Laurencia JFC0032 plastid genome


text: public

text: rice

characteristic: common name

text: Transcriptom sequecing of the rice, Heugjinju RNA_seq library at seed development and heading date, using Illumina Hiseq 2000

characteristic: description

text: Oryza sativa

text: Oryza sativa

text: Rice, Heugjinju seed development and heading date Transcriptom sequencing


text: Universidad de Playa Ancha

text: public

tag: Namespace:Universidad de Playa Ancha

text: planktonic microbes

characteristic: bio material

text: 10 August 2011

characteristic: collection date

text: Chile

text: Water

characteristic: isolation source

characteristic: lat lon

text: aquatic metagenome

characteristic: organism

text: aquatic metagenome

text: 16S rRNA


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: rice

text: Transcriptom sequecing of the rice, Heugjinju RNA_seq library at seed development and heading date + 14days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Heugjinju seed development and heading date + 14days Transcriptom sequencing

characteristic: title


text: WAGENINGEN UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WAGENINGEN UNIVERSITY

characteristic: Submitter Id

text: Thermus thermophilus HB27

text: Thermus thermophilus HB27

text: HB27 WT


characteristic: ENA-CHECKLIST

text: WAGENINGEN UNIVERSITY

text: public

text: Thermus thermophilus HB27

text: Thermus thermophilus HB27

text: HB27 +Plasmid


text: KAROLINSKA INSITUTET

text: public

text: A

characteristic: assemblage

text: Staffan Svard

text: Johan Ankarklev

characteristic: collected by

text: human

characteristic: host

characteristic: isolate

text: Giardia intestinalis

text: Giardia intestinalis


text: public

text: rice

characteristic: common name

text: Transcriptom sequecing of the rice, Heugseol RNA_seq library at seed development and heading date + 14days, using Illumina Hiseq 2000

characteristic: description

text: Oryza sativa

text: Oryza sativa

text: Rice, Heugseol seed development and heading date + 14days Transcriptom sequencing


characteristic: ENA-FIRST-PUBLIC

text: public

text: rice

text: Transcriptom sequecing of the rice, Heugnam RNA_seq library at seed development and heading date + 7days, using Illumina Hiseq 2000

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: Rice, Heugnam seed development and heading date + 7days Transcriptom sequencing


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: rice

text: Transcriptom sequecing of the rice, Josaengheug_chal RNA_seq library at seed development and heading date + 7days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Josaengheug_chal seed development and heading date + 7days Transcriptom sequencing


text: INSTITUT PASTEUR

characteristic: INSDC center name

text: public

tag: Namespace:INSTITUT PASTEUR

text: ARS capture experiment

text: Candida glabrata

text: Candida glabrata

characteristic: strain

text: ARS capture experiment

characteristic: title


E-MTAB-3312:Sample 15

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3312:Sample 15

tag: Namespace:Sir William Dunn School of Pathology University of Oxford

text: ArrayExpress

characteristic: broker name

text: PRO2, cultured promastigotes in exponential growth phase; used to generate library enriched for transcript 3'ends Protocols: Promastigote-form L. mexicana (WHO strain MNYC/BZ/62/M379) were grown at 28°C in M199 medium (Life Technologies) supplemented with 2.2 g/L NaHCO3, 0.005% haemin, 40 mM 4-(2-Hydroxyethyl)piperazine-1-ethanesulfonic acid (HEPES) pH 7.4 and 10% FCS (Life Technologies 10500-064). Cells were maintained in exponential growth phase prior to RNA extraction. For determination of polyadenylation addition sites, polyadenylated RNA purified from total RNA was converted to cDNA using a 5’-T15VN-3’ oligonucleotide (V=A, G or C; N=T, A, G or C) primer to enrich for 3’ ends of transcripts. The cDNA was sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: promastigote

characteristic: developmental stage

text: not applicable (outside host)

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 15


characteristic: ENA-CHECKLIST

text: IGC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: fruit fly

text: Ancestral Population, Replicate 1

text: adult

characteristic: dev stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

characteristic: tissue type

text: Ancestral - Rep.1


characteristic: ENA-FIRST-PUBLIC

text: JUSTUS LIEBIG UNIVERSITY

text: public

tag: Namespace:JUSTUS LIEBIG UNIVERSITY

characteristic: collection date

text: L. monocytogenes 4b dominant clone India

characteristic: description

text: India

characteristic: geographic location (country and/or sea)

text: Milk (Cow)

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: serotype


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JUSTUS LIEBIG UNIVERSITY

characteristic: INSDC center name

text: public

text: Mumbai

text: Human (Abortion)

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Bioforsk - Norwegian Institute of Agricultural and Environmental Research

text: potato

characteristic: common name

text: Solanum tuberosum

text: Solanum tuberosum


tag: attribute

characteristic: ENA-CHECKLIST

text: JUSTUS LIEBIG UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: India

text: Human (Abortion)

text: Listeria monocytogenes

text: Listeria monocytogenes


name: Quiescent infection of human neurons with VZV 1

characteristic: ENA-FIRST-PUBLIC

text: BAR ILAN

text: public

tag: Namespace:BAR ILAN

text: Varicella-zoster virus

text: Human herpesvirus 3

text: Human herpesvirus 3

text: human nuerons infected with VZV


text: INSTITUT PASTEUR

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: JUSTUS LIEBIG UNIVERSITY

text: public

characteristic: collection date

characteristic: description

text: India

text: Animal (Abortion)

text: Listeria monocytogenes

text: Listeria monocytogenes


PARK4 59F GA1 Lane7Read1

text: Alacris Theranostics GmbH

text: public

text: PARK4 59F GA1 Lane7Read1

tag: Namespace:Alacris Theranostics GmbH

text: human

text: Female at age 59 years, affected

text: Homo sapiens

text: Homo sapiens


text: OX

text: public

characteristic: broker name

text: Streptococcus agalactiae

text: Streptococcus agalactiae


text: KAROLINSKA INSITUTET

text: public

characteristic: anonymized name

text: Blastomere, 8-cell embryo

characteristic: cell type

text: human

text: Single-cell

text: Day 3 embryo

characteristic: dev stage

text: Homo sapiens

text: Homo sapiens

text: Gene expression during the first three days of human development


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KAROLINSKA INSITUTET

characteristic: INSDC center name

text: public

text: Blastomere, 6-cell embryo

text: human

text: Single-cell

text: Day 3 embryo

text: Homo sapiens

text: Homo sapiens


text: Malaghan Institute of Medical Research

characteristic: INSDC first public

text: public

tag: Namespace:Malaghan Institute of Medical Research

text: house mouse

text: Cell lines were derived from primary s.c. tumors, mammary fat pad, circulating tumor cells, and from the lungs of mice 4-6 weeks after injection with 4T1ρ0 cells, by selection in the presence of 60 mM 6TG for 7-10 days.

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mitochondrial Genome Acquisition in 4T1 Cancer Cells

characteristic: title


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:NATIONAL VETERINARY INSTITUTE (SVA)

text: This is the recipient strain with a transconjugated plasmid from isolate 02-347

text: Enterococcus faecium

text: Enterococcus faecium

text: Recipient strain with transconjugated plasmid from E. faecium


characteristic: ENA-CHECKLIST

text: KAROLINSKA INSITUTET

text: public

characteristic: SRA accession

text: Zygote

text: human

characteristic: common name

text: Single-cell

text: Zygote

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: Submitter Id

text: This is the recipient strain with a transconjugated plasmid from isolate 00-172

text: Enterococcus faecium

text: Enterococcus faecium


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: This is the recipient strain with a transconjugated plasmid from isolate 05-28

characteristic: description

text: Enterococcus faecium

text: Enterococcus faecium


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: This is the recipient strain without any plasmid.

text: Enterococcus faecium

text: Enterococcus faecium


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: This is the recipient strain with a transconjugated plasmid from isolate 02-304

text: Enterococcus faecium

text: Enterococcus faecium


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: This is the recipient strain with a transconjugated plasmid from isolate 01-233

text: Enterococcus faecium

text: Enterococcus faecium


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: This is the recipient strain with a transconjugated plasmid from isolate 00-247

text: Enterococcus faecium

text: Enterococcus faecium


text: STPH

text: public

text: Mycobacterium tuberculosis complex bacterium

text: MTBC genetic diversity


text: STPH

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: MTB Lineages


text: MAX F. PERUTZ LABORATORIES

text: public

tag: Namespace:MAX F. PERUTZ LABORATORIES

text: Re-sequencing of Clunio marinus timing strains based on pools of field-caught individuals

text: Clunio marinus

text: Clunio marinus

text: Strain Resequencing


Jean Male WGS

text: MAX F. PERUTZ LABORATORIES

text: public

text: Jean Male WGS

text: Sequencing data used for assembly of the Clunio marinus reference genome

text: Clunio marinus

text: Clunio marinus

text: Assembly Raw Data


Jean Pool LJD2.2kb

text: MAX F. PERUTZ LABORATORIES

text: public

text: Jean Pool LJD2.2kb

text: Clunio marinus

text: Clunio marinus

text: Assembly Raw Data


Jean Pool LJD7.6kb

text: MAX F. PERUTZ LABORATORIES

text: public

text: Jean Pool LJD7.6kb

text: Clunio marinus

text: Clunio marinus

text: Assembly Raw Data


name: Mixed strain, mixed stage, normalised cDNA library

text: MAX F. PERUTZ LABORATORIES

text: public

text: Transcriptome data used for annotating the Clunio marinus reference genome

text: Clunio marinus

text: Clunio marinus

text: Transcriptome data


Jean strain, adults, RNAseq

text: MAX F. PERUTZ LABORATORIES

text: public

text: Jean strain, adults, RNAseq

text: Clunio marinus

text: Clunio marinus

text: Transcriptome data


Jean strain, larvae, RNAseq

text: MAX F. PERUTZ LABORATORIES

text: public

text: Jean strain, larvae, RNAseq

text: Clunio marinus

text: Clunio marinus

text: Transcriptome data


Por strain, larvae, RNAseq

text: MAX F. PERUTZ LABORATORIES

text: public

text: Por strain, larvae, RNAseq

text: Clunio marinus

text: Clunio marinus

text: Transcriptome data


text: IMPAM-UBA-CONICET

text: public

text: Genome sequence from tapeworm Echinococcus canadensis G7 genotype

text: Echinococcus canadensis

text: Echinococcus canadensis

text: Echinococcus canadensis genotype G7 genome


text: University of California, Irvine

text: public

tag: Namespace:University of California, Irvine

text: ArrayExpress

characteristic: broker name

text: Protocols: Samples obtained from a Costa Rican butterfly farm, Suministros Entomologicos Costarricenses, S.A Three tissues were sampled: legs (all six legs), antennae (both antennae) and mouthparts (proboscis and labial palps) Libraries were prepared using the mRNA-Seq sample preparation kit (Illumina, Inc.) using standard protocols

characteristic: individual

text: Eueides isabella

text: Eueides isabella

text: Legs

characteristic: organism part

text: Eueides isabella

text: Female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of California, Irvine

text: public

text: ArrayExpress

text: Heliconius sara

text: Heliconius sara

text: Legs

text: Heliconius sara

text: Male


text: University of California, Irvine

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Eueides isabella

text: Eueides isabella

text: Antennae

text: Eueides isabella

text: Female


text: University of California, Irvine

text: public

text: ArrayExpress

text: Heliconius sara

characteristic: organism

text: Heliconius sara

text: Antennae

text: Heliconius sara

text: Female

characteristic: title


text: University of California, Irvine

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Eueides isabella

text: Eueides isabella

text: Mouthparts

text: Eueides isabella

text: Female


characteristic: ENA-CHECKLIST

text: University of California, Irvine

text: public

characteristic: SRA accession

text: ArrayExpress

text: Heliconius sara

text: Heliconius sara

text: Mouthparts

text: Heliconius sara

text: Female


characteristic: ENA-FIRST-PUBLIC

text: University of California, Irvine

text: public

text: ArrayExpress

text: Eueides isabella

text: Eueides isabella

text: Mouthparts

text: Eueides isabella

text: Male


text: University of California, Irvine

text: public

characteristic: Submitter Id

text: ArrayExpress

text: Heliconius sara

text: Heliconius sara

text: Legs

text: Heliconius sara

text: Female


text: University of California, Irvine

text: public

text: ArrayExpress

characteristic: description

text: Eueides isabella

text: Eueides isabella

text: Legs

text: Eueides isabella

text: Male


text: University of California, Irvine

text: public

text: ArrayExpress

characteristic: broker name

text: Eueides isabella

text: Eueides isabella

text: Antennae

text: Eueides isabella

text: Male


text: University of California, Irvine

text: public

text: ArrayExpress

characteristic: individual

text: Heliconius sara

text: Heliconius sara

text: Mouthparts

text: Heliconius sara

text: Male


text: University of California, Irvine

text: public

text: ArrayExpress

text: Heliconius sara

text: Heliconius sara

text: Antennae

characteristic: organism part

text: Heliconius sara

text: Male


text: Glasgow Polyomics

text: public

tag: Namespace:Glasgow Polyomics

text: Cow

characteristic: host

text: Mycobacterium bovis

text: Mycobacterium bovis

text: Whole genome sequences of Mycobacterium bovis samples from Northern Ireland


characteristic: ENA-LAST-UPDATE

text: Glasgow Polyomics

text: public

text: Badger

text: Mycobacterium bovis

text: Mycobacterium bovis


Arsenic sand filter_Bacteria_2

characteristic: External Id

text: Eberhard-Karls-University Tuebingen

text: public

text: Arsenic sand filter_Bacteria_2

text: outflow water (filtered water)

text: metagenome

text: metagenome

text: water


Arsenic sand filter_Bacteria_3

text: Eberhard-Karls-University Tuebingen

characteristic: INSDC center name

text: public

text: Arsenic sand filter_Bacteria_3

text: used filter sand

text: metagenome

text: metagenome

text: filter sand_Red1


Arsenic sand filter_Bacteria_4

text: Eberhard-Karls-University Tuebingen

characteristic: INSDC first public

text: public

text: Arsenic sand filter_Bacteria_4

text: used filter sand

text: metagenome

text: metagenome

text: filter sand_Red2


Arsenic sand filter_Bacteria_5

text: Eberhard-Karls-University Tuebingen

text: public

text: Arsenic sand filter_Bacteria_5

text: used filter sand

text: metagenome

characteristic: organism

text: metagenome

text: filter sand_Red3


Arsenic sand filter_Bacteria_6

text: Eberhard-Karls-University Tuebingen

text: public

text: Arsenic sand filter_Bacteria_6

text: used filter sand

text: metagenome

text: metagenome

text: filter sand_Red4

characteristic: title


Arsenic sand filter_Bacteria_7

text: Eberhard-Karls-University Tuebingen

characteristic: INSDC last update

text: public

text: Arsenic sand filter_Bacteria_7

text: used filter sand

text: metagenome

text: metagenome

text: filter sand_Black


Arsenic sand filter_Bacteria_8

text: Eberhard-Karls-University Tuebingen

text: public

characteristic: INSDC status

text: Arsenic sand filter_Bacteria_8

text: used filter sand

text: metagenome

text: metagenome

text: filter sand_White


Arsenic sand filter_Bacteria_9

characteristic: ENA-CHECKLIST

text: Eberhard-Karls-University Tuebingen

text: public

text: Arsenic sand filter_Bacteria_9

text: origingal filter sand

text: metagenome

text: metagenome

text: filter sand


Arsenic sand filter_Archaea_1

text: Eberhard-Karls-University Tuebingen

text: public

characteristic: SRA accession

text: Arsenic sand filter_Archaea_1

text: inflow water (groundwater)

text: Candidatus Nitrospira defluvii

text: Candidatus Nitrospira defluvii

text: water