text: SRA-Webin

text: public

text: fruit fly

text: 18°C F1 females, replicate III (pool-size: 120)

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Austria reference population RIII


E-MTAB-1456:Cell culture 2

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text: Imperial College

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text: E-MTAB-1456:Cell culture 2

tag: Namespace:Imperial College

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text: ArrayExpress

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text: Protocols: M. smegmatis mc2 155 wild type (ATCC 700084) and M. smegmatis mc2 155 _glnR strains were used in this study. M. smegmatis was grown aerobically in Middlebrook 7H9 liquid broth (supplemented with 0.2% glycerol, 0.05% Tween 80 and 10% OADC) at 37 C, 180 rpm for 24 hours. For growth in nitrogen limiting conditions, 5 ml culture of M. smegmatis was washed twice in nitrogen free Sauton's medium (0.05% (w/v) KH2PO4, 0.05% (w/v) MgSO4, 0.2% (w/v) citric acid, 0.005% (w/v) ferric citrate, 0.2% (v/v) glycerol, 0.0001% (v/v) ZnSO4, 0.015% (v/v) Tyloxapol) and inoculated into 30 ml Sauton's nitrogen free medium, supplemented with 30mM (nitrogen non-limiting) ammonium sulphate to a starting OD600 of 0.08. Cultures were grown at 180 rpm 37 C. Growth was monitored by OD600. Ammonium ions in the culture medium were quantified using an AquaQuant Ammonium detection kit (Merck). M. smegmatis strains were grown in triplicate in nitrogen limiting conditions as stated until external nitrogen had completely depleted. Cells were immediately added to final concentration 2.5 M GTC and harvested by centrifugation. Pellets were resuspended in 1 ml TRIzol (Life Technologies) and stored at -80 C. Thawed cell/Trizol suspensions were transferred to tubes containing Zirconium beads (MP Biomedicals) and the cells lysed in a ribolyser Fastprep (Hybaid). RNA samples were chloroform extracted and RNA purified using the RNeasy kit (Qiagen) according to manufacturer's instructions.

characteristic: description

text: Mycobacterium smegmatis

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text: Mycobacterium smegmatis

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text: Mycobacterium smegmatis

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characteristic: strain or line

text: 13 hour

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text: Cell culture 2

characteristic: title

type: has member


E-MTAB-1456:Cell culture 4

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text: public

text: E-MTAB-1456:Cell culture 4

text: ArrayExpress

text: Mycobacterium smegmatis

text: Mycobacterium smegmatis

text: wild type

text: Mycobacterium smegmatis

text: mc2 155 (ATCC 700084)

text: 13 hour

text: Cell culture 4


E-MTAB-1456:Cell culture 1

text: Imperial College

text: public

text: E-MTAB-1456:Cell culture 1

text: ArrayExpress

text: Protocols: M. smegmatis mc2 155 wild type (ATCC 700084) and M. smegmatis mc2 155 _glnR strains were used in this study. M. smegmatis was grown aerobically in Middlebrook 7H9 liquid broth (supplemented with 0.2% glycerol, 0.05% Tween 80 and 10% OADC) at 37 C, 180 rpm for 24 hours. For growth in nitrogen limiting conditions, 5 ml culture of M. smegmatis was washed twice in nitrogen free Sauton's medium (0.05% (w/v) KH2PO4, 0.05% (w/v) MgSO4, 0.2% (w/v) citric acid, 0.005% (w/v) ferric citrate, 0.2% (v/v) glycerol, 0.0001% (v/v) ZnSO4, 0.015% (v/v) Tyloxapol) and inoculated into 30 ml Sauton's nitrogen free medium, supplemented with 1 mM (nitrogen limiting) ammonium sulphate to a starting OD600 of 0.08. Cultures were grown at 180 rpm 37 C. Growth was monitored by OD600. Ammonium ions in the culture medium were quantified using an AquaQuant Ammonium detection kit (Merck). M. smegmatis strains were grown in triplicate in nitrogen limiting conditions as stated until external nitrogen had completely depleted. Cells were immediately added to final concentration 2.5 M GTC and harvested by centrifugation. Pellets were resuspended in 1 ml TRIzol (Life Technologies) and stored at -80 C. Thawed cell/Trizol suspensions were transferred to tubes containing Zirconium beads (MP Biomedicals) and the cells lysed in a ribolyser Fastprep (Hybaid). RNA samples were chloroform extracted and RNA purified using the RNeasy kit (Qiagen) according to manufacturer's instructions.

text: Mycobacterium smegmatis

text: Mycobacterium smegmatis

text: wild type

text: Mycobacterium smegmatis

text: mc2 155 (ATCC 700084)

text: 13 hour

text: Cell culture 1


E-MTAB-1456:Cell culture 3

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text: public

text: E-MTAB-1456:Cell culture 3

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text: Mycobacterium smegmatis

text: Mycobacterium smegmatis

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text: Mycobacterium smegmatis

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text: 13 hour

text: Cell culture 3


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text: 22.Bacteria.sheep.5472.5 min


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characteristic: geographic location (country and/or sea)

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text: lucerne chaff

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characteristic: ENA-CHECKLIST

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text: ENVO:animal-associated habitat

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text: ENVO:animal-associated habitat

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characteristic: ENA-CHECKLIST

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text: sheep

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text: 44.Bacteria.sheep.325.4 min

text: lucerne chaff

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characteristic: ENA-CHECKLIST

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text: 38.Bacteria.sheep.325.1 min

text: lucerne chaff

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characteristic: geographic location (country and/or sea)

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characteristic: ENA-CHECKLIST

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characteristic: description

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text: ENVO:animal-associated habitat

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text: sheep

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characteristic: ENA-CHECKLIST

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text: 4.Bacteria.cow.723.2 min

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characteristic: diet

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characteristic: geographic location (country and/or sea)

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text: ENVO:animal-associated habitat

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text: sheep

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text: 16.Bacteria.sheep.5472.2 min

text: pasture

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characteristic: env feature

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text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

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text: ENVO:animal-associated habitat

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text: sheep

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characteristic: ENA-CHECKLIST

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text: 13.Bacteria.sheep.5472.1 min

text: pasture

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

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characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

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characteristic: host common name

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characteristic: taxon id

text: 13.Bacteria.sheep.5472.1 min


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 3.Bacteria.cow.723.2 min

characteristic: description

text: 3.Bacteria.cow.723.2 min

text: meadow pasture hay

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: cow

text: gut metagenome

characteristic: organism

text: y

text: GAGTTTGATCMTGGCTCAG

text: 0.1, gram

text: gut metagenome

characteristic: title

text: 3.Bacteria.cow.723.2 min


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 31.Bacteria.sheep.322.4 min

text: 31.Bacteria.sheep.322.4 min

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: GAGTTTGATCMTGGCTCAG

characteristic: reverseprimer

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id

text: 31.Bacteria.sheep.322.4 min


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

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characteristic: INSDC status

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characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 17.Bacteria.sheep.5472.3 min

characteristic: description

text: 17.Bacteria.sheep.5472.3 min

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: GAGTTTGATCMTGGCTCAG

text: 0.1, gram

text: gut metagenome

text: 17.Bacteria.sheep.5472.3 min

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 8.Protozoa rumen

text: 8.Protozoa rumen

text: meadow pasture hay

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

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characteristic: sample id

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 19.Protozoa rumen

characteristic: description

text: 19.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

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text: rumen

text: gut metagenome

text: 37.Protozoa rumen

text: 37.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

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characteristic: sample id

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characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 7.Protozoa rumen

characteristic: description

text: 7.Protozoa rumen

text: meadow pasture hay

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: cow

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

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text: rumen

text: gut metagenome

text: 27.Protozoa rumen

text: 27.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

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characteristic: sample id

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characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

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text: 30.Protozoa rumen

characteristic: description

text: 30.Protozoa rumen

text: lucerne chaff

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

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text: 0.1, gram

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characteristic: ENA-CHECKLIST

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text: 22.Protozoa rumen

text: 22.Protozoa rumen

text: pasture

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text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

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characteristic: latitude

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characteristic: INSDC status

characteristic: SRA accession

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characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

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text: 23.Protozoa rumen

characteristic: description

text: 23.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

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characteristic: title


characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

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text: 5.Protozoa rumen

text: 5.Protozoa rumen

text: meadow pasture hay

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

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characteristic: latitude

characteristic: longitude

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characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

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text: 15.Protozoa rumen

characteristic: description

text: 15.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

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characteristic: ENA-CHECKLIST

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text: meadow pasture hay

characteristic: diet

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text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

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characteristic: sample id

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characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

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characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

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text: 33.Protozoa rumen

characteristic: description

text: 33.Protozoa rumen

text: lucerne chaff

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

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characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

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text: 11.Protozoa rumen

text: meadow pasture hay

characteristic: diet

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text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

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characteristic: sample id

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characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 40.Protozoa rumen

characteristic: description

text: 40.Protozoa rumen

text: lucerne chaff

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

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text: rumen

text: gut metagenome

text: 25.Protozoa rumen

text: 25.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

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characteristic: latitude

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text: gut metagenome

text: y

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text: 0.1, gram

characteristic: sample id

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characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 1.Protozoa rumen

characteristic: description

text: 1.Protozoa rumen

text: meadow pasture hay

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: cow

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

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characteristic: title


characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

text: public

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text: rumen

text: gut metagenome

text: 28.Protozoa rumen

text: 28.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

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characteristic: sample id

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characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 10.Protozoa rumen

characteristic: description

text: 10.Protozoa rumen

text: meadow pasture hay

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: cow

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

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characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

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text: 12.Protozoa rumen

text: 12.Protozoa rumen

text: meadow pasture hay

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

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characteristic: latitude

characteristic: longitude

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characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 41.Protozoa rumen

characteristic: description

text: 41.Protozoa rumen

text: lucerne chaff

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

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text: 0.1, gram

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characteristic: title


characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

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text: rumen

text: gut metagenome

text: 35.Protozoa rumen

text: 35.Protozoa rumen

text: lucerne chaff

characteristic: diet

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text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

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characteristic: INSDC center name

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characteristic: Submitter Id

characteristic: altitude

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text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 26.Protozoa rumen

characteristic: description

text: 26.Protozoa rumen

text: lucerne chaff

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

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text: 0.1, gram

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characteristic: ENA-CHECKLIST

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text: CCME-COLORADO

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text: rumen

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text: 48.Protozoa rumen

text: 48.Protozoa rumen

text: lucerne chaff

characteristic: diet

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text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

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characteristic: host common name

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characteristic: latitude

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characteristic: INSDC status

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characteristic: altitude

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text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

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text: 32.Protozoa rumen

characteristic: description

text: 32.Protozoa rumen

text: lucerne chaff

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

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text: 0.1, gram

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characteristic: ENA-CHECKLIST

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text: 20.Protozoa rumen

text: 20.Protozoa rumen

text: pasture

characteristic: diet

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text: ENVO:animal-associated habitat

characteristic: env biome

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characteristic: env feature

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characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

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characteristic: host common name

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characteristic: INSDC status

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characteristic: altitude

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text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 9.Protozoa rumen

characteristic: description

text: 9.Protozoa rumen

text: meadow pasture hay

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

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characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 45.Protozoa rumen

text: 45.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 43.Protozoa rumen

characteristic: description

text: 43.Protozoa rumen

text: lucerne chaff

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 34.Protozoa rumen

text: 34.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 14.Protozoa rumen

characteristic: description

text: 14.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 6.Protozoa rumen

text: 6.Protozoa rumen

text: meadow pasture hay

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 21.Protozoa rumen

characteristic: description

text: 21.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 29.Protozoa rumen

text: 29.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 46.Protozoa rumen

characteristic: description

text: 46.Protozoa rumen

text: lucerne chaff

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 44.Protozoa rumen

text: 44.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 42.Protozoa rumen

characteristic: description

text: 42.Protozoa rumen

text: lucerne chaff

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 38.Protozoa rumen

text: 38.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 18.Protozoa rumen

characteristic: description

text: 18.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 4.Protozoa rumen

text: 4.Protozoa rumen

text: meadow pasture hay

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 16.Protozoa rumen

characteristic: description

text: 16.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 39.Protozoa rumen

text: 39.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 24.Protozoa rumen

characteristic: description

text: 24.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 47.Protozoa rumen

text: 47.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 13.Protozoa rumen

characteristic: description

text: 13.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 36.Protozoa rumen

text: 36.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 3.Protozoa rumen

characteristic: description

text: 3.Protozoa rumen

text: meadow pasture hay

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: cow

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: gut metagenome

text: 31.Protozoa rumen

text: 31.Protozoa rumen

text: lucerne chaff

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: sheep

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: y

characteristic: public

text: 0.1, gram

characteristic: sample id

characteristic: sample name

text: gut metagenome

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

text: gut metagenome

characteristic: common name

characteristic: depth

text: 17.Protozoa rumen

characteristic: description

text: 17.Protozoa rumen

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: gut metagenome

characteristic: organism

text: y

text: 0.1, gram

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

text: public

text: n

text: rumen

text: meadow pasture hay

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: environmental samples

text: y

characteristic: public

text: GCGGTGTGTGCAAGGAGC

characteristic: reverseprimer

text: 50 g

characteristic: sample id

characteristic: sample name

text: environmental samples

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: S.ARC.PCBB.a

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

characteristic: depth

text: S.ARC.PCBB.a

characteristic: description

text: S.ARC.PCBB.a

text: pasture

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: sheep

text: environmental samples

characteristic: organism

text: y

text: GCGGTGTGTGCAAGGAGC

text: 50 g

text: S.ARC.PCBB.a

text: environmental samples

text: S.ARC.PCBB.a

characteristic: title

text: S.ARC.PCBB.a


characteristic: ENA-CHECKLIST

text: CCME-COLORADO

text: public

text: C.ARC.PCQI.a

text: n

text: rumen

text: C.ARC.PCQI.a

text: C.ARC.PCQI.a

text: meadow pasture hay

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:animal-associated habitat

characteristic: env matter

text: GAZ:New Zealand

characteristic: geographic location (country and/or sea)

text: cow

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: environmental samples

text: y

characteristic: public

text: GCGGTGTGTGCAAGGAGC

characteristic: reverseprimer

text: 50 g

characteristic: sample id

text: C.ARC.PCQI.a

characteristic: sample name

text: environmental samples

characteristic: taxon id

text: C.ARC.PCQI.a

text: C.ARC.PCQI.a


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: C.ARC.QIAG.a

characteristic: anonymized name

text: n

text: rumen

characteristic: collection date

characteristic: depth

text: C.ARC.QIAG.a

characteristic: description

text: C.ARC.QIAG.a

text: meadow pasture hay

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: GAZ:New Zealand

text: cow

text: environmental samples

characteristic: organism

text: y

text: GCGGTGTGTGCAAGGAGC

text: 50 g

text: C.ARC.QIAG.a

text: environmental samples

text: C.ARC.QIAG.a

characteristic: title

text: C.ARC.QIAG.a