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text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Bod1_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Bod1_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Bod1l_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Bod1l_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Bptf_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Bptf_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Brd2_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Brd2_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Brd3_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Brd3_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: no sample

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Klf5_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Klf5_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Nanog_1 ES

characteristic: sample description

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Nanog_2 ES

text: Mus musculus

characteristic: title


text: Embryonic stem cells

characteristic: ArrayExpress-CellType

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Pou5f1_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Pou5f1_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Tcf3_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Tcf3_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Myc_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Myc_4 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Zfp281_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Zfp281_4 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Sall1_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Sall1_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Sall4_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Sall4_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Esrrb_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Esrrb_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Cnot1_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Cnot1_3 ES

characteristic: sample description

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Cnot2_1 ES

text: Mus musculus

characteristic: title


text: Embryonic stem cells

characteristic: ArrayExpress-CellType

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Cnot2_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Cnot3_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Cnot3_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Iws1_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Iws1_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Jmjd1c_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Jmjd1c_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Med12_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Med12_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Med14_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Med14_4 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mll2_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mll2_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Ptch2_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Ptch2_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Rnf2_1 ES

characteristic: sample description

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Rnf2_2 ES

text: Mus musculus

characteristic: title


text: Embryonic stem cells

characteristic: ArrayExpress-CellType

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Sars_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Sars_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Shfm1_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Shfm1_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Skp1a_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Skp1a_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Uba1_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Uba1_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Ep300_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Ep300_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Fbxl7_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Fbxl7_4 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Smarcc1_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Smarcc1_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Wnt3a_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Wnt3a_4 ES

characteristic: sample description

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Brd4_3 ES

text: Mus musculus

characteristic: title


text: Embryonic stem cells

characteristic: ArrayExpress-CellType

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Brd4_4 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Ctnnb1_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Ctnnb1_4 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Ep400_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Ep400_4 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Fam60a_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Fam60a_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Kdm6b_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Kdm6b_3 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Max_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Max_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Snw1_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Snw1_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Zfp423_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Zfp423_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Ctr9_1 ES

characteristic: sample description

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Ctr9_2 ES

text: Mus musculus

characteristic: title


text: Embryonic stem cells

characteristic: ArrayExpress-CellType

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Wdr82_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Wdr82_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Rad21_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Rad21_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Smc1a_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Smc1a_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Rluc_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Rluc_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: ptbp1_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: ptbp1_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Thoc2_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Thoc2_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Tip60_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Tip60_2 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Trrap1_1 ES

text: Mus musculus


text: Embryonic stem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Trrap1_2 ES

characteristic: sample description

text: Mus musculus


text: Epistem cells

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Klf5_1 EpiSC

text: Mus musculus

characteristic: title


text: Epistem cells

characteristic: ArrayExpress-CellType

text: embryonic cell line

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Klf5_2 EpiSC

text: Mus musculus


text: Epistem cells

text: embryonic cell line

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Nanog_1 EpiSC

text: Mus musculus


text: Epistem cells

text: embryonic cell line

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Nanog_2 EpiSC

text: Mus musculus


text: Epistem cells

text: embryonic cell line

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Pou5f1_1 EpiSC

text: Mus musculus


text: Epistem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Pou5f1_2 EpiSC

text: Mus musculus


text: Epistem cells

text: embryonic cell line

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Tcf3_1 EpiSC

text: Mus musculus


text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: no sample

text: Mus musculus


text: Yeast

characteristic: ArrayExpress-Phenotype

text: Saccharomyces cerevisiae

characteristic: External Id

text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: Sample homozygous for drosha, allele sa191. Total RNA from a 5 dpf zebrafish embryo treated with DNase plus ERCC spike mix (Ambion).

text: Danio rerio

text: mixed

characteristic: strain


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: Sample heterozygous for drosha, allele sa191. Total RNA from a 5 dpf zebrafish embryo treated with DNase plus ERCC spike mix (Ambion).

text: Danio rerio

text: mixed


text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: Sample wild-type for drosha, allele sa191.Total RNA from a 5 dpf zebrafish embryo treated with DNase plus ERCC spike mix (Ambion).

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: title


text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Sample homozygous for dicer, allele sa9205. Total RNA from a 5 dpf zebrafish embryo treated with DNase plus ERCC spike mix (Ambion).

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Sample heterozygous for dicer, allele sa9205. Total RNA from a 5 dpf zebrafish embryo treated with DNase plus ERCC spike mix (Ambion).

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: Sample wild-type for dicer, allele sa9205. Total RNA from a 5 dpf zebrafish embryo treated with DNase plus ERCC spike mix (Ambion).

text: Danio rerio

text: mixed

characteristic: strain


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: Sample homozygous for dgcr8, allele sa223. Total RNA from a 5 dpf zebrafish embryo treated with DNase plus ERCC spike mix (Ambion).

text: Danio rerio

text: mixed


text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: Sample heterozygous for dgcr8, allele sa223. Total RNA from a 5 dpf zebrafish embryo treated with DNase plus ERCC spike mix (Ambion).

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: Sample wild-type for dgcr8, allele sa223. Total RNA from a 5 dpf zebrafish embryo treated with DNase plus ERCC spike mix (Ambion).

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Yuan

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: porcine ovary

characteristic: tissue lib

text: porcine ovarian methylome 1


characteristic: ENA-LAST-UPDATE

text: Yuan

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: porcine ovary

text: porcine ovarian methylome 2


characteristic: External Id

text: Yuan

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: porcine ovary

text: porcine ovarian methylome 3


E-MTAB-4107:Sample 1

characteristic: INSDC center name

text: public

text: E-MTAB-4107:Sample 1

tag: Namespace:University of Helsinki: Institute of Biotechnology and Department of Food Hygiene and Environmental Health

text: ArrayExpress

characteristic: broker name

text: Protocols: Microaerobic condition, modified (without malic acid, cellulose and bromocresol green) MLD medium (Cavin JF et al., Appl Environ Microbiol 1989), containing either glucose, ribose or xylose as a sole carbon source (50mM) in three replicates, samples were taken at three time points 20 h, 24 h and 30 h Rneasy Plant Mini Kit (Qiagen. Germany) rRNA removing (Ribo-Zero Magnetic Kit (bacteria), Epicentre); Library construction by Ovation RNA-seq System V2, NuGen.

characteristic: description

text: Glucose

characteristic: growth condition

unit: hour

characteristic: growth time

text: Lactobacillus oligofermentans DSM 15707 = LMG 22743

characteristic: replicate

text: Sample 1


E-MTAB-4107:Sample 10

text: University of Helsinki: Institute of Biotechnology and Department of Food Hygiene and Environmental Health

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4107:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: Ribose

text: Sample 10


E-MTAB-4107:Sample 11

characteristic: INSDC first public

text: public

text: E-MTAB-4107:Sample 11

text: ArrayExpress

text: Ribose

characteristic: organism

text: Sample 11


E-MTAB-4107:Sample 12

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4107:Sample 12

text: ArrayExpress

text: Ribose

text: Sample 12

characteristic: title


E-MTAB-4107:Sample 13

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4107:Sample 13

text: ArrayExpress

text: Ribose

text: Sample 13


E-MTAB-4107:Sample 14

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4107:Sample 14

text: ArrayExpress

text: Ribose

text: Sample 14


E-MTAB-4107:Sample 15

characteristic: External Id

text: public

text: E-MTAB-4107:Sample 15

text: ArrayExpress

text: Ribose

text: Sample 15


E-MTAB-4107:Sample 16

characteristic: INSDC center name

text: public

text: E-MTAB-4107:Sample 16

text: ArrayExpress

text: Xylose

text: Sample 16


E-MTAB-4107:Sample 17

text: public

text: E-MTAB-4107:Sample 17

text: ArrayExpress

characteristic: broker name

text: Xylose

text: Sample 17


E-MTAB-4107:Sample 18

text: public

text: E-MTAB-4107:Sample 18

text: ArrayExpress

characteristic: description

text: Xylose

text: Sample 18


E-MTAB-4107:Sample 19

text: public

text: E-MTAB-4107:Sample 19

text: ArrayExpress

text: Xylose

characteristic: growth condition

text: Sample 19


E-MTAB-4107:Sample 2

text: public

text: E-MTAB-4107:Sample 2

text: ArrayExpress

text: Glucose

characteristic: growth time

text: Sample 2


E-MTAB-4107:Sample 20

text: public

text: E-MTAB-4107:Sample 20

text: ArrayExpress

text: Xylose

characteristic: replicate

text: Sample 20


E-MTAB-4107:Sample 21

characteristic: INSDC last update

text: public

text: E-MTAB-4107:Sample 21

text: ArrayExpress

text: Xylose

text: Sample 21


E-MTAB-4107:Sample 22

text: public

characteristic: INSDC status

text: E-MTAB-4107:Sample 22

text: ArrayExpress

text: Xylose

text: Sample 22


E-MTAB-4107:Sample 23

text: public

characteristic: SRA accession

text: E-MTAB-4107:Sample 23

text: ArrayExpress

text: Xylose

text: Sample 23


E-MTAB-4107:Sample 3

text: public

text: E-MTAB-4107:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: Glucose

text: Sample 3


E-MTAB-4107:Sample 4

characteristic: INSDC first public

text: public

text: E-MTAB-4107:Sample 4

text: ArrayExpress

text: Glucose

text: Sample 4


E-MTAB-4107:Sample 5

text: public

text: E-MTAB-4107:Sample 5

text: ArrayExpress

text: Glucose

characteristic: organism

text: Sample 5


E-MTAB-4107:Sample 6

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4107:Sample 6

text: ArrayExpress

text: Glucose

text: Sample 6


E-MTAB-4107:Sample 7

text: public

text: E-MTAB-4107:Sample 7

text: ArrayExpress

text: Glucose

text: Sample 7

characteristic: title


E-MTAB-4107:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4107:Sample 8

text: ArrayExpress

text: Ribose

text: Sample 8


E-MTAB-4107:Sample 9

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4107:Sample 9

text: ArrayExpress

text: Ribose

text: Sample 9


characteristic: External Id

text: BILS

text: public

text: gut metagenome

text: gut metagenome

text: The impact of high fat and bilberry diet on rat microbiota and health


text: BILS

characteristic: INSDC center name

text: public

text: gut metagenome

text: gut metagenome

text: Bacteria-Immune System Interactions in Gut Homeostasis


text: Saint Francis University

text: public

tag: Namespace:Saint Francis University

text: Partial 16S rRNA sequences

text: uncultured organism

text: uncultured organism


text: John Innes Centre

text: public

tag: Namespace:John Innes Centre

text: domesticated barley

characteristic: common name

text: FOMA

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

type: has member


text: John Innes Centre

text: public

text: domesticated barley

text: EMS mutant cer-q-295, Flow sorted chromosome 2H

characteristic: description

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: John Innes Centre

text: public

text: domesticated barley

text: EMS mutant cer-q-297, Flow sorted chromosome 2H

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: John Innes Centre

text: public

text: domesticated barley

text: EMS mutant cer-q-310, Flow sorted chromosome 2H

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: John Innes Centre

text: public

text: domesticated barley

text: EMS mutant cer-q-327, Flow sorted chromosome 2H

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: John Innes Centre

text: public

text: domesticated barley

text: EMS mutant cer-q-334, Flow sorted chromosome 2H

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: John Innes Centre

text: public

text: domesticated barley

text: EMS mutant cer-q-365, Flow sorted chromosome 2H

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: UNIVERSITY OF TECHNOLOGY, SYDNEY

text: public

tag: Namespace:UNIVERSITY OF TECHNOLOGY, SYDNEY

text: metagenomes

text: metagenomes


text: CAM

text: public

text: metagenome

text: metagenome


text: FIOCRUZ-MG

text: public

text: Rhodococcus rhodochrous

text: Rhodococcus rhodochrous

text: Rhodococcus rhodochrous


text: UPPSALA UNIVERSITET

text: public

tag: Namespace:UPPSALA UNIVERSITET

text: human

text: Homo sapiens

text: Homo sapiens


text: KU Leuven

text: public

tag: Namespace:KU Leuven

text: human

text: Homo sapiens

text: Homo sapiens


text: John Innes Centre

text: public

text: bread wheat

text: Wheat, flow sorted chromosome 5D. Cultivar Chancellor.

text: Triticum aestivum

text: Triticum aestivum


text: John Innes Centre

text: public

text: bread wheat

text: Wheat, flow sorted chromosome 5D. Cultivar Federation.

text: Triticum aestivum

text: Triticum aestivum


text: John Innes Centre

text: public

text: bread wheat

text: Wheat, flow sorted chromosome 5D. Near-isogenic line derived from cultivar Ulka backcrossed three times to Federation. Resistance gene Pm2 present.

text: Triticum aestivum

text: Triticum aestivum


text: Streptococcus pyogenes

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: strain


text: University Hospital Regensburg

characteristic: INSDC last update

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 65

text: metagenome

text: metagenome

text: A new perspective to microbiome profiling: adjusting differences in microbial load by spike-in bacteria


text: University Hospital Regensburg

text: public

characteristic: INSDC status

text: mouse gut microbiome - SCML Validation Experiment - Sample 66

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

characteristic: SRA accession

text: mouse gut microbiome - SCML Validation Experiment - Sample 67

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

characteristic: Submitter Id

text: mouse gut microbiome - SCML Validation Experiment - Sample 68

text: metagenome

text: metagenome


text: University Hospital Regensburg

characteristic: INSDC first public

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 69

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 70

text: metagenome

characteristic: organism

text: metagenome


characteristic: ENA-CHECKLIST

text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 71

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 72

text: metagenome

text: metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 73

text: metagenome

text: metagenome


characteristic: ENA-LAST-UPDATE

text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 74

text: metagenome

text: metagenome


characteristic: External Id

text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 75

text: metagenome

text: metagenome


text: University Hospital Regensburg

characteristic: INSDC center name

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 76

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 77

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 78

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 79

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 80

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 81

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 82

text: metagenome

text: metagenome

text: A new perspective to microbiome profiling: adjusting differences in microbial load by spike-in bacteria


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 83

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 84

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 85

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 86

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 89

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 90

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 91

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 92

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 94

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 95

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 96

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 97

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 98

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 99

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Sample 100

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Spike - Control Sample

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: mouse gut microbiome - SCML Validation Experiment - Spike only - Control Sample

text: metagenome

text: metagenome

text: A new perspective to microbiome profiling: adjusting differences in microbial load by spike-in bacteria


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 2, Sampling Timepoint before allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 1, Sampling Timepoint before allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 1, Sampling Timepoint 1 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 1, Sampling Timepoint 2 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 1, Sampling Timepoint 3 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 2, Sampling Timepoint 1 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 2, Sampling Timepoint 2 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 2, Sampling Timepoint 3 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 3, Sampling Timepoint 1 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 3, Sampling Timepoint 2 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 3, Sampling Timepoint 3 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 4, Sampling Timepoint before allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 4, Sampling Timepoint 1 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 4, Sampling Timepoint 2 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 5, Sampling Timepoint before allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 5, Sampling Timepoint 1 after allegeneic stem cell transplantation

text: metagenome

text: metagenome


text: University Hospital Regensburg

text: public

text: Human Gut Microbiome, Patient 5, Sampling Timepoint 3 after allegeneic stem cell transplantation

text: metagenome

text: metagenome

text: A new perspective to microbiome profiling: adjusting differences in microbial load by spike-in bacteria


E-MTAB-4146:CantonS (cs)

text: EMBL

text: public

text: E-MTAB-4146:CantonS (cs)

text: 0-12 h

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: Protocols: Wildtype Drosophila melanogaster (Oregon R) flies were grown in population cages at 25 degrees. Three rounds of 0-1hr prelays were performed to stimulate egg release from the females. Embryos were collected for 12 hours. The collected embryos were dechorionated using 50% bleach and fixed in 10 ml cross-linking solution (50 mM HEPES pH 8.0, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 1.8 % formaldehyde, pH 8.0) with 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. A small number of embryos from each collection were set aside for staging. Approximately 1g of Drosophila embryos were resuspended in 15ml ice-cold 0.1% Triton X-100 in PBS with protease inhibitors (PIs) and dounced 20x with loose pestle on ice, followed by centrifugation at 400g for 1min at 4 degrs. The supernatant was transferred to a fresh tube and centrifuged at 1100g for 10min at 4 degrs. The pellet was resuspended in 15ml ice-cold Cell lysis buffer with PIs (5 mM HEPES pH 8.0, 85 mM KCl, 0.5% NP40) and dounced 20x with tight pestle. Two equal aliquots were transferred into 15ml falcon tubes and centrifuged at 2000g for 4min at 4 degrs. The pellets consisting of nuclei were resuspended in 1ml of ice-cold Nuclear Lysis Buffer with PIs (50 mM HEPES pH 8.0, 10 mM EDTA, 0.5% N-laurylsarcosine) and incubated for 20min at RT. 1ml ice-cold Nuclear Lysis Buffer with PIs was added to each tube and sonicated using the bioruptor for 15 cycles (15s on/ 15s off, at 4 degrs). Chromatin was then transferred to 1.5 ml-eppendorf tubes and centrifuged at 14000 rpm for 10 min at 4 degrs. Finally, supernatants were pooled, aliquoted and frozen in liquid nitrogen. Chromatin (50 ug of DNA) was brought to RIPA conditions (140mM NaCl / 10mM Tris-HCl pH8,0 / 1mM EDTA / 1% TritonX100 / 0,1% SDS / 0,1% sodium deoxycholate, 1mM PMSF) and incubated with anti-Opbp antibody at 4 degrs on a rotary shaker overnight. The antibody/antigen complexes were precipitated with 40 ul protein G sepharose at 4 degrs for 3 hrs and washed 1x with RIPA buffer, 3x with RIPA buffer with 500 mM NaCl. Sepharose was resuspended in TE with 0.5% SDS, treated with RNase A for 30 min and protease K over night, incubated at 65 degr for 6 hours and phenol chloroform extracted. Solexa libraries were prepared according to manufacturers recommendations with small modifications. In short, 1-10ng of purified, RNase treated, and reverse cross-linked genomic DNA was end-repaired and terminal adenosine residues were added using the NEBNext reagents. Custom-made indexed adapters were ligated, after which the material was size selected at ~200-600 bp with Ampure XP beads (Beckman Coulter). PCR amplification was performed using PE1.0 and PE2.0 primers (custom-made) for 12 cycles for Input samples and 14 to 15 cycles for IP-ed samples using the Q5 Hot Start HiFi PCR Master Mix (NEB). The PCR-amplified library was purified using Ampure XP beads and its quality was assessed on a Bioanalyzer 2100 system (Agilent).

text: mixed

characteristic: developmental stage

text: egg laying

characteristic: initial time point

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: OregonR

text: CantonS (cs)


E-MTAB-4143:Sample 1

text: UZH

characteristic: INSDC last update

text: public

text: E-MTAB-4143:Sample 1

text: ArrayExpress

text: embryonic cell

characteristic: cell type

text: zebrafish

text: Protocols: Single embryos of appropriate stages were incubated in 30 l alkaline lysis buffer (25 mM NaOH, 0.2 mM disodium EDTA, pH 12.0) at 95C for 30 min (Mosimann et al., 2013). The samples were then quenched on ice and neutralized with 30 l Tris-HCl (40mM, pH 5.0). Debris was removed by spinning down the DNA samples at 5000 x g for 5 min and transferring the supernatant to fresh tubes. The supernatant was kept at 4C for short-term or at 20C for long-term storage. The sgRNA target sites were amplified with flanking primers designed for the individual genes to amplify 350-500 bp using the GoTaq G2 Green Master Mix (Promega). Reactions were performed in a total volume of 25 l according to the manufacturers instructions using 1 l template DNA. Annealing temperature and elongation time were adjusted to individual primers and product length according to manufacturers instructions. The amplicon PCR products were purified, pooled and barcoded (by sample; up to 6 embryos per amplicon) and libraries were constructed according to standard Illumina (MiSeq) protocols.

characteristic: description

characteristic: individual

text: Danio rerio

text: Danio rerio

text: Danio rerio

text: Sample 1


E-MTAB-4143:Sample 2

text: UZH

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4143:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: embryonic cell

text: zebrafish

text: Danio rerio

text: Danio rerio

text: Danio rerio

text: Sample 2


E-MTAB-4143:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

text: E-MTAB-4143:Sample 3

text: ArrayExpress

text: embryonic cell

text: zebrafish

text: Danio rerio

characteristic: organism

text: Danio rerio

text: Danio rerio

text: Sample 3

characteristic: title


E-MTAB-4143:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

text: public

text: E-MTAB-4143:Sample 4

text: ArrayExpress

text: embryonic cell

text: zebrafish

text: Danio rerio

text: Danio rerio

text: Danio rerio

text: Sample 4


E-MTAB-4143:Sample 5

text: UZH

text: public

text: E-MTAB-4143:Sample 5

text: ArrayExpress

characteristic: broker name

text: embryonic cell

text: zebrafish

characteristic: common name

text: Danio rerio

text: Danio rerio

text: Danio rerio

text: Sample 5


E-MTAB-4143:Sample 6

text: UZH

characteristic: INSDC last update

text: public

text: E-MTAB-4143:Sample 6

text: ArrayExpress

text: embryonic cell

text: zebrafish

text: Danio rerio

text: Danio rerio

text: Danio rerio

text: Sample 6


text: TGAC

text: public

text: Desulfovibrio vulgaris str. Hildenborough


text: public

tag: Namespace:Max Planck Institute for the Science of Human History

text: Yersinia pestis

text: Yersinia pestis


text: Max Planck Institute for the Science of Human History

text: public

text: Yersinia pestis

text: Yersinia pestis


text: University of Arizona

text: public

tag: Namespace:University of Arizona

unit: month

characteristic: age

text: red jungle fowl

characteristic: breed

text: ArrayExpress

text: chicken

text: Protocols: The source of the RNA was a variety of red jungle fowl tissues. Total RNA was extracted according to the Qiagen miRNAeasy protocol. Small RNAseq libraries were constructed according to the Illumina TruSeq small RNA protocol.

text: adult

characteristic: developmental stage

text: Gallus gallus

text: Gallus gallus

text: adrenal gland

characteristic: organism part

text: Gallus gallus

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

characteristic: strain


characteristic: ENA-CHECKLIST

text: University of Arizona

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: red jungle fowl

text: ArrayExpress

text: chicken

characteristic: description

text: adult

text: Gallus gallus

text: Gallus gallus

text: adipose

text: Gallus gallus

text: male

text: frozen specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Arizona

characteristic: INSDC center name

text: public

text: red jungle fowl

text: ArrayExpress

text: chicken

text: adult

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: adipose

text: Gallus gallus

text: female

text: frozen specimen

characteristic: title


text: University of Arizona

characteristic: INSDC last update

text: public

characteristic: age

text: red jungle fowl

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

text: adult

characteristic: developmental stage

text: Gallus gallus

text: Gallus gallus

text: cerebrum

text: Gallus gallus

text: male

text: frozen specimen