characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: Influenza A virus (A/England/05100298/2010(H1N1))

text: OM

text: Influenza A Virus A/England/05100298/2010 Sequence


Donor1 time point 2

status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Donor1 time point 2

tag: Namespace:CE-M-M-, RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

characteristic: Submitter Id

text: granulocytes

characteristic: cell type

text: human

characteristic: common name

text: Granulocytes isolated using Ficoll density centrifugation method from fresh blood drawn from a healthy donor

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: tissue type

text: Donor1 time point 2

characteristic: title


Donor2 time point 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CE-M-M-, RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

text: public

text: Donor2 time point 1

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: blood

text: Donor2 time point 1


Donor2 time point 2

characteristic: ENA-LAST-UPDATE

text: public

text: Donor2 time point 2

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: blood

text: Donor2 time point 2


Donor3 time point 1

characteristic: External Id

text: public

text: Donor3 time point 1

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: female

text: blood

text: Donor3 time point 1


Donor3 time point 2

characteristic: INSDC center name

text: public

text: Donor3 time point 2

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: female

text: blood

text: Donor3 time point 2


text: SC

characteristic: INSDC first public

text: public

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: Influenza A virus (A/England/343/2010(H1N1))

characteristic: passage history

characteristic: segment

characteristic: serotype

characteristic: strain

text: Influenza A Virus A/England/343/2010 Sequence


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: Liverpool

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/01580005/2010(H1N1))

characteristic: organism

text: OM

text: Influenza A Virus A/England/01580005/2010 Sequence


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/690/2010(H1N1))

text: OM

text: Influenza A Virus A/England/690/2010 Sequence

characteristic: title


text: SC

characteristic: INSDC first public

text: public

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: Influenza A virus (A/England/05120003/2010(H1N1))

text: OM

text: Influenza A Virus A/England/05120003/2010 Sequence


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: United Kingdom

text: Liverpool

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/01220741/2010(H1N1))

text: OM

characteristic: passage history

characteristic: segment

characteristic: serotype

characteristic: strain

text: Influenza A Virus A/England/01220741/2010 Sequence


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: EBLO

characteristic: isolation source host associated

text: Influenza A virus (A/England/WTSI1783/2010(H1N1))

characteristic: organism

text: OM

text: Influenza A Virus A/England/WTSI1783/2010 Sequence


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: United Kingdom:London

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

text: Homo sapiens

text: A

text: Influenza A virus (A/England/05100297/2010(H1N1))

text: OM

text: Influenza A Virus A/England/05100297/2010 Sequence

characteristic: title


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: EBLO

text: Influenza A virus (A/England/00380710/2010(H1N1))

text: OM

characteristic: passage history

characteristic: segment

text: Influenza A Virus A/England/00380710/2010 Sequence


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom:London

characteristic: geographic location (country and/or sea)

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/717/2010(H1N1))

text: OM

characteristic: serotype

characteristic: strain

text: Influenza A Virus A/England/717/2010 Sequence


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/10740658/2011(H1N1))

characteristic: organism

text: OM

text: Influenza A Virus A/England/10740658/2011 Sequence


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: Influenza A virus (A/England/374/2010(H1N1))

text: OM

text: Influenza A Virus A/England/374/2010 Sequence

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: Influenza A virus (A/England/04860560/2010(H1N1))

text: OM

characteristic: passage history

characteristic: segment

text: Influenza A Virus A/England/04860560/2010 Sequence


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/10740579/2010(H1N1))

text: OM

characteristic: serotype

characteristic: strain

text: Influenza A Virus A/England/10740579/2010 Sequence


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: Liverpool

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/245/2011(H1N1))

characteristic: organism

text: OM

text: Influenza A Virus A/England/245/2010 Sequence


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/01180016/2009(H1N1))

text: OM

text: Influenza A Virus A/England/01180016/2010 Sequence

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/10740693/2011(H1N1))

text: OM

characteristic: passage history

characteristic: segment

text: Influenza A Virus A/England/10740693/2011 Sequence


text: CARDIFF UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:CARDIFF UNIVERSITY

characteristic: isolate

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Whole genome sequencing of industrial Pseudomonas aeruginosa isolates


characteristic: ENA-CHECKLIST

text: CARDIFF UNIVERSITY

text: public

text: TSB Bead DWL Pool 1

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: CARDIFF UNIVERSITY

text: public

text: TSB 7

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 2.5% 6

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 10% 5

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 2.2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 15% 1

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: TSB Bead DWL Pool 2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


Donor4 time point 1

text: CE-M-M-, RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

text: public

text: Donor4 time point 1

text: granulocytes

characteristic: cell type

text: human

characteristic: common name

text: Primary granulocytes isolated using Ficoll gradient centrifugation method from fresh blood of a healthy donor

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: blood

characteristic: tissue type

text: Donor4 time point 1


Donor6 time point 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Donor6 time point 2

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: blood

text: Donor6 time point 2

characteristic: title


Donor6 time point 3

characteristic: INSDC center name

text: public

text: Donor6 time point 3

characteristic: Submitter Id

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: blood

text: Donor6 time point 3


Donor7 time point 1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Donor7 time point 1

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: female

text: blood

text: Donor7 time point 1


Donor1 time point 1

text: public

characteristic: INSDC status

text: Donor1 time point 1

text: granulocytes

text: human

text: Granulocytes isolated using Ficoll density centrifugation method from fresh blood drawn from a healthy donor

text: Homo sapiens

text: Homo sapiens

text: male

text: blood

text: Donor1 time point 1


characteristic: ENA-CHECKLIST

text: CARDIFF UNIVERSITY

text: public

text: A. baumannii isolate of clinical origin collected in Tamil Nadu, India, in 2005.

text: India

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Clinical sample, endotracheal aspirate

characteristic: isolation source

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: A. baumannii CHI-45-1


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: Pristionchus pacificus

characteristic: organism

text: Pristionchus pacificus

text: Ppa Gene gain and loss

type: has member


text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: Pristionchus pacificus

text: Pristionchus pacificus

text: Ppa Gene gain and loss


Donor1 time point 3

text: public

text: Donor1 time point 3

text: granulocytes

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: blood

text: Donor1 time point 3


Donor2 time point 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Donor2 time point 3

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: blood

characteristic: tissue type

text: Donor2 time point 3


text: CARDIFF UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: title


characteristic: ENA-CHECKLIST

text: CARDIFF UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ATCC 12903

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: CARDIFF UNIVERSITY

text: public

text: TSB 9

characteristic: isolate

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 2.5% 8

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 10% 7

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 4

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 15% 3

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: TSB 2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 2.5% 1

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 2.5% 9

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 10% 8

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 5

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 15% 4

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 1.1

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 7

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 15% 6

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: TSB Bead Pool 1

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: ATCC 9027

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: TSB 5

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 2.5% 4

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 10% 3

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 1.2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 8

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 15% 7

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 15.211 Gb

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: TSB Bead Pool 2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: TSB 6

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 2.5% 5

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 10% 4

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 2.1

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 9

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Hvidovre Hospital

text: public

tag: Namespace:Hvidovre Hospital

characteristic: collection date

text: Denmark

characteristic: geographic location (country and/or sea)

text: Enterococcus faecium

text: Enterococcus faecium


text: public

tag: Namespace:Department Biochemical and Microbial Technology

text: Rhodococcus sp.

text: Rhodococcus sp. 311R

text: Rhodococcus sp. 311R

characteristic: strain

text: Rhodococcus sp. 311R


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/01180017/2010(H1N1))

text: OM

characteristic: passage history

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/01180017/2010 Sequence


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom:London

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/688/2010(H1N1))

text: OM

text: Influenza A Virus A/England/688/2010 Sequence

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IINFACTS

text: public

characteristic: INSDC status

text: Paolo De Marco

characteristic: collected by

characteristic: culture collection

text: Portugal

characteristic: geographic location (country and/or sea)

text: estuary sediments

characteristic: isolation source

text: 41.139783 N, 8.664167 W

characteristic: lat lon

text: Rhodococcus sp. RD6.2

characteristic: organism

text: Rhodococcus sp. RD6.2

characteristic: strain

text: Rhodococcus str. RD6.2


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UMR CNRS 6290

text: public

tag: Namespace:UMR CNRS 6290

text: African clawed frog

characteristic: common name

text: C1R2 Control embryos uninjected

characteristic: description

text: 26 (NF)

characteristic: dev stage

text: Xenopus laevis

characteristic: replicate

text: Xenopus laevis

characteristic: tissue type

text: RNAseq samples

text: Uninjected

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UMR CNRS 6290

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: African clawed frog

text: C1R3 Control embryos uninjected

text: 26 (NF)

text: Xenopus laevis

text: Xenopus laevis

text: RNAseq samples

characteristic: title

text: Uninjected


text: UMR CNRS 6290

text: public

characteristic: INSDC status

text: African clawed frog

text: C2R3 Morphant Exosc9 embryos

text: 26 (NF)

text: Xenopus laevis

characteristic: organism

text: Xenopus laevis

text: RNAseq samples


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UMR CNRS 6290

text: public

text: African clawed frog

text: C3R3 Morphant Ptbp1 embryos

text: 26 (NF)

text: Xenopus laevis

text: Xenopus laevis

text: RNAseq samples


text: WAGENINGEN UNIVERSIT

text: public

tag: Namespace:WAGENINGEN UNIVERSIT

text: Riverbed sediment sample

characteristic: description

text: sediment metagenome

text: sediment metagenome

text: Pyrosequencing

characteristic: sequencing method


text: public

tag: Namespace:Department of Plant Sciences University of Cambridge UK

text: ArrayExpress

characteristic: broker name

text: guard cell

characteristic: cell type

text: Protocols: at least 2500 cells were harvested after EtOH / paraffin fixing by laser capture microdissection. According to Aubry et al., 2014. PlosGenetics Matures leaves from LD (16h light/8h dark) plants were harvested 4 hours after dawn. LCM derived RNA was extracted using Life technology Picopure RNA kit with DNAse treatement Libraries were constructed using polyA purified RNA and classic Illumina pipeline for unstranded 100 bp SE protocol

text: Tarenaya hassleriana

text: Tarenaya hassleriana

text: leaf

characteristic: organism part

text: Tarenaya hassleriana


characteristic: ENA-FIRST-PUBLIC

text: Department of Plant Sciences University of Cambridge UK

text: public

text: ArrayExpress

text: mesophyll cell

text: Cleome gynandra

text: Cleome gynandra

text: leaf

text: Cleome gynandra


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: guard cell

text: Cleome gynandra

text: Cleome gynandra

text: leaf

text: Cleome gynandra


characteristic: INSDC center name

text: public

text: ArrayExpress

text: mesophyll cell

text: Tarenaya hassleriana

text: Tarenaya hassleriana

text: leaf

text: Tarenaya hassleriana


characteristic: INSDC first public

text: public

text: ArrayExpress

text: guard cell

text: Tarenaya hassleriana

text: Tarenaya hassleriana

text: leaf

text: Tarenaya hassleriana


text: UMR CNRS 6290

characteristic: INSDC last update

text: public

text: African clawed frog

characteristic: common name

text: C3R1 Morphant Ptbp1 embryos

text: 26 (NF)

characteristic: dev stage

text: Xenopus laevis

characteristic: replicate

text: Xenopus laevis

characteristic: tissue type

text: RNAseq samples

characteristic: treatment


characteristic: ENA-CHECKLIST

text: UMR CNRS 6290

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: African clawed frog

text: C3R2 Morphant Ptbp1 embryos

text: 26 (NF)

text: Xenopus laevis

characteristic: organism

text: Xenopus laevis

text: RNAseq samples

characteristic: title


characteristic: External Id

text: Genoscope CEA

text: public

tag: Namespace:Genoscope CEA

text: Meloidogyne arenaria

text: Meloidogyne arenaria

text: Meloidogyne arenaria


characteristic: ENA-FIRST-PUBLIC

text: Genoscope CEA

text: public

text: root-knot nematode

text: Meloidogyne javanica

text: Meloidogyne javanica

text: Meloidogyne javanica


characteristic: ENA-LAST-UPDATE

text: BAH-GU

text: public

text: No RT/PCR

characteristic: description

text: Foot-and-mouth disease virus

text: Foot-and-mouth disease virus

text: FMDV Clone Seq Control Sample for Error Determination


text: BAH-GU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 19 cycles of PCR

text: Foot-and-mouth disease virus

text: Foot-and-mouth disease virus

text: FMDV Clone PCRlow Control Sample for Error Determination


text: BAH-GU

characteristic: INSDC last update

text: public

text: 39 cycles of PCR

text: Foot-and-mouth disease virus

text: Foot-and-mouth disease virus

text: FMDV Clone PCRhigh Control Sample for Error Determination


text: BAH-GU

text: public

text: Transcribed, reverse transcribed, 39 cycles of PCR

text: Foot-and-mouth disease virus

text: Foot-and-mouth disease virus

text: FMDV Clone RT-PCR Control Sample for Error Determination


text: public

text: metagenome

text: metagenome

text: Synthetic community sequencing


text: public

text: metagenome

text: metagenome

text: Synthetic community sequencing0


text: DISTAL

text: public

text: ass

characteristic: common name

text: Equus asinus

text: Equus asinus

text: DONKEY


text: CARDIFF UNIVERSITY

text: public

text: India

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Clinical sample, blood

characteristic: isolation source

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: A. baumannii CHI-32


characteristic: ENA-CHECKLIST

text: CARDIFF UNIVERSITY

text: public

text: India

text: Clinical sample, sputum.

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: A. baumannii CHI-34


Donor7 time point 3

text: public

characteristic: INSDC status

text: Donor7 time point 3

text: granulocytes

characteristic: cell type

text: human

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: blood

characteristic: tissue type

text: Donor7 time point 3


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Campylobacter sp. RC7

text: Italy

characteristic: country

text: carriage

characteristic: host status

text: cloacal swab

text: Campylobacter sp. RC7

characteristic: organism

text: Campylobacter sp. RC7

text: Testudo hermanii hermanii

characteristic: specific host

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/10740571/2010(H1N1))

text: OM

characteristic: passage history

characteristic: segment

characteristic: serotype

text: Influenza A virus A/England/10740571/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: United Kingdom:Liverpool

text: United Kingdom

text: Liverpool

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/29/2010(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/29/2011 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/694/2010(H1N1))

text: OM

text: Influenza A Virus A/England/694/2010 Sequence

characteristic: title


text: SC

text: public

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: Influenza A virus (A/England/05140281/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/05140281/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/10820733/2010(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/10820733/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

characteristic: collection date

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: Influenza A virus (A/England/05000088/2010(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/05000088/2010 Sequence


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

text: Homo sapiens

text: A

text: Influenza A virus (A/England/WTSI1769/2010(H1N1))

text: OM

text: Influenza A Virus A/England/WTSI1769/2010 Sequence

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

text: United Kingdom:London

characteristic: geographic location (country and/or sea)

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/687/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/687/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/446/2010(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/446/2010 Sequence


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: EBLO

text: Influenza A virus (A/England/WTSI1774/2010(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/WTSI1774/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

text: United Kingdom:London

characteristic: geographic location (country and/or sea)

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

text: NPA

text: Influenza A virus (A/England/10740688/2010(H1N1))

text: OM

text: Influenza A Virus A/England/10740688/2010 Sequence

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

characteristic: influenza virus type

text: Influenza A virus (A/England/414/2010(H1N1))

characteristic: passage history

text: Influenza A Virus A/England/414/2010 Sequence


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: United Kingdom

text: Liverpool

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/WTSI1778/2009(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/WTSI1778/2009 Sequence


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/WTSI1781/2011(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/WTSI1781/2011 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

text: Influenza A virus (A/England/05040138/2010(H1N1))

text: OM

text: Influenza A Virus A/England/05040138/2010 Sequence

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/665/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/665/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/05020662/2010(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/05020662/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

text: Homo sapiens

text: A

text: Influenza A virus (A/England/343/2010(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/343/2010 Sequence


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

text: NPA

text: Influenza A virus (A/England/01180015/2010(H1N1))

text: OM

text: Influenza A Virus A/England/01180015/2010 Sequence

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/10740623/2011(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/10740623/2011 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: Influenza A virus (A/England/05080831/2010(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/05080831/2010 Sequence


characteristic: External Id

text: SC

text: public

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: Liverpool

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/12240614/2011(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/12240614/2011 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

text: NPA

text: Influenza A virus (A/England/32/2010(H1N1))

text: OM

text: Influenza A Virus A/England/32/2010 Sequence

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/10740561/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/10740561/2010 Sequence


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: collection date

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/05020665/2010(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/05020665/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/10740707/2011(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/10740707/2011 Sequence


characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: human

characteristic: common name

text: This is a pool of amplicons from many human samples. For more details on the samples see 1000genomes.org. List of samples(loci): NA12890(chr1:7503106-7504052), HG02156(chr1:16697715-16698575), NA18626(chr1:31344038-31344592), NA20522(chr1:44822001-44823172), NA18548(chr1:92131841-92132615), NA19462(chr1:104580484-104581982), NA20858(chr1:113206102-113206542), NA19010(chr1:116119824-116120550), NA12058(chr1:197756784-197757982), NA21112(chr1:215688913-215691281), NA19720(chr1:224383799-224385950), NA18952(chr1:225094545-225095801), NA19669(chr1:225415104-225417480), NA18909(chr1:240116007-240116829), NA18623(chr2:10825964-10827217), NA11892(chr2:33764554-33765272), NA19908(chr2:61700635-61703542), NA20888(chr2:66753510-66754817), NA18910(chr2:77051092-77051737), NA19922(chr2:88575783-88577218), HG01912(chr2:100818240-100818837), HG00267(chr2:121140705-121141706), NA19062(chr2:129685049-129686125), NA19669(chr2:133518790-133519828), NA20896(chr2:153459801-153461443), NA18621(chr2:176683216-176684350), NA19466(chr2:216827468-216828214), NA20805(chr2:230843690-230845046), NA18597(chr3:10740102-10740516), NA19068(chr3:30086771-30089474), NA19360(chr3:32645117-32647055), NA20813(chr3:36406564-36407425), NA19391(chr3:52430225-52431256), NA19449(chr3:78589138-78591570), NA18959(chr3:82203552-82204280), NA19819(chr3:127496569-127497727), HG01890(chr3:164777084-164777717), NA19377(chr3:165031917-165032635), NA18628(chr3:168105558-168106012), NA18993(chr3:184308732-184310994), NA18877(chr3:190833466-190834054), NA20512(chr4:16917031-16917489), HG02166(chr4:45756726-45757244), NA19703(chr4:101599641-101601597), NA18621(chr4:110135192-110136895), NA18542(chr4:112007385-112008472), NA19652(chr4:117789746-117790329), NA18647(chr4:188557473-188558415), NA20901(chr5:28334788-28335360), NA12249(chr5:31190244-31191191), NA20815(chr5:32885451-32886564), HG02008(chr5:95600703-95601979), NA19113(chr5:116050626-116051491), NA19084(chr5:143406066-143406762), NA19350(chr5:159208915-159209440), NA19334(chr5:171846321-171847877), NA19096(chr5:174876745-174877464), NA21120(chr5:174893447-174894154), NA18552(chr5:178123233-178125610), NA19213(chr6:3885172-3887450), NA18912(chr6:12438100-12439914), HG02178(chr6:22950852-22951395), NA18528(chr6:24044872-24045490), NA19700(chr6:51666866-51668289), NA19741(chr6:112122066-112122797), NA12348(chr6:119540405-119542258), NA19908(chr6:138060956-138061491), HG01991(chr7:3489094-3490932), NA20869(chr7:8353157-8355597), NA20870(chr7:9955821-9957694), NA18953(chr7:12348097-12349773), NA20895(chr7:25684448-25685708), NA19062(chr7:50264351-50265678), NA19461(chr7:52388784-52390225), NA20847(chr7:53649145-53649712), NA20775(chr7:54843099-54844864), NA19445(chr7:88091062-88092212), NA19121(chr7:101639514-101640776), NA19070(chr7:117011148-117013421), NA19909(chr7:128818839-128820973), NA20541(chr7:139982985-139983600), NA19716(chr7:151010030-151012107), NA19116(chr8:26349335-26350670), HG00565(chr8:43286135-43286918), NA19376(chr8:79818455-79818963), NA19256(chr8:87670352-87672616), NA18596(chr8:100157613-100158316), NA19372(chr8:103892570-103893319), NA18616(chr8:117092820-117095178), NA20876(chr8:122513909-122514879), NA18621(chr8:135240711-135241260), HG01608(chr8:138130954-138131563), NA11919(chr8:138348193-138349910), NA19663(chr9:31049004-31050191), NA19383(chr9:34596898-34599729), NA19430(chr9:38669076-38670013), NA19102(chr9:79779568-79780467), NA20757(chr9:91736469-91738377), NA18861(chr9:94721245-94722021), NA19210(chr9:125379135-125380572), NA18856(chr9:125486167-125487565), HG02035(chr9:134395534-134398111), NA20531(chr10:4721393-4722709), NA19684(chr10:62064545-62064992), NA19661(chr10:76504415-76505368), NA19920(chr10:87243107-87245543), NA18636(chr10:99779457-99781748), NA19088(chr10:107248496-107250431), NA19701(chr10:115171688-115172109), NA19184(chr11:24903953-24904869), NA19383(chr11:44121284-44123973), NA20852(chr11:66018563-66019946), NA19098(chr11:93856630-93858500), NA19655(chr11:105572202-105574937), NA19114(chr11:131065812-131066413), NA18870(chr12:24294901-24295482), NA20902(chr12:38317979-38318554), NA19152(chr12:51998046-51998938), HG02076(chr12:70680610-70682061), NA06994(chr12:71709550-71710286), NA19712(chr12:95952404-95953744), NA18486(chr12:96531673-96532573), NA18550(chr12:117589827-117590320), NA19922(chr12:121339170-121339624), NA12340(chr13:40173099-40175397), NA19062(chr13:44680691-44681643), NA20516(chr13:54724050-54724457), NA18526(chr13:72587484-72588715), HG01612(chr13:78140600-78142173), NA18596(chr13:94639461-94641217), NA21103(chr14:25612393-25613838), NA07048(chr14:48323979-48325261), NA18946(chr14:50464213-50464769), NA18559(chr14:54421581-54422340), NA19457(chr14:59040648-59041618), NA20906(chr14:62256302-62257487), NA18639(chr14:65842304-65843165), NA19655(chr14:72595933-72598856), NA19175(chr14:76091264-76092626), NA19031(chr15:23218717-23219289), HG02497(chr15:28248710-28249362), NA18566(chr16:1146763-1147186), NA18627(chr16:10837494-10838353), HG02164(chr16:49515689-49516116), NA19462(chr16:55918703-55920189), NA19159(chr17:35775210-35775782), NA18879(chr18:13918760-13919757), HG00266(chr18:39839179-39840224), NA19204(chr19:41144268-41145622)

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: 1000 Genomes Project phase 3 Inversion amplicons sequenced by Fuli Yu, BCM using PacBio, pool 3

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/701/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/701/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: United Kingdom:London

characteristic: geographic location (country and/or sea)

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

text: Homo sapiens

text: A

text: EBLO

characteristic: isolation source host associated

text: Influenza A virus (A/England/WTSI1807/2010(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/WTSI1807/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: United Kingdom

text: Liverpool

text: Homo sapiens

text: A

text: OTH

text: Influenza A virus (A/England/01220736/2009(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/01220736/2010 Sequence

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/10740581/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/10740581/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/673/2010(H1N1))

text: OM

text: Influenza A Virus A/England/673/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: United Kingdom:London

characteristic: geographic location (country and/or sea)

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/132/2011(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/132/2011 Sequence


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/01220639/2009(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/01220639/2009 Sequence

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: United Kingdom

text: London

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: Influenza A virus (A/England/05140216/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/05140216/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/WTSI1832/2010(H1N1))

text: OM

text: Influenza A Virus A/England/WTSI1832/2010 Sequence


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: United Kingdom

text: London

characteristic: geographic location region and locality

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/686/2010(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/686/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: United Kingdom:London

characteristic: geographic location (country and/or sea)

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/692/2010(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/692/2010 Sequence

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

characteristic: collection date

text: United Kingdom:London

text: United Kingdom

text: London

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: EBLO

text: Influenza A virus (A/England/00380709/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/00380709/2010 Sequence


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

text: A

text: Influenza A virus (A/England/04900053/2010(H1N1))

text: OM

text: Influenza A Virus A/England/04900053/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: United Kingdom:London

characteristic: geographic location (country and/or sea)

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: Influenza A virus (A/England/393/2010(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/393/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: United Kingdom:London

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: Influenza A virus (A/England/04980053/2010(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/04980053/2010 Sequence

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: collection date

text: United Kingdom

text: London

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: Influenza A virus (A/England/05160420/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/05160420/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/WTSI2051/2011(H1N1))

text: OM

text: Influenza A Virus A/England/WTSI2051/2011 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/719/2010(H1N1))

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/719/2010 Sequence


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: collection date

text: United Kingdom:London

characteristic: geographic location (country and/or sea)

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/10740561/2010(H1N1))

characteristic: organism

text: OM

characteristic: strain

text: Influenza A Virus A/England/10740561/2010 Sequence

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: Liverpool

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/12240612/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/12240612/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/10740681/2010(H1N1))

text: OM

text: Influenza A Virus A/England/10740681/2010 Sequence


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: collection date

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: EBLO

text: Influenza A virus (A/England/10/2010(H1N1))

characteristic: organism

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/10/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: TS

text: Influenza A virus (A/England/WTSI2060/2010(H1N1))

text: OM

characteristic: strain

text: Influenza A Virus A/England/WTSI2060/2010 Sequence

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: United Kingdom

text: London

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/700/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/700/2010 Sequence


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

text: A

text: Influenza A virus (A/England/05080637/2010(H1N1))

text: OM

text: Influenza A Virus A/England/05080637/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: collection date

text: United Kingdom

text: Liverpool

text: Homo sapiens

text: A

text: INP

characteristic: isolation source host associated

text: Influenza A virus (A/England/01580003/2010(H1N1))

characteristic: organism

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/01580003/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: NPA

text: Influenza A virus (A/England/672/2010(H1N1))

text: OM

characteristic: strain

text: Influenza A Virus A/England/672/2010 Sequence

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC first public

text: public

text: United Kingdom

text: London

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: Influenza A virus (A/England/283/2010(H1N1))

characteristic: passage history

text: Influenza A Virus A/England/283/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

text: A

text: EBLO

text: Influenza A virus (A/England/WTSI2067/2010(H1N1))

text: OM

text: Influenza A Virus A/England/WTSI2067/2010 Sequence


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: United Kingdom

text: Liverpool

text: Homo sapiens

text: A

text: NPA

characteristic: isolation source host associated

text: Influenza A virus (A/England/12240607/2010(H1N1))

characteristic: organism

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/12240607/2010 Sequence


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: OM

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: United Kingdom

text: London

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/213/2011(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/213/2011 Sequence


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

text: A

text: Influenza A virus (A/England/05140176/2010(H1N1))

text: OM

text: Influenza A Virus A/England/05140176/2010 Sequence


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: Influenza A virus (A/England/04980045/2010(H1N1))

characteristic: organism

text: OM

characteristic: segment

characteristic: serotype

text: Influenza A Virus A/England/04980045/2010 Sequence


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: London

text: Homo sapiens

text: A

text: EBLO

characteristic: isolation source host associated

text: Influenza A virus (A/England/WTSI2076/2010(H1N1))

text: OM

characteristic: strain

text: Influenza A Virus A/England/WTSI2076/2010 Sequence

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: United Kingdom

text: London

text: Homo sapiens

characteristic: host

text: A

characteristic: influenza virus type

text: NPA

text: Influenza A virus (A/England/01180011/2010(H1N1))

text: OM

characteristic: passage history

text: Influenza A Virus A/England/01180011/2010 Sequence


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: United Kingdom

characteristic: geographic location country and/or sea

text: London

characteristic: geographic location region and locality

text: Homo sapiens

text: A

text: Influenza A virus (A/England/374/2010(H1N1))

text: Influenza A Virus A/England/374/2010 Sequence


Donor3 time point 3

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CE-M-M-, RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

text: public

characteristic: SRA accession

text: Donor3 time point 3

text: granulocytes

characteristic: cell type

text: human

characteristic: common name

text: Granulocytes isolated using Ficoll density centrifugation method from fresh blood drawn from a healthy donor

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: female

characteristic: sex

text: blood

characteristic: tissue type

text: Donor3 time point 3


characteristic: ENA-FIRST-PUBLIC

text: CARDIFF UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: isolate

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Whole genome sequencing of Pseudomonas aeruginosa isolates associated with industry

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CARDIFF UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: TSB 8

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Whole genome sequencing of industrial Pseudomonas aeruginosa isolates


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CARDIFF UNIVERSITY

text: public

text: 2.5% 7

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

characteristic: SRA accession

text: 10% 6

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 12.5% 3

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: 15% 2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: CARDIFF UNIVERSITY

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


Donor4 time point 2

text: public

text: Donor4 time point 2

text: granulocytes

characteristic: cell type

text: human

characteristic: common name

text: Primary granulocytes isolated using Ficoll gradient centrifugation method from fresh blood of a healthy donor

text: Homo sapiens

text: Homo sapiens

text: female

text: blood

text: Donor4 time point 2


Donor4 time point 3

text: public

text: Donor4 time point 3

text: granulocytes

text: human

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: female

text: blood

text: Donor4 time point 3


Donor5 time point 1

text: public

text: Donor5 time point 1

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: tissue type

text: Donor5 time point 1


Donor5 time point 2

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: Donor5 time point 2

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: blood

text: Donor5 time point 2


Donor5 time point 3

characteristic: INSDC last update

text: public

text: Donor5 time point 3

characteristic: Submitter Id

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: blood

text: Donor5 time point 3


Donor6 time point 1

text: public

text: Donor6 time point 1

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: blood

text: Donor6 time point 1

characteristic: title


Telo

characteristic: ENA-LAST-UPDATE

text: DUNDEE

text: public

text: Telo

text: Genomic DNA was extracted and RNAi target fragments were amplified using Lib2F and Lib2R primers (see Glover et al. 2014,

text: Bloodstream Form

characteristic: dev stage

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: Telo


text: Public Health London

characteristic: INSDC center name

text: public

characteristic: INSDC status

tag: Namespace:Public Health London

characteristic: collection date

text: London, UK

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: PCR Ribotype 017 London Isolate


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Public Health London

text: public

characteristic: SRA accession

text: London, UK

text: Human

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: PCR Ribotype 017 London Isolate


text: Public Health London

text: public

characteristic: description

text: London, UK

text: Hospital ward environment

text: Peptoclostridium difficile

characteristic: organism

text: Peptoclostridium difficile

text: PCR Ribotype 017 London Isolate


characteristic: ENA-FIRST-PUBLIC

text: AUSTRIAN INSTITUTE OF TECHNOLOGY

text: public

tag: Namespace:AUSTRIAN INSTITUTE OF TECHNOLOGY

text: Pantoea ananatis

text: Pantoea ananatis

characteristic: strain

text: Pantoea ananatis S6


text: AUSTRIAN INSTITUTE OF TECHNOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Pantoea ananatis

text: Pantoea ananatis

text: Pantoea ananatis S7


text: AUSTRIAN INSTITUTE OF TECHNOLOGY

text: public

characteristic: Submitter Id

text: Pantoea ananatis

text: Pantoea ananatis

text: Pantoea ananatis S8

characteristic: title


Ratus

characteristic: ENA-LAST-UPDATE

text: THE UNIVERSITY OF SYDNEY

text: public

text: Ratus

tag: Namespace:THE UNIVERSITY OF SYDNEY

text: BRAEMBL

characteristic: broker name

text: Menna Jones and Rodrogo Hamede (University of Tasmania)

characteristic: collected by

text: Tasmanian devil

characteristic: common name

text: Australia

characteristic: country

text: Resequencing Tasmanian devil genome, Ratus

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: Ear biopsy

characteristic: tissue type

text: Ratus


Amor

characteristic: ENA-CHECKLIST

text: THE UNIVERSITY OF SYDNEY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Amor

text: BRAEMBL

text: Tasmanian devil

text: Australia

text: Resequencing Tasmanian devil genome, Amor

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: Ear biopsy

text: Amor


Nairobi

characteristic: External Id

text: THE UNIVERSITY OF SYDNEY

text: public

characteristic: SRA accession

text: Nairobi

text: BRAEMBL

text: Tasmanian devil

text: Australia

text: Resequencing Tasmanian devil genome, Nairobi

characteristic: description

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: Ear biopsy

text: Nairobi


Honeyb

characteristic: ENA-FIRST-PUBLIC

text: THE UNIVERSITY OF SYDNEY

text: public

text: Honeyb

text: BRAEMBL

text: Tasmanian devil

text: Australia

text: Resequencing Tasmanian devil genome, Honeyb

text: Sarcophilus harrisii

characteristic: organism

text: Sarcophilus harrisii

text: Ear biopsy

text: Honeyb


Wilkam

text: THE UNIVERSITY OF SYDNEY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Wilkam

text: BRAEMBL

text: Tasmanian devil

text: Australia

text: Resequencing Tasmanian devil genome, Wilkam

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: Ear biopsy

text: Wilkam


Gengibre

text: THE UNIVERSITY OF SYDNEY

text: public

text: Gengibre

characteristic: Submitter Id

text: BRAEMBL

text: Tasmanian devil

text: Australia

text: Resequencing Tasmanian devil genome, Gengibre

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: Ear biopsy

text: Gengibre

characteristic: title


Nayahu

characteristic: ENA-LAST-UPDATE

text: THE UNIVERSITY OF SYDNEY

text: public

text: Nayahu

text: BRAEMBL

characteristic: broker name

text: Tasmanian devil

text: Australia

text: Resequencing Tasmanian devil genome, Nayahu

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: Ear biopsy

text: Nayahu


text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: Copepoda environmental sample

text: Copepoda environmental sample

text: Copepods


Hormogaster riojana

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

text: Hormogaster riojana

tag: Namespace:CARDIFF SCHOOL OF BIOSCIENCES

text: Hormogaster riojana

text: Hormogaster riojana

text: Hormogaster riojana


Hormogaster najaformis

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

text: Hormogaster najaformis

text: Hormogaster najaformis

text: Hormogaster najaformis

text: Hormogaster najaformis


Vignysa popi

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

text: Vignysa popi

text: Vignysa teres

text: Vignysa teres

text: Vignysa popi


Ailoscolex lacteospumosus

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

text: Ailoscolex lacteospumosus

text: Ailoscolex lacteospumosus

text: Ailoscolex lacteospumosus

text: Ailoscolex lacteospumosus


Hemigastrodrilus monicae

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

text: Hemigastrodrilus monicae

text: Hemigastrodrilus monicae

text: Hemigastrodrilus monicae

text: Hemigastrodrilus monicae


Xana omodeoi

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

text: Xana omodeoi

text: Xana omodeoi

text: Xana omodeoi

text: Xana omodeoi


text: ROTHAMSTED RESEARCH

text: public

tag: Namespace:ROTHAMSTED RESEARCH

characteristic: collection date

text: bread wheat

characteristic: common name

characteristic: environment (biome)

text: glasshouse

characteristic: environment (feature)

text: leaf (PO:0025034)

characteristic: environment (material)

text: plant-associated

characteristic: environmental package

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Triticum aestivum

text: Ztritici on Wheat

characteristic: project name

text: Triticum aestivum

text: Illumina HiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: ROTHAMSTED RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: bread wheat

text: glasshouse

text: leaf (PO:0025034)

text: United Kingdom

text: eukaryote

characteristic: investigation type

text: Triticum aestivum

characteristic: organism

text: Ztritici on Wheat

text: Triticum aestivum

text: Illumina HiSeq


characteristic: ENA-LAST-UPDATE

text: HHU (Heinrich Heine University)

characteristic: INSDC last update

text: public

characteristic: Leaf_number_(emerged_from main_shoot)

tag: Namespace:HHU (Heinrich Heine University)

characteristic: Submitter Id

characteristic: biological replication

text: barley

characteristic: common name

text: Scarlett

characteristic: genotype

text: Hordeum vulgare

text: Long Day

characteristic: photoperiod

text: Hordeum vulgare

text: Leaf

characteristic: tissue

characteristic: title


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: HHU (Heinrich Heine University)

text: public

text: barley

text: Hordeum vulgare

text: Short Day

text: Hordeum vulgare

text: Leaf


text: HHU (Heinrich Heine University)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: average number of floret primoria on harvested main shoot apices

text: barley

text: Scarlett

text: Hordeum vulgare

text: Long Day

text: Hordeum vulgare

text: Apex


characteristic: ENA-LAST-UPDATE

text: HHU (Heinrich Heine University)

text: public

characteristic: SRA accession

text: barley

text: Hordeum vulgare

characteristic: organism

text: Short Day

text: Hordeum vulgare

text: Apex


text: HHU (Heinrich Heine University)

characteristic: INSDC last update

text: public

characteristic: Leaf_number_(emerged_from main_shoot)

characteristic: Submitter Id

text: barley

text: Hordeum vulgare

text: Long Day

text: Hordeum vulgare

text: Apex


text: HHU (Heinrich Heine University)

text: public

characteristic: biological replication

text: barley

characteristic: common name

characteristic: genotype

text: Hordeum vulgare

text: Long Day

text: Hordeum vulgare

text: Leaf


DNA.Amb.MS.mnifh

text: YALE

text: public

text: DNA.Amb.MS.mnifh

text: metagenome

text: metagenome

text: iSW_Sep_DNA iSW_Sep_DNA iSW_Sep_DNA iSW_Sep_DNA NA

characteristic: title


characteristic: ENA-CHECKLIST

text: YALE

text: public

text: metagenome

text: metagenome

text: SW Nutrient Nutrient SW Light


characteristic: ENA-FIRST-PUBLIC

text: YALE

text: public

text: metagenome

text: metagenome

text: NP Nutrient Nutrient No Dark


characteristic: External Id

text: YALE

text: public

text: metagenome

text: metagenome

text: GP Nutrient Nutrient Yes Light


text: YALE

characteristic: INSDC center name

text: public

text: metagenome

text: metagenome

text: GP Nutrient Nutrient Yes Dark


text: YALE

characteristic: INSDC first public

text: public

text: metagenome

text: metagenome

text: GN Nutrient Nutrient Yes Light


text: YALE

text: public

characteristic: INSDC status

text: metagenome

text: metagenome

text: GN Nutrient Nutrient Yes Dark


text: YALE

text: public

text: metagenome

text: metagenome

text: GNP Nutrient Nutrient Yes Light


text: YALE

text: public

text: metagenome

text: metagenome

text: GNP Nutrient Nutrient Yes Dark


text: YALE

text: public

text: metagenome

text: metagenome

text: iSW Particle iSW iSW NA


text: YALE

text: public

text: metagenome

text: metagenome

text: l-SW Particle Large No-L NA


text: YALE

text: public

text: metagenome

text: metagenome

text: SW Nutrient Nutrient SW Dark


text: YALE

text: public

text: metagenome

text: metagenome

text: l-GX Particle Large Yes-L NA


text: YALE

text: public

text: metagenome

text: metagenome

text: s-SW Particle Small No-S NA


text: YALE

text: public

text: metagenome

text: metagenome

text: s-GX Particle Small Yes-S NA


text: YALE

text: public

text: metagenome

text: metagenome

text: P Nutrient Nutrient No Light


text: YALE

text: public

text: metagenome

text: metagenome

text: P Nutrient Nutrient No Dark


text: YALE

text: public

text: metagenome

text: metagenome

text: N Nutrient Nutrient No Light


text: YALE

text: public

text: metagenome

text: metagenome

text: N Nutrient Nutrient No Dark


text: YALE

text: public

text: metagenome

text: metagenome

text: G Nutrient Nutrient Yes Light


text: YALE

text: public

text: metagenome

text: metagenome

text: G Nutrient Nutrient Yes Dark


text: YALE

text: public

text: metagenome

text: metagenome

text: NP Nutrient Nutrient No Light


cDNA.Amb.MS.mnifh

text: YALE

text: public

text: cDNA.Amb.MS.mnifh

text: metagenome

text: metagenome

text: iSW_Sep_cDNA iSW_Sep_cDNA iSW_Sep_cDNA iSW_Sep_cDNA NA


text: UNIVERSITY OF LIVERPOOL

text: public

tag: Namespace:UNIVERSITY OF LIVERPOOL

text: bread wheat

text: Wheat Chinese Spring grown at 27 degrees- 6Mb gene capture and bisulfite treated before sequencing, DNA extracted from 7 day old seedlings

characteristic: description

text: Triticum aestivum

text: Triticum aestivum

text: A genome-wide methylation study of hexaploid wheat


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LIVERPOOL

text: public

text: bread wheat

text: Wheat Chinese Spring grown at 12 degrees- 6Mb gene capture and bisulfite treated before sequencing, DNA extracted from 7 day old seedlings

text: Triticum aestivum

text: Triticum aestivum


Flaviflexus massiliensis

text: URMITE

text: public

characteristic: SRA accession

text: Flaviflexus massiliensis

text: Flaviflexus sp. SIT4

text: Flaviflexus sp. SIT4

characteristic: strain

text: Flaviflexus massiliensis, str. SIT4


text: Genoscope CEA

characteristic: INSDC last update

text: public

text: Thiomonas sp. CB3

characteristic: organism

text: Thiomonas sp. CB3

text: procaryotic genome sequencing


text: URMITE

text: public

characteristic: Submitter Id

text: Draft genome sequence of Mycobacterium europaeum CSUR P1344

text: Mycobacterium europaeum

text: Mycobacterium europaeum

text: CSUR P1344

text: Mycobacterium europaeum CSUR P1344, genome sequence


Bacillus niameyensis

text: URMITE

text: public

text: Bacillus niameyensis

text: Bacillus sp. SIT3

text: Bacillus sp. SIT3

text: Bacillus niameyensis


M_ conceptionense_D161

text: URMITE

text: public

text: M_ conceptionense_D161

text: Draft genome sequence of Mycobacterium conceptionense D16

text: Mycobacterium conceptionense

text: Mycobacterium conceptionense

text: Mycobacterium conceptionense D16, genome sequenc


text: URMITE

text: public

text: Draft genome sequence of Mycobacterium bohemicum DSM 44277

text: Mycobacterium bohemicum DSM 44277

text: Mycobacterium bohemicum DSM 44277

text: DSM 44277

text: Mycobacterium bohemicum DSM 44277, genome sequence


text: URMITE

text: public

text: Draft genome sequence of Mycobacterium lentiflavum CSUR P1491

text: Mycobacterium lentiflavum

text: Mycobacterium lentiflavum

text: CSUR P1491

text: Mycobacterium lentiflavum DSM 44418, genome sequence


text: ROTHAMSTED RESEARCH

text: public

text: Zymoseptoria tritici IPO323

text: Zymoseptoria tritici IPO323

text: Z.tritici grown on culture medium Czapek-Dox broth (CDB)


text: ROTHAMSTED RESEARCH

text: public

text: Zymoseptoria tritici IPO323

text: Zymoseptoria tritici IPO323

text: Z.tritici grown on potato dextrose broth (PDB)


Donor 8

text: public

text: Donor 8

tag: Namespace:CE-M-M-, RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

text: granulocytes

characteristic: cell type

text: human

text: Granulocytes isolated using Ficoll density centrifugation method from fresh blood drawn from a healthy donor

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: tissue type

text: Donor 8


Donor 9

text: CE-M-M-, RESEARCH CENTER FOR MOLECULAR MEDICINE OF THE AUSTRIAN ACADEMY OF SCIENCES

text: public

text: Donor 9

text: granulocytes

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: female

text: blood

text: Donor 9

characteristic: title


Donor 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Donor 10

text: granulocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: female

text: blood

text: Donor 10


Numidum massiliensis

characteristic: External Id

text: URMITE

characteristic: INSDC center name

text: public

text: Numidum massiliensis

text: bacterium mt3

text: bacterium mt3

text: Numidum massiliensis


text: Genoscope CEA

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Thiomonas sp. CB6

text: Thiomonas sp. CB6

text: procaryotic genome sequencing


characteristic: ENA-LAST-UPDATE

text: Genoscope CEA

text: public

text: Corynebacterium striatum

text: Corynebacterium striatum

text: procaryotic genoms sequencing


text: ROTHAMSTED RESEARCH

text: public

characteristic: SRA accession

text: Time course of Z.tritici X days post inoculation on wheat leafs

characteristic: description

text: Zymoseptoria tritici IPO323

text: Zymoseptoria tritici IPO323

text: Z.tritici on wheat leafs (1dpi)


text: ROTHAMSTED RESEARCH

characteristic: INSDC last update

text: public

text: Zymoseptoria tritici IPO323

text: Zymoseptoria tritici IPO323

text: Z.tritici on wheat leafs (4dpi)


text: ROTHAMSTED RESEARCH

text: public

text: Zymoseptoria tritici IPO323

characteristic: organism

text: Zymoseptoria tritici IPO323

text: Z.tritici on wheat leafs (9dpi)


text: ROTHAMSTED RESEARCH

text: public

characteristic: Submitter Id

text: Zymoseptoria tritici IPO323

text: Zymoseptoria tritici IPO323

text: Z.tritici on wheat leafs (14dpi)


text: ROTHAMSTED RESEARCH

text: public

text: Zymoseptoria tritici IPO323

text: Zymoseptoria tritici IPO323

text: Z.tritici on wheat leafs (21dpi)


text: IGC

text: public

text: fruit fly

text: Ancestral Population, Replicate 2

text: adult

characteristic: dev stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Ancestral - Rep.2


text: IGC

text: public

text: fruit fly

text: Ancestral Population, Replicate 3

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Ancestral - Rep.3


text: IGC

text: public

text: fruit fly

text: Ancestral Population, Replicate 4

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Ancestral - Rep.4


text: IGC

text: public

text: fruit fly

text: Control Systemic Population, Generation 20, Replicate 1

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Control - G20 - Rep.1


text: IGC

text: public

text: fruit fly

text: Control Systemic Population, Generation 20, Replicate 2

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Control - G20 - Rep.2


text: IGC

text: public

text: fruit fly

text: Control Systemic Population, Generation 20, Replicate 3

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Control - G20 - Rep.3


text: IGC

text: public

text: fruit fly

text: Control Systemic Population, Generation 20, Replicate 4

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Control - G20 - Rep.4


text: IGC

text: public

text: fruit fly

text: Virus Selected Population, Generation 20, Replicate 1

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Virus Selected - G20 - Rep. 1


text: IGC

text: public

text: fruit fly

text: Virus Selected Population, Generation 20, Replicate 2

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Virus Selected - G20 - Rep. 2


text: IGC

text: public

text: fruit fly

text: Virus Selected Population, Generation 20, Replicate 3

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Virus Selected - G20 - Rep. 3


text: IGC

text: public

text: fruit fly

text: Virus Selected Population, Generation 20, Replicate 4

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole body

text: Virus Selected - G20 - Rep. 4


text: UH

text: public

characteristic: culture collection

text: Halobacterium hubeiense

text: Halobacterium hubeiense

characteristic: strain

text: Halobacterium hubeiense complete genome


text: public

text: rice

characteristic: common name

text: Transcriptom sequecing of the rice, Heugjinju RNA_seq library at seed development and heading date + 7days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Heugjinju seed development and heading date + 7days Transcriptom sequencing


text: public

text: rice

text: Transcriptom sequecing of the rice, Heugseol RNA_seq library at seed development and heading date, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Heugseol seed development and heading date Transcriptom sequencing

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: rice

text: Transcriptom sequecing of the rice, Heugseol RNA_seq library at seed development and heading date + 7days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Heugseol seed development and heading date + 7days Transcriptom sequencing


characteristic: ENA-FIRST-PUBLIC

text: public

text: rice

text: Transcriptom sequecing of the rice, Heugnam RNA_seq library at seed development and heading date, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Heugnam seed development and heading date Transcriptom sequencing


characteristic: External Id

text: public

text: rice

text: Transcriptom sequecing of the rice, Heugnam RNA_seq library at seed development and heading date + 14days, using Illumina Hiseq 2000

text: Oryza sativa

text: Oryza sativa

text: Rice, Heugnam seed development and heading date + 14days Transcriptom sequencing


text: INSTITUT PASTEUR

characteristic: INSDC center name

text: public

tag: Namespace:INSTITUT PASTEUR

text: ARS capture experiment

text: Candida glabrata

text: Candida glabrata

text: ARS capture experiment


E-MTAB-3312:Sample 18

characteristic: INSDC first public

text: public

text: E-MTAB-3312:Sample 18

tag: Namespace:Sir William Dunn School of Pathology University of Oxford

text: ArrayExpress

characteristic: broker name

text: AXA3, axenic amastigotes, 24h after start of differentiation; used to generate library enriched for transcript 3'ends Protocols: Axenic amastigotes were generated by dilution of stationary phase Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) into Schneider’s Drosophila medium at pH 5.5 to a density of 3x10E6 cells/ml and incubation at 34°C for 24h prior to RNA extraction. For determination of polyadenylation addition sites, polyadenylated RNA purified from total RNA was converted to cDNA using a 5’-T15VN-3’ oligonucleotide (V=A, G or C; N=T, A, G or C) primer to enrich for 3’ ends of transcripts. The cDNA was sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: axenic amastigote

characteristic: developmental stage

text: not applicable (outside host)

characteristic: host

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 18


E-MTAB-3312:Sample 16

characteristic: ENA-LAST-UPDATE

text: Sir William Dunn School of Pathology University of Oxford

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3312:Sample 16

text: ArrayExpress

text: PRO3, cultured promastigotes in exponential growth phase; used to generate library enriched for transcript 3'ends Protocols: Promastigote-form L. mexicana (WHO strain MNYC/BZ/62/M379) were grown at 28°C in M199 medium (Life Technologies) supplemented with 2.2 g/L NaHCO3, 0.005% haemin, 40 mM 4-(2-Hydroxyethyl)piperazine-1-ethanesulfonic acid (HEPES) pH 7.4 and 10% FCS (Life Technologies 10500-064). Cells were maintained in exponential growth phase prior to RNA extraction. For determination of polyadenylation addition sites, polyadenylated RNA purified from total RNA was converted to cDNA using a 5’-T15VN-3’ oligonucleotide (V=A, G or C; N=T, A, G or C) primer to enrich for 3’ ends of transcripts. The cDNA was sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

characteristic: description

text: promastigote

text: not applicable (outside host)

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 16


E-MTAB-3312:Sample 6

characteristic: INSDC last update

text: public

text: E-MTAB-3312:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: AMA3, macrophages containing intracellular Leishmania, 24h post infection Protocols: To generate intracellular amastigotes, Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) were left to grow into stationary phase (from 1x10E5 to 2x10E7 cells/ml) and then incubated with BMDMs at a parasite to macrophage ratio of 20 for 2h before washing off remaining extracellular parasites. Infected macrophages were incubated 24h at 34°C prior to RNA extraction. For mapping of splice acceptor sites and determination of transcript abundances, polyadenylated RNA was purified from total RNA, converted to cDNA using random hexamer primers, sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: amastigote

text: Mus musculus

text: bone marrow macrophage

characteristic: host cell type

text: Leishmania mexicana and Mus musculus

characteristic: organism

text: mixed sample

text: mixed sample

text: Sample 6


E-MTAB-3312:Sample 3

text: public

text: E-MTAB-3312:Sample 3

text: ArrayExpress

text: AXA1, axenic amastigotes, 24h after start of differentiation Protocols: Axenic amastigotes were generated by dilution of stationary phase Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) into Schneider’s Drosophila medium at pH 5.5 to a density of 3x10E6 cells/ml and incubation at 34°C for 24h prior to RNA extraction. For mapping of splice acceptor sites and determination of transcript abundances, polyadenylated RNA was purified from total RNA, converted to cDNA using random hexamer primers, sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: axenic amastigote

text: not applicable (outside host)

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 3

characteristic: title


E-MTAB-3312:Sample 2

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3312:Sample 2

text: ArrayExpress

text: AMA1, macrophages containing intracellular Leishmania, 24h post infection Protocols: To generate intracellular amastigotes, Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) were left to grow into stationary phase (from 1x10E5 to 2x10E7 cells/ml) and then incubated with BMDMs at a parasite to macrophage ratio of 20 for 2h before washing off remaining extracellular parasites. Infected macrophages were incubated 24h at 34°C prior to RNA extraction. For mapping of splice acceptor sites and determination of transcript abundances, polyadenylated RNA was purified from total RNA, converted to cDNA using random hexamer primers, sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: amastigote

text: Mus musculus

text: bone marrow macrophage

text: Leishmania mexicana and Mus musculus

text: mixed sample

text: mixed sample

text: Sample 2


E-MTAB-3312:Sample 10

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3312:Sample 10

text: ArrayExpress

text: PRO3, cultured promastigotes in exponential growth phase Protocols: Promastigote-form L. mexicana (WHO strain MNYC/BZ/62/M379) were grown at 28°C in M199 medium (Life Technologies) supplemented with 2.2 g/L NaHCO3, 0.005% haemin, 40 mM 4-(2-Hydroxyethyl)piperazine-1-ethanesulfonic acid (HEPES) pH 7.4 and 10% FCS (Life Technologies 10500-064). Cells were maintained in exponential growth phase prior to RNA extraction. For mapping of splice acceptor sites and determination of transcript abundances, polyadenylated RNA was purified from total RNA, converted to cDNA using random hexamer primers, sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: promastigote

text: not applicable (outside host)

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 10


E-MTAB-3312:Sample 4

characteristic: External Id

text: public

text: E-MTAB-3312:Sample 4

text: ArrayExpress

text: PRO1, cultured promastigotes in exponential growth phase Protocols: Promastigote-form L. mexicana (WHO strain MNYC/BZ/62/M379) were grown at 28°C in M199 medium (Life Technologies) supplemented with 2.2 g/L NaHCO3, 0.005% haemin, 40 mM 4-(2-Hydroxyethyl)piperazine-1-ethanesulfonic acid (HEPES) pH 7.4 and 10% FCS (Life Technologies 10500-064). Cells were maintained in exponential growth phase prior to RNA extraction. For mapping of splice acceptor sites and determination of transcript abundances, polyadenylated RNA was purified from total RNA, converted to cDNA using random hexamer primers, sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: promastigote

text: not applicable (outside host)

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 4


E-MTAB-3312:Sample 13

characteristic: INSDC center name

text: public

text: E-MTAB-3312:Sample 13

text: ArrayExpress

text: AMA2, macrophages containing intracellular Leishmania, 24h post infection; used to generate library enriched for transcript 3'ends Protocols: To generate intracellular amastigotes, Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) were left to grow into stationary phase (from 1x10E5 to 2x10E7 cells/ml) and then incubated with BMDMs at a parasite to macrophage ratio of 20 for 2h before washing off remaining extracellular parasites. Infected macrophages were incubated 24h at 34°C prior to RNA extraction. For determination of polyadenylation addition sites, polyadenylated RNA purified from total RNA was converted to cDNA using a 5’-T15VN-3’ oligonucleotide (V=A, G or C; N=T, A, G or C) primer to enrich for 3’ ends of transcripts. The cDNA was sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: amastigote

text: Mus musculus

text: bone marrow macrophage

text: Leishmania mexicana and Mus musculus

text: mixed sample

text: mixed sample

text: Sample 13


E-MTAB-3312:Sample 5

characteristic: INSDC first public

text: public

text: E-MTAB-3312:Sample 5

text: ArrayExpress

text: AMA2, macrophages containing intracellular Leishmania, 24h post infection Protocols: To generate intracellular amastigotes, Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) were left to grow into stationary phase (from 1x10E5 to 2x10E7 cells/ml) and then incubated with BMDMs at a parasite to macrophage ratio of 20 for 2h before washing off remaining extracellular parasites. Infected macrophages were incubated 24h at 34°C prior to RNA extraction. For mapping of splice acceptor sites and determination of transcript abundances, polyadenylated RNA was purified from total RNA, converted to cDNA using random hexamer primers, sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: amastigote

text: Mus musculus

text: bone marrow macrophage

text: Leishmania mexicana and Mus musculus

text: mixed sample

text: mixed sample

text: Sample 5


E-MTAB-3312:Sample 12

text: public

text: E-MTAB-3312:Sample 12

text: ArrayExpress

characteristic: broker name

text: AXA3, axenic amastigotes, 24h after start of differentiation Protocols: Axenic amastigotes were generated by dilution of stationary phase Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) into Schneider’s Drosophila medium at pH 5.5 to a density of 3x10E6 cells/ml and incubation at 34°C for 24h prior to RNA extraction. For mapping of splice acceptor sites and determination of transcript abundances, polyadenylated RNA was purified from total RNA, converted to cDNA using random hexamer primers, sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: axenic amastigote

text: not applicable (outside host)

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 12


E-MTAB-3312:Sample 11

text: public

text: E-MTAB-3312:Sample 11

text: ArrayExpress

text: AXA2, axenic amastigotes, 24h after start of differentiation Protocols: Axenic amastigotes were generated by dilution of stationary phase Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) into Schneider’s Drosophila medium at pH 5.5 to a density of 3x10E6 cells/ml and incubation at 34°C for 24h prior to RNA extraction. For mapping of splice acceptor sites and determination of transcript abundances, polyadenylated RNA was purified from total RNA, converted to cDNA using random hexamer primers, sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: axenic amastigote

characteristic: developmental stage

text: not applicable (outside host)

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 11


E-MTAB-3312:Sample 17

text: public

text: E-MTAB-3312:Sample 17

text: ArrayExpress

text: AXA2, axenic amastigotes, 24h after start of differentiation; used to generate library enriched for transcript 3'ends Protocols: Axenic amastigotes were generated by dilution of stationary phase Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) into Schneider’s Drosophila medium at pH 5.5 to a density of 3x10E6 cells/ml and incubation at 34°C for 24h prior to RNA extraction. For determination of polyadenylation addition sites, polyadenylated RNA purified from total RNA was converted to cDNA using a 5’-T15VN-3’ oligonucleotide (V=A, G or C; N=T, A, G or C) primer to enrich for 3’ ends of transcripts. The cDNA was sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: axenic amastigote

text: not applicable (outside host)

characteristic: host

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 17


E-MTAB-3312:Sample 9

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3312:Sample 9

text: ArrayExpress

text: PRO2, cultured promastigotes in exponential growth phase Protocols: Promastigote-form L. mexicana (WHO strain MNYC/BZ/62/M379) were grown at 28°C in M199 medium (Life Technologies) supplemented with 2.2 g/L NaHCO3, 0.005% haemin, 40 mM 4-(2-Hydroxyethyl)piperazine-1-ethanesulfonic acid (HEPES) pH 7.4 and 10% FCS (Life Technologies 10500-064). Cells were maintained in exponential growth phase prior to RNA extraction. For mapping of splice acceptor sites and determination of transcript abundances, polyadenylated RNA was purified from total RNA, converted to cDNA using random hexamer primers, sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: promastigote

text: not applicable (outside host)

text: Leishmania mexicana

text: Leishmania mexicana

text: Leishmania mexicana

text: Sample 9


E-MTAB-3312:Sample 14

text: public

characteristic: INSDC status

text: E-MTAB-3312:Sample 14

text: ArrayExpress

text: AMA3, macrophages containing intracellular Leishmania, 24h post infection; used to generate library enriched for transcript 3'ends Protocols: To generate intracellular amastigotes, Leishmania mexicana promastigotes (WHO strain MNYC/BZ/62/M379) were left to grow into stationary phase (from 1x10E5 to 2x10E7 cells/ml) and then incubated with BMDMs at a parasite to macrophage ratio of 20 for 2h before washing off remaining extracellular parasites. Infected macrophages were incubated 24h at 34°C prior to RNA extraction. For determination of polyadenylation addition sites, polyadenylated RNA purified from total RNA was converted to cDNA using a 5’-T15VN-3’ oligonucleotide (V=A, G or C; N=T, A, G or C) primer to enrich for 3’ ends of transcripts. The cDNA was sheared and size selected for fragments ~200bp in length using the Illumina TruSeq RNA Sample Preparation Kit v2.

text: amastigote

text: Mus musculus

text: bone marrow macrophage

text: Leishmania mexicana and Mus musculus

text: mixed sample

text: mixed sample

text: Sample 14