text: UNIVERSITY OF SOUTHERN CALIFORNIA

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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tag: Namespace:UNIVERSITY OF SOUTHERN CALIFORNIA

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characteristic: description

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text: UNIVERSITY OF SOUTHERN CALIFORNIA

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text: UNIVERSITY OF SOUTHERN CALIFORNIA

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text: UNIVERSITY OF SOUTHERN CALIFORNIA

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text: UNIVERSITY OF SOUTHERN CALIFORNIA

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text: UNIVERSITY OF SOUTHERN CALIFORNIA

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text: male


text: public

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text: public

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text: Salix viminalis

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text: Salix viminalis

text: Salix viminalis

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text: public

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text: Salix viminalis

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text: Salix viminalis

text: female


text: public

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text: Salix viminalis

text: female


text: public

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text: Salix viminalis

text: Salix viminalis

text: female


text: public

text: osier

text: Offspring PopS5_278

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text: Salix viminalis

text: female


text: public

text: osier

text: Offspring PopS5_279

text: Salix viminalis

text: Salix viminalis

text: female


text: public

text: osier

text: Offspring PopS5_280

text: Salix viminalis

text: Salix viminalis

text: male


text: public

text: osier

text: Offspring PopS5_281

text: Salix viminalis

text: Salix viminalis

text: female


text: public

text: osier

text: Offspring PopS5_282

text: Salix viminalis

text: Salix viminalis

text: female


text: public

text: osier

text: Female Parent 78021

text: Salix viminalis

text: Salix viminalis

text: female


text: public

text: osier

text: Male Parent 81084

text: Salix viminalis

text: Salix viminalis

text: male


text: CBMSO

text: public

text: Bacterial metagenomic hyper saline environment

text: metagenomes

text: metagenomes

text: Uyuni bacteria Saltpan


text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: house mouse

text: Mus musculus

text: Mus musculus


Sample 1

text: Department of human genetics

text: public

text: Sample 1

tag: Namespace:Department of human genetics

text: human

text: Homo sapiens

text: Homo sapiens

text: Sample


Sample 2

text: Department of human genetics

text: public

text: Sample 2

text: human

text: Homo sapiens

text: Homo sapiens

text: Sample


text: Iowa State University

text: public

tag: Namespace:Iowa State University

unit: week

characteristic: age

characteristic: basophil

text: ArrayExpress

characteristic: broker name

text: whole blood

characteristic: cell type

text: pig

text: Protocols: All pigs were from parity 2 of generation 9 of the two lines divergently selected for residual feed intake: the low and high RFI lines. Blood samples were collected from the jugular vein into TempusTM Blood RNA tubes (Life Technologies, Grand Island, NY) for long-term storage at -80 C from 233 post-weaning piglets of the two lines in this age range. Meanwhile, blood from those animals was also collected into EDTA tubes (BD, Franklin Lakes, NJ) and kept at 4 C before CBC tests, which were performed on the bleeding day, if possible, or the next morning. At 107.0 8.3 (mean standard deviation) days of age and 42.2 7.2 kg of body weight (BW), 88 gilts and 78 barrows were randomly assigned to 12 mixed-line, mixed-sex finishing pens with electronic single-space feeders (FIRE, Osborne Industries Inc., Osborne, KS) for feed efficiency test, with 6 pens being randomly assigned to either of two diets: a high-fiber, low-energy diet (HFD) and a low-fiber, high-energy diet (LFD). The animals on feed efficiency test consisted of 21 barrows and 22 gilts from the low RFI line plus 14 barrows and 23 gilts from the high RFI line fed the HFD, and 23 barrows and 23 gilts from the low RFI line plus 20 barrows and 20 gilts from the high RFI line fed the LFD. All pigs had ad libitum access to feed and water. Individual feed intake was real-time recorded, body weight was recorded biweekly, and backfat (BF) depth above the 10th rib and loin muscle area were recorded at the end of the test, when the pigs were 227.0 1.4 days of age and 127.7 8.8 kg of body weight. RFI of individual pigs were calculated. In detail, for the low RFI line, we selected eight samples from animals with extremely low RFI values on the LFD and eight samples from animals with extremely low RFI values on the HFD (designated as low RFI group); while for the high RFI line, we selected eight samples from animals with extremely high RFI values on the LFD and eight samples from animals with extremely high RFI values on the HFD (designated as high RFI group) (Figure 1). Total RNA extraction of the 32 samples was processed in four batches such that for each batch, two samples were randomly selected from each line by diet combination. Within each batch, the processing order of samples was randomized beforehand and followed in all subsequent procedures where blocking was necessary. The total RNA was extracted from blood samples using preserved blood RNA purification kit I (Norgen Biotek Corp, Thorold, Ontario) by following the kits manual. On-column DNA digestion was performed as described using DNase I (Qiagen, Valencia, CA). Globin transcripts (HBB [ENSSSCG00000007978] and HBA [ENSSSCG00000014725]) were depleted by following an RNase H-mediated method [40]. The quantity and integrity of the RNA were determined by using Nanodrop 2000 (Thermo Scientific, Waltham, MA) and Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA) before and after globin depletion. Library construction and sequencing were performed by the DNA facility at Iowa State University. Briefly, the RNA-seq libraries were constructed using the Illumina TruSeq RNA Sample Preparation Kit v2 (Illumina, San Diego, CA) according to manufacturers instructions. For each sample, poly (A)-containing transcripts was enriched with oligo-dT-coated magnetic beads from 0.7 to 2 g of total RNA with globin transcript depleted. The enriched RNA was fragmented by heat and reverse transcribed with hexamer random primers. For each sample, adapters with unique barcodes were ligated to the end-polished cDNA fragments. The libraries were linearly amplified by PCR, size selected and quantitated. The individual libraries were diluted to 2 nM and pooled in approximately equimolar amounts according to the processing batches mentioned above with 8 libraries per pool, except for one pool of 7 libraries.

text: postweaning

characteristic: developmental stage

text: low-fiber, high energy diet

characteristic: diet fed

characteristic: eosinophil

text: ad libitum

characteristic: growth condition

characteristic: lymphocyte

characteristic: monocyte

characteristic: neutrophil

text: Sus scrofa

text: Sus scrofa

text: high RFI

characteristic: phenotype

characteristic: rfi value

characteristic: rna concentration after globin depletion

unit: nanogram per milliliter

characteristic: rna concentration before globin depletion

characteristic: rna processing batch

characteristic: rna rin values after globin depletion

characteristic: rna rin values before globin depletion

text: Sus scrofa

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: basophil

text: ArrayExpress

text: whole blood

text: pig

characteristic: common name

characteristic: description

text: postweaning

text: low-fiber, high energy diet

text: ad libitum

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: low RFI

text: Sus scrofa

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

text: Iowa State University

text: public

text: ArrayExpress

characteristic: broker name

text: whole blood

characteristic: cell type

text: pig

text: postweaning

characteristic: developmental stage

text: high-fiber, low energy diet

characteristic: diet fed

characteristic: eosinophil

text: ad libitum

characteristic: growth condition

characteristic: lymphocyte

characteristic: monocyte

characteristic: neutrophil

text: Sus scrofa

text: Sus scrofa

text: low RFI

characteristic: phenotype

characteristic: rfi value

characteristic: rna concentration after globin depletion

characteristic: rna concentration before globin depletion

characteristic: rna processing batch

characteristic: rna rin values after globin depletion

characteristic: rna rin values before globin depletion

text: Sus scrofa

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: basophil

text: ArrayExpress

text: whole blood

text: pig

characteristic: common name

characteristic: description

text: postweaning

text: high-fiber, low energy diet

text: ad libitum

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: high RFI

text: Sus scrofa

text: female

characteristic: sex

characteristic: title


text: Klebsiella pneumoniae

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: strain


text: Escherichia coli

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF WARWICK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF WARWICK

text: C105KSO13 GENOME

text: Clostridium sp. C105KSO13

text: Clostridium sp. C105KSO13


text: UNIVERSITY OF WARWICK

text: public

characteristic: Submitter Id

text: Clostridium sp. C105KSO13

text: Clostridium sp. C105KSO13


E-MTAB-4182:Glucose 1

text: AIMST University

text: public

text: E-MTAB-4182:Glucose 1

tag: Namespace:AIMST University

text: ArrayExpress

characteristic: broker name

text: Protocols: P. aeruginosa culture was inoculated into Erlenmeyer flasks containing 100 ml minimal medium supplemented with 0.2% (w/v) glucose or 0.25 g of powdered PE as its sole carbon source. The cultures were placed in a 37C shaking incubator and left to agitate at 180 rpm till the culture attained its mid-logarithmic phase. RNA extracts were subjected to ribosomal depletion using the Ribo-Zero Magnetic Kit (Epicentre, USA) prior to cDNA synthesis using TruSeq RNA Sample Preparation Kit (Illumina, USA) and SuperScript II Reverse Transcriptase (Invitrogen, USA). Following this, a minimum of 20 ng cDNA was fragmented using Covaris S220 (Covaris Inc., USA) to a targeted size of < 500 bp. The fragmented cDNAs were then end-repaired, ligated to Illumina TruSeq Adapters and PCR-enriched using TruSeq RNA Sample Preparation Kit. The final sequencing libraries were quantified using the KAPA kit (KAPA Biosystem, USA) on a Stratagene Mx-3005P qPCR system (Agilent Technologies, USA) and the library sizes were confirmed using Agilent Bioanalyzer High Sensitivity DNA Chip (Agilent Technologies, USA).

characteristic: description

text: P.aeruginosa was grown in minimal medium supplemented with 0.2% (w/v) glucose.

characteristic: growth condition

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Glucose 1


E-MTAB-4182:Glucose 2

text: AIMST University

text: public

text: E-MTAB-4182:Glucose 2

text: ArrayExpress

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Glucose 2

characteristic: title


E-MTAB-4182:PE 1

text: AIMST University

text: public

text: E-MTAB-4182:PE 1

text: ArrayExpress

text: P.aeruginosa was grown in minimal medium supplemented with 0.25 g powdered phosphatidylethanolamine.

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: PE 1


E-MTAB-4182:PE 2

text: AIMST University

text: public

text: E-MTAB-4182:PE 2

text: ArrayExpress

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: PE 2


text: University of Athens

text: public

tag: Namespace:University of Athens

text: Thermococcus chitonophagus

text: Thermococcus chitonophagus

text: Genome sequence


text: University of Lubeck

text: public

tag: Namespace:University of Lubeck

text: human

characteristic: common name

text: Patient 1

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient 1


characteristic: ENA-CHECKLIST

text: University of Lubeck

text: public

text: human

text: Patient 1

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient 1


text: University of Lubeck

text: public

text: human

text: Patient 1

text: Homo sapiens

text: Homo sapiens

text: Back Patient 1


text: University of Lubeck

text: public

text: human

text: Patient 1

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient 1


text: University of Lubeck

text: public

text: human

text: Patient 1

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient 1


text: University of Lubeck

text: public

text: human

text: Patient 2

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient 2


text: University of Lubeck

text: public

text: human

text: Patient 2

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient 2


text: University of Lubeck

text: public

text: human

text: Patient 2

text: Homo sapiens

text: Homo sapiens

text: Back Patient 2


text: University of Lubeck

text: public

text: human

text: Patient 2

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient 2


text: University of Lubeck

text: public

text: human

text: Patient 2

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient 2


text: University of Lubeck

text: public

text: human

text: Patient 3

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient 3


text: University of Lubeck

text: public

text: human

text: Patient 3

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient 3


text: University of Lubeck

text: public

text: human

text: Patient 3

text: Homo sapiens

text: Homo sapiens

text: Back Patient 3


text: University of Lubeck

text: public

text: human

text: Patient 3

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient 3


text: University of Lubeck

text: public

text: human

text: Patient 3

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient 3


text: University of Lubeck

text: public

text: human

text: Patient 4

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient 4


text: University of Lubeck

text: public

text: human

text: Patient 4

text: Homo sapiens

text: Homo sapiens

text: Back Patient 4


text: University of Lubeck

text: public

text: human

text: Patient 4

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient 4


text: University of Lubeck

text: public

text: human

text: Patient 4

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient 4


text: University of Lubeck

text: public

text: human

text: Patient 5

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient 5


text: University of Lubeck

text: public

text: human

text: Patient 5

text: Homo sapiens

text: Homo sapiens

text: Back Patient 5


text: University of Lubeck

text: public

text: human

text: Patient 5

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient 5


text: University of Lubeck

text: public

text: human

text: Patient 5

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient 5


text: University of Lubeck

text: public

text: human

text: Control 2

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 2


text: University of Lubeck

text: public

text: human

text: Control 2

text: Homo sapiens

text: Homo sapiens

text: Elbow Control 2


text: University of Lubeck

text: public

text: human

text: Control 2

text: Homo sapiens

text: Homo sapiens

text: Back Control 2


text: University of Lubeck

text: public

text: human

text: Control 2

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 2


text: University of Lubeck

text: public

text: human

text: Control 3

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 3


text: University of Lubeck

text: public

text: human

text: Control 3

text: Homo sapiens

text: Homo sapiens

text: Elbow Control 3


text: University of Lubeck

text: public

text: human

text: Control 3

text: Homo sapiens

text: Homo sapiens

text: Back Control 3


text: University of Lubeck

text: public

text: human

text: Control 3

text: Homo sapiens

text: Homo sapiens

text: Perilesional Control 3


text: University of Lubeck

text: public

text: human

text: Control 3

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 3


text: University of Lubeck

text: public

text: human

text: Control 1

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 1


text: University of Lubeck

text: public

text: human

text: Control 1

text: Homo sapiens

text: Homo sapiens

text: Perilesional Control 1


text: University of Lubeck

text: public

text: human

text: Control 1

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 1


text: University of Lubeck

text: public

text: human

text: Control 5

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 5


text: University of Lubeck

text: public

text: human

text: Control 5

text: Homo sapiens

text: Homo sapiens

text: Elbow Control 5


text: University of Lubeck

text: public

text: human

text: Control 5

text: Homo sapiens

text: Homo sapiens

text: Perilesional Control 5


text: University of Lubeck

text: public

text: human

text: Control 5

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 5


text: University of Lubeck

text: public

text: human

text: Patient 6

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient 6


text: University of Lubeck

text: public

text: human

text: Patient 6

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient 6


text: University of Lubeck

text: public

text: human

text: Patient 6

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient 6


text: University of Lubeck

text: public

text: human

text: Patient 6

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient 6


text: University of Lubeck

text: public

text: human

text: Control 4

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 4


text: University of Lubeck

text: public

text: human

text: Control 4

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 4


text: University of Lubeck

text: public

text: human

text: Control 6

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 6


text: University of Lubeck

text: public

text: human

text: Control 6

text: Homo sapiens

text: Homo sapiens

text: Elbow Control 6


text: University of Lubeck

text: public

text: human

text: Control 6

text: Homo sapiens

text: Homo sapiens

text: Perilesional Control 6


text: University of Lubeck

text: public

text: human

text: Control 6

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 6


text: University of Lubeck

text: public

text: human

text: Control 7

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 7


text: University of Lubeck

text: public

text: human

text: Control 7

text: Homo sapiens

text: Homo sapiens

text: Elbow Control 7


text: University of Lubeck

text: public

text: human

text: Control 7

text: Homo sapiens

text: Homo sapiens

text: Perilesional Control 7


text: University of Lubeck

text: public

text: human

text: Control 7

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 7


text: University of Lubeck

text: public

text: human

text: Control 8

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 8


text: University of Lubeck

text: public

text: human

text: Control 8

text: Homo sapiens

text: Homo sapiens

text: Elbow Control 8


text: University of Lubeck

text: public

text: human

text: Control 8

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 8


text: University of Lubeck

text: public

text: human

text: Control 8

text: Homo sapiens

text: Homo sapiens

text: Perilesional Control 8


text: University of Lubeck

text: public

text: human

text: Patient 7

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient 7


text: University of Lubeck

text: public

text: human

text: Patient 7

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient 7


text: University of Lubeck

text: public

text: human

text: Patient 7

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient 7


text: University of Lubeck

text: public

text: human

text: Patient 7

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient 7


text: University of Lubeck

text: public

text: human

text: Patient 8

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient 8


text: University of Lubeck

text: public

text: human

text: Patient 8

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient 8


text: University of Lubeck

text: public

text: human

text: Patient 8

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient 8


text: University of Lubeck

text: public

text: human

text: Patient 8

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient 8


text: University of Lubeck

text: public

text: human

text: Control 9

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 9


text: University of Lubeck

text: public

text: human

text: Control 9

text: Homo sapiens

text: Homo sapiens

text: Elbow Control 9


text: University of Lubeck

text: public

text: human

text: Control 10

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 10


text: University of Lubeck

text: public

text: human

text: Control 10

text: Homo sapiens

text: Homo sapiens

text: Elbow Control 10


text: University of Lubeck

text: public

text: human

text: Control 10

text: Homo sapiens

text: Homo sapiens

text: Back Control 10


text: University of Lubeck

text: public

text: human

text: Control 10

text: Homo sapiens

text: Homo sapiens

text: Perilesional Control 10


text: University of Lubeck

text: public

text: human

text: Control 10

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 10


text: University of Lubeck

text: public

text: human

text: Control 11

text: Homo sapiens

text: Homo sapiens

text: Forehead Control 11


text: University of Lubeck

text: public

text: human

text: Control 11

text: Homo sapiens

text: Homo sapiens

text: Elbow Control 11


text: University of Lubeck

text: public

text: human

text: Control 11

text: Homo sapiens

text: Homo sapiens

text: Back Control 11


text: University of Lubeck

text: public

text: human

text: Control 11

text: Homo sapiens

text: Homo sapiens

text: Perilesional Control 11


text: University of Lubeck

text: public

text: human

text: Control 11

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Control 11


text: University of Lubeck

text: public

text: human

text: Patient 9

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient 9


text: University of Lubeck

text: public

text: human

text: Patient 9

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient 9


text: University of Lubeck

text: public

text: human

text: Patient 9

text: Homo sapiens

text: Homo sapiens

text: Back Patient 9


text: University of Lubeck

text: public

text: human

text: Patient 9

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient 9


text: University of Lubeck

text: public

text: human

text: Patient 9

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient 9


text: University of Lubeck

text: public

text: human

text: Patient Ki1

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient Ki1


text: University of Lubeck

text: public

text: human

text: Patient Ki1

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient Ki1


text: University of Lubeck

text: public

text: human

text: Patient Ki1

text: Homo sapiens

text: Homo sapiens

text: Back Patient Ki1


text: University of Lubeck

text: public

text: human

text: Patient Ki1

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient Ki1


text: University of Lubeck

text: public

text: human

text: Patient Ki1

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient Ki1


text: University of Lubeck

text: public

text: human

text: Patient Ki2

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient Ki2


text: University of Lubeck

text: public

text: human

text: Patient Ki2

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient Ki2


text: University of Lubeck

text: public

text: human

text: Patient Ki2

text: Homo sapiens

text: Homo sapiens

text: Perilesional Patient Ki2


text: University of Lubeck

text: public

text: human

text: Patient Ki2

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient Ki2


text: University of Lubeck

text: public

text: human

text: Control 12

text: Homo sapiens

text: Homo sapiens

text: Forehead Con12


text: University of Lubeck

text: public

text: human

text: Control 12

text: Homo sapiens

text: Homo sapiens

text: Elbow Con12


text: University of Lubeck

text: public

text: human

text: Control 12

text: Homo sapiens

text: Homo sapiens

text: Back Con12


text: University of Lubeck

text: public

text: human

text: Control 12

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Con12


text: University of Lubeck

text: public

text: human

text: Control 12

text: Homo sapiens

text: Homo sapiens

text: Perilesional Con12


text: University of Lubeck

text: public

text: human

text: Patient Ki3

text: Homo sapiens

text: Homo sapiens

text: Forehead Patient Ki3


text: University of Lubeck

text: public

text: human

text: Patient Ki3

text: Homo sapiens

text: Homo sapiens

text: Elbow Patient Ki3


text: University of Lubeck

text: public

text: human

text: Patient Ki3

text: Homo sapiens

text: Homo sapiens

text: Back Patient Ki3


text: University of Lubeck

text: public

text: human

text: Patient Ki3

text: Homo sapiens

text: Homo sapiens

text: Nonlesional Patient Ki3


text: CSISP

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: M. tuberculosis Ethiopia DNA


text: Yeast

characteristic: ArrayExpress-Phenotype

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-Species

text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Plasmodium Falciparum

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


characteristic: External Id

text: Genoscope CEA

characteristic: INSDC center name

text: public

tag: Namespace:Genoscope CEA

text: Agrobacterium tumefaciens str. CFBP 5771

text: CFBP 5771

characteristic: strain

text: Prokaryotic genome sequencing


text: Genoscope CEA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Agrobacterium genomosp. 1 str. S56

text: Agrobacterium genomosp. 1 str. S56

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Agrobacterium genomosp. 1 str. TT111

text: Agrobacterium genomosp. 1 str. TT111

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium genomosp. 2 str. CFBP 5494

text: CFBP 5494

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium genomosp. 3 str. CFBP 6623

text: CFBP 6623

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium tumefaciens str. CFBP 5621

text: CFBP 5621

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium tumefaciens str. B6

text: Agrobacterium tumefaciens str. B6

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium tumefaciens str. Kerr 14

text: Agrobacterium tumefaciens str. Kerr 14

text: Kerr 14

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium genomosp. 5 str. CFBP 6626

text: CFBP 6626

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium genomosp. 6 str. NCPPB 925

text: NCPPB 925

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium genomosp. 7 str. NCPPB 1641

text: NCPPB 1641

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium genomosp. 7 str. RV3

text: Agrobacterium genomosp. 7 str. RV3

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium genomosp. 7 str. Zutra 3/1

text: Zutra 3-1

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium fabrum str. J-07

text: Agrobacterium fabrum str. J-07

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium genomosp. 9 str. Hayward 0363

text: Prokaryotic genome sequencing


text: Genoscope CEA

text: public

text: Agrobacterium genomosp. 13 str. CFBP 6927

text: CFBP 6927

text: Prokaryotic genome sequencing


text: UNIVERSIDAD AUTONOMA DE MADRID

text: public

tag: Namespace:UNIVERSIDAD AUTONOMA DE MADRID

text: metagenome

text: metagenome

text: PoxMouse


text: Federal University of Bahia

text: public

tag: Namespace:Federal University of Bahia

text: human whipworm

text: Total RNA was extracted from pooled male and female adult worms and then subjected to depletion of ribosomal RNA by denaturing high-performance liquid chromatography (DHPLC).

characteristic: description

text: Adult worm

characteristic: dev stage

text: Trichuris trichiura

text: Trichuris trichiura

text: Mixed - male and female

characteristic: sex


text: UNIVERSITY OF WARWICK

text: public

text: Clostridium C105KSO14

text: Clostridium sp. C105KSO14

characteristic: organism

text: Clostridium sp. C105KSO14

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSIDAD AUTONOMA DE MADRID

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: PoxCaeca


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WARWICK

text: public

text: C105KS015 reads

text: Clostridium sp. C105KSO15

text: Clostridium sp. C105KSO15


characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF FISHERY SCIENCE

text: public

tag: Namespace:CHINESE ACADEMY OF FISHERY SCIENCE

text: Amur ide

text: Leuciscus waleckii

text: Leuciscus waleckii

text: Amur ide


characteristic: External Id

text: TU MUENCHEN

text: public

tag: Namespace:TU MUENCHEN

text: cattle

text: Fleckvieh bull

text: Bos taurus

text: Bos taurus

text: male

text: semen

characteristic: tissue type


text: Harper Adams University

characteristic: INSDC center name

text: public

tag: Namespace:Harper Adams University

text: rape

text: gDNA from rape roots

text: Brassica napus

text: Brassica napus


text: CEES

characteristic: INSDC first public

text: public

text: Neolamprologus gracilis

text: Neolamprologus gracilis

text: Neolamprologus gracilis


text: CEES

characteristic: INSDC last update

text: public

text: Neolamprologus marunguensis

text: Neolamprologus marunguensis

text: Neolamprologus marunguensis


text: CEES

text: public

characteristic: INSDC status

text: Neolamprologus olivaceous

text: Neolamprologus olivaceous

text: Neolamprologus olivaceous


text: CEES

text: public

characteristic: SRA accession

text: Neolamprologus pulcher

text: Neolamprologus pulcher

text: Neolamprologus pulcher


text: TU MUENCHEN

text: public

characteristic: Submitter Id

text: cattle

text: bulldog animal

text: Bos taurus

text: Bos taurus

text: female

text: ear tissue


text: UNIVERSITY OF MANCHESTER

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: human

text: Partial human HVR1 region

characteristic: description

text: Homo sapiens

text: Homo sapiens


tag: attribute

text: UNIVERSITY OF MANCHESTER

text: public

text: human

text: Partial HVR1 region, direct sanger sequence

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF MANCHESTER

text: public

text: human

text: Partial HVR1 region, Sanger sequenced paired reads

text: Homo sapiens

text: Homo sapiens


text: CAM

text: public

text: Wild-caught male: 3.9,-76.633. Collection: Camilo Salazar

text: Heliconius melpomene vulcanus

text: Heliconius melpomene vulcanus

text: Heliconius melpomene vulcanus.CS10


text: CAM

text: public

text: Heliconius melpomene vulcanus

text: Heliconius melpomene vulcanus

text: Heliconius melpomene vulcanus.CS11


text: CAM

text: public

text: Wild-caught male: 4.213,-73.803 Collection: Camilo Salazar

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene.hmm3


text: CAM

text: public

text: Wild-caught male: 5.617,-72.3 Collection: Camilo Salazar

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene.hmm6


text: CAM

text: public

text: Wild-caught male: 1.178,-76.665 Collection: Camilo Salazar

text: Heliconius melpomene mocoa

text: Heliconius melpomene mocoa

text: Heliconius melpomene mocoa.CS16


text: CAM

text: public

text: Heliconius melpomene mocoa

text: Heliconius melpomene mocoa

text: Heliconius melpomene mocoa.CS17


text: CAM

text: public

text: Wild-caught male: 1.814,-75.669 Collection: Camilo Salazar

text: Heliconius melpomene malleti

text: Heliconius melpomene malleti

text: Heliconius melpomene malleti.CS21


text: CAM

text: public

text: Wild-caught male: 1.61,-75.667 Collection: Camilo Salazar

text: Heliconius melpomene malleti

text: Heliconius melpomene malleti

text: Heliconius melpomene malleti.CS22


text: CAM

text: public

text: Wild-caught male: 1.751,-75.632 Collection: Camilo Salazar

text: Heliconius melpomene malleti

text: Heliconius melpomene malleti

text: Heliconius melpomene malleti.CS24


text: CAM

text: public

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene.CS25


text: CAM

text: public

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene.CS26


text: CAM

text: public

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene

text: Heliconius melpomene melpomene.CS27


text: CAM

text: public

text: Wild-caught male: -6.29,-76.229 Collection: Jiggins

text: Heliconius wallacei

text: Heliconius wallacei

text: Heliconius wallacei.CAM008687


text: CAM

text: public

text: Wild-caught male: -6.458,-76.288 Collection: Jiggins

text: Heliconius burneyi

text: Heliconius burneyi

text: Heliconius burneyi.CAM008560


text: CAM

text: public

text: Wild-caught Male 9.122, -79.715 Collection: Jiggins

text: Heliconius erato demophoon

text: Heliconius erato demophoon

text: Heliconius erato demophoon.CAM000618


text: CAM

text: public

text: Wild-caught Male 9.145,-79.729 Collection: Jiggins

text: Heliconius erato demophoon

text: Heliconius erato demophoon

text: Heliconius erato demophoon.CAM002979


text: CAM

text: public

text: Heliconius erato demophoon

text: Heliconius erato demophoon

text: Heliconius erato demophoon.CAM002980


text: CAM

text: public

text: Heliconius erato demophoon

text: Heliconius erato demophoon

text: Heliconius erato demophoon.CAM002981


text: public

tag: Namespace:Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences

text: ArrayExpress

characteristic: broker name

text: Protocols: Both E+ and E- A. inebrians seeds were incubated at 5, 10, 15, 20 and 25 oC in Petri dishes (15-cm diameter). After imbibition, germination rate of seeds was monitored every 24 h during 24-192 h. The seeds showing radical extension of 1 mm were scored and removed from the Petri dishes. After 25 d, when no additional seeds had germinated for 5 d, the germination experiment was terminated. Each treatment was repeated five times independently with 100 seeds in each replicate. Both E+ and E- A. inebrians seeds were sown on filter paper and grown at 10 oC in constant temperature incubators for two days. Total RNAs were isolated from about 10 g of either E+ or E- drunken horse grass seeds using the TRIzol reagent (Invitrogen) and incubated with DNase I (Takara) to remove residual genomic DNA according to manufacturers instruction. The concentration and quantification of all RNA were determined spectrophotometrically.

text: N. gansuense

characteristic: infect

text: Achnatherum inebrians

text: Achnatherum inebrians

text: seeds

characteristic: organism part

text: Achnatherum inebrians

text: E+


text: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences

text: public

text: ArrayExpress

text: Non-infected

text: Achnatherum inebrians

characteristic: organism

text: Achnatherum inebrians

text: seeds

text: Achnatherum inebrians

text: E-

characteristic: title


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Institute of Technology, University of Tartu

text: ArrayExpress

text: Protocols: Lysogeny broth (LB) and LB agar plates were used for growth. Liquid cultures were grown on Infors HT Multitron shaker, at 190 RPM, at 37C.Overnight cultures were started from a fresh colony and grown for 16-17h. For growing the logarithmic phase and stationary phase samples, the overnight cultures were diluted 1000-fold into 100 ml of LB in 1 l flasks. At OD600nm 0.2, 25 ml of the culture was used for the log phase RNA extraction. The remaining culture was grown for 24 h and used for the stationary phase RNA extraction. The toxin expression was induced in strain BW25113 harboring either plasmids pSC228 and pSC3326 for the induction of MazF and MazE, or pTX3 and pAT3 for the induction of MqsR and MqsA. Ampicillin 30 g/ml or 100 g/ml and chloramphenicol 50 g/ml were used to maintain the plasmids in the culture. The medium of overnight cultures was supplemented with 0.2% glucose to avoid toxin leakage and 1 mM IPTG to induce antitoxin. The overnight cultures were diluted 1000-fold into 200 ml of LB in 1 l flasks. At OD600nm 0.2, 1mM L-arabinose was added to induce the toxin and incubation was continued for 2h. 25-50 ml of culture was used for separating total RNA from log phase and toxin overexpression cultures. Cells were rapidly collected by centrifugation at 20C for 5 min at 5000 x g and frozen in liquid nitrogen. Frozen cells were stored at -80C. For RNA isolation cells were resuspended in 600 ul of ice-cold 1x TEN solution (10 mM Tris pH 7.5, 1 mM EDTA, 100 mM NaCl) and added quickly to the 600 ul preheated phenol-1% SDS solution (pH 4.5). Samples were mixed gently by inverting tubes a few times, incubated for 5 min at 67C, and were re-inverted after each minute during the incubation. Lysates were centrifuged for 10 min at 4C at 15 700 g. Since here, all preparations were done on ice. 450 ul of aqueous phase was collected and extracted with 600 ul of phenol:chloroform, mixed vigorously on vortex, centrifuged as above and further extracted with 500 ul of chloroform. After centrifugation for 1 min at 4C at 15 700 g, 350 ul of aqueous phase was allocated, 0.1 volumes of 3M RNase free sodium acetate (pH 5.2) was added, and RNA was precipitated with 1.2 volumes of ice-cold isopropanol during 30 min incubation at -20C. Tubes were then centrifuged for 40 min at 15 700 g, RNA pellets were washed with 700 ul of 75% ethanol and centrifuged for 5 min at 12 000 g. Pellets were air dried at room temperature for 10 min, dissolved in ddH20 and stored at - 80C. For the stationary phase RNA isolation, bacteria were collected from 5 ml samples, washed with 10 ml of 1xPBS before the hot phenol extraction, and MaXtract Low (Qiagen) was used for better phase separation after the phenol:chloroform (1:1) extraction. To construct the 3-end cDNA library, the total RNA samples were first treated either with T4 polynucleotide kinase or mock treated without the enzyme. This was followed by poly(A)-tailing using poly(A) polymerase. The samples were then fragmented with ultrasound (4 pulses of 30 sec at 4C). The 3'-RNA fragments, which carry poly(A)-tails, were captured using oligo-dT chromatography. The newly generated 5'-ends were dephosphoylated using Antarctic Phosphatase (NEB) and rephosphorylated with PNK. Then, RNA adapters containing barcode sequences were ligated to the 5 -phosphates of the 3'-RNA fragments. First-strand cDNA synthesis was performed using an oligo(dT)-adapter primer and M-MLV reverse transcriptase. The resulting cDNA was PCR-amplified using a high fidelity DNA polymerase (13-15 cycles). The cDNA was purified using the Agencourt AMPure XP kit (Beckman Coulter Genomics) and analyzed by capillary electrophoresis.

text: stationary phase

characteristic: growth condition

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing

characteristic: sequencing library type

text: MG1655 rna, rnb::Tn10, rnr::kan, pnp200

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology, University of Tartu

text: public

text: ArrayExpress

text: stationary phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing

text: MG1655 rna, rnb::Tn10, rnr::kan, pnp200

text: Polynucleotide Kinase

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Protocols: Lysogeny broth (LB) and LB agar plates were used for growth. Liquid cultures were grown on Infors HT Multitron shaker, at 190 RPM, at 37C.Overnight cultures were started from a fresh colony and grown for 16-17h. For growing the logarithmic phase and stationary phase samples, the overnight cultures were diluted 1000-fold into 100 ml of LB in 1 l flasks. At OD600nm 0.2, 25 ml of the culture was used for the log phase RNA extraction. The remaining culture was grown for 24 h and used for the stationary phase RNA extraction. The toxin expression was induced in strain BW25113 harboring either plasmids pSC228 and pSC3326 for the induction of MazF and MazE, or pTX3 and pAT3 for the induction of MqsR and MqsA. Ampicillin 30 g/ml or 100 g/ml and chloramphenicol 50 g/ml were used to maintain the plasmids in the culture. The medium of overnight cultures was supplemented with 0.2% glucose to avoid toxin leakage and 1 mM IPTG to induce antitoxin. The overnight cultures were diluted 1000-fold into 200 ml of LB in 1 l flasks. At OD600nm 0.2, 1mM L-arabinose was added to induce the toxin and incubation was continued for 2h. 25-50 ml of culture was used for separating total RNA from log phase and toxin overexpression cultures. Cells were rapidly collected by centrifugation at 20C for 5 min at 5000 x g and frozen in liquid nitrogen. Frozen cells were stored at -80C. For RNA isolation cells were resuspended in 600 ul of ice-cold 1x TEN solution (10 mM Tris pH 7.5, 1 mM EDTA, 100 mM NaCl) and added quickly to the 600 ul preheated phenol-1% SDS solution (pH 4.5). Samples were mixed gently by inverting tubes a few times, incubated for 5 min at 67C, and were re-inverted after each minute during the incubation. Lysates were centrifuged for 10 min at 4C at 15 700 g. Since here, all preparations were done on ice. 450 ul of aqueous phase was collected and extracted with 600 ul of phenol:chloroform, mixed vigorously on vortex, centrifuged as above and further extracted with 500 ul of chloroform. After centrifugation for 1 min at 4C at 15 700 g, 350 ul of aqueous phase was allocated, 0.1 volumes of 3M RNase free sodium acetate (pH 5.2) was added, and RNA was precipitated with 1.2 volumes of ice-cold isopropanol during 30 min incubation at -20C. Tubes were then centrifuged for 40 min at 15 700 g, RNA pellets were washed with 700 ul of 75% ethanol and centrifuged for 5 min at 12 000 g. Pellets were air dried at room temperature for 10 min, dissolved in ddH20 and stored at - 80C. For the stationary phase RNA isolation, bacteria were collected from 5 ml samples, washed with 10 ml of 1xPBS before the hot phenol extraction, and MaXtract Low (Qiagen) was used for better phase separation after the phenol:chloroform (1:1) extraction. To construct the 5'-end cDNA library, the total RNA samples were first treated with either tobacco acid pyrophosphatase (Epicentre), T4 polynucleotide kinase (NEB), or left untreated. Afterwards, an RNA adapter was ligated to the 5'-monophosphates of the RNA fragments. First-strand cDNA synthesis was primed with an N6 randomized primer and performed by M-MLV reverse transcriptase. Then, Illumina adapters containing barcode sequences were ligated to the 5'-ends of the antisense cDNA. The adapters had two random nucleotides at the 3-end to diminish the ligation bias. The cDNA was finally amplified with PCR (14 to 18 cycles) using a 5'-biotinylated primer and a proof reading enzyme. For Illumina sequencing, 300 500 bp long 5' fragments were isolated from the full-length cDNAs. For this purpose, the cDNA preparations were degraded using NEBNext dsDNA Fragmentase and the 5'-cDNA fragments were then bound to streptavidin magnetic beads. The bound cDNAs were blunted and the 3' Illumina sequencing adapter was ligated to the 3'-ends of the cDNA fragments. The bead-bound cDNAs were finally PCR-amplified (4-7 cycles).

text: stationary phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

text: MG1655 rna, rnb::Tn10, rnr::kan, pnp200


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: description

text: stationary phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

text: MG1655 rna, rnb::Tn10, rnr::kan, pnp200

text: Polynucleotide Kinase


text: public

text: ArrayExpress

text: stationary phase

text: Escherichia coli K-12

characteristic: organism

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

text: MG1655 rna, rnb::Tn10, rnr::kan, pnp200

characteristic: title

text: Tobacco Acid Pyrophosphatase


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: MazF induction

characteristic: growth condition

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing


text: public

text: ArrayExpress

text: MazF induction

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing

characteristic: sequencing library type

characteristic: strain

text: Polynucleotide Kinase


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: MazF induction

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing


characteristic: External Id

text: public

text: ArrayExpress

text: MazF induction

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

text: Polynucleotide Kinase

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: MazF induction

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

text: Tobacco Acid Pyrophosphatase


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: log phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: log phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing

text: Polynucleotide Kinase


text: public

text: ArrayExpress

characteristic: broker name

characteristic: description

text: log phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing


text: public

text: ArrayExpress

text: log phase

text: Escherichia coli K-12

characteristic: organism

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

characteristic: title

text: Polynucleotide Kinase


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: log phase

characteristic: growth condition

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

text: Tobacco Acid Pyrophosphatase


text: public

text: ArrayExpress

text: stationary phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing

characteristic: sequencing library type

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: stationary phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing

text: Polynucleotide Kinase


characteristic: External Id

text: public

text: ArrayExpress

text: stationary phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing


characteristic: INSDC center name

text: public

text: ArrayExpress

text: stationary phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

text: Polynucleotide Kinase

characteristic: treatment


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: stationary phase

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

text: Tobacco Acid Pyrophosphatase


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: MqsR induction

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: MqsR induction

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 3' end sequencing

text: Polynucleotide Kinase


text: public

text: ArrayExpress

characteristic: description

text: MqsR induction

text: Escherichia coli K-12

characteristic: organism

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: MqsR induction

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

characteristic: title

text: Polynucleotide Kinase


text: public

text: ArrayExpress

text: MqsR induction

characteristic: growth condition

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: 5' end sequencing

characteristic: sequencing library type

text: Tobacco Acid Pyrophosphatase


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF SOUTH BOHEMIA

text: public

tag: Namespace:UNIVERSITY OF SOUTH BOHEMIA

text: Tremblaya princeps from Maconellicoccus hirsutus

text: Candidatus Tremblaya princeps

text: Candidatus Tremblaya princeps

text: Tremblaya princeps MHIR


TPFVIR

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF SOUTH BOHEMIA

text: public

text: TPFVIR

text: Tremblaya princeps from Ferrisia virgata

text: Candidatus Tremblaya princeps

text: Candidatus Tremblaya princeps

text: Tremblaya princeps FVIR


characteristic: External Id

text: UNIVERSITY OF SOUTH BOHEMIA

text: public

text: Tremblaya princeps from Pseudococcus longispinus mealybugs

text: Candidatus Tremblaya princeps

text: Candidatus Tremblaya princeps

text: Tremblaya princeps PLON


text: UNIVERSITY OF SOUTH BOHEMIA

characteristic: INSDC center name

text: public

text: Tremblaya princeps from Trionymus perrisii mealybugs

text: Candidatus Tremblaya princeps

text: Candidatus Tremblaya princeps

text: Tremblaya princeps TPER


text: UNIVERSITY OF SOUTH BOHEMIA

text: public

text: Tremblaya princeps from Paracoccus marginatus

text: Candidatus Tremblaya princeps

text: Candidatus Tremblaya princeps

text: Tremblaya princeps PMAR


text: UNIVERSITY OF MANCHESTER

text: public

text: Sequence non specifically amplified from environmental sample using cytochrome B mammalian primers. Uncultured sample, direct sequence.

text: Ralstonia pickettii

text: Ralstonia pickettii


text: UNIVERSITY OF MANCHESTER

text: public

text: Sequence non specifically amplified from uncultured environmental sample using mammalian cytochrome B primers.

text: Ralstonia pickettii

text: Ralstonia pickettii


text: UNIVERSITY OF MANCHESTER

text: public

text: Sequence non-specifically amplified from an uncultured environmental sample using mammalian cytochrome B primers.

text: Ralstonia pickettii

text: Ralstonia pickettii


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned sequence from an uncultured environmental sample, sequence non-specifically amplified by fungal RDN primers.

text: unidentified

text: unidentified


text: UNIVERSITY OF MELBOURNE

text: public

tag: Namespace:UNIVERSITY OF MELBOURNE

characteristic: collection date

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host

text: Diseased

characteristic: host health state

text: Skin

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: UNIVERSITY OF MELBOURNE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: New Zealand

text: Human

text: Diseased

text: Skin

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned sequence from uncultured pottery swab sample, Northern Ghana

characteristic: description

text: unidentified

characteristic: organism

text: unidentified

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: Direct sequence, partial RbcL region, from an uncultured pottery swab sample.

text: Musa sp.

text: Musa sp.


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: Direct paired end reads, non specific amplifications of an uncultured pottery swab sample amplified using mammalian cytochrome B primers.

text: Ralstonia pickettii

text: Ralstonia pickettii


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned sequence non specifically amplified from an uncultured pottery swab sample, Northern Ghana

text: unidentified

text: unidentified


text: ANIMAL HEALTH TRUST

text: public

tag: Namespace:ANIMAL HEALTH TRUST

text: dog

characteristic: common name

text: Canine primary open angle glaucoma case genome

text: Canis lupus familiaris

text: Canis lupus familiaris


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial RbcL sequence from an uncultured pottery swab sample, Northern Ghana

text: Triticeae environmental sample

text: Triticeae environmental sample


text: UOM

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: Normal Squamous Oesophageal epithelium

characteristic: cell type

text: human

text: Protocols: OE33 cells were grown in RPMI media supplemented with 10% foetal bovine serum, MFD1 and HET1A cells were grown in DMEM media supplemented with 10% foetal bovine serum. ATAC-seq was performed as published in Buenrostro, J. D., Giresi, P. G., Zaba, L. C., Chang, H. Y., & Greenleaf, W. J. (2013). Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nature Methods, 10(12), 1213-1218. http://doi.org/10.1038/nmeth.2688

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex


text: UOM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Oesophageal Adenocarcinoma

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male


text: UOM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: Oesophageal Adenocarcinoma

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Swedish university of Agriculture Sciences

characteristic: Submitter Id

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Swedish university of Agriculture Sciences

text: public

text: dog

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris


E-MTAB-4215:Sample 1

text: public

text: E-MTAB-4215:Sample 1

tag: Namespace:European Molecular Biology Laboratory (EMBL) & Heidelberg University Molecular Medicine Partnership Unit (MMPU)

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-4215:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: European Molecular Biology Laboratory (EMBL) & Heidelberg University Molecular Medicine Partnership Unit (MMPU)

text: public

text: E-MTAB-4215:Sample 10

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 10


E-MTAB-4215:Sample 11

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-4215:Sample 11

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 11


E-MTAB-4215:Sample 12

text: public

text: E-MTAB-4215:Sample 12

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 12


E-MTAB-4215:Sample 13

text: public

text: E-MTAB-4215:Sample 13

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 13


E-MTAB-4215:Sample 14

text: public

text: E-MTAB-4215:Sample 14

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 14


E-MTAB-4215:Sample 15

text: public

text: E-MTAB-4215:Sample 15

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 15


E-MTAB-4215:Sample 16

text: public

text: E-MTAB-4215:Sample 16

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 16


E-MTAB-4215:Sample 17

text: public

text: E-MTAB-4215:Sample 17

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 17


E-MTAB-4215:Sample 18

text: public

text: E-MTAB-4215:Sample 18

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 18


E-MTAB-4215:Sample 19

text: public

text: E-MTAB-4215:Sample 19

text: ArrayExpress

text: human

text: Protocols: total RNASeq Phenol Chloroform True-Seq Kit

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 19


E-MTAB-4215:Sample 2

text: public

text: E-MTAB-4215:Sample 2

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-4215:Sample 21

text: public

text: E-MTAB-4215:Sample 21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 21


E-MTAB-4215:Sample 23

text: public

text: E-MTAB-4215:Sample 23

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 23


E-MTAB-4215:Sample 3

text: public

text: E-MTAB-4215:Sample 3

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 3


E-MTAB-4215:Sample 4

text: public

text: E-MTAB-4215:Sample 4

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 4


E-MTAB-4215:Sample 5

text: public

text: E-MTAB-4215:Sample 5

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 5


E-MTAB-4215:Sample 6

text: public

text: E-MTAB-4215:Sample 6

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 6


E-MTAB-4215:Sample 7

text: public

text: E-MTAB-4215:Sample 7

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 7


E-MTAB-4215:Sample 8

text: public

text: E-MTAB-4215:Sample 8

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 8


E-MTAB-4215:Sample 9

text: public

text: E-MTAB-4215:Sample 9

text: ArrayExpress

text: human

text: Protocols: IP Phenol Chloroform iCLIP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 9


text: UMR 1014 SECALIM

text: public

tag: Namespace:UMR 1014 SECALIM

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Campylobacter jejuni Bf


text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: human

text: Homo sapiens

text: Pool of CRISPR screen pilot samples

characteristic: sample description

text: Homo sapiens

characteristic: strain