LMI

text: INSTITUT PASTEUR

text: public

text: LMI

text: 1 chromosome

characteristic: description

text: Tatlockia micdadei

characteristic: organism

text: Tatlockia micdadei

text: Legionella micdadei genome

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:European Bioinformatics Institute (EMBL-EBI)

characteristic: Submitter Id

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with E. coli Lipopolysaccharide

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/E. coli Lipopolysaccharide


text: European Bioinformatics Institute (EMBL-EBI)

text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with Lipoteichoic acid

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/Lipoteichoic acid


text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with Polyinosinic:polycytidylic acid

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/Polyinosinic:polycytidylic acid


text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with fMLP

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/fMLP


text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with Heatshock

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/Heatshock


text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with Prostaglandin A1

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/Prostaglandin A1


text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with Prostagalndin E1

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/Prostagalndin E1


text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with 20 Hydroxyecdysome

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/20 Hydroxyecdysome


text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with Insulin

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/Insulin


text: European Bioinformatics Institute (EMBL-EBI)

text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line challenged with Transcription growth factor β1

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/Transcription growth factor β1


text: public

text: RNAseq reads from the Culcoides sonorensis KC cell line control sample

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Culicoides sonorensis KC cell line RNAseq reads/control


text: UB

text: public

text: Enterococcus faecium

text: Enterococcus faecium


text: LIV

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: S aureus resequence


text: UNIBE-IG

text: public

text: domestic cat

characteristic: common name

text: Felis catus

text: Felis catus

text: Next generation sequencing of a white cat confirms an insertion in the Kit gene

type: has member


text: Reads were aligned to the fission yeast genome with the exonerate software (Slater and Birney 2005) and reads matching to multiple locations in the genome were assigned at random to only one of these locations. Reads containing up to 5 mismatches (not clustered at read ends) were kept for further analysis (���Genomic set�۝). The remaining sequencing reads were then mapped against fission yeast spliced exons and filtered as above (���Spliced set�۝). Pools of both sets of reads were used for further analyses. Between 20 and 50 million mappable reads were obtained for each library (~80-85% of total reads were mappable).Relative sequencing expression scores were calculated for annotated features (spliced transcripts and introns), using the genome annotation available in PomBase http://www.pombase.org/. The number of reads mapping to each feature was divided by the length of the feature per kilobase and read depth per million mapped reads (reads per kilobase of transcript per million reads mapped, RPKM). RPKMs for annotated features correlated strongly between biological replicates (Pearson's correlation coefficient >0.98).

characteristic: Data processing step

text: Dbitton

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

text: Cells from all cultures were harvested at mid-log phase (optical density, OD600nm = 0.5) and total RNA was isolated by hot-phenol extraction, and RNA quality was assessed on a Bioanalyzer instrument (Agilent).

characteristic: extract protocol

text: h- upf1::kanMX

characteristic: genotype

text: All RNA processing mutant cell cultures were harvested at mid-log phase (optical density, OD600nm = 0.5). With the exception of conditional mutants (rrp6-ts, dis3-54), all RNA processing mutant cultures were grown at 32�C in rich medium (YES) For meiotic time course samples: briefly, S. pombe pat1-114 cells were grown to mid-log phase before being shifted to Edinburgh minimal media (EMM) without nitrogen. Cells were incubated at 25�C overnight to synchronise them in G1 phase. Meiosis was induced by addition of NH4Cl to final concentration of 0.5g/L and incubation at 34�C. Cells were harvested and RNA extracted hourly after induction of meiosis. A pool of meiotic RNA was created by pooling equal amounts from all time-points (0, 1, 2, 3, 4, 5, 6, 7, 8h). For glucose starvation experiments, wild-type (WT) cells were grown in EMM at 32�C, 2% glucose. A sample representing 100% survival was harvested when cultures reached a stable maximal density. Measurements of Colony Forming Units (CFUs) were conducted every 24 hours after this initial time point, and another sample harvested when cultures reached 50% survival. pka1 samples under glucose starvation were prepared in the same way, with an additional sample taken when cultures reached 87% survival (this is the same time point at which a WT culture run in parallel reached 50% survival). For nitrogen starvation experiments, cells were grown in EMM at 32�C to a stable maximal density. Cells were then washed twice in EMM without nitrogen source (NH4Cl) and cultured in EMM without nitrogen at 32�C. Cells were harvested at 24 hours and 7 days after nitrogen removal.

characteristic: growth protocol

text: Strand-specific RNA-seq libraries were prepared from poly(A)-enriched (poly(A)+) RNA using an unreleased early version of the Illumina TruSeq Small RNA Sample Prep Kit. Briefly, 10mg of total RNA was used as starting material and poly(A)+ RNA was enriched by two rounds of poly(dT) Sera-Mag magnetic bead purification. RNA was fragmented to an average size of ~200 nucleotides (nt). Fragmented RNA was 3�۪ de-phosphorylated with Antarctic phosphatase and 5�۪ phosphorylated with polynucleotide kinase; this treatment prepared RNA fragments for subsequent ligation of Illumina RNA adaptors to their 5�۪ and 3�۪ ends using a 3�۪ RNA ligase and a T4 RNA ligase respectively. First-strand cDNA was produced using a primer specific for the Illumina 3�۪ adaptor. The library was amplified with 15 PCR cycles using primers specific for the Illumina adaptors and purified using SPRI-beads (Agencourt, Beckman Coulter). Library size distributions and concentrations were determined on a Bioanalyser (Agilent).

characteristic: library construction protocol

text: Strand specific RNA-seq. poly(A)-enriched

characteristic: library strategy

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: upf1-deletion - NMD compromised strain.


characteristic: ENA-CHECKLIST

text: Dbitton

text: public

text: fission yeast

text: Cells were grown in YES 32°C, and heat-shocked at 36°C for 2.5 hours

characteristic: description

text: h90 ade6-M216 leu1 rrp6::rrp6.9-GFP kan

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: rrp6-ts - nuclear degradation compromised strain

characteristic: title


Veg. growth_sample_27

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dbitton

characteristic: INSDC center name

text: public

text: Veg. growth_sample_27

text: fission yeast

text: Cells grown in YES 32°C

text: h- 972

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Wild type strain, vegetative growth


text: Dbitton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fission yeast

text: Cultures were grown in YES 32°C

text: h90 ade6-M216 leu1 rrp6::rrp6.9-GFP kan

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: exo2-deletion - exonuclease mutant


characteristic: Data processing step

text: Dbitton

text: public

characteristic: Submitter Id

text: fission yeast

characteristic: common name

text: Cells were grown in EMM 32°C; Harvested as soon as reached stationary phase.

characteristic: extract protocol

text: h- 972

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Wild-type strain at early stationary phase


text: Dbitton

text: public

text: fission yeast

text: Cells were grown in EMM 32°C; Harvested deep in stationary phase when viability dropped to 50% (assesed by CFU).

text: h- 972

characteristic: genotype

characteristic: growth protocol

characteristic: library construction protocol

characteristic: library strategy

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Wild-type strain at deep stationary phase


characteristic: ENA-CHECKLIST

text: Dbitton

text: public

text: fission yeast

text: Cells were grown in YES 30°C; cold-sensitive

characteristic: description

text: h+ leu1 ura4 his2 dis3-54

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: dis3_54-ts - exosome mutant

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dbitton

characteristic: INSDC center name

text: public

text: fission yeast

text: h+ leu1 ura4 his2 dis3-54

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: dis3_54-ts- exosome mutant


text: Dbitton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fission yeast

text: Cultures were grown in YES 32°C

text: h+ leu1 ura4 his2 dis3-54

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: pan2-deletion - poly(A)-specific ribonuclease complex subunit mutant


characteristic: Data processing step

text: Dbitton

text: public

characteristic: Submitter Id

text: fission yeast

characteristic: common name

text: Cultures were grown in YES 32°C

characteristic: extract protocol

text: h- pan2::natMX6 ade6-216

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: Dbitton

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

text: h- pan2::natMX6 ade6-216

characteristic: genotype

characteristic: growth protocol

characteristic: library construction protocol

characteristic: library strategy

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: dcr1-deletion - RNAi mutant


characteristic: ENA-CHECKLIST

text: Dbitton

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

characteristic: description

text: h‐ Δdcr1::kanMX6, otr1R(Sph1)::ura4, ura4- DS/E, ade6‐M210, leu1‐32, his7‐366

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: dcr1-deletion - RNAi mutant

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dbitton

characteristic: INSDC center name

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

text: h‐ Δrdp1::kanMX6, otr1R(Sph1)::ura4, ura4-‐ DS/E, ade6-‐M216, leu1-‐32, his7-‐366

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: rdp1-deletion - RNAi mutant


text: Dbitton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fission yeast

text: Cultures were grown in YES 32°C

text: h- Δago1::kanMX6, otr1R(Sph1)::ura4, ura4-DS/E, ade6-210, leu1-32, his7-366

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: ago1-deletion - RNAi mutant


characteristic: Data processing step

text: Dbitton

text: public

characteristic: Submitter Id

text: fission yeast

characteristic: common name

text: Cultures were grown in YES 32°C

characteristic: extract protocol

text: h- exo2::kanMX6 ade6-216

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: exo2-deletion - exonuclease mutant


text: Dbitton

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

text: h- dis3l2::KanMS6

characteristic: genotype

characteristic: growth protocol

characteristic: library construction protocol

characteristic: library strategy

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: dis3L2-deletion - 3'-5'-exoribonuclease cytoplasmic degradation mutant


text: Reads were aligned to the fission yeast genome with the exonerate software (Slater and Birney 2005) and reads matching to multiple locations in the genome were assigned at random to only one of these locations. Reads containing up to 5 mismatches (not clustered at read ends) were kept for further analysis (���Genomic set�۝). The remaining sequencing reads were then mapped against fission yeast spliced exons and filtered as above (���Spliced set�۝). Pools of both sets of reads were used for further analyses. Between 20 and 50 million mappable reads were obtained for each library (~80-85% of total reads were mappable).Relative sequencing expression scores were calculated for annotated features (spliced transcripts and introns), using the genome annotation available in PomBase http://www.pombase.org/. The number of reads mapping to each feature was divided by the length of the feature per kilobase and read depth per million mapped reads (reads per kilobase of transcript per million reads mapped, RPKM). RPKMs for annotated features correlated strongly between biological replicates (Pearson's correlation coefficient >0.98).

characteristic: ENA-CHECKLIST

text: Dbitton

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

characteristic: description

text: h- lsm1::hph

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: lsm1-deletion - mRNA decapping complex subunit mutant

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dbitton

characteristic: INSDC center name

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

text: Cells from all cultures were harvested at mid-log phase (optical density, OD600nm = 0.5) and total RNA was isolated by hot-phenol extraction, and RNA quality was assessed on a Bioanalyzer instrument (Agilent).

text: h- ski2::hph

text: All RNA processing mutant cell cultures were harvested at mid-log phase (optical density, OD600nm = 0.5). With the exception of conditional mutants (rrp6-ts, dis3-54), all RNA processing mutant cultures were grown at 32�C in rich medium (YES) For meiotic time course samples: briefly, S. pombe pat1-114 cells were grown to mid-log phase before being shifted to Edinburgh minimal media (EMM) without nitrogen. Cells were incubated at 25�C overnight to synchronise them in G1 phase. Meiosis was induced by addition of NH4Cl to final concentration of 0.5g/L and incubation at 34�C. Cells were harvested and RNA extracted hourly after induction of meiosis. A pool of meiotic RNA was created by pooling equal amounts from all time-points (0, 1, 2, 3, 4, 5, 6, 7, 8h). For glucose starvation experiments, wild-type (WT) cells were grown in EMM at 32�C, 2% glucose. A sample representing 100% survival was harvested when cultures reached a stable maximal density. Measurements of Colony Forming Units (CFUs) were conducted every 24 hours after this initial time point, and another sample harvested when cultures reached 50% survival. pka1 samples under glucose starvation were prepared in the same way, with an additional sample taken when cultures reached 87% survival (this is the same time point at which a WT culture run in parallel reached 50% survival). For nitrogen starvation experiments, cells were grown in EMM at 32�C to a stable maximal density. Cells were then washed twice in EMM without nitrogen source (NH4Cl) and cultured in EMM without nitrogen at 32�C. Cells were harvested at 24 hours and 7 days after nitrogen removal.

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: ski2-deletion - Ski complex RNA helicase mutant


text: Dbitton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fission yeast

text: Cultures were grown in YES 32°C

text: h- dis3l2::KanMS6 lsm1::hph

text: Strand-specific RNA-seq libraries were prepared from poly(A)-enriched (poly(A)+) RNA using an unreleased early version of the Illumina TruSeq Small RNA Sample Prep Kit. Briefly, 10mg of total RNA was used as starting material and poly(A)+ RNA was enriched by two rounds of poly(dT) Sera-Mag magnetic bead purification. RNA was fragmented to an average size of ~200 nucleotides (nt). Fragmented RNA was 3�۪ de-phosphorylated with Antarctic phosphatase and 5�۪ phosphorylated with polynucleotide kinase; this treatment prepared RNA fragments for subsequent ligation of Illumina RNA adaptors to their 5�۪ and 3�۪ ends using a 3�۪ RNA ligase and a T4 RNA ligase respectively. First-strand cDNA was produced using a primer specific for the Illumina 3�۪ adaptor. The library was amplified with 15 PCR cycles using primers specific for the Illumina adaptors and purified using SPRI-beads (Agencourt, Beckman Coulter). Library size distributions and concentrations were determined on a Bioanalyser (Agilent).

text: Strand specific RNA-seq. poly(A)-enriched

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: dis3L2_lsm1-deletion - double mutants exonuclease and decapping


characteristic: Data processing step

text: Dbitton

text: public

characteristic: Submitter Id

text: fission yeast

characteristic: common name

text: Cultures were grown in YES 32°C

characteristic: extract protocol

text: h- dis3l2::KanMS6 ski2::hph

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: dis3L2_ski2-deletion - double mutant exonuclease and helicase


text: Dbitton

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

text: h+ ade6-M216 leu1-32 ura4-D18 his3-D1 rrp6::URA4

characteristic: genotype

characteristic: growth protocol

characteristic: library construction protocol

characteristic: library strategy

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: rrp6-deletion - nuclear exosome subunit mutant


characteristic: ENA-CHECKLIST

text: Dbitton

text: public

text: fission yeast

text: EMM-Nitrogen depleted for 14 hours 25°C for synchronisation at G1, then meiosis was induced by adding 0.5g/L Nitrogen and shifting t at 34°C for 0 hours

characteristic: description

text: pat1-114/pat1‐114 ade6‐ M210/ade6‐M216 h+/h+

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: Meiotic timecourse - harvested at time 0, before temperature shit

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dbitton

characteristic: INSDC center name

text: public

text: fission yeast

text: EMM+0.5g/L Nitrogen at 34°C for 2 hours

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Meiotic timecourse - harvested 2 hours following temperature shit


text: Dbitton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fission yeast

text: EMM+0.5g/L Nitrogen at 34°C for 2 hours

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Meiotic timecourse - harvested 4 hours following temperature shit


characteristic: Data processing step

text: Dbitton

text: public

characteristic: Submitter Id

text: fission yeast

characteristic: common name

text: EMM+0.5g/L Nitrogen at 34°C for 2 hours

characteristic: extract protocol

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Meiotic timecourse - harvested 6 hours following temperature shit


text: Reads were aligned to the fission yeast genome with the exonerate software (Slater and Birney 2005) and reads matching to multiple locations in the genome were assigned at random to only one of these locations. Reads containing up to 5 mismatches (not clustered at read ends) were kept for further analysis (���Genomic set�۝). The remaining sequencing reads were then mapped against fission yeast spliced exons and filtered as above (���Spliced set�۝). Pools of both sets of reads were used for further analyses. Between 20 and 50 million mappable reads were obtained for each library (~80-85% of total reads were mappable).Relative sequencing expression scores were calculated for annotated features (spliced transcripts and introns), using the genome annotation available in PomBase http://www.pombase.org/. The number of reads mapping to each feature was divided by the length of the feature per kilobase and read depth per million mapped reads (reads per kilobase of transcript per million reads mapped, RPKM). RPKMs for annotated features correlated strongly between biological replicates (Pearson's correlation coefficient >0.98).

text: Dbitton

text: public

text: fission yeast

text: EMM-Nitrogen depleted for 14 hours 25°C for

characteristic: genotype

characteristic: growth protocol

characteristic: library construction protocol

characteristic: library strategy

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


characteristic: ENA-CHECKLIST

text: Dbitton

text: public

text: fission yeast

text: EMM+0.5g/L Nitrogen at 34°C for 2 hours

characteristic: description

text: Cells from all cultures were harvested at mid-log phase (optical density, OD600nm = 0.5) and total RNA was isolated by hot-phenol extraction, and RNA quality was assessed on a Bioanalyzer instrument (Agilent).

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: Meiotic timecourse - harvested 8 hours following temperature shit

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dbitton

characteristic: INSDC center name

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

text: h+ ade6-M216 leu1-32 ura4-D18 his3D1

text: All RNA processing mutant cell cultures were harvested at mid-log phase (optical density, OD600nm = 0.5). With the exception of conditional mutants (rrp6-ts, dis3-54), all RNA processing mutant cultures were grown at 32�C in rich medium (YES) For meiotic time course samples: briefly, S. pombe pat1-114 cells were grown to mid-log phase before being shifted to Edinburgh minimal media (EMM) without nitrogen. Cells were incubated at 25�C overnight to synchronise them in G1 phase. Meiosis was induced by addition of NH4Cl to final concentration of 0.5g/L and incubation at 34�C. Cells were harvested and RNA extracted hourly after induction of meiosis. A pool of meiotic RNA was created by pooling equal amounts from all time-points (0, 1, 2, 3, 4, 5, 6, 7, 8h). For glucose starvation experiments, wild-type (WT) cells were grown in EMM at 32�C, 2% glucose. A sample representing 100% survival was harvested when cultures reached a stable maximal density. Measurements of Colony Forming Units (CFUs) were conducted every 24 hours after this initial time point, and another sample harvested when cultures reached 50% survival. pka1 samples under glucose starvation were prepared in the same way, with an additional sample taken when cultures reached 87% survival (this is the same time point at which a WT culture run in parallel reached 50% survival). For nitrogen starvation experiments, cells were grown in EMM at 32�C to a stable maximal density. Cells were then washed twice in EMM without nitrogen source (NH4Cl) and cultured in EMM without nitrogen at 32�C. Cells were harvested at 24 hours and 7 days after nitrogen removal.

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Wild-type, vegetative growth


text: Dbitton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fission yeast

text: Cultures were grown in YES 32°C

text: h+ ade6M210 leu1-32 ura4Δ18 his3Δ1 ski7::kanMX6

text: Strand-specific RNA-seq libraries were prepared from poly(A)-enriched (poly(A)+) RNA using an unreleased early version of the Illumina TruSeq Small RNA Sample Prep Kit. Briefly, 10mg of total RNA was used as starting material and poly(A)+ RNA was enriched by two rounds of poly(dT) Sera-Mag magnetic bead purification. RNA was fragmented to an average size of ~200 nucleotides (nt). Fragmented RNA was 3�۪ de-phosphorylated with Antarctic phosphatase and 5�۪ phosphorylated with polynucleotide kinase; this treatment prepared RNA fragments for subsequent ligation of Illumina RNA adaptors to their 5�۪ and 3�۪ ends using a 3�۪ RNA ligase and a T4 RNA ligase respectively. First-strand cDNA was produced using a primer specific for the Illumina 3�۪ adaptor. The library was amplified with 15 PCR cycles using primers specific for the Illumina adaptors and purified using SPRI-beads (Agencourt, Beckman Coulter). Library size distributions and concentrations were determined on a Bioanalyser (Agilent).

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: ski7-deletion-ski complex interacting GTPase mutant


characteristic: Data processing step

text: Dbitton

text: public

characteristic: Submitter Id

text: fission yeast

characteristic: common name

text: Cultures were grown in YES 32°C

characteristic: extract protocol

text: h+ ade6M210 leu1-32 ura4Δ18 his3Δ1 nab2::kanMX6

text: Strand specific RNA-seq. poly(A)-enriched

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: nab2-deletion - poly(A) binding protein mutant


text: Dbitton

text: public

text: fission yeast

text: Cells were grown in EMM 32°C; Harvested as soon as reached

text: h- 972

characteristic: genotype

characteristic: growth protocol

characteristic: library construction protocol

characteristic: library strategy

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Wild-type strain at early stationary phase


characteristic: ENA-CHECKLIST

text: Dbitton

text: public

text: fission yeast

text: Cells were grown in EMM 32°C; Harvested deep in stationary phase when viability dropped to 50% (assesed by CFU).

characteristic: description

text: h- 972

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: Wild-type strain at deep stationary phase

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dbitton

characteristic: INSDC center name

text: public

text: fission yeast

text: Cells were grown in EMM 32°C; Shifted to minus nitrogen media for 7 days

text: h- 972

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Nitrogen starvation 7 days


text: Dbitton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fission yeast

text: Cultures were grown in YES 32°C

text: h- ade6-M210 leu1-32 ura4-D18 his3-D1 cid14::URA4

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: cid14-deletion - poly(A) polymerase TRAMP mutant


text: Reads were aligned to the fission yeast genome with the exonerate software (Slater and Birney 2005) and reads matching to multiple locations in the genome were assigned at random to only one of these locations. Reads containing up to 5 mismatches (not clustered at read ends) were kept for further analysis (���Genomic set�۝). The remaining sequencing reads were then mapped against fission yeast spliced exons and filtered as above (���Spliced set�۝). Pools of both sets of reads were used for further analyses. Between 20 and 50 million mappable reads were obtained for each library (~80-85% of total reads were mappable).Relative sequencing expression scores were calculated for annotated features (spliced transcripts and introns), using the genome annotation available in PomBase http://www.pombase.org/. The number of reads mapping to each feature was divided by the length of the feature per kilobase and read depth per million mapped reads (reads per kilobase of transcript per million reads mapped, RPKM). RPKMs for annotated features correlated strongly between biological replicates (Pearson's correlation coefficient >0.98).

characteristic: Data processing step

text: Dbitton

text: public

characteristic: Submitter Id

text: fission yeast

characteristic: common name

text: Cells were grown in EMM 32°C; Harvested as soon as reached stationary phase

characteristic: extract protocol

text: h- pka1::KanMX4

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: pka1 -deletion-cAMP-dependent protein kinase catalytic subunit mutant at early stationary phase


text: Dbitton

text: public

text: fission yeast

text: Cells were grown in EMM 32°C; Harvested deep in stationary phase when viability dropped to 87% (assesed by CFU)

text: Cells from all cultures were harvested at mid-log phase (optical density, OD600nm = 0.5) and total RNA was isolated by hot-phenol extraction, and RNA quality was assessed on a Bioanalyzer instrument (Agilent).

text: h- pka1::KanMX4

characteristic: genotype

text: All RNA processing mutant cell cultures were harvested at mid-log phase (optical density, OD600nm = 0.5). With the exception of conditional mutants (rrp6-ts, dis3-54), all RNA processing mutant cultures were grown at 32�C in rich medium (YES) For meiotic time course samples: briefly, S. pombe pat1-114 cells were grown to mid-log phase before being shifted to Edinburgh minimal media (EMM) without nitrogen. Cells were incubated at 25�C overnight to synchronise them in G1 phase. Meiosis was induced by addition of NH4Cl to final concentration of 0.5g/L and incubation at 34�C. Cells were harvested and RNA extracted hourly after induction of meiosis. A pool of meiotic RNA was created by pooling equal amounts from all time-points (0, 1, 2, 3, 4, 5, 6, 7, 8h). For glucose starvation experiments, wild-type (WT) cells were grown in EMM at 32�C, 2% glucose. A sample representing 100% survival was harvested when cultures reached a stable maximal density. Measurements of Colony Forming Units (CFUs) were conducted every 24 hours after this initial time point, and another sample harvested when cultures reached 50% survival. pka1 samples under glucose starvation were prepared in the same way, with an additional sample taken when cultures reached 87% survival (this is the same time point at which a WT culture run in parallel reached 50% survival). For nitrogen starvation experiments, cells were grown in EMM at 32�C to a stable maximal density. Cells were then washed twice in EMM without nitrogen source (NH4Cl) and cultured in EMM without nitrogen at 32�C. Cells were harvested at 24 hours and 7 days after nitrogen removal.

characteristic: growth protocol

characteristic: library construction protocol

characteristic: library strategy

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: pka1 -deletion-cAMP-dependent protein kinase catalytic subunit mutant at early-mid stationary phase


characteristic: ENA-CHECKLIST

text: Dbitton

text: public

text: fission yeast

text: Cells were grown in EMM 32°C; Harvested deep in stationary phase when viability dropped to 50% (assesed by CFU)

characteristic: description

text: h- pka1::KanMX4

text: Strand-specific RNA-seq libraries were prepared from poly(A)-enriched (poly(A)+) RNA using an unreleased early version of the Illumina TruSeq Small RNA Sample Prep Kit. Briefly, 10mg of total RNA was used as starting material and poly(A)+ RNA was enriched by two rounds of poly(dT) Sera-Mag magnetic bead purification. RNA was fragmented to an average size of ~200 nucleotides (nt). Fragmented RNA was 3�۪ de-phosphorylated with Antarctic phosphatase and 5�۪ phosphorylated with polynucleotide kinase; this treatment prepared RNA fragments for subsequent ligation of Illumina RNA adaptors to their 5�۪ and 3�۪ ends using a 3�۪ RNA ligase and a T4 RNA ligase respectively. First-strand cDNA was produced using a primer specific for the Illumina 3�۪ adaptor. The library was amplified with 15 PCR cycles using primers specific for the Illumina adaptors and purified using SPRI-beads (Agencourt, Beckman Coulter). Library size distributions and concentrations were determined on a Bioanalyser (Agilent).

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: pka1 -deletion-cAMP-dependent protein kinase catalytic subunit mutant at deep stationary phase

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dbitton

characteristic: INSDC center name

text: public

text: fission yeast

text: Cultures were grown in YES 32°C

text: h- rrp6::URA4 dcr1::natMX6 ura4-D18

text: Strand specific RNA-seq. poly(A)-enriched

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: rrp6-deletion/dcr1-deletion - double mutant RNAi and exosome


text: Dbitton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fission yeast

text: Cultures were grown in YES 32°C

text: h+ exo2::kanMX6 dcr1::URA4 ura4-D18

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: exo2-deletion/dcr1-deletion - double mutant exonuclease and RNAi


text: BRISTOL

text: public

characteristic: Submitter Id

text: domestic guinea pig

characteristic: common name

text: Cavia porcellus

text: Cavia porcellus

text: Guinea pig spleeen


text: GMGM

text: public

text: Pseudomonas xanthomarina S11 complete genome assembled with ABySS from HiSeq2000 paired-end and mate-pair reads.

text: Pseudomonas xanthomarina

text: Pseudomonas xanthomarina

characteristic: strain


text: public

text: Mycobacterium bovis

text: Mycobacterium bovis

text: Mycobacterium bovis MB1 genome sequence


text: public

text: Mycobacterium caprae

text: Mycobacterium caprae

text: Characterization of Mycobacterium caprae MB2 genome sequence


text: public

text: Mycobacterium bovis

text: Mycobacterium bovis

text: Characterization of Mycobacterium bovis MB3 genome sequence


text: public

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

characteristic: collection date

text: Raw 454-pyrosequencing data of bacterial 16S rRNA gene amplicons obtained from three mesophilic full-scale biogas reactors fed with energy crops.

text: Germany

characteristic: geographic location (country and/or sea)

text: fermenter content of full-scale biogas reactors

characteristic: isolation source

text: uncultured bacterium

text: uncultured bacterium

text: Bacterial community composition within a mesophilic full-scale biogas reactor


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

text: public

characteristic: description

text: Germany

text: uncultured bacterium

text: uncultured bacterium


text: HKI JENA

text: public

tag: Namespace:HKI JENA

text: WGS of Verticillium hemipterigenum (syn Torrubiella hemipterigena) DNA extracted from mycel grown in Czapek-Dox for 48h. From the biological sample 3 libraries were created. One 5kb mate paire libray, one 8kb mate paird library and one standard Illumina paired-end library.

text: Torrubiella hemipterigena

characteristic: organism

text: Torrubiella hemipterigena

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Characterization of Mycobacterium bovis MB4 genome sequence

text: Mycobacterium bovis

text: Mycobacterium bovis


characteristic: External Id

text: UB

characteristic: INSDC center name

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: missing

text: No

text: United Kingdom

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

characteristic: isolation source host-associated

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: missing

characteristic: serovar


Primula Slocus BAC 17A21

characteristic: ENA-CHECKLIST

text: TGAC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Primula Slocus BAC 17A21

characteristic: Submitter Id

text: TGAC

characteristic: broker name

text: Primula Slocus BAC 17A21

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 17A21


Primula Slocus BAC 20E12

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TGAC

characteristic: INSDC center name

text: public

text: Primula Slocus BAC 20E12

text: TGAC

text: Primula Slocus BAC 20E12

characteristic: description

text: Primula vulgaris

characteristic: organism

text: Primula vulgaris

text: Primula Slocus BAC 20E12

characteristic: title


Primula Slocus BAC 28D21

text: TGAC

text: public

text: Primula Slocus BAC 28D21

text: TGAC

text: Primula Slocus BAC 28D21

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 28D21


Primula Slocus BAC 71C24

text: TGAC

text: public

text: Primula Slocus BAC 71C24

text: TGAC

text: Primula Slocus BAC 71C24

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 71C24


text: public

text: Draft Genome of the Pseudomonas aeruginosa strain Pae221_ST274

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: strain


Primula Slocus BAC 2808

text: public

text: Primula Slocus BAC 2808

tag: Namespace:Centre for Genomic Research University of Liverpool

text: TGAC

text: Primula Slocus BAC 2808

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 2808


Primula Slocus BAC 30C12

text: Centre for Genomic Research University of Liverpool

text: public

text: Primula Slocus BAC 30C12

text: TGAC

text: Primula Slocus BAC 30C12

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 30C12


Primula Slocus BAC 3202

text: public

text: Primula Slocus BAC 3202

text: TGAC

text: Primula Slocus BAC 3202

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 3202


Primula Slocus BAC 46P3

text: public

text: Primula Slocus BAC 46P3

text: TGAC

text: Primula Slocus BAC 46P3

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 46P3


Primula Slocus BAC 81B15

text: public

text: Primula Slocus BAC 81B15

text: TGAC

text: Primula Slocus BAC 81B15

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 81B15


Primula Slocus BAC 90B2

text: public

text: Primula Slocus BAC 90B2

text: TGAC

text: Primula Slocus BAC 90B2

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 90B2


Primula Slocus BAC 9B24

text: public

text: Primula Slocus BAC 9B24

text: TGAC

text: Primula Slocus BAC 9B24

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC 9B24


Primula Slocus BAC pool13

text: public

text: Primula Slocus BAC pool13

text: TGAC

text: Primula Slocus BAC pool13

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC pool13


Primula Slocus BAC pool24

text: public

text: Primula Slocus BAC pool24

text: TGAC

text: Primula Slocus BAC pool24

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC pool24


EHR

text: public

text: EHR

text: Characterization of Ehrlichia mineirensis genome sequence: insights into Ehrlichia evolution.

text: Ehrlichia mineirensis

text: Ehrlichia mineirensis

text: UFMG-EV


workshopseq

text: AAU, India

text: public

text: workshopseq

tag: Namespace:AAU, India

text: shortcourse

text: Bos indicus

text: Bos indicus

text: metagenomic


text: UNIVERSITY OF AMSTERDAM

text: public

tag: Namespace:UNIVERSITY OF AMSTERDAM

text: zebrafish

characteristic: common name

text: Adult

text: Danio rerio

text: Danio rerio

text: Male

characteristic: sex

text: ABxTL

text: Male ZF


Egg

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF AMSTERDAM

text: public

text: Egg

characteristic: collection date

text: zebrafish

text: Oocytes

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

characteristic: environmental package

characteristic: geographic location (altitude)

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: Danio rerio

characteristic: project name

text: Danio rerio

characteristic: sequencing method

text: Zebrafish Egg samples


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF AMSTERDAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Adult

text: Danio rerio

characteristic: organism

text: Danio rerio

text: Male

text: ABxTL

text: Male vs Female

characteristic: title


Male 011

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF AMSTERDAM

text: public

text: Male 011

text: zebrafish

characteristic: common name

text: Adult

text: Danio rerio

text: Danio rerio

text: Male

characteristic: sex

text: ABxTL

characteristic: strain

text: Male vs Female


Male 014

text: UNIVERSITY OF AMSTERDAM

text: public

text: Male 014

text: zebrafish

text: Adult

text: Danio rerio

text: Danio rerio

text: Male

text: ABxTL

text: Male vs Female


Female 007

text: UNIVERSITY OF AMSTERDAM

text: public

text: Female 007

text: zebrafish

text: Adult

text: Danio rerio

text: Danio rerio

text: Female

text: ABxTL

text: Male vs Female


Female 008

text: UNIVERSITY OF AMSTERDAM

text: public

text: Female 008

text: zebrafish

text: Adult

text: Danio rerio

text: Danio rerio

text: Female

text: ABxTL

text: Male vs Female


Female 014

text: UNIVERSITY OF AMSTERDAM

text: public

text: Female 014

text: zebrafish

text: Adult

text: Danio rerio

text: Danio rerio

text: Female

text: ABxTL

text: Male vs Female


Female 016

text: UNIVERSITY OF AMSTERDAM

text: public

text: Female 016

text: zebrafish

text: Adult

text: Danio rerio

text: Danio rerio

text: Female

text: ABxTL

text: Male vs Female


Methanobrevibacter smithii

text: URMITE

text: public

text: Methanobrevibacter smithii

text: Methanobrevibacter smithii

text: Methanobrevibacter smithii

text: Methanobrevibacter smithii genome


text: IVRI - India

text: public

tag: Namespace:IVRI - India

text: Rumen Microbiome

characteristic: description

text: Bos indicus

text: Bos indicus

text: Metatranscriptomics


text: HKI JENA

text: public

text: Rhizopus microsporus strain CBS 344.29 has been sequenced using multiple DNA sequencing protocols and technology. The challenges for genome assembly and sequencing arises from its low G+C content. The mycelia of this biological sample was cultured in semi-liquid VK medium from standing cultures for 3 days at 30°C and has been extracted with the classical CTAB DNA isolation method (Doyle & Doyle, 1987).

text: Rhizopus microsporus

text: Rhizopus microsporus

text: WGS of Rhizopus microsporus CBS 344.29


text: HKI JENA

text: public

text: Rhizopus microsporus strain CBS 344.29 has been sequenced using multiple DNA sequencing protocols and technology. The challenges for genome assembly and sequencing arises from its low G+C content. The mycelia of this biological sample was cultured in solid potato dextrose agar (PDA) plates for 3 days at 30°C, and DNA was extracted with MasterPure™ Yeast DNA Purification Kit (Epicentre, Madison, Wisconsin, USA) following the manufacturer’s instruction.

text: Rhizopus microsporus

text: Rhizopus microsporus

text: WGS of Rhizopus microsporus CBS 344.29


text: HKI JENA

text: public

text: Rhizopus microsporus strain ATCC 62417 has been sequenced using multiple DNA sequencing protocols and technology. The challenges for genome assembly and sequencing arises from its low G+C content. The mycelia of this biological sample was cultured in semi-liquid VK medium from standing cultures for 3 days at 30°C and has been extracted with the classical CTAB DNA isolation method (Doyle & Doyle, 1987).

text: Rhizopus microsporus

text: Rhizopus microsporus

text: WGS of Rhizopus microsporus ATCC 62417


text: HKI JENA

text: public

text: Rhizopus microsporus strain ATCC 62417 has been sequenced using multiple DNA sequencing protocols and technology. The challenges for genome assembly and sequencing arises from its low G+C content. The mycelia of this biological sample was cultured in solid potato dextrose agar (PDA) plates for 3 days at 30°C, and DNA was extracted with MasterPure™ Yeast DNA Purification Kit (Epicentre, Madison, Wisconsin, USA) following the manufacturer’s instruction.

text: Rhizopus microsporus

text: Rhizopus microsporus

text: WGS of Rhizopus microsporus ATCC 62417


text: URMITE

text: public

text: Bacillus_simplex draft genome

text: Bacillus simplex

text: Bacillus simplex

text: Bacillus simplex


text: public

text: Caenorhabditis elegans

text: Caenorhabditis elegans


BOE

text: CENTRE FOR GEOGENETICS

text: public

text: BOE

tag: Namespace:CENTRE FOR GEOGENETICS

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

characteristic: environmental package

characteristic: geographic location (altitude)

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: Equus burchellii boehmi

characteristic: project name

text: Equus burchellii boehmi

characteristic: sequencing method

text: BOE


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Centre for Molecular and Biomolecular Informatics (Radboudumc Nijmegen)

characteristic: Submitter Id

characteristic: age (days)

text: house mouse

text: wild-type

text: WT

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Feces

characteristic: sample site

text: Mus musculus

text: F

text: BALB/c

characteristic: title


text: Centre for Molecular and Biomolecular Informatics (Radboudumc Nijmegen)

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: wild-type

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

characteristic: environmental package

text: WT

characteristic: geographic location (altitude)

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Feces

text: Mus musculus

text: F

characteristic: sex

text: BALB/c

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age (days)

text: house mouse

text: wild-type

text: WT

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Feces

characteristic: sample site

text: Mus musculus

characteristic: sequencing method

text: M

text: BALB/c


text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: IL-1Ra knockout

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

characteristic: environmental package

characteristic: geographic location (altitude)

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Feces

text: Mus musculus

text: F

characteristic: sex

text: BALB/c

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age (days)

text: house mouse

text: IL-1Ra knockout

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Feces

characteristic: sample site

text: Mus musculus

text: M

text: BALB/c

characteristic: strain


text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: IL-1Ra and TLR2 double knockout

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

characteristic: environmental package

characteristic: geographic location (altitude)

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Feces

text: Mus musculus

characteristic: sequencing method

text: M

characteristic: sex

text: BALB/c


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age (days)

text: house mouse

text: IL-1Ra and TLR2 double knockout

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Feces

characteristic: sample site

text: Mus musculus

text: F

text: BALB/c

characteristic: title


text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: IL-1Ra and TLR4 double knockout

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

characteristic: environmental package

characteristic: geographic location (altitude)

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Feces

text: Mus musculus

characteristic: sequencing method

text: M

text: BALB/c

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age (days)

text: house mouse

text: IL-1Ra and TLR4 double knockout

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Feces

characteristic: sample site

text: Mus musculus

text: F

characteristic: sex

text: BALB/c


HAR

text: CENTRE FOR GEOGENETICS

text: public

text: HAR

text: Hartmann’s moun- tain zebra

characteristic: description

text: Equus zebra hartmannae

text: Equus zebra hartmannae

text: HAR

characteristic: title


KIA

characteristic: ENA-CHECKLIST

text: CENTRE FOR GEOGENETICS

text: public

text: KIA

text: kiang

characteristic: common name

text: KIA

text: Equus kiang

text: Equus kiang

text: KIA


ONA

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CENTRE FOR GEOGENETICS

text: public

text: ONA

text: onager

text: ONA

text: Equus hemionus

text: Equus hemionus

text: ONA


SOM

characteristic: External Id

text: CENTRE FOR GEOGENETICS

characteristic: INSDC center name

text: public

text: SOM

text: SOM

text: Equus asinus somalicus

text: Equus asinus somalicus

text: SOM


text: TGAC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: TGAC

characteristic: broker name

text: S-locus sequences generated by assembling BAC reads and BAC pool reads, then merging and removing redundant sequences (see manuscript for further details)

text: Primula vulgaris

text: Primula vulgaris

text: Primula Slocus BAC assembly


text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: Submitter Id

text: Isolate prepared with Illumina TruSeq Nano library prep kit

text: VNI

characteristic: lineage

text: Cryptococcus neoformans var. grubii

text: Cryptococcus neoformans var. grubii


text: IMPERIAL COLLEGE LONDON

text: public

text: VNII

text: Cryptococcus neoformans var. grubii

characteristic: organism

text: Cryptococcus neoformans var. grubii


text: IMPERIAL COLLEGE LONDON

text: public

text: Isolate prepared with New England Biolabs NEBNext Ultra library prep kit

text: VNI

text: Cryptococcus neoformans var. grubii

text: Cryptococcus neoformans var. grubii


text: IMPERIAL COLLEGE LONDON

text: public

text: VNII

text: Cryptococcus neoformans var. grubii

text: Cryptococcus neoformans var. grubii


text: IMPERIAL COLLEGE LONDON

text: public

text: Isolate prepared with the now discontinued Illumina TruSeq DNA v2 library prep kit

text: VNII

text: Cryptococcus neoformans var. grubii

text: Cryptococcus neoformans var. grubii


text: LICAP

text: public

text: human

text: Normal Mucosa

text: Homo sapiens

text: Homo sapiens

text: HNSCC RNAseq


text: LICAP

text: public

text: human

text: Dysplasia

text: Homo sapiens

text: Homo sapiens

text: HNSCC RNAseq


text: LICAP

text: public

text: human

text: Tumour (squamous cell carcinoma)

text: Homo sapiens

text: Homo sapiens

text: HNSCC RNAseq


text: UFPA

text: public

text: human

text: Investigation of Gastric adenocarcinoma patients CDH1 germline mutations

text: Brazil

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

text: Blood

text: Gastric adenocarcinoma patients


text: Instituto de Bioquimica

text: public

tag: Namespace:Instituto de Bioquimica

text: metagenome

text: metagenome


text: MPI FOR MOLECULAR GENETICS

text: public

tag: Namespace:MPI FOR MOLECULAR GENETICS

characteristic: anonymized name

text: human

text: Homo sapiens

text: Homo sapiens

text: CEU human genome


text: WARWICK UNIVERSITY

text: public

tag: Namespace:WARWICK UNIVERSITY

text: Body 4 - Chest extraction A - multiplexed MiSeq run

characteristic: description

text: metagenome

text: metagenome

text: Body 4 - Chest extraction A

characteristic: title


characteristic: ENA-CHECKLIST

text: WARWICK UNIVERSITY

text: public

text: Body 6 - Lung extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 6 - Lung extraction A


characteristic: ENA-FIRST-PUBLIC

text: WARWICK UNIVERSITY

text: public

text: Body 15 - Right lung/pleura extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome


characteristic: ENA-LAST-UPDATE

text: WARWICK UNIVERSITY

text: public

text: Body 17 - Lung extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 17 - Lung extraction A


characteristic: External Id

text: WARWICK UNIVERSITY

text: public

text: Body 23 - Abdomen extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 23 - Abdomen extraction A


text: WARWICK UNIVERSITY

characteristic: INSDC center name

text: public

text: Body 23 - Abdomen extraction A - HiSeq run

text: metagenome

text: metagenome

text: Body 23 - Abdomen extraction A


text: WARWICK UNIVERSITY

characteristic: INSDC first public

text: public

text: Body 24 - Abdomen extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 24 - Abdomen extraction A


text: WARWICK UNIVERSITY

characteristic: INSDC last update

text: public

text: Body 24 - Abdomen extraction A - HiSeq run

text: metagenome

text: metagenome

text: Body 24 - Abdomen extraction A


text: WARWICK UNIVERSITY

text: public

text: Bpsy 25 - Abdomen extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Bpsy 25 - Abdomen extraction A


text: WARWICK UNIVERSITY

text: public

text: Body 25 - Abdomen extraction A - HiSeq run

text: metagenome

text: metagenome

text: Body 25 - Abdomen extraction A


text: WARWICK UNIVERSITY

text: public

text: Body 26 - Pelvic contents extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 26 - Pelvic contents extraction A


text: WARWICK UNIVERSITY

text: public

text: Body 28 - Abdomen extraction A - individual MiSeq run

text: metagenome

text: metagenome

text: Body 28 - Abdomen extraction A


text: WARWICK UNIVERSITY

text: public

text: Body 28 - Abdomen extraction B - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 28 - Abdomen extraction B


text: WARWICK UNIVERSITY

text: public

text: Body 28- Abdomen extraction B - Hiseq run

text: metagenome

text: metagenome

text: Body 28- Abdomen extraction B


text: WARWICK UNIVERSITY

text: public

text: Body 29 - Chest extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 29 - Chest extraction A


text: WARWICK UNIVERSITY

text: public

text: Body 29 - Chest extraction B - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 29 - Chest extraction B


text: WARWICK UNIVERSITY

text: public

text: Body 32 - Abdomen extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 32 - Abdomen extraction A


text: WARWICK UNIVERSITY

text: public

text: Body 32 - Right chest extraction B - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 32 - Right chest extraction B


text: WARWICK UNIVERSITY

text: public

text: Body 33 - Stomach/intestine extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome


text: WARWICK UNIVERSITY

text: public

text: Body 37 - Posterior abdominal wall extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome


text: WARWICK UNIVERSITY

text: public

text: Body 39 - Pelvis extraction A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 39 - Pelvis extraction A


text: WARWICK UNIVERSITY

text: public

text: Body 39 - Pleura extraction B - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 39 - Pleura extraction B


text: WARWICK UNIVERSITY

text: public

text: Body 41- Chest extract A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 41- Chest extract A


text: WARWICK UNIVERSITY

text: public

text: Body 41- Chest extract A - HiSeq run

text: metagenome

text: metagenome

text: Body 41- Chest extract A


text: WARWICK UNIVERSITY

text: public

text: Body 41- Chest extract B - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 41- Chest extract B


text: WARWICK UNIVERSITY

text: public

text: Body 44 - Abdomen extract A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 44 - Abdomen extract A


text: WARWICK UNIVERSITY

text: public

text: Body 48 - Chest tissue on rib extract A- multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 48 - Chest tissue on rib extract A


text: WARWICK UNIVERSITY

text: public

text: Body 50 - Abdomen extract A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 50 - Abdomen extract A


text: WARWICK UNIVERSITY

text: public

text: Body 54 - Abdomen extract A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 54 - Abdomen extract A


text: WARWICK UNIVERSITY

text: public

text: Body 54 - Abdomen extract B - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 54 - Abdomen extract B


text: WARWICK UNIVERSITY

text: public

text: Body 68 - Left lung extract A - individual MiSeq run

text: metagenome

text: metagenome

text: Body 68 - Left lung extract A


text: WARWICK UNIVERSITY

text: public

text: Body 68 - Left lung extract B - individual MiSeq run

text: metagenome

text: metagenome

text: Body 68 - Left lung extract B


text: WARWICK UNIVERSITY

text: public

text: Body 68 - Left lung extract C - individual MiSeq run

text: metagenome

text: metagenome

text: Body 68 - Left lung extract C


text: WARWICK UNIVERSITY

text: public

text: Body 78 - Lower rib extract A - individual MiSeq run

text: metagenome

text: metagenome

text: Body 78 - Lower rib extract A


text: WARWICK UNIVERSITY

text: public

text: Body 80 - Chest extract A - individual MiSeq run

text: metagenome

text: metagenome

text: Body 80 - Chest extract A


text: WARWICK UNIVERSITY

text: public

text: Body 92 - Left chest extract A - individual MiSeq run

text: metagenome

text: metagenome

text: Body 92 - Left chest extract A


text: WARWICK UNIVERSITY

text: public

text: Body 116 - Pleura extract A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 116 - Pleura extract A


text: WARWICK UNIVERSITY

text: public

text: Body 116 - Pleura extract A - HiSeq run

text: metagenome

text: metagenome

text: Body 116 - Pleura extract A


text: WARWICK UNIVERSITY

text: public

text: Body 120- Abdomen extract A - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 120- Abdomen extract A


text: WARWICK UNIVERSITY

text: public

text: Body 121 - Rib extract A - individual MiSeq run

text: metagenome

text: metagenome

text: Body 121 - Rib extract A


text: WARWICK UNIVERSITY

text: public

text: Body 121 - Rib extract B - multiplexed MiSeq run

text: metagenome

text: metagenome

text: Body 121 - Rib extract B


text: WARWICK UNIVERSITY

text: public

text: Body 121 - Rib extract B - HiSeq run

text: metagenome

text: metagenome

text: Body 121 - Rib extract B


Csm

text: WAGENINGEN UNIVERSITY

text: public

text: Csm

tag: Namespace:WAGENINGEN UNIVERSITY

text: Thermus thermophilus

text: Thermus thermophilus

text: Csm complex rna isolation


CmrUninfected

text: WAGENINGEN UNIVERSITY

text: public

text: CmrUninfected

text: Thermus thermophilus

text: Thermus thermophilus

text: CmrUninfected


CmrInfected

text: WAGENINGEN UNIVERSITY

text: public

text: CmrInfected

text: Thermus thermophilus

text: Thermus thermophilus

text: Cmr Infected


text: public

tag: Namespace:iBET - Instituto de Biologia Experimental e Tecnologica

text: 5 year

characteristic: age

text: 2 weeks

characteristic: bending time

text: ArrayExpress

characteristic: broker name

text: Protocols: Differentiating xylem (DX) tissues were harvested after detaching the bark, by quickly scratching the exposed soft gelatinous cell layers (2-3 mm thick) using a clean scalpel blade. The tissues were collected into sterile flasks previously cooled with liquid nitrogen, transported on dry ice avoiding defreeze and stored at -80C until use. Reaction wood (RW) formation was induced by bending vertical E. globulus trees to an angle of roughly 45degrees, during different five bending times, at Altri Florestal SAs Experimental Research Station of Quinta do Furadouro-obidos (Portugal). Samples were collected in three certified trees (ramets) of three certified genotypes (GB3, GM2-58 and MB43 genotypes) provided by Altri Florestal SA (Portugal). Five years old trees were bent in June 9th 2010 (4 weeks of bending), June 16th 2010 (3 weeks of bending), June 23rd 2010 (2 weeks of bending), June 30th 2010 (1 week of bending), and July 6th 2010 (1 day of bending), and harvested along with the non-bent trees in July 7th 2010. DX tissues were collected from the upper (tension wood, TW) and the lower (opposite wood, OW) side of the bent trunk segment. Control DX samples (Ctrl) were harvested at the diameter at breast height (around 1.3 m high) from non-bent trees. Total RNA was isolated using approximately 100mg of biological material per sample. A modified protocol after [][V1] was used by omitting the LiCl precipitation and by precipitating the RNA for one hour at -20C following the addition of 0.1X (v/v) NaOAc 4M (pH 5.2) and 2.5X (v/v) of absolute ethanol. RNA integrity was visualized on 2% agarose 0,5X TBE gels. For the construction of small RNA (smRNA) libraries equimolar pools of total RNA were produced from high quality individual total RNA samples from the SW2008 and RW2010 campaigns following a strategy adjusted to the correspondent model of study. Fifteen micrograms of each total RNA pool was sent to FASTERIS SA (Geneve, CH; www.fasteris.com) for smRNA libraries preparation and sequencing. For library preparation, RNA was processed in vitro to generate a library of short inserts (DNA 22 Colonies Template Library). The quality of these libraries, was checked by cloning an aliquot of the library into a vector, and sequences the inserts by Sanger technology.

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

characteristic: organism part

characteristic: sampling date

text: Eucalyptus globulus

text: opposite wood

characteristic: wood type


text: iBET - Instituto de Biologia Experimental e Tecnologica

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 4 year

text: ArrayExpress

text: Protocols: Differentiating xylem (DX) tissues were harvested after detaching the bark, by quickly scratching the exposed soft gelatinous cell layers (2-3 mm thick) using a clean scalpel blade. The tissues were collected into sterile flasks previously cooled with liquid nitrogen, transported on dry ice avoiding defreeze and stored at -80C until use. The sampling campaign of E. globulus seasonal wood DX-tissues was done in collaboration with RAIZ Institute (Portugal). Four sampling time points were performed during the year of 2008: February 26 th (Feb), May 23rd (May), September 5th (Sep) and December 3rd (Dec). A population of thirty six trees, four years old, from three non-related distinct genotypes (HD161, CN5 and G-70) was selected at Herdade do Zambujal, Pegoes (Portugal). Single samples of DX-tissues were harvested from three ramets of each genotype in each time point. All ramets were previously certified in terms of clonal identity using a battery of seventeen microsatellites. Total RNA was isolated using approximately 100mg of biological material per sample. A modified protocol after [][V1] was used by omitting the LiCl precipitation and by precipitating the RNA for one hour at -20C following the addition of 0.1X (v/v) NaOAc 4M (pH 5.2) and 2.5X (v/v) of absolute ethanol. RNA integrity was visualized on 2% agarose 0,5X TBE gels. For the construction of small RNA (smRNA) libraries equimolar pools of total RNA were produced from high quality individual total RNA samples from the SW2008 and RW2010 campaigns following a strategy adjusted to the correspondent model of study. Fifteen micrograms of each total RNA pool was sent to FASTERIS SA (Geneve, CH; www.fasteris.com) for smRNA libraries preparation and sequencing. For library preparation, RNA was processed in vitro to generate a library of short inserts (DNA 22 Colonies Template Library). The quality of these libraries, was checked by cloning an aliquot of the library into a vector, and sequences the inserts by Sanger technology.

text: Eucalyptus globulus

characteristic: organism

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: S-Set

text: not bent


characteristic: ENA-CHECKLIST

text: public

text: 4 year

text: ArrayExpress

characteristic: description

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: S-Dez

characteristic: title

text: not bent


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 5 year

text: 4 weeks

text: ArrayExpress

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: tension wood


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 5 year

text: Pooled material from one day and one week

text: ArrayExpress

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: tension wood


text: public

text: 5 year

characteristic: age

characteristic: bending time

text: ArrayExpress

characteristic: broker name

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: opposite wood


text: public

text: 4 year

text: ArrayExpress

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

characteristic: organism part

characteristic: sampling date

text: Eucalyptus globulus

text: S-Mai

text: not bent

characteristic: wood type


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 5 year

text: 3 weeks

text: ArrayExpress

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: opposite


characteristic: ENA-CHECKLIST

text: public

text: 5 year

text: 4 weeks

text: ArrayExpress

characteristic: description

text: Eucalyptus globulus

characteristic: organism

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: opposite


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: 5 year

text: 1 week

text: ArrayExpress

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

characteristic: title

text: tension wood


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5 year

text: 1 week

text: ArrayExpress

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: opposite wood


characteristic: INSDC last update

text: public

text: 5 year

characteristic: age

text: 3 weeks

characteristic: bending time

text: ArrayExpress

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: tension wood


text: public

text: 5 year

text: ArrayExpress

characteristic: broker name

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

characteristic: organism part

characteristic: sampling date

text: Eucalyptus globulus

text: Sctrl

text: not bent


text: public

characteristic: INSDC status

characteristic: SRA accession

text: 4 year

text: ArrayExpress

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: S-Fev

text: not bent

characteristic: wood type


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: 5 year

text: 2 weeks

text: ArrayExpress

characteristic: description

text: Eucalyptus globulus

text: Eucalyptus globulus

text: developing xylem

text: Eucalyptus globulus

text: tension wood


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:MRC LABORATORY OF MOLECULAR BIOLOGY, CAMBRIDGE

characteristic: clone

text: baker's yeast

characteristic: common name

text: AID*

characteristic: mutator

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae


tag: attribute

characteristic: External Id

text: MRC LABORATORY OF MOLECULAR BIOLOGY, CAMBRIDGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: baker's yeast

text: AID*

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: title


text: public

characteristic: INSDC status

text: baker's yeast

text: EMS

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

characteristic: SRA accession

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: GOTHENBURG UNIVERISITY

text: public

tag: Namespace:GOTHENBURG UNIVERISITY

text: human

text: ChOP-seq data aligned to human hg19 genome - BAM file format.

text: Homo sapiens

text: Homo sapiens

text: ChOP sequencing data aligned


text: GOTHENBURG UNIVERISITY

text: public

text: human

text: ChRIP-seq data aligned to human hg19 genome - BAM file format.

text: Homo sapiens

text: Homo sapiens

text: ChRIP sequencing data aligned


text: GOTHENBURG UNIVERISITY

text: public

text: human

text: RNAseq raw FASTQ file from sequencing of siBT cell line.

text: Homo sapiens

text: Homo sapiens

text: EZH2si RNA sequencing data of BT RAW


text: GOTHENBURG UNIVERISITY

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: MEG3si RNA sequencing data of BT RAW


text: GOTHENBURG UNIVERISITY

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Control-si RNA sequencing data of BT RAW


text: MDC

text: public

text: Norway rat

text: miRNA expression in the heart of BN-Lx rat

text: Rattus norvegicus

text: Rattus norvegicus

text: BN-Lx

characteristic: strain

text: heart

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: MDC

text: public

characteristic: Submitter Id

text: Norway rat

text: miRNA expression in the heart of SHR/Ola rat

text: Rattus norvegicus

text: Rattus norvegicus

text: SHR/Ola

text: heart


characteristic: ENA-FIRST-PUBLIC

text: MDC

text: public

text: Norway rat

text: miRNA expression in the liver of BN-Lx rat

characteristic: description

text: Rattus norvegicus

text: Rattus norvegicus

text: BN-Lx

text: liver


characteristic: ENA-LAST-UPDATE

text: MDC

text: public

text: Norway rat

text: miRNA expression in the liver of SHR/Ola rat

text: Rattus norvegicus

text: Rattus norvegicus

text: SHR/Ola

text: liver


text: public

characteristic: clone

text: baker's yeast

characteristic: common name

text: unmutated

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UB

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: missing

characteristic: collection date

text: No

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

characteristic: isolation source host-associated

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica serovar Enteritidis

characteristic: organism

text: missing

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: AAU, India

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: rumen microbiome

text: Bos indicus

text: Bos indicus

text: ebi workshop

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UNIBE-ISME

text: public

text: Warmblood

characteristic: breed

text: Peripheral blood mononuclear cells (PBMCs)

characteristic: cell type

text: horse

characteristic: common name

text: Equus caballus

text: Equus caballus

text: Equine PBMCs


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 6 microg/ml for 24h

characteristic: stimulation

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

characteristic: organism

text: Equus caballus

text: LPS 250 ng/ml for 24h

text: Equine PBMCs stimulated with LPS


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: RCA 4 microg/ml for 24h

text: Equine PBMCs stimulated with RCA


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: RCA 1 microg/ml for 24h

text: Equine PBMCs stimulated with RCA


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 12 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 9 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: LPS 5 microg/ml for 24h

text: Equine PBMCs stimulated with LPS


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: Equine PBMCs


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 9 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 6 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: LPS 250 ng/ml for 24h

text: Equine PBMCs stimulated with LPS


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: RCA 4 microg/ml for 24h

text: Equine PBMCs stimulated with RCA


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: RCA 1 microg/ml for 24h

text: Equine PBMCs stimulated with RCA


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 12 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: LPS 5 microg/ml for 24h

text: Equine PBMCs stimulated with LPS


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: LPS 10 microg/ml for 24h

text: Equine PBMCs stimulated with LPS


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: Equine PBMCs


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 6 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: LPS 250 ng/ml for 24h

text: Equine PBMCs stimulated with LPS


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: RCA 4 microg/ml for 24h

text: Equine PBMCs stimulated with RCA


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: RCA 1 microg/ml for 24h

text: Equine PBMCs stimulated with RCA


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 12 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 9 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: LPS 80 pg/ml for 24h

text: Equine PBMCs stimulated with LPS


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: Equine PBMCs


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 9 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 6 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: LPS 250 ng/ml for 24h

text: Equine PBMCs stimulated with LPS


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: RCA 4 microg/ml for 24h

text: Equine PBMCs stimulated with RCA


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: RCA 1 microg/ml for 24h

text: Equine PBMCs stimulated with RCA


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: HDE 12 microg/ml for 24h

text: Equine PBMCs stimulated with HDE


text: UNIBE-ISME

text: public

text: Warmblood

text: horse

text: Equus caballus

text: Equus caballus

text: LPS 5 microg/ml for 24h

text: Equine PBMCs stimulated with LPS


text: MDC

text: public

text: Norway rat

text: RNAseq of total liver RNA

characteristic: description

text: Rattus norvegicus

text: Rattus norvegicus

text: male

characteristic: sex

text: BN

characteristic: strain

text: BN-Lx

characteristic: sub strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: MDC

characteristic: INSDC center name

text: public

text: Norway rat

text: Ribo-Profiling of total liver RNA

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: BN

text: BN-Lx


text: MDC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Norway rat

text: RNAseq of total liver RNA

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: SHR

text: SHR/Ola


characteristic: ENA-LAST-UPDATE

text: MDC

text: public

characteristic: Submitter Id

text: Norway rat

text: Ribo-Profiling of total liver RNA

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: SHR

text: SHR/Ola

characteristic: title


text: MDC

text: public

text: Norway rat

characteristic: common name

text: RNAseq of total heart RNA

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: BN

text: BN-Lx


text: MDC

text: public

text: Norway rat

text: Ribo-Profiling of total heart RNA

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: male

text: BN

text: BN-Lx


text: MDC

text: public

text: Norway rat

text: RNAseq of total heart RNA

characteristic: description

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: SHR

text: SHR/Ola


text: MDC

text: public

text: Norway rat

text: Ribo-Profiling of total heart RNA

text: Rattus norvegicus

text: Rattus norvegicus

text: male

characteristic: sex

text: SHR

text: SHR/Ola


Brucella melitensis MY1483/09

text: public

text: Brucella melitensis MY1483/09

tag: Namespace:Tropical Infectious Diseases Research and Education Centre

characteristic: collection date

text: Malaysia

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host

characteristic: isolate

text: Brucella melitensis

text: Brucella melitensis

text: Ion Torrent PGM

characteristic: sequencing method

characteristic: specimen voucher

text: Brucella melitensis MY1483/09


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: DTU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Salmonella enterica subsp. enterica serovar Agona


characteristic: ENA-LAST-UPDATE

text: UB

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: SRA accession

characteristic: Submitter Id

text: missing

text: No

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolation source host-associated

characteristic: isolation source non-host-associated

text: missing

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: GHENT UNIVERSITY

text: public

tag: Namespace:GHENT UNIVERSITY

text: domestic silkworm

characteristic: common name

text: no/low CPV infection

characteristic: description

text: Bombyx mori

characteristic: organism

text: Bombyx mori

characteristic: title


characteristic: ENA-LAST-UPDATE

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: domestic silkworm

text: high CPV infection

text: Bombyx mori

text: Bombyx mori


text: USMHRP,WRAIR

text: public

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: Sydney University

text: public

tag: Namespace:Sydney University

text: human

text: Melanoma Tumor

text: Homo sapiens

text: Homo sapiens

text: Patient C1 Pre-treatment


text: University of Cyprus

text: public

tag: Namespace:University of Cyprus

text: human

text: Patients with severe thin basement membrane nephropathy (TBMN) were screened for mutations in COL4A3, COL4A4, COL4A5, FN1 and CFHR5. Samples were sequenced using Ion Torrent PGM and a custom Ampliseq panel.

text: Homo sapiens

text: Homo sapiens

text: Frequency of COL4A3/COL4A4 mutations among families segregating glomerular microscopic hematuria and evidence for activation of the unfolded protein response


Brucella melitensis Phil1136/12

text: Tropical Infectious Diseases Research and Education Centre

text: public

text: Brucella melitensis Phil1136/12

characteristic: collection date

text: Brucella melitensis Phil1136/12

text: Malaysia

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host

characteristic: isolate

text: Brucella melitensis

text: Brucella melitensis

characteristic: specimen voucher

text: Brucella melitensis Phil1136/12


E-MTAB-2917:ETEC H10407 crp-FLAG 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: E-MTAB-2917:ETEC H10407 crp-FLAG 2

tag: Namespace:The Wadsworth Center, New York State Department of Health

text: ArrayExpress

characteristic: broker name

text: Protocols: 5mL cultures were set up in M9 minimal media, supplemented with 0.4% fructose and 0.2% casamino acids and grown for 48 hours at 37 degrees C/250rpm. Overnight cultures were subcultured 1:100 and grown for 7 hours at 37 degrees. Cultures were crosslinked by adding formaldehyde to a final concentration of 1%, incubated for 20 minutes at room temperature, and quenched by adding glycine to a final concentration of 0.5 M. Cells were washed once in original culture volume of 1X TBS then washed again in 1 mL of 1X TBS. The supernatant was removed and the pellet was stored at -20degrees C. Extraction and Library construction occur in the same protocol: Pelleted cells were resuspended in FA lysis buffer containing 2 mg/mL of lysozyme. Samples were incubated for 30 minutes at 37degrees C, chilled on ice for at least 5 minutes, then sonicated for 30 minutes, with 30 s pulses followed by 30 s off. Samples were spun at maximum speed in a microcentrifuge, the supernatants were removed and diluted to 1 mL lysate per 20 mL original culture volume. Samples were immunoprecipitated according to the following procedure: for every 800 uL of chromatin, 25 uL of protein A beads (50% TBS slurry), and 2 uL anti-FLAG antibody (M2) were added. Samples were incubated on rotisserie rotater for 90 minutes at room temperature. Samples were then transferred to Spin-X columns (Corning) and washed twice with FA lysis buffer (150mM NaCl), 3 minutes each wash, rotating at room temperature. The samples were spun at 4000 rpm after each wash. The samples were then washed twice in the same way with 10 mM Tris-HCl, pH 7.5. The immunoprecipitated DNA, still attached to protein A beads, were then treated with Quick Blunting Kit (NEB): The samples were resuspended in the following mixture: 10ul 10x quick blunting buffer, 10ul dNTP mix (kit supplied), 80ul dH2O, 2ul blunt enzyme mix. The samples were incubated at room temperature, while rotating, for 30 minutes. The samples were then washed twice with FA lysis buffer (150mM NaCl), as described above, and then washed twice with 10 mM Tris-HCl, pH 8.0. The samples were then A tailed, using Klenow (3-5exo), from NEB: The samples were resuspended in the following mixture: 10ul 10X NEBuffer 2, 2ul 100mM dATP (NEB), 88ul dH2O, 2ul Klenow. The samples were incubated at 37 degrees, while rotating, for 30 minutes. The samples were then washed twice with FA lysis buffer (150mM NaCl), as described above, and then washed twice with 10 mM Tris-HCl, pH 7.5. Illumina adapters were then ligated to the samples using the NEB Quick Ligation kit. The samples were resuspended in the following mixture: 100ul 1x ligase buffer (50ul 2x buffer + 50ul dH2O), 1 ul bracoded adapter, 4ul quick ligase. The samples were then incubated at room temperature, while rotating for 15 minutes. After incubation, the samples were washed, as decribed above, in the following buffers: FA lysis buffer; FA lysis buffer+500 mM NaCl; ChIP wash buffer; TE (10 mM Tris pH 8.0, 1 mM EDTA). Spin-X columns were transferred to a new microcentrifuge tube and 100 uL of ChIP elution buffer was added. Samples were incubated for 10 minutes at 65 degrees C then spun for 1 min at 1500 x g. Eluted DNA was then transferred to a new microcentrifuge tube and incubated for 10 minutes in a boiling water bath to de-crosslink samples. The samples were phenol extracted and ethanol precipitated. The samples were resuspended in 11ul. To determine cycle numbers for library amplification of each sample, 1ul ChIP DNA was used as a template (diluted 1/8 to fill 3 wells) for Real Time PCR (7500 fast, ABI) with Illumina primers 1.1 and 2.1 (1uM ea). The manual ct was set to 0.1 and '3' was added to the cycle number to determine the amount of cycles for library amplification. The ChIP DNA was used as a template, using the determined cycle number of : 95 degrees for 30 seconds, 60 degrees for 30 seconds, 72 degrees for 30 seconds. The following 50ul PCR reaction was used: 5ul 10x taq buffer, 8ul ChIP DNA with ligated adapters, 1.0 ul Illumina primer 1.1 (100uM), 1.0 ul Illumina primer 2.1 (100uM), 0.4 ul dNTP mix (25mM each), 1.5 ul taq, 33.6 ul dH2O. The libraries were checked on an 8% non-denaturing acrylamide gel. The smear from 200bp to 500bp was cut out and gel purified. The bar-coded libraries were quantified using Qubit and pooled at equimolar concentrations.

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 crp-FLAG 2


E-MTAB-2917:ETEC H10407 Sigma70 1

text: The Wadsworth Center, New York State Department of Health

text: public

text: E-MTAB-2917:ETEC H10407 Sigma70 1

text: ArrayExpress

characteristic: description

text: Escherichia coli ETEC H10407

characteristic: organism

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 Sigma70 1

characteristic: title


E-MTAB-2917:ETEC H10407 beta 1

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-2917:ETEC H10407 beta 1

text: ArrayExpress

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 beta 1


name: E-MTAB-2917:ETEC H10407 untagged control 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 untagged control 2


E-MTAB-2917:ETEC H10407 beta 2

text: public

text: E-MTAB-2917:ETEC H10407 beta 2

characteristic: Submitter Id

text: ArrayExpress

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 beta 2


E-MTAB-2917:ETEC H10407 Sigma70 2

text: public

text: E-MTAB-2917:ETEC H10407 Sigma70 2

text: ArrayExpress

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 Sigma70 2


E-MTAB-2917:ETEC H10407 crp-FLAG 1

text: public

text: E-MTAB-2917:ETEC H10407 crp-FLAG 1

text: ArrayExpress

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 crp-FLAG 1


name: E-MTAB-2917:ETEC H10407 untagged control 1

text: public

text: ArrayExpress

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 untagged control 1


E-MTAB-2917:ETEC H10407 H-NS 1

text: public

text: E-MTAB-2917:ETEC H10407 H-NS 1

text: ArrayExpress

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 H-NS 1


E-MTAB-2917:ETEC H10407 H-NS 2

text: public

text: E-MTAB-2917:ETEC H10407 H-NS 2

text: ArrayExpress

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: ETEC H10407 H-NS 2


text: HKI JENA

text: public

tag: Namespace:HKI JENA

text: WGS sequencing and assembly of Penicillium brasilianum MG11

text: Penicillium brasilianum

text: Penicillium brasilianum

text: WGS of Penicillium brasilianum MG11


text: Yuan

text: public

text: Salmonella enterica subsp. enterica serovar Typhi

text: Illumina

characteristic: sequencing method

characteristic: strain

text: Whole-genome sequences and comparative genomics of Salmonella enterica serovar Typhi isolates from patients in China


text: Yuan

text: public

text: Illumina

text: Salmonella enterica subsp. enterica serovar Typhi ZJ98-11


Polynesia massiliensis MS3

text: URMITE

text: public

text: Polynesia massiliensis MS3

text: Clostridiaceae bacterium MS3

text: Clostridiaceae bacterium MS3

text: Polynesia massiliensis gen. nov, sp. nov. genome


text: OX

text: public

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: Neisseria lactamica

text: Neisseria lactamica


Necropsobacter senegalensis FF6

text: URMITE

text: public

text: Necropsobacter senegalensis FF6

text: draft genome sequence and description of Necropsobacter

text: Necropsobacter massiliensis

text: Necropsobacter massiliensis

text: Draft Genome sequence of Necropsobacter senegalensis strain FF6T


text: IMPERIAL COLLEGE LONDON

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: TB


text: DELFT UNIVERSITY OF TECHNOLOGY

text: public

tag: Namespace:DELFT UNIVERSITY OF TECHNOLOGY

text: Escherichia coli str. K-12 substr. MG1655


text: UFPA

text: public

text: human

characteristic: common name

text: Gastric Cancer miRNome sequencing sample. Instestinal Gastric Cancer stage T4N1M0

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Gastric Cancer miRNome


characteristic: ENA-CHECKLIST

text: UFPA

text: public

text: human

text: Gastric Cancer miRNome sequencing sample. Instestinal Gastric Cancer stage T1N0M0

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Gastric Cancer miRNome


characteristic: ENA-FIRST-PUBLIC

text: UFPA

text: public

text: human

text: Gastric Cancer miRNome sequencing sample. Instestinal Gastric Cancer stage T1N1M0

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Gastric Cancer miRNome


characteristic: External Id

text: UFPA

text: public

text: human

text: Gastric Cancer miRNome sequencing sample. Difuse Gastric Cancer stage T1N0M0.

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Gastric Cancer miRNome


text: UFPA

text: public

text: human

text: Gastric Cancer Adjacent miRnome quantification. Intestinal Gastric Cancer stage T4N1M0 Adjacent Tissue

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Gastric Cancer Adjacent miRnome


text: UFPA

text: public

text: human

text: Gastric Cancer Adjacent miRnome quantification. Intestinal Gastric Cancer stage T1N0M0 Adjacent Tissue

text: Homo sapiens

text: Homo sapiens

text: stomach

text: Gastric Cancer Adjacent miRnome