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text: ENVO:soil

text: soil metagenome

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: U Groningen

text: False

text: True

text: completed

text: soil

text: May

text: soil metagenome


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 11/1/47 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 6ANOVEMBER

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

characteristic: host subject id

text: soil metagenome

characteristic: organism

text: U Groningen

text: False

text: True

characteristic: public

text: completed

text: soil

text: November

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 9/1/47 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 6ASEPTEMBER

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

text: soil metagenome

text: U Groningen

text: False

text: True

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: September

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 1/7/47 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 6CJULY

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: U Groningen

text: False

text: True

text: completed

text: soil

text: July

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 5/1/47 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 6CMAY

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

characteristic: host subject id

text: soil metagenome

characteristic: organism

text: U Groningen

text: False

text: True

characteristic: public

text: completed

text: soil

text: May

text: soil metagenome


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 11/1/47 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 6CNOVEMBER

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

text: soil metagenome

text: U Groningen

text: False

text: True

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: November

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 9/1/47 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 6CSEPTEMBER

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: U Groningen

text: False

text: True

text: completed

text: soil

text: September

text: soil metagenome


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 1/7/47 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 6DJULY

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

characteristic: host subject id

text: soil metagenome

characteristic: organism

text: U Groningen

text: False

text: True

characteristic: public

text: completed

text: soil

text: July

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 5/1/47 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 6DMAY

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

text: soil metagenome

text: U Groningen

text: False

text: True

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: May

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 11/1/47 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 6DNOVEMBER

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: U Groningen

text: False

text: True

text: completed

text: soil

text: November

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 9/1/47 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 6DSEPTEMBER

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

characteristic: host subject id

text: soil metagenome

characteristic: organism

text: U Groningen

text: False

text: True

characteristic: public

text: completed

text: soil

text: September

text: soil metagenome


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 1/7/07 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 8AJULY

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

text: soil metagenome

text: U Groningen

text: False

text: True

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: July

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 5/1/07 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 8AMAY

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: U Groningen

text: False

text: True

text: completed

text: soil

text: May

text: soil metagenome


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 11/1/07 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 8ANOVEMBER

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

characteristic: host subject id

text: soil metagenome

characteristic: organism

text: U Groningen

text: False

text: True

characteristic: public

text: completed

text: soil

text: November

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 9/1/07 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 8ASEPTEMBER

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

text: soil metagenome

text: U Groningen

text: False

text: True

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: September

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 1/7/07 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 8BJULY

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: U Groningen

text: False

text: True

text: completed

text: soil

text: July

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 5/1/07 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 8BMAY

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

characteristic: host subject id

text: soil metagenome

characteristic: organism

text: U Groningen

text: False

text: True

characteristic: public

text: completed

text: soil

text: May

text: soil metagenome


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 11/1/07 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 8BNOVEMBER

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

text: soil metagenome

text: U Groningen

text: False

text: True

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: November

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 9/1/07 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 8BSEPTEMBER

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: U Groningen

text: False

text: True

text: completed

text: soil

text: September

text: soil metagenome


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 1/7/07 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 8CJULY

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

characteristic: host subject id

text: soil metagenome

characteristic: organism

text: U Groningen

text: False

text: True

characteristic: public

text: completed

text: soil

text: July

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 5/1/07 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 8CMAY

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

text: soil metagenome

text: U Groningen

text: False

text: True

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: May

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: 11/1/07 0:00

text: soil metagenome

characteristic: common name

text: The Netherlands

characteristic: country

text: soil sample replicate 8CNOVEMBER

characteristic: description

text: True

characteristic: elevation

text: ENVO:temperate biome

characteristic: env biome

text: ENVO:saline marsh

characteristic: env feature

text: ENVO:soil

characteristic: env matter

text: soil metagenome

characteristic: host common name

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: U Groningen

text: False

text: True

text: completed

text: soil

text: November

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: False

text: 9/1/07 0:00

text: soil metagenome

text: The Netherlands

text: soil sample replicate 8CSEPTEMBER

text: True

text: ENVO:temperate biome

text: ENVO:saline marsh

text: ENVO:soil

text: soil metagenome

characteristic: host subject id

text: soil metagenome

characteristic: organism

text: U Groningen

text: False

text: True

characteristic: public

text: completed

text: soil

text: September

text: soil metagenome


text: public

tag: Namespace:RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCE, CAS

text: forest soil

characteristic: description

text: soil metagenome

text: soil metagenome

characteristic: title


text: RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCE, CAS

text: public

text: forest soil

text: soil metagenome

text: soil metagenome


text: LANZHOU UNIVERSITY

text: public

tag: Namespace:LANZHOU UNIVERSITY

text: anaerobic digester metagenome

text: anaerobic digester metagenome

text: metagenomic samples from Rusitec fermenters


Paenibacillus rubiinfantis

text: URMITE

text: public

text: Paenibacillus rubiinfantis

text: Culturomics study

text: Paenibacillus sp. MT18

text: Paenibacillus sp. MT18

characteristic: strain

text: Paenibacillus rubiinfantis genome


text: MPICE

text: public

text: two-spotted ladybird beetle

characteristic: common name

text: Sham-injected adult beetles

text: adult

characteristic: dev stage

text: Adalia bipunctata

text: Adalia bipunctata

text: whole beetles

characteristic: tissue type

text: Adalia bipunctata


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPICE

text: public

text: two-spotted ladybird beetle

text: Sham-injected aadult beetles

text: adult

text: Adalia bipunctata

text: Adalia bipunctata

text: whole beetles

text: Adalia bipunctata


characteristic: External Id

text: MPICE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: two-spotted ladybird beetle

text: Bacteria-injected adult beetles

text: adult

text: Adalia bipunctata

text: Adalia bipunctata

text: whole beetles

text: Adalia bipunctata


text: MPICE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: seven-spotted ladybird

text: Sham-injected adult beetles

text: adult

text: Coccinella septempunctata

text: Coccinella septempunctata

text: whole beetle

text: Coccinella transcriptome


text: MPICE

text: public

characteristic: Submitter Id

text: seven-spotted ladybird

text: Bacteria-injected adult beetles

text: adult

text: Coccinella septempunctata

characteristic: organism

text: Coccinella septempunctata

text: whole beetle

text: Coccinella transcriptome


Paenibacillus senegalomassiliensis

text: URMITE

text: public

text: Paenibacillus senegalomassiliensis

text: Culturomics study

characteristic: description

text: Paenibacillus sp. SIT18

text: Paenibacillus sp. SIT18

text: Paenibacillus senegalomassiliensis genome


text: EMBL

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fruit fly

text: Protocols: Flies expressing EGFP-CBP20 under control of a mesodermal enhancer were grown in population cages at 25 degrees. After three/four 1 hr pre-lays, the flies were allowed to lay for 1 or 2 hrs, after which the embryos were aged at the same temperature to the appropriate time-point. The embryos were then dochorionated using 50% bleach, washed with distillate water and PBT (PBS + 1% Triton X-100), and directly subjected to homogenization on ice. All steps were done at 4C. 500 ul of embryo suspension was added to 6.5 ml Schneider???s media with Actinomycin D in a 15 ml dounce homogenizer on ice and dounced with a loose pestle 7 times, in aliquots of less than 0.0625 g of embryos. Material from two douncing rounds was combined in one 15 ml tube and centrifuged at 600 rpm for 5 min at 4C. Supernatant was transferred into a clean tube and centrifuged at 1700 rpm for 10 min at 4C. Supernatant was discarded, and 250 ul of Schneider???s media complemented with 8% fetal bovine serum and 1 ug/ml of Actinomycin D was added to the pellet. All resuspended pellets were combined into a single tube, cells were gently passed through a 18-gauge needle 5 times and sieved through a 40 um sieve into a 50 ml tube. Approximately 5% of the total sample was transferred into a RNAse free 1.5ml tube and centrifuged at 800 g for 10 min at 4C. 600 ul TRIzol was added to the pellet and saved as unsorted sample. Remaining sample was used for fluorescence activated cell sorting (FACS). Cell sorter (MoFlo, Beckman Coulter) was precooled at 4C and run with 70 um nozzle and 5,000 ??? 10,000 cells per second. Sorted cells were collected in 5 ml round bottom polypropylene tubes in 500 ul Seecof saline (6 mM Na2HPO4, 3.67 mM KH2PO4, 106 mM NaCl, 26.8 mM KCl, 6.4 mM MgCl2, 2.25 mM CaCl2, pH 6.8) supplemented with 0.1 U/ul RNAse inhibitor. Sorted cells were aliquoted in low binding RNAse free tubes and centrifuged at 800 g 10 min at 4C. Pellet was resuspended in 150 ul TRIzol LS and all samples were pooled into a single tube before proceeding with RNA isolation. RNA isolation was done according to manufacturer???s instructions for TRIzol LS, including overnight precipitation step with 1 ul glycogen at -80C. RNA was treated with RNAse free DNAse I (Roche) for 30 min and purified with Agencourt RNAclean XP beads (Beckam Coulter) according to manufacturer???s instructions. 'U' extracts: RNA extracted from cells before sorting (see below) 'S' extracts: RNA extracted from sorted cells. Total RNA was depleted from rRNA, using an strategy based on Khodor et al, Genes&Dev 2011. Briefly, 32 biotinylated oligos annealing Drosophila rRNA were used for retrotranscription of 1-5ug of total RNA, and the RNA-cDNA duplex was pulled-down with streptavidin-conjugated Dynabeads. The removal was performed 2 consecutive times. Then, RNA-seq libraries were prepared using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina (protocol B). Barcoded Y-shaped adapters were used for ligation, and standard common PCR primers for Illumina were used for amplification, tipically 14-15 cycles.

text: stage 8-9

characteristic: developmental stage

text: egg laying

characteristic: initial time point

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Mesodermal cells

characteristic: organism part

text: Drosophila melanogaster

characteristic: title


Ruminococcus phoceensis

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

text: Ruminococcus phoceensis

text: Culturomics study of the human gut

text: Ruminococcus sp. AT10

text: Ruminococcus sp. AT10

characteristic: strain

text: Ruminococcus phoceensis genome


characteristic: ArrayExpress-DevelopmentalStage

text: Embryo

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


Sanguibacteroides massiliensis

text: URMITE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sanguibacteroides massiliensis

characteristic: Submitter Id

text: Sanguibacteroides massiliensis was isolated from stool in a healthy patient as part of a culturomics study aimaing at cultivating all bacteria in human feces.

characteristic: description

text: Sanguibacteroides sp. GM7

characteristic: organism

text: Sanguibacteroides sp. GM7

text: Sanguibacteroides massiliensis genome


name: Total metagenome of luminal content of group HFHS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KYUNG HEE UNIVERSITY

text: public

tag: Namespace:KYUNG HEE UNIVERSITY

text: house mouse

text: fecal sample

characteristic: isolation source

characteristic: lab host

text: Mus musculus

text: Mus musculus

characteristic: title


name: Total metagenome of mucosal content of group HFHS

text: KYUNG HEE UNIVERSITY

text: public

text: house mouse

text: fecal sample

text: Mus musculus

text: Mus musculus


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:090mut_7830_ACAGTG_read1.fastq.gz

tag: Namespace:Centre for Genomic Regulation, CRG

text: ArrayExpress

characteristic: broker name

text: Protocols: Mycoplasma pneumoniae cells were washed twice with PBS and lysated with 700 l of Qiazol buffer. RNA extractions were performed by using miRNeasy mini Kit (Qiagen) following the instructions of the manufacturer. Libraries for RNA-seq were prepared following directional RNA-seq library preparation and sequencing. Briefly, 1 g of total RNA was fragmented to ~100-150 nt using NEB Next Magnesium RNA Fragmentation Module (ref. E6150S, NEB). Treatments with Antarctic phosphatase (ref. M0289S, NEB) and PNK (ref. M0201S, NEB) were performed in order to make the 5 and 3 ends of the RNA available for adapter ligation. Samples were further processed using the TruSeq small RNA Sample Prep Kit (ref. RS-200-0012, Illumina) according to the manufacturer's protocol. In summary, 3 adapters and subsequently 5 adapters were ligated to the RNA. cDNA was synthesized using reverse transcriptase (SuperScript II, ref. 18064-014, Invitrogen) and a specific primer (RNA RT Primer) complementary to the 3 RNA adapter. cDNA was further amplified by PCR using indexed adapters supplied in the kit. Finally, size selection of the libraries pas performed using 6% Novex TBE Gels (ref. EC6265BOX, Life Technologies). Fragments with insert sizes of 100 to 130 bp were cut from the gel, and cDNA was precipitated and eluted in 10 l of elution buffer.

text: Overexpression ncMPN090

characteristic: genotype

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Genomic Regulation, CRG

characteristic: INSDC center name

text: public

text: E-MTAB-4081:090mut_7830_ACAGTG_read2.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN090

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4081:098mut_7831_GCCAAT_read1.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN098

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4081:098mut_7831_GCCAAT_read2.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN098

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:208mut_7828_TTAGGC_read1.fastq.gz

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: Overexpression ncMPN007

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


characteristic: ENA-CHECKLIST

text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:208mut_7828_TTAGGC_read2.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN007

text: Mycoplasma pneumoniae

characteristic: organism

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


characteristic: ENA-FIRST-PUBLIC

text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:230mut_7826_ATCACG_read1.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN230

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:230mut_7826_ATCACG_read2.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN230

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:283mut_7833_ACTTGA_read1.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN283

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:283mut_7833_ACTTGA_read2.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN283

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:289mut_7827_CGATGT_read1.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN289

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:289mut_7827_CGATGT_read2.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN289

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:306mut_7836_GGCTAC_read1.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN306

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:306mut_7836_GGCTAC_read2.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN306

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:312mut_7837_CTTGTA_read1.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN312

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:312mut_7837_CTTGTA_read2.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN312

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:323mut_7838_AGTCAA_read1.fastq.gz

text: ArrayExpress

text: Overexpression ncMPN323

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation, CRG

text: public

text: E-MTAB-4081:323mut_7838_AGTCAA_read2.fastq.gz

text: ArrayExpress

text: Protocols: Mycoplasma pneumoniae cells were washed twice with PBS and lysated with 700 l of Qiazol buffer. RNA extractions were performed by using miRNeasy mini Kit (Qiagen) following the instructions of the manufacturer. Libraries for RNA-seq were prepared following directional RNA-seq library preparation and sequencing. Briefly, 1 g of total RNA was fragmented to ~100-150 nt using NEB Next Magnesium RNA Fragmentation Module (ref. E6150S, NEB). Treatments with Antarctic phosphatase (ref. M0289S, NEB) and PNK (ref. M0201S, NEB) were performed in order to make the 5 and 3 ends of the RNA available for adapter ligation. Samples were further processed using the TruSeq small RNA Sample Prep Kit (ref. RS-200-0012, Illumina) according to the manufacturer's protocol. In summary, 3 adapters and subsequently 5 adapters were ligated to the RNA. cDNA was synthesized using reverse transcriptase (SuperScript II, ref. 18064-014, Invitrogen) and a specific primer (RNA RT Primer) complementary to the 3 RNA adapter. cDNA was further amplified by PCR using indexed adapters supplied in the kit. Finally, size selection of the libraries pas performed using 6% Novex TBE Gels (ref. EC6265BOX, Life Technologies). Fragments with insert sizes of 100 to 130 bp were cut from the gel, and cDNA was precipitated and eluted in 10 l of elution buffer.

text: Overexpression ncMPN323

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: UNIVERSITY OF WARWICK

text: public

tag: Namespace:UNIVERSITY OF WARWICK

text: HC15b2 genome

text: Pseudomonas phage HC15b2

text: Pseudomonas phage HC15b2


text: ICL-SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: De Duve Institute

text: public

tag: Namespace:De Duve Institute

text: human

text: Tissue DNA from a patient with Blue Rubber Bleb Nevus

text: Homo sapiens

text: Homo sapiens

text: Blue Rubber Bleb Nevus

characteristic: tissue type

text: Tissue DNA from BRBN patient

characteristic: title


text: De Duve Institute

text: public

text: human

text: Blood DNA from a patient with Blue Rubber Bleb Nevus

text: Homo sapiens

text: Homo sapiens

text: blood

text: Blood DNA from BRBN patient


text: De Duve Institute

text: public

text: human

text: Tissue DNA from a patient with multifocal venous malformation

text: Homo sapiens

text: Homo sapiens

text: multifocal venous malformation

text: Tissue DNA from Multifocal VM patient


text: De Duve Institute

text: public

text: human

text: Blood DNA from a patient with multifocal venous malformation

text: Homo sapiens

text: Homo sapiens

text: blood

text: Blood DNA from Multifocal VM patient


E-MTAB-4027:SCV 11

text: public

text: E-MTAB-4027:SCV 11

tag: Namespace:Archaea Centre, Department of Biology, University of Copenhagen

text: ArrayExpress

characteristic: broker name

text: Protocols: 1x Sulfolobus medium supplemented with 0.2% sucrose, 0.2% vitamin-free casamino acids (Difco Vitamin Assay, BD), vitamin solution (Zillig et al., 1993), 0.02 mg/ml uracil TRIzol extraction, isopropanol precipitation containing 15ul glycogen (GlycoBlue), DNAseI treatment (Ambion) Total RNA library, stranded, rRNA depleted

text: Sulfolobus+SCVU medium

characteristic: growth condition

characteristic: infect

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

unit: hour

characteristic: time

text: SCV 11


E-MTAB-4027:SCV 11 (paired)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Archaea Centre, Department of Biology, University of Copenhagen

characteristic: INSDC center name

text: public

text: E-MTAB-4027:SCV 11 (paired)

text: ArrayExpress

text: Sulfolobus+SCVU medium

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

characteristic: strain

text: SCV 11 (paired)


E-MTAB-4027:SCV 16

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4027:SCV 16

text: ArrayExpress

text: Sulfolobus+SCVU medium

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: SCV 16


E-MTAB-4027:SCV 16 (paired)

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4027:SCV 16 (paired)

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: Sulfolobus+SCVU medium

text: Sulfolobus solfataricus P2

characteristic: organism

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: SCV 16 (paired)


E-MTAB-4027:SCV 2

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4027:SCV 2

text: ArrayExpress

text: Sulfolobus+SCVU medium

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: SCV 2

characteristic: title


E-MTAB-4027:SCV 2 (paired)

text: public

text: E-MTAB-4027:SCV 2 (paired)

text: ArrayExpress

characteristic: broker name

text: Sulfolobus+SCVU medium

characteristic: growth condition

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: SCV 2 (paired)


E-MTAB-4027:SCV 7

text: public

text: E-MTAB-4027:SCV 7

text: ArrayExpress

text: Sulfolobus+SCVU medium

characteristic: infect

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

characteristic: time

text: SCV 7


E-MTAB-4027:SCV 7 (paired)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4027:SCV 7 (paired)

text: ArrayExpress

text: Sulfolobus+SCVU medium

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: SCV 7 (paired)


E-MTAB-4027:SCV Control

characteristic: INSDC center name

text: public

text: E-MTAB-4027:SCV Control

text: ArrayExpress

text: Sulfolobus+SCVU medium

text: uninfected

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

characteristic: strain

text: SCV Control


E-MTAB-4027:SCV Control (paired)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4027:SCV Control (paired)

text: ArrayExpress

text: Sulfolobus+SCVU medium

text: uninfected

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: SCV Control (paired)


E-MTAB-4027:TYS 12

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4027:TYS 12

text: ArrayExpress

text: Protocols: 1x Sulfolobus medium supplemented with 0.2% trypton, 0.1% yeast extract, 0.2% sucrose, 0.02 mg/ml uracil TRIzol extraction, isopropanol precipitation containing 15ul glycogen (GlycoBlue), DNAseI treatment (Ambion) Total RNA library, stranded, rRNA depleted

text: Sulfolobus+TYSU medium

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: TYS 12


E-MTAB-4027:TYS 12 (paired)

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4027:TYS 12 (paired)

characteristic: Submitter Id

text: ArrayExpress

text: Sulfolobus+TYSU medium

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: TYS 12 (paired)


E-MTAB-4027:TYS 15

text: public

text: E-MTAB-4027:TYS 15

text: ArrayExpress

characteristic: description

text: Sulfolobus+TYSU medium

text: Sulfolobus solfataricus P2

characteristic: organism

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: TYS 15


E-MTAB-4027:TYS 15 (paired)

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4027:TYS 15 (paired)

text: ArrayExpress

text: Sulfolobus+TYSU medium

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: TYS 15 (paired)

characteristic: title


E-MTAB-4027:TYS 2

text: public

text: E-MTAB-4027:TYS 2

text: ArrayExpress

characteristic: broker name

text: Sulfolobus+TYSU medium

characteristic: growth condition

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: TYS 2


E-MTAB-4027:TYS 2 (paired)

text: public

text: E-MTAB-4027:TYS 2 (paired)

text: ArrayExpress

text: Sulfolobus+TYSU medium

characteristic: infect

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

characteristic: time

text: TYS 2 (paired)


E-MTAB-4027:TYS 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4027:TYS 6

text: ArrayExpress

text: Sulfolobus+TYSU medium

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: TYS 6


E-MTAB-4027:TYS 6 (paired)

characteristic: INSDC center name

text: public

text: E-MTAB-4027:TYS 6 (paired)

text: ArrayExpress

text: Sulfolobus+TYSU medium

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

characteristic: strain

text: TYS 6 (paired)


E-MTAB-4027:TYS Control

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4027:TYS Control

text: ArrayExpress

text: Sulfolobus+TYSU medium

text: uninfected

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: TYS Control


E-MTAB-4027:TYS Control (paired)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4027:TYS Control (paired)

text: ArrayExpress

text: Sulfolobus+TYSU medium

text: uninfected

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: TYS Control (paired)


E-MTAB-4088:lincRNA-EPS-/- mouse 1 0hrs

characteristic: ENA-CHECKLIST

text: UMASS Medical School

text: public

text: E-MTAB-4088:lincRNA-EPS-/- mouse 1 0hrs

tag: Namespace:UMASS Medical School

characteristic: Submitter Id

text: ArrayExpress

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: LPS 100 ng/ml Strand specific library as described in pubmed ID 25505164

text: lncRNA-EPS-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: lincRNA-EPS-/- mouse 1 0hrs

text: lipopolysaccharide

characteristic: treatment


E-MTAB-4088:lincRNA-EPS-/- mouse 1 2hrs

characteristic: ENA-FIRST-PUBLIC

text: UMASS Medical School

text: public

text: E-MTAB-4088:lincRNA-EPS-/- mouse 1 2hrs

text: ArrayExpress

characteristic: broker name

text: bone marrow macrophage

text: house mouse

characteristic: description

text: lncRNA-EPS-/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: lincRNA-EPS-/- mouse 1 2hrs

characteristic: title

text: lipopolysaccharide


E-MTAB-4088:lincRNA-EPS-/- mouse 1 6hrs

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMASS Medical School

characteristic: INSDC center name

text: public

text: E-MTAB-4088:lincRNA-EPS-/- mouse 1 6hrs

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: lncRNA-EPS-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: time

text: lincRNA-EPS-/- mouse 1 6hrs

text: lipopolysaccharide


E-MTAB-4088:lincRNA-EPS-/- mouse 2 0hrs

text: UMASS Medical School

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4088:lincRNA-EPS-/- mouse 2 0hrs

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: lncRNA-EPS-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: lincRNA-EPS-/- mouse 2 0hrs

text: lipopolysaccharide


E-MTAB-4088:lincRNA-EPS-/- mouse 2 2hrs

characteristic: ENA-CHECKLIST

text: UMASS Medical School

text: public

characteristic: SRA accession

text: E-MTAB-4088:lincRNA-EPS-/- mouse 2 2hrs

characteristic: Submitter Id

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: lncRNA-EPS-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: lincRNA-EPS-/- mouse 2 2hrs

text: lipopolysaccharide


E-MTAB-4088:lincRNA-EPS-/- mouse 2 6hrs

text: UMASS Medical School

text: public

text: E-MTAB-4088:lincRNA-EPS-/- mouse 2 6hrs

text: ArrayExpress

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: lncRNA-EPS-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: lincRNA-EPS-/- mouse 2 6hrs

text: lipopolysaccharide


E-MTAB-4088:wt  mouse 1 0hrs

characteristic: ENA-FIRST-PUBLIC

text: UMASS Medical School

text: public

text: E-MTAB-4088:wt mouse 1 0hrs

text: ArrayExpress

characteristic: broker name

text: bone marrow macrophage

text: house mouse

text: wild type

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: wt mouse 1 0hrs

text: lipopolysaccharide

characteristic: treatment


E-MTAB-4088:wt mouse 1 2hrs

text: UMASS Medical School

text: public

text: E-MTAB-4088:wt mouse 1 2hrs

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

characteristic: description

text: wild type

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: wt mouse 1 2hrs

characteristic: title

text: lipopolysaccharide


E-MTAB-4088:wt mouse 1 6hrs

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMASS Medical School

characteristic: INSDC center name

text: public

text: E-MTAB-4088:wt mouse 1 6hrs

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: wild type

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: wt mouse 1 6hrs

text: lipopolysaccharide


E-MTAB-4088:wt mouse 2 0hrs

text: UMASS Medical School

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4088:wt mouse 2 0hrs

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: wild type

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: time

text: wt mouse 2 0hrs

text: lipopolysaccharide


E-MTAB-4088:wt mouse 2 2hrs

characteristic: ENA-CHECKLIST

text: UMASS Medical School

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4088:wt mouse 2 2hrs

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: wild type

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: wt mouse 2 2hrs

text: lipopolysaccharide


E-MTAB-4088:wt mouse 2 6hrs

text: UMASS Medical School

text: public

text: E-MTAB-4088:wt mouse 2 6hrs

characteristic: Submitter Id

text: ArrayExpress

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: wild type

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: wt mouse 2 6hrs

text: lipopolysaccharide


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Kennedy Institute of Rheumatology University of Oxford

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: oral gavage of helicobacter hepaticus at 1E8 bacterium on days 0,1 and 2 intraperitoneal injection of anti-IL10 receptor antibody at days 0 and 7 For simultaneous DNA and RNA extraction, pellets were dissolved in 500 ul extraction buffer (200 mM NaCl, 20 mM EDTA, 4 M guanidine thiocyanate, 1 % (v/v) I2-mercaptoethanol) and 210 ul 20 % (w/v) SDS and lysed with a bead beater twice for 2 minutes employing Lysing Matrix E tubes (MP Biomedicals). Samples were centrifuged at 8000 g for 5 minutes and the supernatant was diluted with 3 volumes of lysing buffer (ZR-Duet DNA/RNA Miniprep Kit, Zymo Research). DNA and RNA were further extracted employing the ZR-Duet DNA/RNA Miniprep Kit according to the manufacturera's instructions. Libraries were prepared using the PrepX ILM 32i DNA Library Kit Total RNA was depleted of ribosomal RNA using EpibioaTMs universal bacteria ribo-zero kit, single version. Libraries were constructed using the NEBNext Ultra directional RNA Library Prep Kit (E7420L).

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


text: Kennedy Institute of Rheumatology University of Oxford

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: colitis

characteristic: disease

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Max Planck Institute for Chemical Ecology

text: tobacco hornworm

text: Ovipositor of three days old virgin females (three individuals) of Manduca sexta

text: Manduca sexta

text: Manduca sexta


text: Max Planck Institute for Chemical Ecology

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: tobacco hornworm

text: Ovipositor of three days old mated females (three individuals) of Manduca sexta

text: Manduca sexta

text: Manduca sexta


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Diabetes Center, University of California, San Francisco (UCSF)

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: inguinal white adipose tissue RIBOZOL RNA EXTRACTION REAGENT Nugen Oviation Ultralow Library System

text: Prdm16 transgenic

characteristic: genetic modification

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: white adipose tissue

characteristic: organism part

text: Mus musculus


text: Diabetes Center, University of California, San Francisco (UCSF)

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Prdm16 transgenic

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: white adipose tissue

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: white adipose tissue

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: white adipose tissue

text: Mus musculus


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: Prdm16 transgenic

text: Mus musculus

text: Mus musculus

text: white adipose tissue

text: Mus musculus


text: UMASS Medical School

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: fruit fly

text: Protocols: Flies were maintained at 25C. Whole embryos were lysed and sonicated to isolate sheared chromatin for immunoprecipitation

text: embryo stage

characteristic: developmental stage

text: Transgenic UAS-E93-Myc strain

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole embryo

characteristic: tissue


characteristic: ENA-FIRST-PUBLIC

text: UMASS Medical School

text: public

characteristic: Submitter Id

text: ArrayExpress

text: fruit fly

characteristic: common name

text: embryo stage

text: Transgenic UAS-E93-Myc strain

characteristic: genotype

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Whole embryo

text: Input


text: EMBL-EBI

text: public

text: 6 to 8

unit: week

text: ArrayExpress

characteristic: broker name

text: CD4-positive, alpha-beta T cell

characteristic: cell type

text: house mouse

text: Protocols: Female C57BL6/N mice aged 6-8 weeks were infected intravenously with 0.2 ml Salmonella Typhimurium M525 containing 5x105 CFU of bacteria in sterile phosphate buffered saline (PBS, Sigma-Aldrich). At day 14 post infection (p.i.) mice were sacrificed with spleens and livers being harvested. Bacteria were enumerated from the livers by serial dilution and plating onto agar plates (Oxoid) to confirm levels of infection. Single-cell suspensions were prepared by homogenising spleens through 70 m strainers and lysing erythrocytes. Following incubation with CD16/CD32 blocking antibody, the cells were stained with titrated amounts of fluorochrome conjugated antibodies for CD44(FITC), CD62L(PE-CF594), TCR(PerCP-Cy5.5), CD8(APC-H7), CD161(BV421), and CD4(BV510). Cells were sorted as CD4+ CD8- TCRB+ CD161- CD44Hi CD62LLow. Capture and processing of single CD4+ T cells was performed using the Fluidigm C1 autoprep system. Cells were loaded at a concentration of 1700 cells l-1 onto C1 capture chips for 5-10 m cells. ERCC (External RNA Controls Consortium) spike-in RNAs (Ambion, Life Technologies) were added to the lysis mix. Reverse transcription and cDNA preamplification were performed using the SMARTer Ultra Low RNA kit (Clontech). Sequencing libraries were prepared using Nextera XT DNA Sample Preparation kit with 96 indices (Illumina), according to the protocol supplied by Fluidigm.

characteristic: description

text: Salmonella typhimurium

characteristic: infect

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

unit: day

characteristic: time


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 6 to 8

text: ArrayExpress

text: CD4-positive, alpha-beta T cell

text: house mouse

text: Protocols: Female C57BL6/N mice aged 6-8 weeks were infected intravenously with 0.2 ml Salmonella Typhimurium M525 containing 5x105 CFU of bacteria in sterile phosphate buffered saline (PBS, Sigma-Aldrich). At day 49 post infection (p.i.) mice were sacrificed with spleens and livers being harvested. Bacteria were enumerated from the livers by serial dilution and plating onto agar plates (Oxoid) to confirm levels of infection. Single-cell suspensions were prepared by homogenising spleens through 70 m strainers and lysing erythrocytes. Following incubation with CD16/CD32 blocking antibody, the cells were stained with titrated amounts of fluorochrome conjugated antibodies for CD44(FITC), CD127(PE), CD62L(PE-CF594), TCR(PerCP-Cy5.5), CD161(APC), CD8(APC-H7), CD4 (BV510), CD8(APC-H7), CD161(BV421), and CD4(BV510). Cells were sorted as CD4+ TCRB+ CD161- CD44+ CD62LLow CD127Hi. Capture and processing of single CD4+ T cells was performed using the Fluidigm C1 autoprep system. Cells were loaded at a concentration of 1700 cells l-1 onto C1 capture chips for 5-10 m cells. ERCC (External RNA Controls Consortium) spike-in RNAs (Ambion, Life Technologies) were added to the lysis mix. Reverse transcription and cDNA preamplification were performed using the SMARTer Ultra Low RNA kit (Clontech). Sequencing libraries were prepared using Nextera XT DNA Sample Preparation kit with 96 indices (Illumina), according to the protocol supplied by Fluidigm.

text: Salmonella typhimurium

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 6 to 8

characteristic: age

text: ArrayExpress

text: CD4-positive, alpha-beta T cell

text: house mouse

characteristic: common name

text: Protocols: Mice were sacrificed with spleens and livers being harvested. Single-cell suspensions were prepared by homogenising spleens through 70 m strainers and lysing erythrocytes. Following incubation with CD16/CD32 blocking antibody, the cells were stained with titrated amounts of fluorochrome conjugated antibodies for CD44(FITC), CD62L(PE-CF594), TCR(PerCP-Cy5.5), CD8(APC-H7), CD161(BV421), and CD4(BV510). Cells were sorted as CD4+ CD8- TCRB+ CD161- CD44Hi CD62LLow. Capture and processing of single CD4+ T cells was performed using the Fluidigm C1 autoprep system. Cells were loaded at a concentration of 1700 cells l-1 onto C1 capture chips for 5-10 m cells. ERCC (External RNA Controls Consortium) spike-in RNAs (Ambion, Life Technologies) were added to the lysis mix. Reverse transcription and cDNA preamplification were performed using the SMARTer Ultra Low RNA kit (Clontech). Sequencing libraries were prepared using Nextera XT DNA Sample Preparation kit with 96 indices (Illumina), according to the protocol supplied by Fluidigm.

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female


text: public

tag: Namespace:Max Planck Institute for Evolutionary Biology

text: western European house mouse

text: tp1 brain from CB population

characteristic: description

text: Cologne-Bonn, Germany

characteristic: geographical origin

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: M

text: brain

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: Max Planck Institute for Evolutionary Biology

text: public

text: western European house mouse

text: tp121 brain from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

characteristic: sex

text: brain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: western European house mouse

text: tp172 brain from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: western European house mouse

text: tp3a2 brain from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: western European house mouse

text: tp4a brain from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


characteristic: ENA-FIRST-PUBLIC

text: public

text: western European house mouse

text: tp51 brain from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: western European house mouse

text: tp710 brain from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


text: public

text: western European house mouse

characteristic: common name

text: tp81 brain from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


text: public

text: western European house mouse

text: tp1 gut from CB population

characteristic: description

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut


text: public

text: western European house mouse

text: tp121 gut from CB population

text: Cologne-Bonn, Germany

characteristic: geographical origin

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut


text: public

text: western European house mouse

text: 121 spleen from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: M

text: spleen


text: public

text: western European house mouse

text: tp4a gut from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: public

text: western European house mouse

text: tp81 gut from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut


text: public

text: western European house mouse

text: tp1 heart from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

characteristic: sex

text: heart


characteristic: ENA-LAST-UPDATE

text: public

text: western European house mouse

text: tp121 heart from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


characteristic: External Id

text: public

text: western European house mouse

text: tp172 heart from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


characteristic: INSDC center name

text: public

text: western European house mouse

text: tp3a2 heart from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


characteristic: INSDC first public

text: public

text: western European house mouse

text: tp4a heart from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


characteristic: INSDC last update

text: public

text: western European house mouse

text: tp51 heart from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


text: public

characteristic: INSDC status

text: western European house mouse

text: tp710 heart from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


characteristic: ENA-FIRST-PUBLIC

text: public

text: western European house mouse

text: tp81 heart from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


text: public

text: western European house mouse

text: tp1 kidney from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: kidney

characteristic: title


text: public

characteristic: SRA accession

text: western European house mouse

text: tp121 kidney from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: kidney


text: public

characteristic: Submitter Id

text: western European house mouse

text: tp172 kidney from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: kidney


text: public

text: western European house mouse

characteristic: common name

text: tp3a2 kidney from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: kidney


text: public

text: western European house mouse

text: tp81 muscle from CB population

characteristic: description

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: muscle


text: public

text: western European house mouse

text: tp4a spleen from CB population

text: Cologne-Bonn, Germany

characteristic: geographical origin

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: spleen


text: public

text: western European house mouse

text: tp51 spleen from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: M

text: spleen


text: public

text: western European house mouse

text: tp710 spleen from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: spleen

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: public

text: western European house mouse

text: tp81 spleen from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: spleen


text: public

text: western European house mouse

text: tp1 testis from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

characteristic: sex

text: testis


characteristic: ENA-LAST-UPDATE

text: public

text: western European house mouse

text: tp121 testis from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: testis


characteristic: External Id

text: public

text: western European house mouse

text: tp172 testis from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: testis


characteristic: INSDC center name

text: public

text: western European house mouse

text: tp3a2 testis from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: testis


characteristic: INSDC first public

text: public

text: western European house mouse

text: tp4a testis from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: testis


characteristic: INSDC last update

text: public

text: western European house mouse

text: tp51 testis from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: testis


text: public

characteristic: INSDC status

text: western European house mouse

text: tp710 testis from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: testis


characteristic: ENA-FIRST-PUBLIC

text: public

text: western European house mouse

text: tp81 testis from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: testis


text: public

text: western European house mouse

text: tp1 thyroid from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: thyroid

characteristic: title


text: public

characteristic: SRA accession

text: western European house mouse

text: tp121 thyroid from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: thyroid


text: public

characteristic: Submitter Id

text: western European house mouse

text: E1b thyroid from MC population

text: Massif Central, France

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: thyroid


text: public

text: western European house mouse

characteristic: common name

text: tp172 thyroid from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: thyroid


text: public

text: western European house mouse

text: tp3a2 thyroid from CB population

characteristic: description

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: thyroid


text: public

text: western European house mouse

text: tp4a thyroid from CB population

text: Cologne-Bonn, Germany

characteristic: geographical origin

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: thyroid


text: public

text: western European house mouse

text: tp710 thyroid from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: M

text: thyroid


text: public

text: western European house mouse

text: tp81 thyroid from CB population

text: Cologne-Bonn, Germany

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: thyroid

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: public

text: western European house mouse

text: 02FC_1 brain from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


text: public

text: western European house mouse

text: 05F1C1 brain from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

characteristic: sex

text: brain


characteristic: ENA-LAST-UPDATE

text: public

text: western European house mouse

text: 07F1C1 brain from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


characteristic: External Id

text: public

text: western European house mouse

text: 08F1_A brain from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


characteristic: INSDC center name

text: public

text: western European house mouse

text: 131 brain from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


characteristic: INSDC first public

text: public

text: western European house mouse

text: 132 brain from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


characteristic: INSDC last update

text: public

text: western European house mouse

text: 121 brain from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


text: public

characteristic: INSDC status

text: western European house mouse

text: 122 brain from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: brain


characteristic: ENA-FIRST-PUBLIC

text: public

text: western European house mouse

text: 02FC_1 gut from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut


text: public

text: western European house mouse

text: C12 thyroid from MC population

text: Massif Central, France

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: thyroid

characteristic: title


text: public

characteristic: SRA accession

text: western European house mouse

text: 05F1C1 gut from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut


text: public

characteristic: Submitter Id

text: western European house mouse

text: 07F1C1 gut from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut


text: public

text: western European house mouse

characteristic: common name

text: 08F1_A gut from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut


text: public

text: western European house mouse

text: 131 gut from IR population

characteristic: description

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut


text: public

text: western European house mouse

text: 132 gut from IR population

text: Ahvaz, Iran

characteristic: geographical origin

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut


text: public

text: western European house mouse

text: 121 gut from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: M

text: gut


text: public

text: western European house mouse

text: 122 gut from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: gut

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: public

text: western European house mouse

text: 02FC_1 heart from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


text: public

text: western European house mouse

text: 05F1C1 heart from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

characteristic: sex

text: heart


characteristic: ENA-LAST-UPDATE

text: public

text: western European house mouse

text: 07F1C1 heart from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


characteristic: External Id

text: public

text: western European house mouse

text: 08F1_A heart from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


characteristic: INSDC center name

text: public

text: western European house mouse

text: 131 heart from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


characteristic: INSDC first public

text: public

text: western European house mouse

text: 132 heart from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


characteristic: INSDC last update

text: public

text: western European house mouse

text: 121 heart from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


text: public

characteristic: INSDC status

text: western European house mouse

text: B2C thyroid from MC population

text: Massif Central, France

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: thyroid


characteristic: ENA-FIRST-PUBLIC

text: public

text: western European house mouse

text: 122 heart from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: heart


text: public

text: western European house mouse

text: 02FC_1 kidney from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: kidney

characteristic: title


text: public

characteristic: SRA accession

text: western European house mouse

text: 05F1C1 kidney from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: kidney


text: public

characteristic: Submitter Id

text: western European house mouse

text: 07F1C1 kidney from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: kidney


text: public

text: western European house mouse

characteristic: common name

text: 08F1_A kidney from IR population

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: kidney


text: public

text: western European house mouse

text: 131 kidney from IR population

characteristic: description

text: Ahvaz, Iran

text: Mus musculus domesticus

text: Mus musculus domesticus

text: M

text: kidney