text: public

tag: Namespace:Department of Biochemistry University of Cambridge

text: ArrayExpress

characteristic: broker name

text: Protocols: 200 ml of cells were grown at 32C to a density of 1E7 cells/ml Cells were fixed by the addition of formaldehyde to a final concentration of 1%, followed by incubation for 30 minutes at 32°C. The reaction was stopped with 10 ml of 2.5 M glycine. Cells were washed extensively in phosphate-buffered saline solution (PBS), resuspended in lysis buffer (50 mM HEPES pH 7.6, 140 mM NaCl, 1 mM EDTA, 0.1% Triton X-100, 1 mM PMSF, and 1× complete protease inhibitor cocktail [Roche]), and lysed with a Fastprep 24 bead-beater (5 cycles of 20 seconds at level 6.5). Chromatin was sheared by sonication with a Bioruptor (Diagenode; 6 cycles of 5 minutes with 30 seconds on / 30 seconds off at high intensity). The lysates were cleared by centrifugation at 20,000 g for 10 minutes, and adjusted to 500 μl at 6 μg/μl total protein, as determined by the BCA assay. 100 µl of magnetic beads (Pan Mouse IgG or protein G, Life Technologies) were blocked with bovine serum albumin (BSA), and coated with 5 µg of mouse monoclonal antibodies against methylated H3K9 (H3K9me2, Abcam ab1120) or with anti-histone H3 rabbit polyclonal antibodies (Abcam ab1791), respectively. The extracts were incubated overnight with the coated beads at 4°C with rotation. Next, the beads were washed twice with 0.8 ml of 50 mM HEPES pH 7.6, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, and 0.1% sodium deoxycholate, twice in the same buffer containing 500 mM NaCl, twice in 10 mM Tris-HCl pH 8, 250 mM LiCl, 1 mM EDTA, 0.5% NP-40, and 0.5% sodium deoxycholate, and once in Tris-EDTA solution. Elution and crosslinking reversal were performed by incubating the beads in 200 μl of 10 mM Tris-HCl pH 8, 1 mM EDTA, and 1% SDS overnight at 65°C. DNA was purified with Qiagen's a MinElute PCR purification kit (Qiagen) following the manufacturer’s protocol, and eluted in 10 μl. Libraries were prepared using the Next ChIP-seq Library Prep Master Mix Set for Illumina (New England Biolabs) according to the manufacturer’s instructions

characteristic: genotype

text: Schizosaccharomyces pombe 972h-

text: Schizosaccharomyces pombe 972h-

text: Schizosaccharomyces pombe 972h-


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Biochemistry University of Cambridge

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: Schizosaccharomyces pombe 972h-

characteristic: organism

text: Schizosaccharomyces pombe 972h-

text: Schizosaccharomyces pombe 972h-

characteristic: title

type: has member


text: public

text: ArrayExpress

text: wild type genotype

text: Schizosaccharomyces pombe 972h-

text: Schizosaccharomyces pombe 972h-

text: Schizosaccharomyces pombe 972h-


text: public

text: ArrayExpress

text: mmi1delta mei4delta

text: Schizosaccharomyces pombe 972h-

text: Schizosaccharomyces pombe 972h-

text: Schizosaccharomyces pombe 972h-


text: public

tag: Namespace:CENTRE FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF DENMARK

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: CENTRE FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF DENMARK

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: UNIMI

text: public

text: ITA

characteristic: collection date

text: Klebsiella pneumoniae KPC isolated in Varese (Italy)

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: sputum

text: respiratory tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

type: AMR curated data - CABBAGE

value: ertapenem

value: EUCAST

value: broth dilution

value: mg/L

value: resistant

value: Klebsiella pneumoniae

value: colistin

value: tobramycin

value: meropenem

value: cefotaxime

value: amikacin

value: imipenem

value: ampicillin

value: ceftazidime

value: ciprofloxacin

value: amoxicillin-clavulanic acid

value: levofloxacin

value: aztreonam


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIMI

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

text: bronchoalveolar lavage fluid

text: respiratory tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: EUCAST

value: susceptible

value: ertapenem

value: gentamicin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIMI

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

text: Blood

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: broth dilution

value: mg/L

value: resistant

value: Klebsiella pneumoniae


text: UNIMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

text: Blood

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: meropenem

value: cefotaxime

value: tobramycin

value: colistin


text: UNIMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITA

text: Klebsiella

text: Homo sapiens

text: Blood

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: ceftazidime

value: imipenem

value: ampicillin


text: UNIMI

text: public

text: ITA

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella

text: Homo sapiens

text: Blood

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: ciprofloxacin

value: amoxicillin-clavulanic acid

value: levofloxacin


text: UNIMI

text: public

text: ITA

characteristic: description

text: Klebsiella

text: Homo sapiens

text: Blood

text: blood

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

value: aztreonam

value: EUCAST

value: susceptible

value: amikacin

value: intermediate


text: UNIMI

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

text: bronchoalveolar lavage fluid

text: respiratory tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title

value: broth dilution

value: mg/L

value: gentamicin

value: resistant

value: ertapenem


text: UNIMI

text: public

text: ITA

characteristic: collection date

text: Klebsiella

text: Homo sapiens

text: bronchoalveolar lavage fluid

text: respiratory tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: Klebsiella pneumoniae

value: meropenem

value: cefotaxime

value: tobramycin

value: colistin


text: UNIMI

text: public

text: ITA

text: Klebsiella

characteristic: genus

text: Homo sapiens

text: bronchoalveolar lavage fluid

text: respiratory tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: amoxicillin-clavulanic acid

value: imipenem

value: ceftazidime

value: ciprofloxacin

value: ampicillin


text: UNIMI

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

characteristic: host

text: Blood

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: EUCAST

value: susceptible

value: aztreonam

value: amikacin

value: levofloxacin


text: UNIMI

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

characteristic: isolate

text: tracheal aspirate

text: respiratory tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: broth dilution

value: mg/L

value: resistant

value: gentamicin


characteristic: ENA-CHECKLIST

text: UNIMI

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

text: wound sample

text: skin or soft tissue

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: Klebsiella pneumoniae

value: ertapenem

value: cefotaxime

value: meropenem


characteristic: ENA-FIRST-PUBLIC

text: UNIMI

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

text: bronchoalveolar lavage fluid

text: respiratory tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: amoxicillin-clavulanic acid

value: tobramycin

value: colistin


characteristic: ENA-LAST-UPDATE

text: UNIMI

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

text: urine

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: imipenem

value: ceftazidime

value: ciprofloxacin


characteristic: External Id

text: UNIMI

text: public

text: ITA

text: Klebsiella

text: Homo sapiens

text: urine

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: EUCAST

value: aztreonam

value: susceptible

value: ampicillin


Coxiella burnetii Cb171_QLYMPHOMA

text: URMITE

characteristic: INSDC center name

text: public

text: Coxiella burnetii Cb171_QLYMPHOMA

text: Coxiella burnetii RSA 493

text: Coxiella burnetii RSA 493

characteristic: strain

text: B-cell lymphoma linked to Coxiella burnetii


text: UNIVERSITY OF EDINBURGH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF EDINBURGH

text: Kenyan isofemale line

text: Drosophila simulans

text: Drosophila simulans


text: UNIVERSITY OF EDINBURGH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Kenyan isofemale line. Inbred in the lab for 10 generations.

text: Drosophila simulans

text: Drosophila simulans


text: UNIVERSITY OF EDINBURGH

text: public

characteristic: Submitter Id

text: Madagascan isofemale line. Inbred in the lab for 10 generations.

characteristic: description

text: Drosophila simulans

text: Drosophila simulans


text: UNIVERSITY OF EDINBURGH

text: public

text: Madagascan isofemale line

text: Drosophila simulans

characteristic: organism

text: Drosophila simulans

characteristic: title


text: Genoscope CEA

text: public

tag: Namespace:Genoscope CEA

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolutionary processes involved in the adaptation of Saccharomyces cerevisiae to anthropic environments.


text: Genoscope CEA

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: HPA

text: public

text: Salmonella Typhi H58 08-04776

text: Salmonella enterica subsp. enterica serovar Typhi

text: Salmonella Typhi H58 08-04776


text: HPA

text: public

text: Salmonella Typhi H58 H125160566

text: Salmonella Typhi H58 H125160566


text: public

tag: Namespace:SAMSUNG MEDICAL CENTER SUNGKYUNKWAN UNIVERSITY SCH

text: human

text: Homo sapiens

text: Homo sapiens

text: Glioblastoma sample of 042


text: IRD

text: public

text: Coffee leaf sample RNAseq

text: Colombia, Chinchina, Naranjal experimental station

characteristic: geographic location (country and/or sea)

text: Coffea canephora

text: Coffea canephora

text: CCC1002 (BP42)

text: Fully expanded leaves

characteristic: tissue lib

text: Exp-leaf


characteristic: ENA-CHECKLIST

text: IRD

text: public

text: Coffee leaf sample RNAseq

text: Coffea canephora

text: Coffea canephora

text: CCC1004 (BP358)

text: Fully expanded leaves

text: Exp-leaf


characteristic: ENA-FIRST-PUBLIC

text: IRD

text: public

text: Coffee leaf sample RNAseq

text: Coffea eugenioides

text: Coffea eugenioides

text: Fully expanded leaves

text: Exp-leaf


characteristic: ENA-LAST-UPDATE

text: IRD

text: public

text: Coffee leaf sample RNAseq

text: Coffea canephora x Coffea eugenioides

text: Coffea canephora x Coffea eugenioides

text: Fully expanded leaves

text: Exp-leaf


characteristic: External Id

text: IRD

text: public

text: Coffee leaf sample RNAseq

text: Coffea eugenioides x Coffea canephora

text: Coffea eugenioides x Coffea canephora

text: Fully expanded leaves

text: Exp-leaf


pilot trip drosophila

text: CRG

characteristic: INSDC center name

text: public

text: pilot trip drosophila

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Pilot TRiP Drosophila


Acanthamoeba astronyxis

text: public

text: Acanthamoeba astronyxis

text: Acanthamoeba astronyxis

text: Acanthamoeba astronyxis

text: Acanthamoeba astronyxis genome assembly


Acanthamoeba culbertsoni

text: public

text: Acanthamoeba culbertsoni

text: Acanthamoeba culbertsoni

text: Acanthamoeba culbertsoni

text: Acanthamoeba culbertsoni genome assembly


Acanthamoeba lenticulata

text: public

text: Acanthamoeba lenticulata

text: Acanthamoeba lenticulata

text: Acanthamoeba lenticulata

text: Acanthamoeba lenticulata genome assembly


Acanthamoeba healyi

text: public

text: Acanthamoeba healyi

text: Acanthamoeba healyi

text: Acanthamoeba healyi

text: Acanthamoeba healyi genome assembly


Acanthamoeba palestinensis

text: public

text: Acanthamoeba palestinensis

text: Acanthamoeba palestinensis

text: Acanthamoeba palestinensis

text: Acanthamoeba palestinensis genome assembly


Acanthamoeba polyphaga

text: public

text: Acanthamoeba polyphaga

text: Acanthamoeba polyphaga

text: Acanthamoeba polyphaga

text: Acanthamoeba polyphaga genome assembly


Acanthamoeba royreba

text: public

text: Acanthamoeba royreba

text: Acanthamoeba royreba

text: Acanthamoeba royreba

text: Acanthamoeba royreba genome assembly


Acanthamoeba rhysodes

text: public

text: Acanthamoeba rhysodes

text: Acanthamoeba rhysodes

text: Acanthamoeba rhysodes

text: Acanthamoeba rhysodes genome assembly


Acanthamoeba divionensis

text: public

text: Acanthamoeba divionensis

text: Acanthamoeba divionensis

text: Acanthamoeba divionensis

text: Acanthamoeba divionensis genome assembly


Acanthamoeba lugdunensis

text: public

text: Acanthamoeba lugdunensis

text: Acanthamoeba lugdunensis

text: Acanthamoeba lugdunensis

text: Acanthamoeba lugdunensis genome assembly


Acanthamoeba quina

text: public

text: Acanthamoeba quina

text: Acanthamoeba quina

text: Acanthamoeba quina

text: Acanthamoeba quina genome assembly


Acanthamoeba mauritaniensis

text: public

text: Acanthamoeba mauritaniensis

text: Acanthamoeba mauritaniensis

text: Acanthamoeba mauritaniensis

text: Acanthamoeba mauritaniensis genome assembly


Acanthamoeba castellanii

text: public

text: Acanthamoeba castellanii

text: Acanthamoeba castellanii

text: Acanthamoeba castellanii

text: Acanthamoeba castellanii genome assembly


Acanthamoeba pearcei

text: public

text: Acanthamoeba pearcei

text: Acanthamoeba pearcei

text: Acanthamoeba pearcei

text: Acanthamoeba pearcei genome assembly


text: URMITE

text: public

text: Oceanobacillus oncorhynchi

text: Oceanobacillus oncorhynchi

characteristic: strain

text: Oceanobacillus oncorhynchi Oc5, genome sequence


characteristic: INSDC first public

text: public

tag: Namespace:MRC NATIONAL INSTITUTE FOR MEDICAL RESEARCH

characteristic: [RA] ng/ml

characteristic: [Shh] ug/ml

characteristic: [dox] ug/ml

characteristic: cell line

text: house mouse

characteristic: condition

text: Mus musculus

text: Mus musculus

characteristic: time point


text: MRC NATIONAL INSTITUTE FOR MEDICAL RESEARCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Embrapa Pecuaria Sudeste

text: public

tag: Namespace:Embrapa Pecuaria Sudeste

text: liver

characteristic: bio material

text: Bos indicus

text: Bos indicus


Pseudomonas fluorescens SRM1

characteristic: External Id

text: THE UNIVERSITY OF QUEENSLAND

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Pseudomonas fluorescens SRM1

tag: Namespace:THE UNIVERSITY OF QUEENSLAND

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: spoiled raw milk

characteristic: isolation source

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens SRM1


text: public

characteristic: [RA] ng/nl

characteristic: [Shh] ug/ml

characteristic: [dox] ug/ml

characteristic: cell line

text: house mouse

characteristic: common name

characteristic: condition

text: Mus musculus

text: Mus musculus

characteristic: time point


characteristic: ENA-CHECKLIST

text: UNIBE-IG

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: cattle

text: Bos taurus

characteristic: organism

text: Bos taurus

text: Congenital increased muscular tonus in a Holstein calf - how new molecular genetic techniques can shed light on previously undefinable rare diseases.

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University Medical Center Hamburg-Eppendorf

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: strain

text: template


text: University Medical Center Hamburg-Eppendorf

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: BALB/c

text: template


text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: CBA

text: template


text: UNIVERSITY OF ST ANDREWS

text: public

tag: Namespace:UNIVERSITY OF ST ANDREWS

text: coho salmon

text: Oncorhynchus kisutch

text: Oncorhynchus kisutch

text: Food restricted transgenic coho salmon


text: CRG

text: public

text: baker's yeast

text: wt

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CRG

text: public

text: baker's yeast

characteristic: common name

text: boi1∆ boi2∆

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CRG

text: public

text: baker's yeast

text: wt: s288c mixed with BFA264-15D for the backcrossing experiment

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CRG

text: public

text: baker's yeast

text: meiotic products of a boi1∆/BOI1 boi2∆/BOI2 SUP/+ zygote *not* carrying the boi1∆ and boi2∆ deletions

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CRG

text: public

text: baker's yeast

text: meiotic products of a boi1∆/BOI1 boi2∆/BOI2 SUP/+ zygote carrying the boi1∆ and boi2∆ deletions

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: DUKE-NUS

text: public

text: human

text: Colorectal tumour

text: Homo sapiens

text: Homo sapiens


text: DUKE-NUS

text: public

text: human

text: Liver met

text: Homo sapiens

text: Homo sapiens


text: DUKE-NUS

text: public

text: human

text: Matched normal

text: Homo sapiens

text: Homo sapiens


WT

text: public

text: WT

tag: Namespace:Key Lab of Systems Biology, Chinese Academy of Sciences

text: Norway rat

text: wide type

text: Rattus norvegicus

text: Rattus norvegicus

text: WT


text: Key Lab of Systems Biology, Chinese Academy of Sciences

text: public

text: Norway rat

text: Lep -/-

text: Rattus norvegicus

text: Rattus norvegicus


text: public

text: Norway rat

text: Lepr -/-

text: Rattus norvegicus

text: Rattus norvegicus


text: III

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: RC

characteristic: Localization

tag: Namespace:EMBL - Germany

characteristic: TNM Stage

unit: years

characteristic: age

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: M

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Potential of fecal microbiota for early stage detection of colorectal cancer

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: normal

characteristic: tissue type

text: Human tissue sample from host DE-001


text: III

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: F

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: normal

text: Human tissue sample from host DE-004

characteristic: title


text: III

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: RC

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: normal

characteristic: tissue type

text: Human tissue sample from host DE-008


text: IV

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Rectum

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: M

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: normal

text: Human tissue sample from host DE-009

characteristic: title


text: I

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: LC

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: normal

characteristic: tissue type

text: Human tissue sample from host DE-011


text: II

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sigma

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: M

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: normal

text: Human tissue sample from host DE-013

characteristic: title


text: IV

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: Sigma

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

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characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: tumor

characteristic: tissue type

text: Human tissue sample from host DE-045


text: III

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

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text: human-gut

text: M

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-046

characteristic: title


text: IV

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: Rectum

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

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characteristic: environment (material)

text: human-gut

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text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

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text: tumor

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text: Human tissue sample from host DE-047


text: III

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Rectum

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

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text: human-gut

text: M

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-049

characteristic: title


text: IV

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: RC

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

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text: tumor

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text: Human tissue sample from host DE-050


text: IV

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

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text: human-gut

text: F

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-051

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text: IV

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: Rectum

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: M

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: tumor

characteristic: tissue type

text: Human tissue sample from host DE-052


text: I

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: F

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-053

characteristic: title


text: II

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: Sigma

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: M

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: tumor

characteristic: tissue type

text: Human tissue sample from host DE-054


text: IV

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: M

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-056

characteristic: title


text: III

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: Sigma

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: tumor

characteristic: tissue type

text: Human tissue sample from host DE-057


text: IV

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: F

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-058

characteristic: title


text: II

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: RC

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: tumor

characteristic: tissue type

text: Human tissue sample from host DE-059


text: IV

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: M

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-060

characteristic: title


text: II

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: RC

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: tumor

characteristic: tissue type

text: Human tissue sample from host DE-061


text: III

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: M

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-062

characteristic: title


text: IV

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: RC

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: F

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: tumor

characteristic: tissue type

text: Human tissue sample from host DE-064


text: II

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: F

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-066

characteristic: title


text: II

characteristic: AJCC Stage

text: EMBL - Germany

text: public

text: RC

characteristic: bmi

characteristic: body product

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: M

characteristic: gender

text: Germany

characteristic: geographic location (country and/or sea,region)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: tumor

characteristic: tissue type

text: Human tissue sample from host DE-068


text: IV

characteristic: AJCC Stage

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RC

characteristic: Localization

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TNM Stage

characteristic: age

text: human

characteristic: common name

text: human-gut

text: F

text: Germany

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: tumor

text: Human tissue sample from host DE-069

characteristic: title


Mobilicoccus massiliensis SIT2

text: URMITE

text: public

text: Mobilicoccus massiliensis SIT2

text: Mobilicoccus sp. SIT2

text: Mobilicoccus sp. SIT2

characteristic: strain

text: Kwashiorkor gut microbiota


Halomonas salina B6

characteristic: ENA-CHECKLIST

text: URMITE

text: public

text: Halomonas salina B6

text: Culture of halophilic archaea and bacteria from human gut

characteristic: description

text: Halomonas salina

text: Halomonas salina

text: Halomonas salina B6 genome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UC DAVIS GENOME CENTER

text: public

tag: Namespace:UC DAVIS GENOME CENTER

text: Burkholderia gladioli

text: Burkholderia gladioli

text: Burkholderia gladioloi Strain UCD-UG_CHAPALOTE


characteristic: External Id

text: ILLUMINA, INC.

characteristic: INSDC center name

text: public

tag: Namespace:ILLUMINA, INC.

text: synthetic Enterobacteria phage phiX174.1f


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: rice

text: Oryza sativa

text: Oryza sativa


Enterobacter sp. Strain UCD-UG_FMILLET

text: UC DAVIS GENOME CENTER

text: public

characteristic: INSDC status

text: Enterobacter sp. Strain UCD-UG_FMILLET

text: Enterobacter sp. UCD-UG_FMILLET

text: Enterobacter sp. UCD-UG_FMILLET

text: Enterobacter sp. Strain UCD-UG_FMILLET


text: DUKE-NUS

text: public

characteristic: SRA accession

text: human

text: Patient's whole blood

text: Homo sapiens

text: Homo sapiens


text: DUKE-NUS

text: public

characteristic: Submitter Id

text: human

text: Fibroadenoma tumor tissue

text: Homo sapiens

text: Homo sapiens


text: DUKE-NUS

text: public

text: human

text: Benign phyllodes tumor

text: Homo sapiens

text: Homo sapiens


text: DUKE-NUS

text: public

text: human

text: Borderline phyllodes tumor

text: Homo sapiens

text: Homo sapiens


text: DUKE-NUS

text: public

text: human

text: Malignant phyllodes tumor

text: Homo sapiens

text: Homo sapiens


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: MLN

text: microRNAs in PCV2 subclinically infected and non infected pigs


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: tonsil