characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

text: This sample (TARA_N000002791) was collected during the Tara Oceans expedition (2009-2013) at station TARA_152 (latitudeN=43.7056, longitudeE=-16.8794) on date/time=2012-03-20T08:48:42, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 21-30 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.8-5 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_N000002792.

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: event label

text: tbd

characteristic: further details

text: marine metagenome

characteristic: organism

text: Tara Oceans expedition (2009-2013)

text: SV Tara

text: marine metagenome

text: TARA_20120320T0851Z_152_Combined-EVENTS_CAST_MB_X_(25 m)_PROT_NUC-RNA(100L)_W0.8-5_TARA_N000002791

characteristic: title


status: PUBLIC

unit: mg Chl/m3

tag: attribute

characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

unit: DD

unit: practical salinity unit

unit: m

text: This sample (TARA_N000002797) was collected during the Tara Oceans expedition (2009-2013) at station TARA_152 (latitudeN=43.7056, longitudeE=-16.8794) on date/time=2012-03-20T08:48:42, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 21-30 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (5-20 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_N000002788.

text: marine biome (ENVO:00000447)

text: water

text: tbd

characteristic: last update date

characteristic: latitude start

characteristic: longitude start

unit: µmol/L

characteristic: nitrate sensor

text: marine metagenome

unit: µmol/kg

characteristic: oxygen sensor

text: Tara Oceans expedition (2009-2013)

characteristic: project name

characteristic: protocol label

characteristic: sample collection device

text: This version can be used to provide data discovery services

characteristic: sample status

characteristic: sampling campaign

text: SV Tara

characteristic: sampling platform

characteristic: sampling station

text: marine metagenome

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

unit: ºC

characteristic: temperature

text: TARA_20120320T0851Z_152_Combined-EVENTS_CAST_MB_X_(25 m)_PROT_NUC-RNA(1L)_W5-20_TARA_N000002797


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

text: This sample (TARA_B100001788) was collected during the Tara Oceans expedition (2009-2013) at station TARA_153 (latitudeN=44.0497, longitudeE=-16.6034) on date/time=2012-03-24T08:13, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 23-27 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100001789.

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: event label

text: tbd

characteristic: further details

text: marine metagenome

characteristic: organism

text: Tara Oceans expedition (2009-2013)

text: SV Tara

text: marine metagenome

text: TARA_20120324T0813Z_153_EVENT_PUMP_P_X_(25 m)_BACT_NUC-RNA(10L-or-10min)_W0.22-3_TARA_B100001788

characteristic: title


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: This sample (TARA_N000002825) was collected during the Tara Oceans expedition (2009-2013) at station TARA_153 (latitudeN=44.0497, longitudeE=-16.6034) on date/time=2012-03-24T08:13, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 23-27 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.8-> micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_N000002826.

text: marine biome (ENVO:00000447)

text: water

text: tbd

characteristic: last update date

characteristic: latitude start

characteristic: longitude start

characteristic: nitrate sensor

text: marine metagenome

characteristic: oxygen sensor

text: Tara Oceans expedition (2009-2013)

characteristic: project name

characteristic: protocol label

characteristic: sample collection device

characteristic: sample status

characteristic: sampling campaign

text: SV Tara

characteristic: sampling platform

characteristic: sampling station

text: marine metagenome

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

characteristic: temperature

text: TARA_20120324T0813Z_153_EVENT_PUMP_P_X_(25 m)_PROT_NUC-RNA(100L)_W0.8->_TARA_N000002825


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

text: This sample (TARA_N000002821) was collected during the Tara Oceans expedition (2009-2013) at station TARA_153 (latitudeN=44.0497, longitudeE=-16.6034) on date/time=2012-03-24T08:13, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 23-27 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.8-5 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_N000002822.

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: event label

text: tbd

characteristic: further details

text: marine metagenome

characteristic: organism

text: Tara Oceans expedition (2009-2013)

text: SV Tara

text: marine metagenome

text: TARA_20120324T0813Z_153_EVENT_PUMP_P_X_(25 m)_PROT_NUC-RNA(100L)_W0.8-5_TARA_N000002821

characteristic: title


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: This sample (TARA_N000002817) was collected during the Tara Oceans expedition (2009-2013) at station TARA_153 (latitudeN=44.0497, longitudeE=-16.6034) on date/time=2012-03-24T08:13, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 23-27 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (5-20 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_N000002818.

text: marine biome (ENVO:00000447)

text: water

text: tbd

characteristic: last update date

characteristic: latitude start

characteristic: longitude start

characteristic: nitrate sensor

text: marine metagenome

characteristic: oxygen sensor

text: Tara Oceans expedition (2009-2013)

characteristic: project name

characteristic: protocol label

characteristic: sample collection device

characteristic: sample status

characteristic: sampling campaign

text: SV Tara

characteristic: sampling platform

characteristic: sampling station

text: marine metagenome

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

characteristic: temperature

text: TARA_20120324T0813Z_153_EVENT_PUMP_P_X_(25 m)_PROT_NUC-RNA(1L)_W5-20_TARA_N000002817


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

text: This sample (TARA_B100002033) was collected during the Tara Oceans expedition (2009-2013) at station TARA_153 (latitudeN=44.0342, longitudeE=-16.5455) on date/time=2012-03-08T22:44, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 90-108 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.22-3 micrometres), preserved on board with RNA-Later, and stored in liquid nitrogen for later detection of prokaryote nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_B100002034.

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: event label

text: tbd

characteristic: further details

text: marine metagenome

characteristic: organism

text: Tara Oceans expedition (2009-2013)

text: SV Tara

text: marine metagenome

text: TARA_20120324T1550Z_153_Combined-EVENTS_CAST_MB_X_(100 m)_BACT_NUC-RNA(10L-or-10min)_W0.22-3_TARA_B100002033

characteristic: title


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: This sample (TARA_N000002823) was collected during the Tara Oceans expedition (2009-2013) at station TARA_153 (latitudeN=44.0342, longitudeE=-16.5455) on date/time=2012-03-08T22:44, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 90-108 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.8-> micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_N000002824.

text: marine biome (ENVO:00000447)

text: water

text: tbd

characteristic: last update date

characteristic: latitude start

characteristic: longitude start

characteristic: nitrate sensor

text: marine metagenome

characteristic: oxygen sensor

text: Tara Oceans expedition (2009-2013)

characteristic: project name

characteristic: protocol label

characteristic: sample collection device

characteristic: sample status

characteristic: sampling campaign

text: SV Tara

characteristic: sampling platform

characteristic: sampling station

text: marine metagenome

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

characteristic: temperature

text: TARA_20120324T1550Z_153_Combined-EVENTS_CAST_MB_X_(100 m)_PROT_NUC-RNA(100L)_W0.8->_TARA_N000002823


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

text: This sample (TARA_N000002819) was collected during the Tara Oceans expedition (2009-2013) at station TARA_153 (latitudeN=44.0342, longitudeE=-16.5455) on date/time=2012-03-08T22:44, using a ROSETTE sampler with CTD (sbe9C) and 10 Niskin bottles. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was collected at a depth of 90-108 m, targeting a marine epipelagic mixed layer (ENVO:xxxxxxxxx) in the marine biome (ENVO:00000447). The sample was size-fractionated (0.8-5 micrometres), and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) nucleic acid sequences by pyrosequencing methods, and for later metagenomics/transcriptomics analysis. This sample has replicate sample(s): TARA_N000002820.

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: event label

text: tbd

characteristic: further details

text: marine metagenome

characteristic: organism

text: Tara Oceans expedition (2009-2013)

text: SV Tara

text: marine metagenome

text: TARA_20120324T1550Z_153_Combined-EVENTS_CAST_MB_X_(100 m)_PROT_NUC-RNA(100L)_W0.8-5_TARA_N000002819

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Stable resistance to metronidazole in a non-toxigenic Clostridium difficile strain was investigated both at genomic and proteomic level. Alterations in the metabolic pathway involving the pyruvate-ferredoxin oxidoreductase were found, suggesting that reduction of metronidazole, required for its activity, may be less efficient in this strain. Proteomic studies also showed a cellular response to the oxidative stress.

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: C. difficile strain stable-resistant to metronidazole


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

text: tbd

characteristic: Further Details

text: GSC

text: public

characteristic: Last Update Date

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

text: (search radius=5 degree) Marine Ecoregion:Adriatic Sea (MRGID:3314), Marine Ecoregion:Ionian Sea (MRGID:3351)

characteristic: Marine Region

characteristic: Nitrate Sensor

characteristic: Oxygen Sensor

text: Tara Oceans

characteristic: Project Name

characteristic: Protocol Label

characteristic: SRA accession

unit: psu

characteristic: Salinity Sensor

characteristic: Sample Collection Device

text: This version is NOT FINAL but can be used to provide data discovery services

characteristic: Sample Status

characteristic: Sampling Campaign

text: SV Tara

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Submitter Id

characteristic: Temperature

text: This sample (TARA_A100000556) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-11-18T13:52Z at station TARA_023 (latitudeN=42.1694, longitudeE=17.7179) from a deep chlorophyll maximum layer (ENVO:xxxxxxxx) at a depth of 48-52 m, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (20-180 micrometres) and preserved on board in liquid nitrogen for later phylogenetic/transcriptomic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.

characteristic: description

text: marine metagenome

text: marine metagenome

text: TARA_20091118T1352Z_023_EVENT_NET_N1+N2_D_(48-52m)_PROT_NUC-RNA(1L)_N20-180_TARA_A100000556


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: tbd

characteristic: Further Details

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Last Update Date

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

text: (search radius=5 degree) Marine Ecoregion:Levantine Sea (MRGID:21895)

characteristic: Marine Region

text: Tara Oceans

text: SV Tara

text: This sample (TARA_A100001645) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-12-15T13:05Z at station TARA_030 (latitudeN=33.9189, longitudeE=32.8532) from a deep chlorophyll maximum layer (ENVO:xxxxxxxx) at a depth of 68-72 m, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (20-180 micrometres) and preserved on board in liquid nitrogen for later phylogenetic/transcriptomic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.

text: marine metagenome

characteristic: organism

text: marine metagenome

text: TARA_20091215T1305Z_030_EVENT_NET_N1+N2_D_(68-72m)_PROT_NUC-RNA(1L)_N20-180_TARA_A100001645

characteristic: title


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

text: surface water (ENVO:00002042) layer

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

text: tbd

text: GSC

text: public

characteristic: Nitrate Sensor

characteristic: Oxygen Sensor

text: Tara Oceans

characteristic: Project Name

characteristic: Protocol Label

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Sample Collection Device

characteristic: Sample Status

characteristic: Sampling Campaign

text: SV Tara

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Submitter Id

characteristic: Temperature

text: This sample (TARA_A100001649) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-12-15T12:44Z at station TARA_030 (latitudeN=33.9184, longitudeE=32.86) from a surface water (ENVO:00002042) layer at a depth of 3-7 m, using a PLANKTON NET, TYPE=Bongo, MESH_Size_(�m)=180, MOUTH_Opening_(m^2)=0.258319, LENGTH_(m)=3. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (180-2000 micrometres) and preserved on board in liquid nitrogen for later phylogenetic/transcriptomic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.

characteristic: description

text: marine metagenome

text: marine metagenome

text: TARA_20091215T1244Z_030_EVENT_NET_N1+N2_S_(3-7m)_PROT_NUC-RNA(1L)_N180-2000_TARA_A100001649


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

text: surface water (ENVO:00002042) layer

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: tbd

characteristic: Further Details

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Last Update Date

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

characteristic: Marine Region

text: Tara Oceans

text: SV Tara

text: This sample (TARA_A100000550) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-11-18T12:56Z at station TARA_023 (latitudeN=42.1735, longitudeE=17.7175) from a surface water (ENVO:00002042) layer at a depth of 3-7 m, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (20-180 micrometres) and preserved on board in liquid nitrogen for later phylogenetic/transcriptomic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.

text: marine metagenome

characteristic: organism

text: marine metagenome

text: TARA_20091118T1256Z_023_EVENT_NET_N1+N2_S_(3-7m)_PROT_NUC-RNA(1L)_N20-180_TARA_A100000550

characteristic: title


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

text: surface water (ENVO:00002042) layer

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

text: tbd

text: GSC

text: public

characteristic: Nitrate Sensor

characteristic: Oxygen Sensor

text: Tara Oceans

characteristic: Project Name

characteristic: Protocol Label

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Sample Collection Device

characteristic: Sample Status

characteristic: Sampling Campaign

text: SV Tara

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Submitter Id

characteristic: Temperature

text: This sample (TARA_A100001648) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-12-15T12:44Z at station TARA_030 (latitudeN=33.9184, longitudeE=32.86) from a surface water (ENVO:00002042) layer at a depth of 3-7 m, using a PLANKTON NET, TYPE=Bongo, MESH_Size_(�m)=180, MOUTH_Opening_(m^2)=0.258319, LENGTH_(m)=3. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (180-2000 micrometres) and preserved on board in liquid nitrogen for later phylogenetic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.

characteristic: description

text: marine metagenome

text: marine metagenome

text: TARA_20091215T1244Z_030_EVENT_NET_N1+N2_S_(3-7m)_PROT_NUC-DNA(1L)_N180-2000_TARA_A100001648


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: tbd

characteristic: Further Details

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Last Update Date

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

characteristic: Marine Region

text: Tara Oceans

text: SV Tara

text: This sample (TARA_A100000557) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-11-18T16:32Z at station TARA_023 (latitudeN=42.1646, longitudeE=17.736) from a deep chlorophyll maximum layer (ENVO:xxxxxxxx) at a depth of 48-52 m, using a PLANKTON NET, TYPE=Bongo, MESH_Size_(�m)=180, MOUTH_Opening_(m^2)=0.258319, LENGTH_(m)=3. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (180-2000 micrometres) and preserved on board in liquid nitrogen for later phylogenetic/transcriptomic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.

text: marine metagenome

characteristic: organism

text: marine metagenome

text: TARA_20091118T1632Z_023_EVENT_NET_N1+N2_D_(48-52m)_PROT_NUC-RNA(1L)_N180-2000_TARA_A100000557

characteristic: title


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

text: surface water (ENVO:00002042) layer

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

text: tbd

text: GSC

text: public

characteristic: Nitrate Sensor

characteristic: Oxygen Sensor

text: Tara Oceans

characteristic: Project Name

characteristic: Protocol Label

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Sample Collection Device

characteristic: Sample Status

characteristic: Sampling Campaign

text: SV Tara

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Submitter Id

characteristic: Temperature

text: This sample (TARA_A100000549) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-11-18T10:17Z at station TARA_023 (latitudeN=42.1916, longitudeE=17.7175) from a surface water (ENVO:00002042) layer at a depth of 3-7 m, using a PLANKTON NET, TYPE=Bongo, MESH_Size_(�m)=180, MOUTH_Opening_(m^2)=0.258319, LENGTH_(m)=3. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (180-2000 micrometres) and preserved on board in liquid nitrogen for later phylogenetic/transcriptomic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.

characteristic: description

text: marine metagenome

text: marine metagenome

text: TARA_20091118T1017Z_023_EVENT_NET_N1+N2_S_(3-7m)_PROT_NUC-RNA(1L)_N180-2000_TARA_A100000549


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

text: surface water (ENVO:00002042) layer

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: tbd

characteristic: Further Details

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Last Update Date

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

characteristic: Marine Region

text: Tara Oceans

text: SV Tara

text: This sample (TARA_A100001647) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-12-15T11:13Z at station TARA_030 (latitudeN=33.9178, longitudeE=32.8849) from a surface water (ENVO:00002042) layer at a depth of 3-7 m, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (20-180 micrometres) and preserved on board in liquid nitrogen for later phylogenetic/transcriptomic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.

text: marine metagenome

characteristic: organism

text: marine metagenome

text: TARA_20091215T1113Z_030_EVENT_NET_N1+N2_S_(3-7m)_PROT_NUC-RNA(1L)_N20-180_TARA_A100001647

characteristic: title


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

text: tbd

text: GSC

text: public

characteristic: Nitrate Sensor

characteristic: Oxygen Sensor

text: Tara Oceans

characteristic: Project Name

characteristic: Protocol Label

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Sample Collection Device

text: This version is NOT FINAL but can be used to provide data discovery services

characteristic: Sample Status

characteristic: Sampling Campaign

text: SV Tara

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Submitter Id

characteristic: Temperature

text: This sample (TARA_A100001644) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-12-15T13:05Z at station TARA_030 (latitudeN=33.9189, longitudeE=32.8532) from a deep chlorophyll maximum layer (ENVO:xxxxxxxx) at a depth of 68-72 m, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (20-180 micrometres) and preserved on board in liquid nitrogen for later phylogenetic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.

characteristic: description

text: marine metagenome

text: marine metagenome

text: TARA_20091215T1305Z_030_EVENT_NET_N1+N2_D_(68-72m)_PROT_NUC-DNA(1L)_N20-180_TARA_A100001644


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: marine biome (ENVO:00000447)

characteristic: Environment (Biome)

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: tbd

characteristic: Further Details

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Last Update Date

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

text: (search radius=5 degree) Marine Ecoregion:Western Mediterranean (MRGID:21896), Marine Ecoregion:Alboran Sea (MRGID:3324)

characteristic: Marine Region

text: Tara Oceans

text: SV Tara

text: This sample (TARA_A200000179) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-09-23T18:32Z at station TARA_007 (latitudeN=37.0112, longitudeE=1.946) from a deep chlorophyll maximum layer (ENVO:xxxxxxxx) at a depth of 40-44 m, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (20-180 micrometres) and preserved on board in liquid nitrogen for later phylogenetic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods. This sample has replicate sample(s): TARA_A200000104.

text: marine metagenome

characteristic: organism

text: marine metagenome

text: TARA_20090923T1832Z_007_EVENT_NET_N1+N2_D_(40-44m)_PROT_NUC-DNA(1L)_N20-180_TARA_A200000179

characteristic: title


male

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Helsinki

text: public

characteristic: SRA accession

text: male

tag: Namespace:University of Helsinki

characteristic: Submitter Id

text: Glanville fritillary

characteristic: common name

text: Melitaea cinxia

text: Melitaea cinxia

text: male

type: has member


female

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: female

text: Glanville fritillary

text: Melitaea cinxia

text: Melitaea cinxia

text: female


10 full-sib pool

text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 10 full-sib pool

text: Glanville fritillary

text: Melitaea cinxia

text: Melitaea cinxia

text: 10 full-sib pool


100 full-sib pool

text: University of Helsinki

text: public

text: 100 full-sib pool

text: Glanville fritillary

text: Melitaea cinxia

text: Melitaea cinxia

text: 100 full-sib pool


text: PRI

text: public

text: S. pimpinelifolium CGN14498

characteristic: description

text: Solanum pimpinellifolium

text: Solanum pimpinellifolium

text: S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL601 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498

text: Solanum lycopersicum x Solanum pimpinellifolium


text: PRI

text: public

text: RIL603 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL608 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL609 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL610 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL611 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL612 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL614 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL615 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL618 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL619 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL622 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL623 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL624 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL625 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL626 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL630 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL631 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498

text: Solanum lycopersicum x Solanum pimpinellifolium


text: PRI

text: public

text: RIL634 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL639 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL643 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL644 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL646 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL648 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL649 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL651 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL653 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL654 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL656 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL658 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL659 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL660 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL665 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL666 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL667 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498

text: Solanum lycopersicum x Solanum pimpinellifolium


text: PRI

text: public

text: RIL668 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL669 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL670 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL674 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL675 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL676 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL678 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL679 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL682 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL684 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL685 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL688 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL691 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL692 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL693 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL694 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL696 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498

text: Solanum lycopersicum x Solanum pimpinellifolium


text: PRI

text: public

text: RIL697 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL701 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL702 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL705 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL706 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL707 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL710 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: PRI

text: public

text: RIL711 - S._lycopersicum_LA2463 x S. pimpinelifolium CGN14498


text: Genoscreen

text: public

characteristic: broker name

text: Campylobacter coli

text: Campylobacter coli


text: Genoscreen

text: public

text: Campylobacter jejuni

text: Campylobacter jejuni


text: MRCVU

text: public

text: black-legged tick

text: IDE8 cells transfected with TBEV wt replicon

text: Ixodes scapularis

text: Ixodes scapularis

text: Small RNAs


text: MRCVU

text: public

text: black-legged tick

text: IDE8 cells transfected with TBEV NS5 GAA mutant replicon

text: Ixodes scapularis

text: Ixodes scapularis

text: Small RNAs


text: MRCVU

text: public

text: black-legged tick

text: IDE8 cells transfected with LGTV replicon

text: Ixodes scapularis

text: Ixodes scapularis

text: Small RNAs


text: MRCVU

text: public

text: black-legged tick

text: IDE8 cells infected with LGTV

text: Ixodes scapularis

text: Ixodes scapularis

text: Small RNAs


text: MRCVU

text: public

text: black-legged tick

text: IDE8 cells transfected with eGFP specific dsRNA

text: Ixodes scapularis

text: Ixodes scapularis

text: Small RNAs


text: MRCVU

text: public

text: black-legged tick

text: IDE8 cells

text: Ixodes scapularis

text: Ixodes scapularis

text: Small RNAs


text: THE UNIVERSITY OF QUEENSLAND

text: public

tag: Namespace:THE UNIVERSITY OF QUEENSLAND

text: UQ-CMB

text: Genomic DNA

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Uropathogenic E. coli strain EC18


text: THE UNIVERSITY OF QUEENSLAND

text: public

text: UQ-CMB

text: Genomic DNA

text: Escherichia coli

text: Escherichia coli

text: Uropathogenic E. coli strain EC41


text: EBI

text: public

text: ArrayExpress

text: Protocols: T. brucei bloodstream form parasites (strain Lister 427, antigenic type MiTat 1.2, clone 221a) [Johnson and Cross, 1979] were cultured at 37 degrees C, 5% CO2, in HMI-11 medium. RNA interference of histone H1 was induced for 4 days in culture. Total RNA was extracted using TRIzol standard protocol. Ribosomal RNA was depleted with RiboMinus kit (Invitrogen). PolyA-containing RNA was purified using Dynabeads oligo-(dT) (Invitrogen) and cDNA was synthesized using random hexamers according to Complete RNA-seq Library System kit (NuGEN) instructions.

text: bloodstream slender form

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: fresh specimen

characteristic: specimen with known storage state

text: Lister 427


name: E-MTAB-1715_newsubmission:C1 clone

characteristic: ENA-CHECKLIST

text: EBI

text: public

text: E-MTAB-1715_newsubmission:C1 clone

text: ArrayExpress

text: bloodstream slender form

text: Trypanosoma brucei brucei

characteristic: organism

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: fresh specimen

text: Lister 427

text: C1 clone

characteristic: title


name: E-MTAB-1715_newsubmission:C2 clone

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EBI

text: public

characteristic: SRA accession

text: E-MTAB-1715_newsubmission:C2 clone

text: ArrayExpress

text: bloodstream slender form

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: fresh specimen

text: Lister 427

text: C2 clone


characteristic: External Id

text: public

tag: Namespace:UNESP - Univ Estadual Paulista, Institute of biosciences of Botucatu

characteristic: Submitter Id

text: pacu

characteristic: common name

text: Piaractus mesopotamicus

text: Piaractus mesopotamicus

text: Slow and fast muscle


text: UNESP - Univ Estadual Paulista, Institute of biosciences of Botucatu

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: pacu

text: Piaractus mesopotamicus

text: Piaractus mesopotamicus

text: Slow and fast muscle


Slow muscle3

text: public

characteristic: INSDC status

text: Slow muscle3

text: pacu

text: Piaractus mesopotamicus

text: Piaractus mesopotamicus

text: Slow and fast muscle


text: KAUST

text: public

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: isolation source

text: 33.8441 S 151.2789 W

characteristic: lat lon

text: Chromera velia CCMP2878

text: Chromera velia CCMP2878


characteristic: ENA-CHECKLIST

text: KAUST

text: public

text: Australia

text: coral animal

text: 33.8441 S 151.2789 W

text: Vitrella brassicaformis CCMP3155

text: Vitrella brassicaformis CCMP3155


text: public

text: pacu

text: Piaractus mesopotamicus

characteristic: organism

text: Piaractus mesopotamicus

text: Slow and fast skeletal muscle


Dmel

text: public

text: Dmel

text: fruit fly

text: A pooled population sample of D. melanogaster from South Africa

characteristic: description

text: Drosophila melanogaster

text: Drosophila melanogaster

text: D. melanogaster pooled population from South Africa

characteristic: title


Dsim

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Dsim

text: A pooled population sample of D. simulans from South Africa

text: Drosophila simulans

text: Drosophila simulans

text: D. simulans pooled population from South Africa


characteristic: External Id

text: public

characteristic: SRA accession

text: house mouse

text: Mouse 904 Spleen DNA

text: TRUE

characteristic: germline

text: Mus musculus

text: Mus musculus

text: Spleen

characteristic: tissue type

text: 904_Spleen DNA


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mouse 904 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 904_Tumour DNA


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mouse 907 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 907_Spleen DNA


text: public

text: house mouse

text: Mouse 907 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 907_Tumour DNA


text: public

text: house mouse

text: Mouse 918 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 918_Spleen DNA


text: public

text: house mouse

text: Mouse 918 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 918_Tumour DNA


text: public

text: house mouse

text: Mouse 919 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 919_Spleen DNA


text: public

text: house mouse

text: Mouse 919 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 919_Tumour DNA


text: public

text: house mouse

text: Mouse 1001 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 1001_Spleen DNA


text: public

text: house mouse

text: Mouse 1001 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 1001_Tumour DNA


text: public

text: house mouse

text: Mouse 1008 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 1008_Spleen DNA


text: public

text: house mouse

text: Mouse 1008 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 1008_Tumour DNA


text: public

text: house mouse

text: Mouse 1015 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 1015_Spleen DNA


text: public

text: house mouse

text: Mouse 1015 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 1015_Tumour DNA


text: public

text: house mouse

text: Mouse 1016 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 1016_Spleen DNA


text: public

text: house mouse

text: Mouse 1016 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 1016_Tumour DNA


text: public

text: house mouse

text: Mouse 1034 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 1034_Spleen DNA


text: public

text: house mouse

text: Mouse 1034 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 1034_Tumour DNA


text: public

text: house mouse

text: Mouse 1035 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 1035_Spleen DNA


text: public

text: house mouse

text: Mouse 1035 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 1035_Tumour DNA


text: public

text: house mouse

text: Mouse 1103 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 1103_Spleen DNA


text: public

text: house mouse

text: Mouse 1103 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 1103_Tumour DNA


text: public

text: house mouse

text: Mouse 1114 Spleen DNA

text: TRUE

text: Mus musculus

text: Mus musculus

text: Spleen

text: 1114_Spleen DNA


text: public

text: house mouse

text: Mouse 1114 Brca2 null, Trp53 null mammary tumour DNA

text: FALSE

text: Mus musculus

text: Mus musculus

text: Tumour

text: 1114_Tumour DNA


text: MACS-OVGU

text: public

text: Physarum polycephalum

text: Physarum polycephalum

text: Physarum single cells


text: MACS-OVGU

text: public

text: Physarum polycephalum

text: Physarum polycephalum

text: Physaum single cells


text: WUR

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Asian domestic


Wistar

text: public

text: Wistar

tag: Namespace:Key Lab of Systems Biology, Chinese Academy of Sciences

text: Norway rat

text: Wistar/Slac rat

text: Rattus norvegicus

text: Rattus norvegicus

text: Wistar


GK

text: Key Lab of Systems Biology, Chinese Academy of Sciences

text: public

text: GK

text: Norway rat

text: GK/Slac rat

text: Rattus norvegicus

text: Rattus norvegicus

text: GK


text: OX

text: public

characteristic: broker name

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

text: TUM

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: small RNA Seq


text: public

tag: Namespace:Research Institute of the McGill University Health Centre at the Montreal Children Hospital

text: Embryonic Stem Cells

characteristic: cell type

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: XY

characteristic: sex

text: RRBS ESC DNMT1 Tet


characteristic: ENA-FIRST-PUBLIC

text: Research Institute of the McGill University Health Centre at the Montreal Children Hospital

text: public

text: Embryonic Stem Cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: XY

text: RRBS ESC DNMT1 Tet

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LIV

text: public

text: liver fluke

text: Single fluke (Fasciola hepatica) of Shrewsbury strain, maintained by Ridgeways, UK

characteristic: description

text: Fasciola hepatica

text: Fasciola hepatica

text: Single fluke of Shrewsbury strain


text: LIV

text: public

characteristic: SRA accession

text: liver fluke

text: Pool of Fasciola hepatica fluke of the Shrewsbury strain maintained by Ridgeways, UK

text: Fasciola hepatica

text: Fasciola hepatica

text: Pool of Fasciola hepatica fluke


R19 RF

text: INRA JOUY-EN-JOSAS

characteristic: INSDC center name

text: public

text: R19 RF

tag: Namespace:INRA JOUY-EN-JOSAS

text: chicken

text: R+ animals,re-fed condition

text: Gallus gallus

text: Gallus gallus

text: R19 RF


T16 RF

text: INRA JOUY-EN-JOSAS

characteristic: INSDC first public

text: public

text: T16 RF

text: chicken

text: R+ animals, food re-fed condition

text: Gallus gallus

text: Gallus gallus

text: T16 RF


T18 RF

text: INRA JOUY-EN-JOSAS

text: public

text: T18 RF

characteristic: Submitter Id

text: chicken

text: R+ animals, food re-fed condition

text: Gallus gallus

text: Gallus gallus

text: T18 RF


T16 FD

text: INRA JOUY-EN-JOSAS

text: public

text: T16 FD

text: chicken

characteristic: common name

text: R+ animals, food deprivation condition

text: Gallus gallus

text: Gallus gallus

text: T16 FD


T18 FD

text: INRA JOUY-EN-JOSAS

characteristic: INSDC last update

text: public

text: T18 FD

text: chicken

text: R+ animals, food deprivation condition

text: Gallus gallus

text: Gallus gallus

text: T18 FD


R 19 FD

text: INRA JOUY-EN-JOSAS

text: public

characteristic: INSDC status

text: R 19 FD

text: chicken

text: R+ animals, food deprivation condition

text: Gallus gallus

text: Gallus gallus

text: R 19 FD


T05 FD

text: INRA JOUY-EN-JOSAS

text: public

text: T05 FD

text: chicken

text: R- animals, food deprivation condition

text: Gallus gallus

text: Gallus gallus

text: T05 FD


T09 FD

text: INRA JOUY-EN-JOSAS

text: public

text: T09 FD

text: chicken

text: R- animals, food deprivation condition

text: Gallus gallus

text: Gallus gallus

text: T09 FD


R06 FD

text: INRA JOUY-EN-JOSAS

text: public

text: R06 FD

text: chicken

text: R- animals, food deprivation condition

text: Gallus gallus

text: Gallus gallus

text: R06 FD


R06 RF

text: INRA JOUY-EN-JOSAS

text: public

text: R06 RF

text: chicken

text: R- animals,re-fed condition

text: Gallus gallus

text: Gallus gallus

text: R06 RF


T05 RF

text: INRA JOUY-EN-JOSAS

text: public

text: T05 RF

text: chicken

text: R- animals, food re-fed condition

text: Gallus gallus

text: Gallus gallus

text: T05 RF


T09 RF

text: INRA JOUY-EN-JOSAS

text: public

text: T09 RF

text: chicken

text: R- animals, food re-fed condition

text: Gallus gallus

text: Gallus gallus

text: T09 RF


99 78631

text: UNIVERSITY OF WARWICK

text: public

text: 99 78631

tag: Namespace:UNIVERSITY OF WARWICK

text: Genomic sequences of Salmonella enterica subsp. enterica serovar Paratyphi A strains


99 34821

text: UNIVERSITY OF WARWICK

text: public

text: 99 34821

text: Salmonella enterica subsp. enterica serovar Paratyphi A


text: UNIVERSITY OF WARWICK

text: public


text: UNIVERSITY OF WARWICK

text: public

text: FRA

text: Salmonella

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

type: AMR curated data - CABBAGE

value: tetracycline

value: EUCAST

value: disk diffusion

value: susceptible

value: Salmonella enterica

value: ciprofloxacin

value: chloramphenicol

value: nalidixic acid

value: spectinomycin

value: streptomycin

value: azithromycin

value: ampicillin

value: trimethoprim


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WARWICK

text: public

text: FRA

text: Salmonella

text: Homo sapiens

characteristic: organism


NCTC 83891

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WARWICK

text: public

text: NCTC 83891


NCTC 83871

text: UNIVERSITY OF WARWICK

text: public

text: NCTC 83871

characteristic: title


characteristic: ENA-LAST-UPDATE

text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate


text: Direct sequencing of the unamplified RNA was undertaken by Helic Biosciences, as described in Ozsolak & Milos (2011) doi: 10.1002/wrna.84

characteristic: DRS Sequencing

characteristic: External Id

text: DUNDEE

text: public

text: Dissections were carried out in L15 medium at 4°C. RNA was extracted in Trizol reagent (Invitrogen) by phase separation with chloroform, followed by precipitation with isopropanol and linear acrylamide. The RNA was washed in 70% ethanol, air-dried, resuspended in DEPCwater and frozen in liquid nitrogen. Total RNA was quantified and quality tested using the Agilent RNA assay (Agilent Bioanalyser pico RNA chip) by ARK-Genomics. Samples with a RIN number above 8.0 where selected. Notochord was removed by controlled trypsin digestion that aimed to keep the neural ventral midline.

characteristic: Microdissection

text: Neural Tube

text: Olivera-Martinez

text: chicken

text: DRS sequencing of Pre-Neutal Tube tissue microdissected from single chick embryos.

text: Gallus gallus

text: Gallus gallus

text: Male

characteristic: sex

text: Pre-neural Tube

text: PNT DRS Individual 1


text: DUNDEE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Neural Tube

text: Olivera-Martinez

text: chicken

characteristic: description

text: Gallus gallus

text: Gallus gallus

text: Male

text: Pre-neural Tube

text: PNT DRS Individual 2


text: DUNDEE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Neural Tube

text: Olivera-Martinez

text: chicken

characteristic: common name

text: Gallus gallus

text: Gallus gallus

text: Male

text: Pre-neural Tube

text: PNT DRS Individual 3


characteristic: ENA-CHECKLIST

text: CECAD, UNIVERSITY OF COLOGNE

text: public

tag: Namespace:CECAD, UNIVERSITY OF COLOGNE

text: fission yeast

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: strain


Salmonella enterica subsp. enterica1

characteristic: ENA-FIRST-PUBLIC

text: IZSLER-PR

text: public

text: Salmonella enterica subsp. enterica1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Manhattan

characteristic: serovar

text: Salmonella enterica subsp. enterica


characteristic: ENA-LAST-UPDATE

text: WUR

text: public

text: Complete genome sequence and characterization of Desulfitobacterium hafniense PCE-S

text: Desulfitobacterium hafniense

text: Desulfitobacterium hafniense

text: PCE-S

characteristic: title


characteristic: External Id

text: Walter and Eliza Hall Institute

text: public

tag: Namespace:Walter and Eliza Hall Institute

text: malaria parasite P. falciparum

text: DNA from nanovesicles (exosomes) from P. falciparum-infected human red blood cells

text: Plasmodium falciparum

text: Plasmodium falciparum

text: Pf vesicle paired-end reads


text: public

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Yes

text: wound

characteristic: isolation source host-associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Germany

text: Homo sapiens

text: Yes

text: swab anal

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Germany

text: Homo sapiens

text: Yes

text: stool

text: Enterococcus faecium

text: Enterococcus faecium


text: public

characteristic: Submitter Id

text: Germany

text: Homo sapiens

text: Yes

text: urine

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: public

text: Germany

text: Homo sapiens

text: Yes

text: swab

text: Enterococcus faecium

text: Enterococcus faecium


text: public

text: Germany

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF WARWICK

text: public

characteristic: description


characteristic: ENA-FIRST-PUBLIC

text: public

text: unknown

text: The Netherlands

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF WARWICK

text: public

text: DZA

text: Salmonella

characteristic: genus

text: Homo sapiens

characteristic: isolate

characteristic: organism


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF WARWICK

text: public

text: DZA

text: Salmonella

text: Homo sapiens

characteristic: title


CIS 370/671

characteristic: External Id

text: UNIVERSITY OF WARWICK

text: public

text: CIS 370/671


CIS 1131/721

text: UNIVERSITY OF WARWICK

text: public

text: CIS 1131/721


Banker Type61

text: UNIVERSITY OF WARWICK

text: public

text: Banker Type61


Banker Type51

text: UNIVERSITY OF WARWICK

text: public

text: Banker Type51


Banker Type41

text: UNIVERSITY OF WARWICK

text: public

text: Banker Type41


Banker Type31

text: UNIVERSITY OF WARWICK

text: public

text: Banker Type31


Banker Type11

text: UNIVERSITY OF WARWICK

text: public

text: Banker Type11


text: UNIVERSITY OF WARWICK

text: public

text: IRN

text: Salmonella

text: Homo sapiens

characteristic: host


text: UNIVERSITY OF WARWICK

text: public

text: BRA

text: Salmonella

text: Homo sapiens


text: UNIVERSITY OF WARWICK

text: public

text: MAR

text: Salmonella

text: Homo sapiens


text: UNIVERSITY OF WARWICK

text: public

text: KHM

text: Salmonella

text: Homo sapiens


text: UNIVERSITY OF WARWICK

text: public

text: KHM

text: Salmonella

text: Homo sapiens


text: UNIVERSITY OF WARWICK

text: public

text: FRA

text: Salmonella

text: Homo sapiens


text: UNIVERSITY OF WARWICK

text: public


text: UNIVERSITY OF WARWICK

text: public

text: FRA

text: Salmonella

text: Homo sapiens


text: UNIVERSITY OF WARWICK

text: public

text: SEN

text: Salmonella

text: Homo sapiens


A52 4281

text: UNIVERSITY OF WARWICK

text: public

text: A52 4281


text: UNIVERSITY OF WARWICK

text: public

text: FRA

text: Salmonella

text: Homo sapiens


text: UNIVERSITY OF WARWICK

text: public

text: VNM

text: Salmonella

text: Homo sapiens


99 72521

text: UNIVERSITY OF WARWICK

text: public

text: 99 72521


99 59001

text: UNIVERSITY OF WARWICK

text: public

text: 99 59001


99 102581

text: UNIVERSITY OF WARWICK

text: public

text: 99 102581


99 09151

text: UNIVERSITY OF WARWICK

text: public

text: 99 09151


99 071581

text: UNIVERSITY OF WARWICK

text: public

text: 99 071581


98 96521

text: UNIVERSITY OF WARWICK

text: public

text: 98 96521


98 28121

text: UNIVERSITY OF WARWICK

text: public

text: 98 28121


97 73581

text: UNIVERSITY OF WARWICK

text: public

text: 97 73581


97 18221

text: UNIVERSITY OF WARWICK

text: public

text: 97 18221


97 109131

text: UNIVERSITY OF WARWICK

text: public

text: 97 109131


97 06131

text: UNIVERSITY OF WARWICK

text: public

text: 97 06131


text: UNIVERSITY OF WARWICK

text: public


text: UNIVERSITY OF WARWICK

text: public

text: DNK

text: Salmonella

text: Homo sapiens


06 71531

text: UNIVERSITY OF WARWICK

text: public

text: 06 71531


06 64911

text: UNIVERSITY OF WARWICK

text: public

text: 06 64911


06 55681

text: UNIVERSITY OF WARWICK

text: public

text: 06 55681


text: EBI

text: public

text: ArrayExpress

characteristic: broker name

text: N. benthamiana plant 1, upper non-innoculated leaf tissue, CymRSV infected RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after NSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

characteristic: genotype

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

characteristic: organism part

text: Nicotiana benthamiana


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ArrayExpress

text: N. benthamiana plant 2, upper non-innoculated leaf tissue, CymRSV infected RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after FSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


text: EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-2733:CYMRSV_infected_Nbenth3_FDFSS

characteristic: Submitter Id

text: ArrayExpress

text: N. benthamiana plant 3, upper non-innoculated leaf tissue, CymRSV infected RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after FDFSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: E-MTAB-2733:CYMRSV_infected_Nbenth1_FDFSS

text: ArrayExpress

text: N. benthamiana plant 1, upper non-innoculated leaf tissue, CymRSV infected RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after FDFSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

characteristic: description

text: wild type genotype

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


text: EBI

text: public

text: ArrayExpress

text: N. benthamiana plant 2, upper non-innoculated leaf tissue, CymRSV infected RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after NSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

text: Nicotiana benthamiana

characteristic: organism

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


characteristic: ENA-LAST-UPDATE

text: EBI

text: public

text: ArrayExpress

text: N. benthamiana plant 3, upper non-innoculated leaf tissue, CymRSV infected RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after FSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


text: EBI

text: public

text: adult

characteristic: age

text: ArrayExpress

text: C. elegans N2 strain adult worms RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after FDFSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

characteristic: strain

characteristic: title


characteristic: External Id

text: EBI

text: public

text: E-MTAB-2733:CYMRSV_infected_Nbenth2_FDFSS

text: ArrayExpress

characteristic: broker name

text: N. benthamiana plant 2, upper non-innoculated leaf tissue, CymRSV infected RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after FDFSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


text: EBI

text: public

text: adult

text: ArrayExpress

text: C. elegans N2 strain adult worms RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after NSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

characteristic: genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: N. benthamiana plant 3, upper non-innoculated leaf tissue, CymRSV infected RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after NSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


text: EBI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: N. benthamiana plant 1, upper non-innoculated leaf tissue, CymRSV infected RNA sample. Small RNA libraries were generated by Illumina TruSeq v2 after FSS treatment Protocols: Total RNA was extracted from N. benthamiana tissue based on the White and Kaper protocol (/White, J.L., and Kaper, J.M. (1989). A simple method for detection of viral satellite RNAs in small plant tissue samples. J. Virol. Methods 23, 83 to 93). Total RNA from the all other organisms (A. thaliana, M. musculus, C. elegans, D. melanogaster) were extracted by TRIzol reagent (Life Technolgies). To make the small RNA libraries, this total RNA was used directly for Illumina TruSeq small RNA cloning protocol (RS-200-9002DOC) (NSS= non size selected). Or was subject to this protocol after small RNA size selection, by extraction of the 18-30nt band from a denaturing (formamide) polyacrylamide gel (FSS) or after small RNA size selection by extraction of the 18-30nt band from a fully denaturing formaldehyde polyacrylamide gel (FDFSS - described in detail by Harris et al,. in prep).

text: wild type genotype

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


06 44181

text: UNIVERSITY OF WARWICK

text: public

characteristic: INSDC status

text: 06 44181

characteristic: Submitter Id

text: Genomic sequences of Salmonella enterica subsp. enterica serovar Paratyphi A strains


06 26331

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WARWICK

text: public

text: 06 26331

text: Salmonella enterica subsp. enterica serovar Paratyphi A


06 12461

text: UNIVERSITY OF WARWICK

text: public

text: 06 12461

characteristic: description

characteristic: organism


isolate-A

characteristic: ENA-LAST-UPDATE

text: NUS

text: public

text: isolate-A

text: Singapore

characteristic: geographic location (country and/or sea)

text: human

characteristic: host

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: mTB,sg


isolate-B

characteristic: External Id

text: NUS

text: public

text: isolate-B

text: Singapore

text: human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: mTB,sg

characteristic: title


isolate-C

text: NUS

text: public

text: isolate-C

text: Singapore

text: human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: mTB,sg


isolate-D

text: NUS

text: public

text: isolate-D

text: Singapore

text: human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: mTB,sg


isolate-E

text: NUS

text: public

text: isolate-E

text: Singapore

text: human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: mTB,sg


isolate-K

text: NUS

text: public

text: isolate-K

text: Singapore

text: human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: mTB,sg


06 06101

text: UNIVERSITY OF WARWICK

text: public

text: 06 06101


05 74651

text: UNIVERSITY OF WARWICK

text: public

text: 05 74651


05 67921

text: UNIVERSITY OF WARWICK

text: public

text: 05 67921


05 67211

text: UNIVERSITY OF WARWICK

text: public

text: 05 67211


Uninfected RBCs Vesicles Replicate 1

text: Bio21 Institute

text: public

text: Uninfected RBCs Vesicles Replicate 1

tag: Namespace:Bio21 Institute

text: Uninfected

characteristic: Treatment

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Exosomes from P.fal iRBC and vesicles from uRBCs


Uninfected RBCs Vesicles Replicate 2

text: Bio21 Institute

characteristic: INSDC center name

text: public

text: Uninfected RBCs Vesicles Replicate 2

text: Uninfected

text: human

text: Homo sapiens

text: Homo sapiens


Uninfected RBCs Vesicles Replicate 3

text: Bio21 Institute

characteristic: INSDC first public

text: public

text: Uninfected RBCs Vesicles Replicate 3

text: Uninfected

text: human

text: Homo sapiens

text: Homo sapiens


Infected RBC Exosomes Replicate 1

text: Bio21 Institute

characteristic: INSDC last update

text: public

text: Infected RBC Exosomes Replicate 1

text: Infected

text: human

text: Homo sapiens

text: Homo sapiens


Infected RBC Exosomes Replicate 2

text: Bio21 Institute

text: public

characteristic: SRA accession

text: Infected RBC Exosomes Replicate 2

text: Infected

text: human

text: Homo sapiens

text: Homo sapiens


Infected RBC Exosomes Replicate 3

text: Bio21 Institute

text: public

characteristic: INSDC status

text: Infected RBC Exosomes Replicate 3

text: Infected

text: human

text: Homo sapiens

text: Homo sapiens


05 53041

text: UNIVERSITY OF WARWICK

text: public

text: 05 53041

characteristic: Submitter Id


05 4731

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WARWICK

text: public

text: 05 4731


05 37841

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WARWICK

text: public

text: 05 37841


05 02081

text: UNIVERSITY OF WARWICK

text: public

text: 05 02081

characteristic: description


text: public

text: Germany

text: Homo sapiens

text: Yes

text: swab anal

characteristic: isolation source host-associated

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


04 91761

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF WARWICK

text: public

text: 04 91761


04 65001

text: UNIVERSITY OF WARWICK

text: public

text: 04 65001


04 60311

text: UNIVERSITY OF WARWICK

text: public

text: 04 60311


04 35881

text: UNIVERSITY OF WARWICK

text: public

text: 04 35881


04 25891

text: UNIVERSITY OF WARWICK

text: public

text: 04 25891


04 04061

text: UNIVERSITY OF WARWICK

text: public

text: 04 04061


03 96041

text: UNIVERSITY OF WARWICK

text: public

text: 03 96041


03 70011

text: UNIVERSITY OF WARWICK

text: public

text: 03 70011


02 82921

text: UNIVERSITY OF WARWICK

text: public

text: 02 82921


02 42821

text: UNIVERSITY OF WARWICK

text: public

text: 02 42821


02 19601

text: UNIVERSITY OF WARWICK

text: public

text: 02 19601


02 13831

text: UNIVERSITY OF WARWICK

text: public

text: 02 13831


01 88771

text: UNIVERSITY OF WARWICK

text: public

text: 01 88771


01 85521

text: UNIVERSITY OF WARWICK

text: public

text: 01 85521


01 70571

text: UNIVERSITY OF WARWICK

text: public

text: 01 70571


01 69791

text: UNIVERSITY OF WARWICK

text: public

text: 01 69791


01 57661

text: UNIVERSITY OF WARWICK

text: public

text: 01 57661


01 47491

text: UNIVERSITY OF WARWICK

text: public

text: 01 47491


01 18521

text: UNIVERSITY OF WARWICK

text: public

text: 01 18521


00 67351

text: UNIVERSITY OF WARWICK

text: public

text: 00 67351


00 67121

text: UNIVERSITY OF WARWICK

text: public

text: 00 67121


00 60531

text: UNIVERSITY OF WARWICK

text: public

text: 00 60531


00 58511

text: UNIVERSITY OF WARWICK

text: public

text: 00 58511


00 35131

text: UNIVERSITY OF WARWICK

text: public

text: 00 35131


00 20461

text: UNIVERSITY OF WARWICK

text: public

text: 00 20461


text: AZ

text: public

text: MycCaP cells + 0.1% DMSO (overnight)

characteristic: TREATMENT

text: house mouse

text: MycCaP cells + 0.1% DMSO (overnight)

text: Mus musculus

text: Mus musculus

text: PIM Kinase Inhibitor AZD1208 Treated Mouse Sample


characteristic: External Id

text: AZ

text: public

text: MycCaP cells + AZD1208 at 1uM in 0.1% DMSO (overnight)

text: house mouse

text: Mus musculus

text: Mus musculus


text: AZ

text: public

text: MycCaP xenograft treated with vehicle (once daily for 21 days)

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: title


text: AZ

text: public

text: MycCaP xenograft treated with AZD1208 at 45mg/kg (once daily for 21 days)

text: house mouse

text: Mus musculus

text: Mus musculus


text: EBI

text: public

text: E-MTAB-2700:iCLIP_GFP_HIV_IIIB_CTR_Hs_NNNCCACNN_20111026_LUe44_2

text: ArrayExpress

characteristic: broker name

text: Protocols: CEM-SS T cell lines were grown in RPMI media supplemented with foetal bovine serum and Pen/Strept. HIV-1 viruses were produced from CEM-SS T cell lines by infecting cells with delta Vif IIIB strain HIV-1. HIV-1 viruses produced from CEM-SS T cell lines over expressing proteins of interest were concentrated and purified by ultracentrfugation through a sucrose gradient. Producer cells were washed throughly. Viruses or cells were then ressuspended in PBS and subjected to UV-C irradiation. Cells or viruses were ressuspended in 1mL of lysis buffer (50mM Tris-HCL, pH 7.4; 100mM NaCl; 1% NP-40; 0.1% SDS; 0.5% Sodium deoxycholate and protease inhibitor) and sonicated. 0.04ng of RNase A were added to the samples. RNAs cross-linked to proteins were extracted by immunoprecipitation of the proteins of interest iCLIP protocol was followed to isolate RNA bound to proteins of interest and amplify cDNA library. Proteins of interest were immunoprecipitated using anti-T7 or anti-GFP antibodies.. In order to differentiate between identical reads generated by PCR or distinct reads that were immunoprecipitated but that have the same sequence and length , we inserted 2 random nuclotides 5 prime of the barcode and 3 random nucleotides 3 prime of the barcode on each of the primers used to generate cDNA. Reads that have the same random nucleotides were judged to be artifacts from the PCR. This approach has been described in detail in Konig, et al, (2010): iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution", Nat Struct Mol Biol 17:909-915.. The final products were obtained by PCR with Illumina pair-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3

text: GFP packaging

characteristic: genotype

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

characteristic: specimen with known storage state

text: IIIB delta Vif

characteristic: strain


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-2700:iCLIP_T7_A3F_HIV_IIIB_packaged_protein_Hs_NNNGGTCNN_20111026_LUe43_4

text: ArrayExpress

text: T7-A3F packaging

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif


text: EBI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-2700:iCLIP_T7-GFP_HIV1-strainIIIB_negativecontrol_Hs_NNNTGGCNN_20110811_LUe35_4

characteristic: Submitter Id

text: ArrayExpress

text: T7-GFP packaging

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: E-MTAB-2700:iCLIP_T7-A3G_HIV1-strainIIIB_packagedproteininvirions_Hs_NNNCCACNN_20110811_LUe35_5

text: ArrayExpress

characteristic: description

text: T7-A3G packaging

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif


characteristic: ENA-LAST-UPDATE

text: EBI

text: public

text: E-MTAB-2700:iCLIP_T7_GFP_HIV_IIIB_CTR_Hs_NNNTTGTNN_20111026_LUe43_2

text: ArrayExpress

text: T7-GFP packaging

text: Human immunodeficiency virus

characteristic: organism

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif


characteristic: External Id

text: EBI

text: public

text: E-MTAB-2700:iCLIP_GFP-A3G_HIV1-strainIIIB_packagedproteininvirions_Hs_NNNGGTCNN_20110811_LUe35_2

text: ArrayExpress

text: GFP-A3G packaging

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif


text: EBI

text: public

text: E-MTAB-2700:iCLIP_T7_A3G_HIV_IIIB_packaged_protein_Hs_NNNTGGCNN_20111026_LUe43_3

text: ArrayExpress

text: T7-A3G packaging

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif

characteristic: title


text: EBI

text: public

text: E-MTAB-2700:iCLIP_GFP_A3G_HIV_IIIB_packaged_protein_Hs_NNNAATANN_20111026_LUe44_3

text: ArrayExpress

characteristic: broker name

text: GFP-A3G packaging

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif


text: EBI

text: public

text: E-MTAB-2700:iCLIP_GFP_A3F_HIV_IIIB_packaged_protein_Hs_NNNTTAANN_20111026_LUe44_4

text: ArrayExpress

text: GFP-A3F packaging

characteristic: genotype

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif


text: EBI

text: public

text: E-MTAB-2700:iCLIP_GFP-A3F_HIV1-strainIIIB_packagedproteininvirions_Hs_NNNAATANN_20110811_LUe35_3

text: ArrayExpress

text: GFP-A3F packaging

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

characteristic: specimen with known storage state

text: IIIB delta Vif


text: EBI

text: public

text: E-MTAB-2700:iCLIP_T7-A3F_HIV1-strainIIIB_packagedproteininvirions_Hs_NNNTTAANN_20110811_LUe35_6

text: ArrayExpress

text: T7-A3F packaging

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif

characteristic: strain


text: EBI

characteristic: INSDC center name

text: public

text: E-MTAB-2700:iCLIP_GFP_HIV1-strainIIIB_negativecontrol_Hs_NNNGGCGNN_20110811_LUe35_1

text: ArrayExpress

text: GFP packaging

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: Human immunodeficiency virus

text: fresh specimen

text: IIIB delta Vif


NRRL B-1299 1

text: LISBP

characteristic: INSDC first public

text: public

text: NRRL B-1299 1

text: Leuconostoc citreum

text: Leuconostoc citreum

text: Genome sequence of NRRL B-1299 strain


NRRL B-1299 sequence 2

text: LISBP

characteristic: INSDC last update

text: public

text: NRRL B-1299 sequence 2

text: Leuconostoc citreum

text: Leuconostoc citreum

text: Genome sequence of NRRL B-1299


text: University of Sao Paulo

text: public

characteristic: INSDC status

tag: Namespace:University of Sao Paulo

text: Longissimus dorsi muscle

text: Bos indicus

text: Bos indicus

text: male

characteristic: sex


text: Walter and Eliza Hall Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: P. falciparum 3D7 used for comparison to calculate copy number variation

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Control P. falciparum 3D7 sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: BGI

text: public

text: Rubus hybrid cultivar

text: Rubus hybrid cultivar

text: Total RNA samples were isolated from ripening fruits to characterize the Rubus sp. transcriptome and enhance sequence coverage


NRRL B-742 genome

characteristic: ENA-LAST-UPDATE

text: LISBP

text: public

text: NRRL B-742 genome

text: Leuconostoc citreum

text: Leuconostoc citreum

text: Genome sequence of NRRL B-742 strain


NRRL B-742 plasmid

text: LISBP

text: public

text: NRRL B-742 plasmid

text: Leuconostoc citreum

characteristic: organism

text: Leuconostoc citreum

text: Plasmid sequence of NRRL B-742 strain


NRRL B-742

characteristic: External Id

text: LISBP

text: public

text: NRRL B-742

text: Leuconostoc citreum

text: Leuconostoc citreum

text: Genome sequence of NRRL B-742 strain


text: HPA

text: public

text: Mycobacterium abscessus

text: Mycobacterium abscessus

characteristic: title


text: MPI-EVA

text: public

text: human

characteristic: common name

text: Genomic DNA from a male individual from near Ust'-Ishim, Russia

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: UstIshim


text: INSTITUT PASTEUR

text: public

text: This isolate has been sequenced by Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate