characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: European Molecular Biology Laboratory

text: public

text: E-MTAB-3798:L15_Dvir_Mef2-DRC4-10-14h-IP-59-3

text: 10 to 14h

text: ArrayExpress

text: Protocols: Wildtype Drosophila virilis (white eye mutation line) flies were grown in population cages at 25 degr. Staged populations of embryos were collected and aged at 25 degrees till the required stage of development is reached. Two independent collections were performed for each timepoint. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 485ul of 37% Formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. A small number of embryos from each collections was set aside to stage each collection. Between 30 and 70 ug of chromatin was brought to RIPA conditions (140mM NaCl / 10mM Tris-HCl pH8,0 / 1mM EDTA / 1% TritonX100 / 0,1% SDS / 0,1% sodium deoxycholate, 1mM PMSF, 1ul Leupeptin/Pepstain and 1 ul Aprotinin). For precipitation, 3ul Dvir-anti Mef2 (DRE5 or DRC4) antibody was added to each aliquot and incubated overnight at 4 degres on a rotating shaker. For each precipitation, 20 or 25 ul of 50% Protein A Sepharose (PAS) suspension were washed once with 1mL RIPA buffer + 1mg/ml BSA for blocking. In the morning, The antibody/antigen complexes were precipitated with 20 or 25 ul protein A sepharose at 4 degres for 3 hrs and washed 1x with RIPA buffer, 3x with RIPA buffer with increase NaCl (500 mM), 1x in 250mM LiCl / 10mM Tris-HCl pH 8,0 / 1mM EDTA / 0,5% NP-40 / 0,5% sodium deoxycholate and 2x in TE. The DNA was eluted after protease digest and RNAase treatment by incubation at 65 degr overnight and phenol chloroform extracted. ~1g of embryos of early time points (or ~0.5 from later time points) were thawn quickly and resuspended in 15ml ice-cold PBS/Triton + protease inhibitors. Dounce homogenization 20x with loose pestle on ice followed by centrifugation at 400g for 1min at 4 degrees and transfer SN to fresh tube. Centrifuge SN at 1100g for 10 min at 4 degrees and discard SN. Resuspend pellet in 15 ml ice-cold Cell lysis buffer + protease inhibitor Dounce 20x with tight pestle on ice. Transfer two equal aliquots into 15 ml falcon tubes. Centrifuge at 2000g for 4min at 4 degrees to pellet the nuclei. Discard SN. Resuspend pellet in 1ml of ice-cold Nulear-Lysis Buffer + proteas inhibitor and incubate for 20 min at RT Add 1ml ice-cold Nuclear Lysis Buffer + proteas inhibitors Sonicate using Bioruptor in 15 ml faclon tubes with a max of 2 ml in them for 18 cycles with 30 seconds ON / 30 seconds OFF. Transfer to 1.5 ml tubes and centrifuge at 14000 rpm for 10 min at 4 degrees Take SN=chromatin and make aliquots of 400 ul and flash freeze in liquid nitrogen and store at -80 degrees. Cell lysis buffer: 5mM Hepes pH 8, 85mM KCl, 0.5% NP40 + protease inhibitors Nuclear lysis buffer: 50mM Hepes pH 8, 10mM EDTA Na2, 0.5% N-Laurylsarkosin + protease inhibitors Solexa libraries were prepared according to manufacturers recommendations with small modifications. In short, 1-10ng of IP-purified, RNase treated, and reverse cross-linked genomic DNA was end-repaired and terminal adenosine residues were added using the NEBNext reagents. Indexed adapters (in house) were ligated, after which the material was size selected at ~230-250 bp (size equals sheered chromatin fragments plus adapters) on a 2% GelGreen (Biotium) stained agarose gel using SafeXtractor-100 gel extractors (5Prime) under blue light. PCR amplification was performed using PE1.0 and PE2.0 primers (Illumina) for 14 cycles for Input samples and 16 cycles for IP-ed samples using the Phusion High-Fidelity PCR Kit (Finnzyme). The PCR-amplified library was purified on a 2% agarose gel, avoiding unincorporated primers and primer-self-ligation products. Library quality was assessed on a Bioanalyzer 2100 system (Agilent).

text: stage 12 to 13

characteristic: developmental stage

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: European Molecular Biology Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3797:poolA_DNase_28_1_14_X_dvir25_30U

tag: Namespace:European Molecular Biology Laboratory

characteristic: Submitter Id

text: 2 to 5

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Protocols: Wildtype Drosophila virilis (white eye mutation line) flies were grown in population cages at 25 degr. Staged populations of embryos were collected and aged at 25 degrees till the required stage of development is reached. Two independent collections were performed for each timepoint. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 485ul of 37% Formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. A small number of embryos from each collections was set aside to stage each collection. 1g of frozen embryos were dounce-homogenized, 20 times with a loose pestle and 10 times with a tight pestle, in 10 ml of chilled HB buffer (15 mM Tris-HCl (pH 7.4), 0.34 M sucrose, 15 mM NaCl, 60 mM KCl, 0.2 mM EDTA and 0.2 mM EGTA) on ice. The lysate was filtered through 2 layers of Miracloth and spun at 3,500g for 10 min to pellet the nuclei. The nuclei were then washed in 10 ml of chilled HB buffer, spun at 3,500g for 10 min and resuspended in 3 ml of PBTB buffer (5% (wt/vol) BSA, 0.1% (vol/vol) Triton X-100 in PBS). The nuclei were dissociated by passing them ten times through a 20-G needle and then ten times through a 22-G needle using a 5-ml syringe, and filtered through a 20-micrometer Sefar Nitex membrane. The total number of nuclei was estimated by microscopy. DNase treatments were based closely on PMID: 23821440. Briefly, nuclei were permeabilised for 30min at 4C in PBS with 0.1% Triton-X and 0.02% NP40Nuclei were spun down at 2000G and resuspended in R-buffer [7.5mM Tris pH8, 45mM NaCl, 30mM KCl, 6mM MgCl2, 1mM CaCl2). Nuclei [~20x10e6 per digest] were then digested in 500uL R-buffer at 37C for 3min in a range of concentrations of DNase enzyme (10, 20, 30 or 50 units). After three minutes, the reaction was stopped with 500uL Stop-buffer [50mM Tris, pH-8, 100mM NaCL, 0.1% SDS, 100mM EDTA pH-8]. Reactions were then heated at 55C for 2 hours with 25uL of ProteinaseK [25mg/mL] and 300microg of RNaseA. An additional 25uL of ProK was then added and the reaction incubated over night at 65C. Following this step, digested DNA was isolated using Qiagen isolation kits and run out on a 1% agarose gel to assess digestion levels (as in PMID: 23821440). Optimal digests were then fractionated using sucrose gradients as in PMID: 23821440 to generate 330uL fractions. Fracitons 2 and 3 were then pooled and tested for quality using qPCR for known control regions of open chromatin. The digests with the highest qPCR enrichment were selected for library preparation. 'Illumina libraries were prepared according to manufacturers recommendations with small modifications. In short, 3-10ng of RNase treated, and reverse cross-linked DNA from our DNase protocol was end-repaired and terminal adenosine residues were added using the NEBNext reagents. Modified versions of the Illumina PE adapters containing sample-specific molecular barcodes were ligated, after which the material was size selected with a mean of ~300 bp (size equals sheered chromatin fragments plus adapters) using AMPure beads. PCR amplification was performed using PE1.0 and PE2.0 primers (Illumina) for 16 cycles according to manufacturer''s recommendation using the Phusion High-Fidelity PCR Kit (Finnzyme). The PCR-amplified library was purified using AMPure beads.'

characteristic: description

text: stage 5 to 7

text: egg laying

characteristic: initial time point

text: Drosophila virilis

characteristic: organism

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

characteristic: sex

text: white eye mutation line, w[-]

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: European Molecular Biology Laboratory

text: public

text: E-MTAB-3798:L15_Dvir_Mef2-DRC4-2-5h-Ip-70-1

text: 2 to 5h

text: ArrayExpress

text: stage 5 to 7

characteristic: developmental stage

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]

type: has member


characteristic: ENA-CHECKLIST

characteristic: External Id

text: European Molecular Biology Laboratory

characteristic: INSDC center name

text: public

text: E-MTAB-3797:poolB_DNase_13_1_14_X_dvir710_10U

text: 7 to 10

text: ArrayExpress

text: stage 10 to 11

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]


text: European Molecular Biology Laboratory

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3798:L15_Dvir_Tin-EJRI-2-5h-IP-72-1

text: 2 to 5h

text: ArrayExpress

text: Protocols: Wildtype Drosophila virilis (white eye mutation line) flies were grown in population cages at 25 degr. Staged populations of embryos were collected and aged at 25 degrees till the required stage of development is reached. Two independent collections were performed for each timepoint. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 485ul of 37% Formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. A small number of embryos from each collections was set aside to stage each collection. â30 ug of chromatin was brought to RIPA conditions (140mM NaCl / 10mM Tris-HCl pH8,0 / 1mM EDTA / 1% TritonX100 / 0,1% SDS / 0,1% sodium deoxycholate, 1mM PMSF, 1ul Leupeptin/Pepstain and 1 ul Aprotinin). For precipitation, 3ul Dvir-anti Tin (EJRI) antibody was added to each aliquot and incubated overnight at 4 degres on a rotating shaker. For each precipitation, 20 ul of 50% Protein A Sepharose (PAS) suspension were washed once with 1mL RIPA buffer + 1mg/ml BSA for blocking. In the morning, The antibody/antigen complexes were precipitated with 20 ul protein A sepharose at 4 degres for 3 hrs and washed 1x with RIPA buffer, 3x with RIPA buffer with increase NaCl (500 mM), 1x in 250mM LiCl / 10mM Tris-HCl pH 8,0 / 1mM EDTA / 0,5% NP-40 / 0,5% sodium deoxycholate and 2x in TE. The DNA was eluted after protease digest and RNAase treatment by incubation at 65 degr overnight and phenol chloroform extracted.â ~1g of embryos of early time points (or ~0.5 from later time points) were thawn quickly and resuspended in 15ml ice-cold PBS/Triton + protease inhibitors. Dounce homogenization 20x with loose pestle on ice followed by centrifugation at 400g for 1min at 4 degrees and transfer SN to fresh tube. Centrifuge SN at 1100g for 10 min at 4 degrees and discard SN. Resuspend pellet in 15 ml ice-cold Cell lysis buffer + protease inhibitor Dounce 20x with tight pestle on ice. Transfer two equal aliquots into 15 ml falcon tubes. Centrifuge at 2000g for 4min at 4 degrees to pellet the nuclei. Discard SN. Resuspend pellet in 1ml of ice-cold Nulear-Lysis Buffer + proteas inhibitor and incubate for 20 min at RT Add 1ml ice-cold Nuclear Lysis Buffer + proteas inhibitors Sonicate using Bioruptor in 15 ml faclon tubes with a max of 2 ml in them for 18 cycles with 30 seconds ON / 30 seconds OFF. Transfer to 1.5 ml tubes and centrifuge at 14000 rpm for 10 min at 4 degrees Take SN=chromatin and make aliquots of 400 ul and flash freeze in liquid nitrogen and store at -80 degrees. Cell lysis buffer: 5mM Hepes pH 8, 85mM KCl, 0.5% NP40 + protease inhibitors Nuclear lysis buffer: 50mM Hepes pH 8, 10mM EDTA Na2, 0.5% N-Laurylsarkosin + protease inhibitors Solexa libraries were prepared according to manufacturers recommendations with small modifications. In short, 1-10ng of IP-purified, RNase treated, and reverse cross-linked genomic DNA was end-repaired and terminal adenosine residues were added using the NEBNext reagents. Indexed adapters (in house) were ligated, after which the material was size selected at ~230-250 bp (size equals sheered chromatin fragments plus adapters) on a 2% GelGreen (Biotium) stained agarose gel using SafeXtractor-100 gel extractors (5Prime) under blue light. PCR amplification was performed using PE1.0 and PE2.0 primers (Illumina) for 14 cycles for Input samples and 16 cycles for IP-ed samples using the Phusion High-Fidelity PCR Kit (Finnzyme). The PCR-amplified library was purified on a 2% agarose gel, avoiding unincorporated primers and primer-self-ligation products. Library quality was assessed on a Bioanalyzer 2100 system (Agilent).

text: stage 5 to 7

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]


text: European Molecular Biology Laboratory

text: public

characteristic: SRA accession

text: E-MTAB-3797:poolB_DNase_22_11_13_X_dvir710_20U

characteristic: Submitter Id

text: 7 to 10

characteristic: age

text: ArrayExpress

text: stage 10 to 11

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]


text: European Molecular Biology Laboratory

text: public

text: E-MTAB-3798:L15_Dvir_Tin-EJRI-7-10h-IP-72-7

text: 7 to 10h

text: ArrayExpress

characteristic: broker name

characteristic: description

text: stage 10 to 11

text: egg laying

characteristic: initial time point

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]


text: European Molecular Biology Laboratory

text: public

text: E-MTAB-3798:L16_Dvir_Bap-EJSJ-7-10h-IP-75-9

text: 7 to 10h

text: ArrayExpress

text: Protocols: Wildtype Drosophila virilis (white eye mutation line) flies were grown in population cages at 25 degr. Staged populations of embryos were collected and aged at 25 degrees till the required stage of development is reached. Two independent collections were performed for each timepoint. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 485ul of 37% Formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. A small number of embryos from each collections was set aside to stage each collection. 30 ug of chromatin was brought to RIPA conditions (140mM NaCl / 10mM Tris-HCl pH8,0 / 1mM EDTA / 1% TritonX100 / 0,1% SDS / 0,1% sodium deoxycholate, 1mM PMSF, 1ul Leupeptin/Pepstain and 1 ul Aprotinin). For precipitation, 3ul Dvir-anti Bap (EJSJ) antibody was added to each aliquot and incubated overnight at 4 degres on a rotating shaker. For each precipitation, 15 ul of 50% Protein A Sepharose (PAS) suspension were washed once with 1mL RIPA buffer + 1mg/ml BSA for blocking. In the morning, The antibody/antigen complexes were precipitated with 15 ul protein A sepharose at 4 degres for 3 hrs and washed 1x with RIPA buffer, 3x with RIPA buffer with increase NaCl (500 mM), 1x in 250mM LiCl / 10mM Tris-HCl pH 8,0 / 1mM EDTA / 0,5% NP-40 / 0,5% sodium deoxycholate and 2x in TE. The DNA was eluted after protease digest and RNAase treatment by incubation at 65 degr overnight and phenol chloroform extracted. ~1g of embryos of early time points (or ~0.5 from later time points) were thawn quickly and resuspended in 15ml ice-cold PBS/Triton + protease inhibitors. Dounce homogenization 20x with loose pestle on ice followed by centrifugation at 400g for 1min at 4 degrees and transfer SN to fresh tube. Centrifuge SN at 1100g for 10 min at 4 degrees and discard SN. Resuspend pellet in 15 ml ice-cold Cell lysis buffer + protease inhibitor Dounce 20x with tight pestle on ice. Transfer two equal aliquots into 15 ml falcon tubes. Centrifuge at 2000g for 4min at 4 degrees to pellet the nuclei. Discard SN. Resuspend pellet in 1ml of ice-cold Nulear-Lysis Buffer + proteas inhibitor and incubate for 20 min at RT Add 1ml ice-cold Nuclear Lysis Buffer + proteas inhibitors Sonicate using Bioruptor in 15 ml faclon tubes with a max of 2 ml in them for 18 cycles with 30 seconds ON / 30 seconds OFF. Transfer to 1.5 ml tubes and centrifuge at 14000 rpm for 10 min at 4 degrees Take SN=chromatin and make aliquots of 400 ul and flash freeze in liquid nitrogen and store at -80 degrees. Cell lysis buffer: 5mM Hepes pH 8, 85mM KCl, 0.5% NP40 + protease inhibitors Nuclear lysis buffer: 50mM Hepes pH 8, 10mM EDTA Na2, 0.5% N-Laurylsarkosin + protease inhibitors Solexa libraries were prepared according to manufacturers recommendations with small modifications. In short, 1-10ng of IP-purified, RNase treated, and reverse cross-linked genomic DNA was end-repaired and terminal adenosine residues were added using the NEBNext reagents. Indexed adapters (in house) were ligated, after which the material was size selected at ~230-250 bp (size equals sheered chromatin fragments plus adapters) on a 2% GelGreen (Biotium) stained agarose gel using SafeXtractor-100 gel extractors (5Prime) under blue light. PCR amplification was performed using PE1.0 and PE2.0 primers (Illumina) for 14 cycles for Input samples and 16 cycles for IP-ed samples using the Phusion High-Fidelity PCR Kit (Finnzyme). The PCR-amplified library was purified on a 2% agarose gel, avoiding unincorporated primers and primer-self-ligation products. Library quality was assessed on a Bioanalyzer 2100 system (Agilent).

text: stage 10 to 11

text: egg laying

text: Drosophila virilis

characteristic: organism

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

characteristic: sex

text: white eye mutation line, w[-]

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: European Molecular Biology Laboratory

text: public

text: E-MTAB-3798:L16_Dvir_Bin-EHUD-14-17h-IP-64-9

text: 14 to 17h

text: ArrayExpress

text: Protocols: Wildtype Drosophila virilis (white eye mutation line) flies were grown in population cages at 25 degr. Staged populations of embryos were collected and aged at 25 degrees till the required stage of development is reached. Two independent collections were performed for each timepoint. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 485ul of 37% Formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. A small number of embryos from each collections was set aside to stage each collection. 30 ug of chromatin was brought to RIPA conditions (140mM NaCl / 10mM Tris-HCl pH8,0 / 1mM EDTA / 1% TritonX100 / 0,1% SDS / 0,1% sodium deoxycholate, 1mM PMSF, 1ul Leupeptin/Pepstain and 1 ul Aprotinin). For precipitation, 3ul Dvir-anti Bin (EHUD) antibody was added to each aliquot and incubated overnight at 4 degres on a rotating shaker. For each precipitation, 15 or 20 ul of 50% Protein A Sepharose (PAS) suspension were washed once with 1mL RIPA buffer + 1mg/ml BSA for blocking. In the morning, The antibody/antigen complexes were precipitated with 15 or 20 ul protein A sepharose at 4 degres for 3 hrs and washed 1x with RIPA buffer, 3x with RIPA buffer with increase NaCl (500 mM), 1x in 250mM LiCl / 10mM Tris-HCl pH 8,0 / 1mM EDTA / 0,5% NP-40 / 0,5% sodium deoxycholate and 2x in TE. The DNA was eluted after protease digest and RNAase treatment by incubation at 65 degr overnight and phenol chloroform extracted. ~1g of embryos of early time points (or ~0.5 from later time points) were thawn quickly and resuspended in 15ml ice-cold PBS/Triton + protease inhibitors. Dounce homogenization 20x with loose pestle on ice followed by centrifugation at 400g for 1min at 4 degrees and transfer SN to fresh tube. Centrifuge SN at 1100g for 10 min at 4 degrees and discard SN. Resuspend pellet in 15 ml ice-cold Cell lysis buffer + protease inhibitor Dounce 20x with tight pestle on ice. Transfer two equal aliquots into 15 ml falcon tubes. Centrifuge at 2000g for 4min at 4 degrees to pellet the nuclei. Discard SN. Resuspend pellet in 1ml of ice-cold Nulear-Lysis Buffer + proteas inhibitor and incubate for 20 min at RT Add 1ml ice-cold Nuclear Lysis Buffer + proteas inhibitors Sonicate using Bioruptor in 15 ml faclon tubes with a max of 2 ml in them for 18 cycles with 30 seconds ON / 30 seconds OFF. Transfer to 1.5 ml tubes and centrifuge at 14000 rpm for 10 min at 4 degrees Take SN=chromatin and make aliquots of 400 ul and flash freeze in liquid nitrogen and store at -80 degrees. Cell lysis buffer: 5mM Hepes pH 8, 85mM KCl, 0.5% NP40 + protease inhibitors Nuclear lysis buffer: 50mM Hepes pH 8, 10mM EDTA Na2, 0.5% N-Laurylsarkosin + protease inhibitors Solexa libraries were prepared according to manufacturers recommendations with small modifications. In short, 1-10ng of IP-purified, RNase treated, and reverse cross-linked genomic DNA was end-repaired and terminal adenosine residues were added using the NEBNext reagents. Indexed adapters (in house) were ligated, after which the material was size selected at ~230-250 bp (size equals sheered chromatin fragments plus adapters) on a 2% GelGreen (Biotium) stained agarose gel using SafeXtractor-100 gel extractors (5Prime) under blue light. PCR amplification was performed using PE1.0 and PE2.0 primers (Illumina) for 14 cycles for Input samples and 16 cycles for IP-ed samples using the Phusion High-Fidelity PCR Kit (Finnzyme). The PCR-amplified library was purified on a 2% agarose gel, avoiding unincorporated primers and primer-self-ligation products. Library quality was assessed on a Bioanalyzer 2100 system (Agilent).

text: stage 13 to 14

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: European Molecular Biology Laboratory

text: public

text: E-MTAB-3798:L16_Dvir_Bin-EHUD-7-10h-IP-74-9

text: 7 to 10h

text: ArrayExpress

text: stage 10 to 11

characteristic: developmental stage

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]


text: European Molecular Biology Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3798:L16_Dvir_Tin-EJRI-5-7h-IP-76-13

text: 5 to 7h

text: ArrayExpress

text: stage 8 to 9

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]


text: European Molecular Biology Laboratory

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3798:Dvir-Chip_Mef2-DRC4-14-17h-IP-15-4

characteristic: Submitter Id

text: 14 to 17h

text: ArrayExpress

text: stage 13 to 14

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]


text: European Molecular Biology Laboratory

text: public

text: E-MTAB-3798:Dvir-Chip_Tinman-EJRI-7-10h-IP-3-4

text: 7 to 10h

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: description

text: stage 10 to 11

text: egg laying

text: Drosophila virilis

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

text: white eye mutation line, w[-]


text: European Molecular Biology Laboratory

text: public

text: E-MTAB-3798:Dvir-Chip_Twist-DNOA-2-5h-IP-18-14

text: 2 to 5h

text: ArrayExpress

text: Protocols: Wildtype Drosophila virilis (white eye mutation line) flies were grown in population cages at 25 degr. Staged populations of embryos were collected and aged at 25 degrees till the required stage of development is reached. Two independent collections were performed for each timepoint. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 485ul of 37% Formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. A small number of embryos from each collections was set aside to stage each collection. 30 ug of chromatin was brought to RIPA conditions (140mM NaCl / 10mM Tris-HCl pH8,0 / 1mM EDTA / 1% TritonX100 / 0,1% SDS / 0,1% sodium deoxycholate, 1mM PMSF, 1ul Leupeptin/Pepstain and 1 ul Aprotinin). For precipitation, 3ul Dvir-anti Twi (DNOH or DNOA) antibody was added to each aliquot and incubated overnight at 4 degres on a rotating shaker. For each precipitation, 25 ul of 50% Protein A Sepharose (PAS) suspension were washed once with 1mL RIPA buffer + 1mg/ml BSA for blocking. In the morning, The antibody/antigen complexes were precipitated with 25 ul protein A sepharose at 4 degres for 3 hrs and washed 1x with RIPA buffer, 3x with RIPA buffer with increase NaCl (500 mM), 1x in 250mM LiCl / 10mM Tris-HCl pH 8,0 / 1mM EDTA / 0,5% NP-40 / 0,5% sodium deoxycholate and 2x in TE. The DNA was eluted after protease digest and RNAase treatment by incubation at 65 degr overnight and phenol chloroform extracted. ~1g of embryos of early time points (or ~0.5 from later time points) were thawn quickly and resuspended in 15ml ice-cold PBS/Triton + protease inhibitors. Dounce homogenization 20x with loose pestle on ice followed by centrifugation at 400g for 1min at 4 degrees and transfer SN to fresh tube. Centrifuge SN at 1100g for 10 min at 4 degrees and discard SN. Resuspend pellet in 15 ml ice-cold Cell lysis buffer + protease inhibitor Dounce 20x with tight pestle on ice. Transfer two equal aliquots into 15 ml falcon tubes. Centrifuge at 2000g for 4min at 4 degrees to pellet the nuclei. Discard SN. Resuspend pellet in 1ml of ice-cold Nulear-Lysis Buffer + proteas inhibitor and incubate for 20 min at RT Add 1ml ice-cold Nuclear Lysis Buffer + proteas inhibitors Sonicate using Bioruptor in 15 ml faclon tubes with a max of 2 ml in them for 18 cycles with 30 seconds ON / 30 seconds OFF. Transfer to 1.5 ml tubes and centrifuge at 14000 rpm for 10 min at 4 degrees Take SN=chromatin and make aliquots of 400 ul and flash freeze in liquid nitrogen and store at -80 degrees. Cell lysis buffer: 5mM Hepes pH 8, 85mM KCl, 0.5% NP40 + protease inhibitors Nuclear lysis buffer: 50mM Hepes pH 8, 10mM EDTA Na2, 0.5% N-Laurylsarkosin + protease inhibitors Solexa libraries were prepared according to manufacturers recommendations with small modifications. In short, 1-10ng of IP-purified, RNase treated, and reverse cross-linked genomic DNA was end-repaired and terminal adenosine residues were added using the NEBNext reagents. Indexed adapters (in house) were ligated, after which the material was size selected at ~230-250 bp (size equals sheered chromatin fragments plus adapters) on a 2% GelGreen (Biotium) stained agarose gel using SafeXtractor-100 gel extractors (5Prime) under blue light. PCR amplification was performed using PE1.0 and PE2.0 primers (Illumina) for 14 cycles for Input samples and 16 cycles for IP-ed samples using the Phusion High-Fidelity PCR Kit (Finnzyme). The PCR-amplified library was purified on a 2% agarose gel, avoiding unincorporated primers and primer-self-ligation products. Library quality was assessed on a Bioanalyzer 2100 system (Agilent).

text: stage 5 to 7

text: egg laying

characteristic: initial time point

text: Drosophila virilis

characteristic: organism

text: Drosophila virilis

text: Drosophila virilis

text: mixed sex

characteristic: sex

text: white eye mutation line, w[-]


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ZMBH

text: public

text: ArrayExpress

text: Protocols: Human isolate grown in rats Standard illumina kit

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ZMBH

text: public

text: ArrayExpress

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427 pHD1313

characteristic: title


text: ZMBH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427 pHD2060


text: ZMBH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427 2T1


text: ZMBH

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: Culture Human isolate grown in rats Standard illumina kit

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei


text: PUBLIC HEALTH ENGLAND

text: public

tag: Namespace:PUBLIC HEALTH ENGLAND

text: viral DNA sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: The National Institute for Biological Standards and Control (NIBSC)

characteristic: geographic location (region and locality)

text: viral mixture sample

characteristic: isolate

text: metagenome

text: metagenome


text: PUBLIC HEALTH ENGLAND

text: public

text: viral RNA sample

characteristic: description

text: United Kingdom

text: viral mixture sample

text: metagenome

characteristic: organism

text: metagenome


characteristic: ENA-FIRST-PUBLIC

text: PUBLIC HEALTH ENGLAND

text: public

text: porcine faecal sample replicate 1

text: United Kingdom

text: porcine sample

text: metagenome

text: metagenome


characteristic: ENA-LAST-UPDATE

text: PUBLIC HEALTH ENGLAND

text: public

text: porcine faecal sample replicate 2

text: United Kingdom

text: porcine sample

text: metagenome

text: metagenome


text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

text: Chromosome and plasmid sequences of VAP LM33 strain

text: France

text: patient

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

text: VAP LM33


text: 洞庭晚籼

text: Dongtingwanxian

characteristic: ENA-CHECKLIST

characteristic: External Id

text: BGI

text: public

text: Indica

characteristic: anonymized name

text: rice

characteristic: common name

text: China

characteristic: country

text: These data have been produced as part of The 3000 Rice Genome Project, which is an international effort to resequence a core collection of >3000 rice accessions from 92 countries. With the release of the sequencing data, the project calls for the global rice community to take advantage of this data as a foundation for establishing a global, public rice genetic/genomic database and information platform for advancing rice breeding technology for future rice improvement. Please see the here http://dx.doi.org/10.5524/200001 for further details.

text: Oryza sativa

text: Oryza sativa

text: MC

characteristic: source

text: leaf

characteristic: tissue type

text: WGS sequence of Rice line B231


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX408

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: BGI

text: public

text: Indica

text: rice

text: China

characteristic: description

characteristic: isolate

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX409


characteristic: ENA-CHECKLIST

characteristic: External Id

text: BGI

text: public

text: Indica

characteristic: anonymized name

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX410


text: BGI

text: public

text: Indica

text: rice

characteristic: common name

text: China

characteristic: country

text: Oryza sativa

text: Oryza sativa

text: IRMBN

characteristic: source

text: leaf

text: WGS sequence of Rice line CX411


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

characteristic: tissue type

text: WGS sequence of Rice line CX413


text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX414


characteristic: ENA-FIRST-PUBLIC

text: BGI

text: public

characteristic: Submitter Id

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX416

characteristic: title


characteristic: ENA-LAST-UPDATE

text: BGI

text: public

text: Indica

text: rice

text: China

characteristic: description

characteristic: isolate

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX417


characteristic: ENA-CHECKLIST

characteristic: External Id

text: BGI

text: public

text: Indica

text: rice

text: China

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX418


text: BGI

text: public

text: Indica

characteristic: anonymized name

text: rice

characteristic: common name

text: China

characteristic: country

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX419


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

characteristic: source

text: leaf

text: WGS sequence of Rice line CX420


text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

characteristic: tissue type

text: WGS sequence of Rice line CX421


characteristic: ENA-FIRST-PUBLIC

text: BGI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX422


characteristic: ENA-LAST-UPDATE

text: BGI

text: public

text: Indica

text: rice

text: China

characteristic: description

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX423

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: BGI

text: public

text: Indica

text: rice

text: China

characteristic: isolate

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX424


text: BGI

text: public

text: Indica

characteristic: anonymized name

text: rice

characteristic: common name

text: China

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX425


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Indica

text: rice

text: China

characteristic: country

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX426


text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

characteristic: source

text: leaf

text: WGS sequence of Rice line CX427


characteristic: ENA-FIRST-PUBLIC

text: BGI

text: public

characteristic: SRA accession

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

characteristic: tissue type

text: WGS sequence of Rice line CX428


text: shen-nong 1033

characteristic: ENA-LAST-UPDATE

text: BGI

text: public

characteristic: Submitter Id

text: Temperate japonica

text: rice

text: China

characteristic: description

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX429


characteristic: ENA-CHECKLIST

characteristic: External Id

text: BGI

text: public

text: Indica

text: rice

text: China

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX561

characteristic: title


text: BGI

text: public

text: Temperate japonica

characteristic: anonymized name

text: rice

characteristic: common name

text: China

characteristic: isolate

text: Oryza sativa

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX578


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Temperate japonica

text: rice

text: China

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: IRMBN

text: leaf

text: WGS sequence of Rice line CX579


text: John Innes Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:John Innes Centre

text: bread wheat

text: Schomburgk

characteristic: cultivar

text: Wheat, cultivar Schomburgk, EMS derived mutant 1S

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-FIRST-PUBLIC

text: John Innes Centre

text: public

characteristic: SRA accession

text: bread wheat

text: Schomburgk

text: Wheat, cultivar Schomburgk, EMS derived mutant 2S

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-LAST-UPDATE

text: John Innes Centre

text: public

text: bread wheat

text: Schomburgk

text: Wheat, cultivar Schomburgk, EMS derived mutant 3S1

text: Triticum aestivum

text: Triticum aestivum


text: John Innes Centre

text: public

characteristic: Submitter Id

text: bread wheat

text: Schomburgk

text: Wheat, cultivar Schomburgk, EMS derived mutant 5S1

text: Triticum aestivum

text: Triticum aestivum


text: John Innes Centre

text: public

text: bread wheat

text: Schomburgk

text: Wheat, cultivar Schomburgk, EMS derived mutant 6S

characteristic: description

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-CHECKLIST

text: John Innes Centre

text: public

text: bread wheat

text: Schomburgk

text: Wheat, cultivar Schomburgk, EMS derived mutant 7S1

text: Triticum aestivum

text: Triticum aestivum


characteristic: External Id

text: John Innes Centre

text: public

text: bread wheat

text: Schomburgk

text: Wheat, cultivar Schomburgk

text: Schomburgk

text: Triticum aestivum

text: Triticum aestivum


text: OX

text: public

characteristic: broker name

text: Neisseria meningitidis

text: Neisseria meningitidis

characteristic: title


text: OX

text: public

text: Neisseria polysaccharea

text: Neisseria polysaccharea


text: OX

text: public

text: Neisseria lactamica

text: Neisseria lactamica


text: OX

text: public

text: Neisseria sp.

text: Neisseria sp.


text: OX

text: public

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: OX

text: public

text: KEN

text: Neisseria

characteristic: genus

text: urethral swab

text: urinary tract

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

type: AMR curated data - CABBAGE

value: doxycycline

value: e-test

value: mg/L

value: Neisseria gonorrhoeae

value: azithromycin


text: OX

text: public

text: KEN

text: Neisseria

characteristic: isolate

text: rectal swab

text: gastrointestinal system

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

value: tetracycline

value: disk diffusion

value: mm


text: OX

characteristic: INSDC center name

text: public

text: KEN

text: Neisseria

text: urethral swab

text: urinary tract

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: OX

characteristic: INSDC first public

text: public

text: KEN

text: Neisseria

text: urethral swab

text: urinary tract

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

value: penicillin


text: OX

text: public

text: KEN

text: Neisseria

text: urethral swab

text: urinary tract

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae


text: John Innes Centre

characteristic: INSDC last update

text: public

text: bread wheat

characteristic: common name

text: Triticum aestivum, accession CS1D5406, carrying the Sr45 resistance gene

text: Triticum aestivum

text: Triticum aestivum


text: John Innes Centre

text: public

characteristic: INSDC status

text: bread wheat

text: Triticum aestivum, accession CS1D5406, carrying the Sr45 resistance gene. EMS mutant M49S1

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-FIRST-PUBLIC

text: John Innes Centre

text: public

text: bread wheat

text: Triticum aestivum, accession CS1D5406, carrying the Sr45 resistance gene. EMS mutant M52S1

text: Triticum aestivum

text: Triticum aestivum


text: John Innes Centre

text: public

characteristic: SRA accession

text: bread wheat

text: Triticum aestivum, accession CS1D5406, carrying the Sr45 resistance gene. EMS mutant M55S1

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-LAST-UPDATE

text: John Innes Centre

text: public

text: bread wheat

text: Triticum aestivum, accession CS1D5406, carrying the Sr45 resistance gene. EMS mutant M57S1

text: Triticum aestivum

text: Triticum aestivum


text: John Innes Centre

text: public

characteristic: Submitter Id

text: bread wheat

text: Triticum aestivum, accession CS1D5406, carrying the Sr45 resistance gene. EMS mutant M59S1

text: Triticum aestivum

text: Triticum aestivum


text: John Innes Centre

text: public

text: bread wheat

text: Triticum aestivum, accession CS1D5406, carrying the Sr45 resistance gene. EMS mutant M61S1

characteristic: description

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-CHECKLIST

text: OX

text: public

text: unidentified

text: unidentified


characteristic: External Id

text: OX

text: public

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

characteristic: broker name

text: Neisseria zoodegmatis

text: Neisseria zoodegmatis


text: WUR

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

characteristic: title


text: OX

text: public

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: OX

text: public

text: Dichelobacter nodosus

text: Dichelobacter nodosus


text: WUSL

text: public

text: This sample is created to deposit the assembly derived from all the fecal virome cross-assembly. For the individual samples refer to the group sample ERG005340

text: Pool

text: human gut metagenome

text: human gut metagenome

text: A sample composed of a pool of human samples


text: GIGA-R, University of Liege

text: public

tag: Namespace:GIGA-R, University of Liege

text: Pancreatic Ductal cells

characteristic: cell type

text: Isabelle Manfroid and David Bergeman

characteristic: collected by

text: zebrafish

text: Adult

characteristic: dev stage

text: ZDDM

characteristic: lab host

text: Danio rerio

text: Danio rerio

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:University Medical Center Hamburg-Eppendorf

text: human

text: A

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Medical Center Hamburg-Eppendorf

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

characteristic: common name

text: B

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: Submitter Id

text: human

text: A

text: Homo sapiens

text: Homo sapiens


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_277190

characteristic: broker name

characteristic: description

text: Neisseria meningitidis

text: Neisseria meningitidis

characteristic: title


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_278190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_279190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_280190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_281190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_282190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_283190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_284190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_285190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_286101

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_286190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_287101

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_287190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_288101

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_288190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_289101

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_289190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_290101

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_290190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_291190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_292190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_293190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_294190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: SAMPLE_WTCHG_161476_161477_163074_163075_295190

text: Neisseria meningitidis

text: Neisseria meningitidis


text: CENTRE FOR GEOGENETICS

text: public

tag: Namespace:CENTRE FOR GEOGENETICS

text: Equus caballus ferus

text: Equus caballus ferus

text: Female

characteristic: sex


text: CENTRE FOR GEOGENETICS

characteristic: INSDC center name

text: public

text: Equus caballus ferus

text: Equus caballus ferus

text: Male


text: CENTRE FOR GEOGENETICS

characteristic: INSDC first public

text: public

text: horse

text: Equus caballus

text: Equus caballus

text: Male


Holotype

text: CENTRE FOR GEOGENETICS

characteristic: INSDC last update

text: public

text: Holotype

text: Holotype

text: Equus caballus ferus

text: Equus caballus ferus

text: Male

text: Holotype


Paratype

text: CENTRE FOR GEOGENETICS

text: public

text: Paratype

text: Paratype

characteristic: isolate

text: Equus caballus ferus

text: Equus caballus ferus

text: Female

text: Paratype


text: CENTRE FOR GEOGENETICS

text: public

text: horse

text: Equus caballus

characteristic: organism

text: Equus caballus

text: Female


characteristic: ENA-FIRST-PUBLIC

text: GIGA-R, University of Liege

text: public

text: Pancreatic Beta cells

characteristic: cell type

text: Estefania Tarifeño-Saldivia

characteristic: collected by

text: zebrafish

text: Beta cells from adults purified by FACS

text: Adult

characteristic: dev stage

text: Tg(ins:GFP)

text: ZDDM

characteristic: lab host

text: Danio rerio

text: Danio rerio


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: GIGA-R, University of Liege

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Pancreatic Alpha cells

text: Estefania Tarifeño-Saldivia

text: zebrafish

characteristic: common name

text: Alpha cells from adults purified by FACS

text: Adult

text: Tg(gcga:GFP);Tg(ins:NTR-mCherry)

text: ZDDM

text: Danio rerio

text: Danio rerio

text: Tg(gcga:GFP);Tg(ins:NTR-mCherry)

characteristic: strain


characteristic: External Id

text: GIGA-R, University of Liege

text: public

characteristic: Submitter Id

text: Pancreatic Alpha cells

text: Estefania Tarifeño-Saldivia

text: zebrafish

characteristic: description

text: Adult

text: Tg(gcga:GFP);Tg(ins:NTR-mCherry)

text: ZDDM

text: Danio rerio

text: Danio rerio

characteristic: title


text: GIGA-R, University of Liege

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Pancreatic Delta cells

text: Estefania Tarifeño-Saldivia

text: zebrafish

text: Delta cells from adults purified by FACS

text: Adult

characteristic: isolate

text: ZDDM

text: Danio rerio

text: Danio rerio


characteristic: ENA-FIRST-PUBLIC

text: GIGA-R, University of Liege

text: public

text: Pancreatic Delta cells

characteristic: cell type

text: Estefania Tarifeño-Saldivia

characteristic: collected by

text: zebrafish

text: Beta cells from adults purified by FACS

text: Adult

text: ZDDM

text: Danio rerio

characteristic: organism

text: Danio rerio


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: GIGA-R, University of Liege

text: public

text: Pancreatic Acinar cells

text: Isabelle Manfroid

text: zebrafish

text: Acinar cells from adults purified by FACS

text: Adult

characteristic: dev stage

text: ZDDM

characteristic: lab host

text: Danio rerio

text: Danio rerio


text: TGAC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: TGAC

characteristic: broker name

text: European ash

characteristic: common name

text: Fraxinus excelsior

text: Fraxinus excelsior


characteristic: External Id

text: CENTRE FOR GEOGENETICS

text: public

characteristic: Submitter Id

text: horse

text: Franches-Montagnes

text: Equus caballus

text: Equus caballus

text: M

characteristic: sex

text: Franches-Montagnes horses

characteristic: title


text: Hero Espana S.A.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Hero Espana S.A.

text: CNCM i-4034

characteristic: isolate

text: faeces from breast-fed infant

characteristic: isolation source

text: Lactobacillus paracasei

text: Lactobacillus paracasei

text: CNCM i-4034

characteristic: strain

text: L. paracasei CNCM i-434


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Hero Espana S.A.

text: public

text: Lactobacillus rhamnosus CNCM i-4036

characteristic: description

text: CNCM i-4036

text: faecres of brest-fed infant

text: Lactobacillus rhamnosus

characteristic: organism

text: Lactobacillus rhamnosus

text: CNCM i-4036

text: L. rhamnosus CNCM i-4036


text: Hero Espana S.A.

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bifidobacterium breve CNCM i-4035

text: CNCM i-4035

text: faeces of brest-fed infant

text: Bifidobacterium breve

text: Bifidobacterium breve

text: CNCM i-4035

text: B. breve CNCM i-4035


characteristic: External Id

text: UNIVERSITY OF TORONTO MISSISSAUGA

text: public

tag: Namespace:UNIVERSITY OF TORONTO MISSISSAUGA

text: CC-2342 Mutation Accumulation Line 1

text: USA: Pennsylvania

characteristic: geographic location (country and/or sea)

characteristic: mating type

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii


text: UNIVERSITY OF TORONTO MISSISSAUGA

text: public

characteristic: Submitter Id

text: CC-2342 Mutation Accumulation Line 14

text: USA: Pennsylvania

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii

characteristic: title


text: CENTRE FOR GEOGENETICS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: horse

characteristic: common name

text: Equus caballus

text: Equus caballus

text: Female

characteristic: sex

text: Domesticated horses


text: CENTRE FOR GEOGENETICS

characteristic: INSDC last update

text: public

text: horse

text: Equus caballus

text: Equus caballus

text: Male

text: Domesticated horses


characteristic: ENA-CHECKLIST

text: FZB

text: public

text: Mycobacterium tuberculosis complex bacterium

text: MTBC isolate


characteristic: ENA-FIRST-PUBLIC

text: JIC

text: public

text: pigeon pea

text: Cajanus cajan

text: Cajanus cajan

text: CcRpp1 R gene cloning in Cajanus cajan


name: Ectomycorrhizal root-tip colonised by Rhizoscyphus_Day 5_Tag13

characteristic: ENA-LAST-UPDATE

text: Uppsala BioCenter

text: public

tag: Namespace:Uppsala BioCenter

text: metagenome

text: metagenome

text: Bacterial microbiome of ectomycorrhizal root-tip


name: Ectomycorrhizal root-tip colonised by Phialocephala_Day 5_Tag14

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Day 5_Tag15

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Day 5_Tag16

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Day 5_Tag17

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Day 5_Tag18

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Day 5_Tag19

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Day 5_Tag20

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 1_Tag21

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Rhizoscyphus_Week 1_Tag22

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Rhizoscyphus_Week 1_Tag23

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 1_Tag24

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 1_Tag25

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 1_Tag26

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 2_Tag27

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Rhizoscyphus_Week 2_Tag28

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 2_Tag29

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 2_Tag30

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 2_Tag31

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 2_Tag32

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 2_Tag33

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 2_Tag34

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 2_Tag35

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 2_Tag36

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 2_Tag37

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 4_Tag38

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 4_Tag39

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 4_Tag40

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 4_Tag41

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 4_Tag42

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 4_Tag43

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Tomentellopsis_Week 4_Tag44

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 4_Tag45

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 4_Tag46

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 4_Tag47

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 4_Tag48

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 4_Tag49

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 4_Tag50

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 4_Tag51

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 4_Tag52

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Rhizoscyphus_Week 4_Tag53

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 4_Tag54

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 4_Tag55

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 4_Tag56

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8a_Tag57

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Tomentellopsis_Week 8a_Tag58

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Tomentellopsis_Week 8a_Tag59

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8a_Tag60

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8a_Tag61

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8a_Tag62

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8a_Tag63

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8a_Tag64

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 8a_Tag65

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Rhizoscyphus_Week 8a_Tag66

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8a_Tag67

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8a_Tag68

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8a_Tag69

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 8b_Tag70

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 8b_Tag71

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 8b_Tag72

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8b_Tag73

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8b_Tag74

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 8b_Tag75

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8b_Tag76

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 8b_Tag77

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8b_Tag78

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 8b_Tag79

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 8b_Tag80

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8b_Tag81

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Cenococcum_Week 8b_Tag82

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8b_Tag83

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8b_Tag84

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8c_Tag85

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8c_Tag86

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 8c_Tag87

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 8c_Tag88

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8c_Tag89

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 8c_Tag90

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8c_Tag91

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Tomentellopsis_Week 8c_Tag92

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8c_Tag93

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 8c_Tag94

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 8c_Tag95

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 8c_Tag96

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8c_Tag97

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Cenococcum_Week 8c_Tag98

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Cenococcum_Week 8c_Tag99

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 8c_Tag100

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8c_Tag101

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 8c_Tag102

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16a_Tag103

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16a_Tag104

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 16a_Tag105

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16a_Tag106

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16a_Tag107

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16a_Tag108

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16a_Tag109

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16a_Tag110

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Cenococcum_Week 16a_Tag111

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 16b_Tag112

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 16b_Tag113

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 16b_Tag114

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16b_Tag115

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16b_Tag116

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 16b_Tag117

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16b_Tag118

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16b_Tag119

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16b_Tag120

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16b_Tag121

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Cenococcum_Week 16b_Tag122

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 16b_Tag123

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text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16b_Tag124

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16b_Tag125

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 16b_Tag126

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 16b_Tag127

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 16b_Tag128

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 16c_Tag129

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text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Tomentellopsis_Week 16c_Tag130

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16c_Tag131

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16c_Tag132

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Tomentellopsis_Week 16c_Tag133

text: Uppsala BioCenter

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text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Tomentellopsis_Week 16c_Tag134

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16c_Tag135

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 16c_Tag136

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text: metagenome

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name: Ectomycorrhizal root-tip colonised by Paxillus_Week 16c_Tag137

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 16c_Tag138

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text: public

text: metagenome

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name: Ectomycorrhizal root-tip colonised by Russula_Week 16c_Tag139

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text: public

text: metagenome

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name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16c_Tag140

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text: public

text: metagenome

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name: Ectomycorrhizal root-tip colonised by Russula_Week 16c_Tag141

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16c_Tag142

text: Uppsala BioCenter

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text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Cenococcum_Week 16c_Tag143

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text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 16c_Tag144

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 16c_Tag145

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 24a_Tag146

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24a_Tag1a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 24a_Tag2a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 24a_Tag3a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 24a_Tag4a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24a_Tag5a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24a_Tag6a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 24a_Tag7a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 24a_Tag8a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24a_Tag9a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 24a_Tag10a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 24a_Tag11a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24a_Tag12a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24a_Tag13a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24a_Tag14a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24b_Tag15a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24b_Tag16a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24b_Tag17a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24b_Tag18a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24b_Tag19a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24b_Tag20a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24b_Tag21a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 24b_Tag22a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24b_Tag23a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 24b_Tag24a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 24b_Tag25a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24b_Tag26a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 24b_Tag27a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 24c_Tag28a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 24c_Tag29a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Paxillus_Week 24c_Tag30a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24c_Tag31a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24c_Tag32a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Cenococcum_Week 24c_Tag33a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Meliniomyces_Week 24c_Tag34a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Cenococcum_Week 24c_Tag35a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24c_Tag36a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 24c_Tag37a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24c_Tag38a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Phialocephala_Week 24c_Tag39a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Russula_Week 24c_Tag40a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Ectomycorrhizal root-tip colonised by Piloderma_Week 4_Tag42a

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


text: UNIVERSITY OF CAMBRIDGE

text: public

tag: Namespace:UNIVERSITY OF CAMBRIDGE

text: flaB (CJM1_1295-1294) gene deletion mutant

characteristic: description

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Campylobacter jejuni M1 mutant


text: UNIVERSITY OF CAMBRIDGE

text: public

text: flaD (CJM1_0851) gene deletion mutant

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni

text: Campylobacter jejuni M1 mutant


text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: pflA (CJM1_1501) gene deletion mutant

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Campylobacter jejuni M1 mutant


text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: SRA accession

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Campylobacter jejuni M1 wild type


Corvina accelerated withering

characteristic: External Id

text: UNIVERSITY OF VERONA

text: public

text: Corvina accelerated withering

tag: Namespace:UNIVERSITY OF VERONA

text: plant metagenome

text: plant metagenome

text: Corvina accelerated withering


Corvina traditional withering

text: UNIVERSITY OF VERONA

text: public

text: Corvina traditional withering

text: wine grape

text: Vitis vinifera

text: Vitis vinifera

text: Corvina traditional withering


Kallipyga gabonensis

text: URMITE

text: public

text: Kallipyga gabonensis

text: Kallipyga sp. GM4

text: Kallipyga sp. GM4

characteristic: strain

text: Kallipyga gabonensis genome


Mediannikovella massiliensis

text: URMITE

text: public

text: Mediannikovella massiliensis

text: Clostridiales bacterium mt11

text: Clostridiales bacterium mt11

text: Mediannikovella massiliensis genome


text: Medical University of South Carolina

text: public

text: 1287_rep1_SUM44_shLacZ_no_estrogen_ERa_ChIP

tag: Namespace:Medical University of South Carolina

characteristic: cell line

text: human

text: SUM-44PE cells cultured in estrogen-free conditions then fixed and chromatin immunoprecipitation performed with anti-estrogen receptor alpha antibody followed by 35bp single-end Illumina sequencing

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: 1287_rep2_SUM44_shLacZ_no_estrogen_ERa_ChIP

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: 1287_rep3_SUM44_shLacZ_no_estrogen_ERa_ChIP

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: Medical University of South Carolina

characteristic: INSDC center name

text: public

text: 1286_rep1_SUM44_shLacZ_estrogen-treated_ERa_ChIP

text: human

text: SUM-44PE cells cultured in estrogen-free conditions then treated with 10nM beta-estradiol for 45 minutes before fixing, then chromatin immunoprecipitation performed with anti-estrogen receptor alpha antibody followed by 35bp single-end Illumina sequencing

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

characteristic: INSDC first public

text: public

text: 1286_rep2_SUM44_shLacZ_estrogen-treated_ERa_ChIP

text: human

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: 1288_rep1_SUM44_shWHSC1L1short_estrogen-treated_ERa_ChIP

text: human

characteristic: common name

text: SUM-44PE cells lentivirally transduced with sh RNA specific for WHSC1L1 short isoform cultured in estrogen-free conditions then treated with 10nM beta-estradiol for 45 minutes before fixing, then chromatin immunoprecipitation performed with anti-estrogen receptor alpha antibody followed by 35bp single-end Illumina sequencing

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: 1288_rep2_SUM44_shWHSC1L1short_estrogen-treated_ERa_ChIP

text: human

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: 1288_rep3_SUM44_shWHSC1L1short_estrogen-treated_ERa_ChIP

text: human

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: 1286_rep3_SUM44_shLacZ_estrogen-treated_ERa_ChIP

text: human

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: human

text: SUM-44PE cells cultured in estrogen-free conditions then fixed and 35bp single-end Illumina sequenced

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: human

text: SUM-44PE cells treated with estrogen for 6 hours then whole mRNA harvested for 101bp paired-end Illumina sequencing

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: SUM44_rep1_estrogen-treated_12hrs_rnaseq

text: human

text: SUM-44PE cells treated with estrogen for 12 hours then whole mRNA harvested for 101bp paired-end Illumina sequencing

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: SUM44_rep2_estrogen-treated_12hrs_rnaseq

text: human

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: SUM44_rep1_estrogen-treated_24hrs_rnaseq

text: human

text: SUM-44PE cells treated with estrogen for 24 hours then whole mRNA harvested for 101bp paired-end Illumina sequencing

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: SUM44_rep2_estrogen-treated_24hrs_rnaseq

text: human

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: human

text: Whole mRNA lysates from SUM-44PE shLacZ cells made into 101bp paired-end libraries and sequenced on Illumina HiSeq2500

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: human

text: Whole mRNA lysates from SUM-44PE shWHSC1L1total cells made into 101bp paired-end libraries and sequenced on Illumina HiSeq2500

text: Homo sapiens

text: Homo sapiens


text: Medical University of South Carolina

text: public

text: human

text: Whole mRNA lysates from SUM-44PE shWHSC1L1short cells made into 101bp paired-end libraries and sequenced on Illumina HiSeq2500

text: Homo sapiens

text: Homo sapiens


text: ED

text: public

text: Bacteroides fragilis BE1

text: Bacteroides fragilis

text: Bacteroides fragilis

text: Bacteroides fragilis BE1


Mimivirus univirus

text: URMITE

text: public

text: Mimivirus univirus

text: a defense system in Mimivirus confers resistance to virophage

text: Mimivirus univirus

text: Mimivirus univirus

text: MIMIVIRE


Moumouvirus boug1

text: URMITE

text: public

text: Moumouvirus boug1

text: Moumouvirus boug1

text: Moumouvirus boug1

text: MIMIVIRE


text: UMCU

text: public

text: human

text: HCT116 5/4

text: Homo sapiens

text: Homo sapiens


text: UMCU

text: public

text: human

text: HCT116 H2B-GFP chr 8/3 clone 5

text: Homo sapiens

text: Homo sapiens


text: UMCU

text: public

text: human

text: HCT116 H2B-GFP chr 8/3 clone 6

text: Homo sapiens

text: Homo sapiens


text: UMCU

text: public

text: human

text: HCT116 H2B-GFP chr 8/3 clone 1

text: Homo sapiens

text: Homo sapiens


text: UMCU

text: public

text: human

text: HCT116 H2B-GFP chr 8/3 clone 3

text: Homo sapiens

text: Homo sapiens


text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: public

tag: Namespace:ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: Dutch Mobile Laboratories

characteristic: collecting institution

characteristic: collection date

text: Dutch Mobile Laboratories

characteristic: collector name

text: International collaborative projects are currently underway to study EBOV evolution and epidemiology in more detail and whole genome sequences from patients tested positive for EBOV in Dutch Mobile Laboratories may aid in this global effort to understand the current EBOV epidemic and in the combat against EBOV disease. Here we present an analysis of newly determined Ebolavirus genome sequences from the Western Urban and Kono regions. Most viruses were isolated from patients infected in February and March 2015, but the data also include newly circulating strains from the end of June 2015 from the Magazine Wharf area of Freetown, Sierra Leone.

text: Sierra Leone

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not collected

characteristic: host subject id

characteristic: isolate

text: blood

characteristic: isolation source host associated

text: Zaire ebolavirus

text: Zaire ebolavirus

text: Ebola virus sequencing Dutch Mobile Laboratories


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Dutch Mobile Laboratories

text: Dutch Mobile Laboratories

characteristic: description

text: Sierra Leone

text: Human

text: not collected

text: Homo sapiens

text: male

text: not collected

text: blood

text: Zaire ebolavirus

characteristic: organism

text: Zaire ebolavirus

characteristic: strain


text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Dutch Mobile Laboratories

characteristic: collecting institution

characteristic: collection date

text: Dutch Mobile Laboratories

characteristic: collector name

text: Sierra Leone

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not collected

text: Homo sapiens

text: female

text: not collected

text: swab

text: Zaire ebolavirus

text: Zaire ebolavirus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: public

text: Dutch Mobile Laboratories

text: Dutch Mobile Laboratories

text: Sierra Leone

text: Human

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not collected

characteristic: host subject id

characteristic: isolate

text: swab

characteristic: isolation source host associated

text: Zaire ebolavirus

text: Zaire ebolavirus


characteristic: External Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Dutch Mobile Laboratories

text: Dutch Mobile Laboratories

characteristic: description

text: Sierra Leone

text: Human

text: not collected

text: Homo sapiens

text: not collected

text: not collected

text: blood

text: Zaire ebolavirus

characteristic: organism

text: Zaire ebolavirus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MDC

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: ZBTB24 ChIP-seq and RNA-seq after ZBTB24 knockdown

text: Homo sapiens

text: Homo sapiens

characteristic: title


Niameyia massiliensis

characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: Niameyia massiliensis

text: Culturomics study of the human gut microbiota of a healthy child

text: Lachnospiraceae bacterium mt14

text: Lachnospiraceae bacterium mt14

text: Niameyia massiliensis genome


text: UConn Health

text: public

tag: Namespace:UConn Health

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Mixed (Males + Females)

characteristic: sex

text: Heads

characteristic: tissue type

text: Test-Test-Test


characteristic: External Id

text: UConn Health

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster


autralis 1

text: ICBS UFRGS

characteristic: INSDC center name

text: public

text: autralis 1

tag: Namespace:ICBS UFRGS

characteristic: collection date

text: South American fur seal

text: Brazil

characteristic: geographic location (country and/or sea)

text: Arctocephalus australis

text: Arctocephalus australis

text: Male

text: Gut Microbiota Fur Seal


australis 2

tag: attribute

text: ICBS UFRGS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: australis 2

text: South American fur seal

text: Brazil

text: Arctocephalus australis

text: Arctocephalus australis

text: Female

text: Gut Microbiota Fur Seal


australis 3

text: ICBS UFRGS

text: public

characteristic: SRA accession

text: australis 3

text: South American fur seal

text: Brazil

text: Arctocephalus australis

characteristic: organism

text: Arctocephalus australis

text: Male

text: Gut Microbiota Fur Seal


australis 4

characteristic: ENA-CHECKLIST

text: ICBS UFRGS

text: public

text: australis 4

text: South American fur seal

text: Brazil

text: Arctocephalus australis

text: Arctocephalus australis

text: Male

text: Gut Microbiota Fur Seal


australis 5

characteristic: ENA-FIRST-PUBLIC

text: ICBS UFRGS

text: public

text: australis 5

text: South American fur seal

text: Brazil

text: Arctocephalus australis

text: Arctocephalus australis

text: Male

text: Gut Microbiota Fur Seal


australis 6

text: ICBS UFRGS

text: public

text: australis 6

characteristic: Submitter Id

text: South American fur seal

text: Brazil

text: Arctocephalus australis

text: Arctocephalus australis

text: Female

text: Gut Microbiota Fur Seal


tropicalis 7

text: ICBS UFRGS

text: public

text: tropicalis 7

text: subantarctic fur seal

characteristic: common name

text: Brazil

text: Arctocephalus tropicalis

text: Arctocephalus tropicalis

text: Male

text: Gut Microbiota Fur Seal


tropicalis 8

text: ICBS UFRGS

text: public

text: tropicalis 8

text: subantarctic fur seal

text: Brazil

text: Arctocephalus tropicalis

text: Arctocephalus tropicalis

text: Male

text: Gut Microbiota Fur Seal

characteristic: title


tropicalis 9

characteristic: ENA-LAST-UPDATE

text: ICBS UFRGS

text: public

text: tropicalis 9

text: subantarctic fur seal

text: Brazil

text: Arctocephalus tropicalis

text: Arctocephalus tropicalis

text: Male

text: Gut Microbiota Fur Seal


tropicalis 10

text: ICBS UFRGS

text: public

text: tropicalis 10

text: subantarctic fur seal

text: Brazil

text: Arctocephalus tropicalis

text: Arctocephalus tropicalis

text: Male

characteristic: sex

text: Gut Microbiota Fur Seal


text: CENTRE FOR GEOGENETICS

text: public

text: lion

text: brain tissue from lion A

characteristic: description

text: Denmark

text: lion

characteristic: host

characteristic: isolate

text: Panthera leo

text: Panthera leo

characteristic: specimen voucher

text: brain

characteristic: tissue type


characteristic: External Id

text: CENTRE FOR GEOGENETICS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: lion

text: liver tissue from lion A

text: Denmark

characteristic: geographic location (country and/or sea)

text: lion

text: Panthera leo

text: Panthera leo

text: liver


text: CENTRE FOR GEOGENETICS

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: lion

text: brain tissue from lion B

text: Denmark

text: lion

text: Panthera leo

characteristic: organism

text: Panthera leo

text: brain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CENTRE FOR GEOGENETICS

text: public

characteristic: Submitter Id

text: lion

characteristic: common name

text: liver tissue from lion B

text: Denmark

text: lion

text: Panthera leo

text: Panthera leo

text: liver


characteristic: ENA-LAST-UPDATE

text: CENTRE FOR GEOGENETICS

text: public

text: pike-perch

text: skin from pike-perch

characteristic: description

text: Denmark

text: pike-perch

text: pike-perch 1

text: Sander lucioperca

text: Sander lucioperca

text: pike-perch 1

text: skin

characteristic: title


text: CENTRE FOR GEOGENETICS

text: public

text: pike-perch

text: skin from pike-perch

text: Denmark

text: pike-perch

characteristic: host

text: pike-perch 2

characteristic: isolate

text: Sander lucioperca

text: Sander lucioperca

text: pike-perch 2

characteristic: specimen voucher

text: skin


characteristic: External Id

text: CENTRE FOR GEOGENETICS

characteristic: INSDC center name

text: public

text: pike-perch

text: skin from pike-perch

text: Denmark

text: pike-perch

text: pike-perch 3

text: Sander lucioperca

text: Sander lucioperca

text: pike-perch 3

text: skin

characteristic: tissue type


text: CENTRE FOR GEOGENETICS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: pike-perch

text: skin from pike-perch

text: Denmark

characteristic: geographic location (country and/or sea)

text: pike-perch

text: pike-perch 4

text: Sander lucioperca

text: Sander lucioperca

text: pike-perch 4

text: skin


Echis coloratus #6

text: BANGOR UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Echis coloratus #6

tag: Namespace:BANGOR UNIVERSITY

text: Adult

characteristic: dev stage

text: Echis coloratus

characteristic: organism

text: Echis coloratus

text: Venom gland

text: E. coloratus 6


Echis coloratus #8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: BANGOR UNIVERSITY

text: public

text: Echis coloratus #8

characteristic: Submitter Id

text: Adult

text: Echis coloratus

text: Echis coloratus

text: Venom gland

text: E. coloratus 8


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:IRBV Institut de Recherche en Biologie Vegetale

characteristic: description

text: Salix purpurea

text: Salix purpurea

text: Leaves Control 1

characteristic: title


text: IRBV Institut de Recherche en Biologie Vegetale

text: public

text: Salix purpurea

text: Salix purpurea

text: Leaves Control 2