text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: United Kingdom

text: disease

text: faeces

text: Typhimurium

text: Human

characteristic: specific host


status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: Malawi

characteristic: geographic location (country and/or sea)

text: disease

characteristic: host health state

text: blood

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: organism

characteristic: pubmed id

text: Typhimurium

characteristic: serovar

text: Human

characteristic: strain

characteristic: title


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Uganda

text: disease

text: blood

text: Typhimurium

text: Human

characteristic: specific host


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Malawi

text: disease

text: CSF

text: Typhimurium

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Mozambique

text: disease

text: blood

text: Typhimurium

text: Human


text: SC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Mozambique

characteristic: geographic location (country and/or sea)

text: disease

text: faeces

text: Typhimurium

text: Human


text: SC

text: public

text: Democratic Republic of Congo

text: disease

characteristic: host health state

text: blood

characteristic: isolation source

characteristic: organism

text: Typhimurium

text: Human


text: SC

text: public

text: USA: Louisiana

text: disease

text: not known

characteristic: pubmed id

text: Typhimurium

characteristic: serovar

text: Horse

characteristic: strain


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Nigeria

text: disease

text: blood

text: Typhimurium

text: Human

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: United Kingdom

text: disease

text: not known

text: Typhimurium

text: not known

characteristic: specific host


unit: g/kg sediment

characteristic: Chemical oxygen demand (g/kg)

characteristic: ENA-CHECKLIST

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: External Id

characteristic: Fe(II)/ Total Fe

text: CME

characteristic: INSDC center name

characteristic: INSDC first public

text: public

unit: mM

characteristic: Iron in groundwater

characteristic: Nitrate in groundwater

text: FWD:AYTGGGYDTAAAGVG; REV:TACNVGGGTATCTAATCC

characteristic: PCR primers

unit: g

characteristic: Sample size

text: Genome Sequencer FLX System (454 Life Sciences)

characteristic: Sequencing method

text: Groundwater sediment

characteristic: Soil type

characteristic: Sulfate in groundwater

characteristic: Sulfide in groundwater

characteristic: Sulfide in sediment

characteristic: U(IV)/ Total U

characteristic: Uranium in groundwater

unit: mg/kg sediment

characteristic: Uranium in sediment

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW026

characteristic: description

text: 35.977481 N 84.273656 W

characteristic: geographic location (latitude and longitude)

characteristic: library reads sequenced

text: Fast soil prep kit (MoBio Inc., San Diego, CA, USA)

characteristic: nucleic acid extraction

text: sediment metagenome

characteristic: pH

text: sediment metagenome

type: has member


characteristic: Chemical oxygen demand (g/kg)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Fe(II)/ Total Fe

text: CME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Iron in groundwater

characteristic: SRA accession

text: Groundwater sediment

characteristic: Submitter Id

characteristic: collection date

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW100-1

text: 35.977481 N 84.273656 W

text: sediment metagenome

characteristic: organism

text: sediment metagenome


text: GSC, MIxS, MIMARKS

text: CME

text: public

characteristic: Nitrate in groundwater

characteristic: PCR primers

characteristic: Sample size

characteristic: Sequencing method

text: Groundwater sediment

characteristic: Soil type

characteristic: Sulfate in groundwater

characteristic: Sulfide in groundwater

characteristic: Sulfide in sediment

characteristic: U(IV)/ Total U

characteristic: Uranium in groundwater

characteristic: Uranium in sediment

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW101-1

characteristic: description

text: 35.977481 N 84.273656 W

characteristic: geographic location (latitude and longitude)

characteristic: library reads sequenced

characteristic: nucleic acid extraction

text: sediment metagenome

characteristic: pH

text: sediment metagenome


characteristic: Chemical oxygen demand (g/kg)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Fe(II)/ Total Fe

text: CME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Iron in groundwater

characteristic: SRA accession

text: Groundwater sediment

characteristic: Submitter Id

characteristic: collection date

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW105

text: 35.977481 N 84.273656 W

text: sediment metagenome

characteristic: organism

text: sediment metagenome


text: GSC, MIxS, MIMARKS

text: CME

text: public

characteristic: Nitrate in groundwater

characteristic: PCR primers

characteristic: Sample size

characteristic: Sequencing method

text: Groundwater sediment

characteristic: Soil type

characteristic: Sulfate in groundwater

characteristic: Sulfide in groundwater

characteristic: Sulfide in sediment

characteristic: U(IV)/ Total U

characteristic: Uranium in groundwater

characteristic: Uranium in sediment

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW102-4

characteristic: description

text: 35.977481 N 84.273656 W

characteristic: geographic location (latitude and longitude)

characteristic: library reads sequenced

characteristic: nucleic acid extraction

text: sediment metagenome

characteristic: pH

text: sediment metagenome


characteristic: Chemical oxygen demand (g/kg)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Fe(II)/ Total Fe

text: CME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Iron in groundwater

characteristic: SRA accession

text: Groundwater sediment

characteristic: Submitter Id

characteristic: collection date

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW102-2

text: 35.977481 N 84.273656 W

text: sediment metagenome

characteristic: organism

text: sediment metagenome


text: GSC, MIxS, MIMARKS

text: CME

text: public

characteristic: Nitrate in groundwater

characteristic: PCR primers

characteristic: Sample size

characteristic: Sequencing method

text: Groundwater sediment

characteristic: Soil type

characteristic: Sulfate in groundwater

characteristic: Sulfide in groundwater

characteristic: Sulfide in sediment

characteristic: U(IV)/ Total U

characteristic: Uranium in groundwater

characteristic: Uranium in sediment

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW100-2

characteristic: description

text: 35.977481 N 84.273656 W

characteristic: geographic location (latitude and longitude)

characteristic: library reads sequenced

characteristic: nucleic acid extraction

text: sediment metagenome

characteristic: pH

text: sediment metagenome


characteristic: Chemical oxygen demand (g/kg)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Fe(II)/ Total Fe

text: CME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Iron in groundwater

characteristic: SRA accession

text: Groundwater sediment

characteristic: Submitter Id

characteristic: collection date

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW024

text: 35.977481 N 84.273656 W

text: sediment metagenome

characteristic: organism

text: sediment metagenome


text: GSC, MIxS, MIMARKS

text: CME

text: public

characteristic: Nitrate in groundwater

characteristic: PCR primers

characteristic: Sample size

characteristic: Sequencing method

text: Groundwater sediment

characteristic: Soil type

characteristic: Sulfate in groundwater

characteristic: Sulfide in groundwater

characteristic: Sulfide in sediment

characteristic: U(IV)/ Total U

characteristic: Uranium in groundwater

characteristic: Uranium in sediment

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW101-2

characteristic: description

text: 35.977481 N 84.273656 W

characteristic: geographic location (latitude and longitude)

characteristic: library reads sequenced

characteristic: nucleic acid extraction

text: sediment metagenome

characteristic: pH

text: sediment metagenome


characteristic: Chemical oxygen demand (g/kg)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Fe(II)/ Total Fe

text: 35.977481 N 84.273656 W

characteristic: Geographical location (lat_lon)

text: CME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Iron in groundwater

characteristic: SRA accession

text: Groundwater sediment

characteristic: Submitter Id

characteristic: collection date

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW101-4

text: sediment metagenome

characteristic: organism

text: sediment metagenome


characteristic: Chemical oxygen demand (g/kg)

text: GSC, MIxS, MIMARKS

text: CME

text: public

characteristic: Nitrate in groundwater

characteristic: PCR primers

characteristic: Sample size

characteristic: Sequencing method

text: Groundwater sediment

characteristic: Soil type

characteristic: Sulfate in groundwater

characteristic: Sulfide in groundwater

characteristic: Sulfide in sediment

characteristic: U(IV)/ Total U

characteristic: Uranium in groundwater

characteristic: Uranium in sediment

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW102-1

characteristic: description

text: 35.977481 N 84.273656 W

characteristic: geographic location (latitude and longitude)

characteristic: library reads sequenced

characteristic: nucleic acid extraction

text: sediment metagenome

characteristic: pH

text: sediment metagenome


characteristic: Chemical oxygen demand (g/kg)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Fe(II)/ Total Fe

text: CME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Iron in groundwater

characteristic: SRA accession

text: Groundwater sediment

characteristic: Submitter Id

characteristic: collection date

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW101-3

text: 35.977481 N 84.273656 W

text: sediment metagenome

characteristic: organism

text: sediment metagenome


text: GSC, MIxS, MIMARKS

text: CME

text: public

characteristic: Nitrate in groundwater

characteristic: PCR primers

characteristic: Sample size

characteristic: Sequencing method

text: Groundwater sediment

characteristic: Soil type

characteristic: Sulfate in groundwater

characteristic: Sulfide in groundwater

characteristic: Sulfide in sediment

characteristic: U(IV)/ Total U

characteristic: Uranium in groundwater

characteristic: Uranium in sediment

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW100-3

characteristic: description

text: 35.977481 N 84.273656 W

characteristic: geographic location (latitude and longitude)

characteristic: library reads sequenced

characteristic: nucleic acid extraction

text: sediment metagenome

characteristic: pH

text: sediment metagenome


characteristic: Chemical oxygen demand (g/kg)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Fe(II)/ Total Fe

text: CME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Iron in groundwater

characteristic: SRA accession

text: Groundwater sediment

characteristic: Submitter Id

characteristic: collection date

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW100-4

text: 35.977481 N 84.273656 W

text: sediment metagenome

characteristic: organism

text: sediment metagenome


text: GSC, MIxS, MIMARKS

text: CME

text: public

characteristic: Nitrate in groundwater

text: FWD:AYTGGGYDTAAAGVG; REV:TACNVGGGTATCTAATCC

characteristic: PCR primers

characteristic: Sample size

characteristic: Sequencing method

text: Groundwater sediment

characteristic: Soil type

characteristic: Sulfate in groundwater

characteristic: Sulfide in groundwater

characteristic: Sulfide in sediment

characteristic: U(IV)/ Total U

characteristic: Uranium in groundwater

characteristic: Uranium in sediment

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW103

characteristic: description

text: 35.977481 N 84.273656 W

characteristic: geographic location (latitude and longitude)

characteristic: library reads sequenced

characteristic: nucleic acid extraction

text: sediment metagenome

characteristic: pH

text: sediment metagenome


characteristic: Chemical oxygen demand (g/kg)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Fe(II)/ Total Fe

text: CME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Iron in groundwater

characteristic: SRA accession

text: Genome Sequencer FLX System (454 Life Sciences)

text: Groundwater sediment

characteristic: Submitter Id

characteristic: collection date

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW102-3

text: 35.977481 N 84.273656 W

text: sediment metagenome

characteristic: organism

text: sediment metagenome


text: GSC, MIxS, MIMARKS

text: CME

text: public

characteristic: Nitrate in groundwater

characteristic: PCR primers

characteristic: Sample size

characteristic: Sequencing method

text: Groundwater sediment

characteristic: Soil type

characteristic: Sulfate in groundwater

characteristic: Sulfide in groundwater

characteristic: Sulfide in sediment

characteristic: U(IV)/ Total U

characteristic: Uranium in groundwater

characteristic: Uranium in sediment

text: Sediment sample from Oak Ridge Field Research center, at Oak Ridge Tennessee, USA. Well FW104

characteristic: description

text: 35.977481 N 84.273656 W

characteristic: geographic location (latitude and longitude)

characteristic: library reads sequenced

text: Fast soil prep kit (MoBio Inc., San Diego, CA, USA)

characteristic: nucleic acid extraction

text: sediment metagenome

characteristic: pH

text: sediment metagenome


characteristic: Batch

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Genotype

text: DKFZ-GPCF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Schmidtea mediterranea

characteristic: Organism

text: pre-pharyngeal fragment, regenerating the head

characteristic: OrganismPart

characteristic: SRA accession

text: asexual

characteristic: Sex

characteristic: StrainOrLine

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Animals were kept at 20C in Montjuic solution (1 mM CaCl2, 0.1 mM KCl, 1.6 mM NaCl, 1.2 mM NaHCO3, 0.1 mM MgCl2, 1mM MgSO in water) and fed with veal liver once per week. Asexual planarians of the species Schmidtea mediterranea were starved for one week prior to decapitation with a razor blade. Regeneration was allowed to occur for 16 different periods of time (30 min, 1, 2, 3, 4, 5, 6, 8, 10, 12, 16, 18, 24, 36, 48, 72h). A second cut anterior to the pharynx (pre-pharyngeal cut) was performed to separate the anterior regenerating part from the rest of the body. 8 planarian pre-pharyngeal pieces from similar time points were pooled (Library 1: 30 min and 1h, four animals each; Library 2: 2h and 3h, four animals each; Library 3: 4, 5, 6, and 8h, two animals each; Library 4: 10, 12, 16, and 18h, 2 animals each; Library 5: 24, 36, 48, and 72h, 2 animals each), and immediately deep-frozen. 16 non-regenerating pieces served as two independent biological replicates (8 animals each; Library 6 and 7). Samples were processed in two batches: material from control Library 6 was processed together with Libraries 1-3, while contrl Library 7 was processed together with Libraries 4 and 5. Total RNA was extracted from planarian fragments using Trizol. 0.5 microgram of polyA RNA was isolated from total RNA using the MicroPoly(A)Purist kit (Ambion), fragmented and precipitated. First strand cDNA was synthesized using SuperScript II (Invitrogen) and the second strand was added using RNAseH and DNA Polymerase I. cDNA was purified with the QIAquick PCR purification kit (QIAGEN) and ends were repaired with Klenow DNA polymerase. The 3 prime ends were adynlated with Klenow exo (3 prime to 5 prime exo minus) enzyme and ligated to the sequencing adapters. cDNA templates were separated by Agarose gel electrophoresis and ca. 200 bp sequences were selected. Templates for sequencing were PCR amplified using Phusion DNA polymerase (Finnzymes Oy) and purified with the QIAquick PCR purification kit (QIAGEN).

text: Schmidtea mediterranea

characteristic: organism

text: Schmidtea mediterranea

characteristic: title


characteristic: Batch

characteristic: ENA-FIRST-PUBLIC

text: DKFZ-GPCF

text: public

text: Schmidtea mediterranea

text: asexual

text: ArrayExpress

text: Protocols: Animals were kept at 20C in Montjuic solution (1 mM CaCl2, 0.1 mM KCl, 1.6 mM NaCl, 1.2 mM NaHCO3, 0.1 mM MgCl2, 1mM MgSO in water) and fed with veal liver once per week. For each sample, 5 planarian trunks were dissected from heads and tails. For control samples, samples were frozen immediately after dissection. The 1 and 6 hr samples were generated the following way: At timepoint 0, the head and the tail was amputated, so there were now 3 pieces: one animal => head + trunk + tail. These 3 pieces were kept in the same culture vessel together and all allowed to regenerate. Each piece started to regenerate at each wound. After 1 hr or 6 hrs, all three pieces (including whatever regenerated in this short period of time) were extracted together (head + trunk + tail). . Total RNA was extracted using TRIzol (Invitrogen). Strand-specific sequencing libraries were prepared from polyA RNA selected material using Applied Biosystems Whole Transcriptome Library Preparation protocol (Part number 4409491 Rev. C). In brief, 1 mg of polyA RNA was isolated using the MicroPoly(A)Purist kit (Ambion), fragmented using RNAse III (Applied Biosystems) and column purified. SOLiD sequencing adapters were ligated to the RNA RNA using components from the SOLiD Small RNA Expression Kit (Applied Biosystems). Afterwards, the RNA was reverse transcribed using ArrayScript Reverse Transcriptase and cDNA purified using the MinElute PCR purification kit (Qiagen). cDNA fragments were separated using by electropheresis on Novex 6% TBE-Urea gels, stained with SYBR Gold nucleic acid gel stain and sequences between 100-200 nt were selected. Afterwards, fragments were PCR amplified using AmpliTaq for 15 cycles to obtain templates for emulsion PCR and sequencing.

characteristic: description

text: Schmidtea mediterranea

text: Schmidtea mediterranea


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Genotype

text: DKFZ-GPCF

text: public

text: Schmidtea mediterranea

text: head, trunk and tail fragments

text: asexual

text: ArrayExpress

text: Schmidtea mediterranea

text: Schmidtea mediterranea


name: Triticum aestivum cv. Chinese spring sample

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: bread wheat

characteristic: common name

text: Chinese spring

characteristic: cultivar

text: Triticum aestivum genomic DNA

text: line 42

characteristic: line

text: Triticum aestivum

text: single seed descent line from original Sears euploid line

characteristic: origin

text: Triticum aestivum

text: Triticum aestivum genomic DNA


Bora-Bora larvae

text: CNRS

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bora-Bora larvae

characteristic: Submitter Id

text: yellow fever mosquito

text: Aedes aegypti, laboratory strain Bora-Bora susceptible to insecticides, fourth stage 5 days-old larvae of mixed sexes, grown in standard insectary conditions, total RNA isolated from 3 batches of 30 fresh larvae

text: Aedes aegypti

characteristic: resistance to insecticide

text: Aedes aegypti


Litox larvae

text: CNRS

text: public

text: Litox larvae

text: yellow fever mosquito

text: Aedes aegypti, laboratory-selected strain resistant to Bti toxins, fourth stage 5 days-old larvae of mixed sexes, total RNA isolated from 3 batches of 30 fresh larvae

text: Aedes aegypti

characteristic: organism

text: Bti

text: Aedes aegypti


text: Estonia

characteristic: Country

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: RUS

characteristic: STRAIN

text: Mycobacterium

characteristic: genus

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: title

type: AMR curated data - CABBAGE

value: isoniazid

value: resistant

value: Mycobacterium tuberculosis

value: pyrazinamide

value: susceptible

value: streptomycin

value: rifampin

value: ethambutol


characteristic: External Id

text: MPIMG

characteristic: INSDC center name

text: public

text: human

text: CEU Human NA12878

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Human NA12878


text: MPI-EVA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: unclassified sequences

text: unclassified sequences


text: David Walliker, University of Edinburgh

characteristic: BioSourceProvider

characteristic: ENA-LAST-UPDATE

characteristic: Genotype

text: SC

text: public

text: Plasmodium yoelii

characteristic: Organism

text: YM

characteristic: StrainOrLine

text: ArrayExpress

characteristic: broker name

text: Protocols: Groups of 5 Balb/c mice were infected i.v. on day 0 with either 200, 1000, or 5000 WT or PY01365-KO parasitized erythrocytes. Blood smears from each mouse were made daily from D3, stained with Giemsa's reagent and infected cells counted to monitor the course of infection. Erythrocytes containing late stage parasites, were harvested at 20 to 25% parasitaemia and schizonts were purified by centrifugation for 25 min at 600 g at room temperature (RT) on a 55% Nycodenz (Nycoprep) cushion (NYCOMED Pharma AS). 5_107 schizonts were mixed with 90 ul AMAXA nucleofactor T-cell solution (plus supplements) and 5 ug of targeting construct DNA was added. These parasites were transfected using AMAXA Nucleofector programme U33. Immediately, 100 ul of RPMI 1640 medium containing 20% foetal calf serum (FCS) was added to the transfected parasites and the suspension injected intravenously (i.v.) into the tail vein of a single mouse. Electroporation of parasites with targeting construct and injection into individual mice was carried out twice independently using the above conditions. Pyrimethamine-resistant parasites were verified by PCR and Southern blot analysis and the transgenic parasite line was cloned by limiting dilution. Parasites were purified using a MACS type-D depletion column with a SuperMACS II magnetic separator (Miltenyi Biotec GmbH). Total RNA was prepared from leukocyte-depleted, Percoll-purified late stage WT and PY01365-KO parasitized erythrocytes using Trizol (Invitrogen Life Technologies). RNA samples were first treated with RNase-Free DNase I (Quiagen) and cleaned up using RNeasy MiniElute to remove contaminating gDNA. RNA of both samples was depleted of ribosomal RNAs with exonuclease and and libraries were created using the Illumina RNA-seq protocol.

text: Plasmodium yoelii

text: Plasmodium yoelii


text: David Walliker, University of Edinburgh

characteristic: GeneticModification

text: py235ebp-1 knock out

text: SC

text: public

characteristic: INSDC status

text: Plasmodium yoelii

characteristic: SRA accession

text: YM

characteristic: Submitter Id

text: ArrayExpress

text: Plasmodium yoelii

characteristic: organism

text: Plasmodium yoelii


E-MTAB-550:3.1DayTG_tachyzoites_RNA 1

text: Human Foreskin Fibroblasts

characteristic: CellLine

text: 3 days post infection

characteristic: DevelopmentalStage

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Toxoplasma gondii

text: E-MTAB-550:3.1DayTG_tachyzoites_RNA 1

text: ArrayExpress

text: Protocols: Toxoplasma gondii-VEG strain tachyzoites were maintained as described previously (Cohen et al. 2002). Briefly, parasites were cultured by twice weekly passage into African Green Monkey Kidney Fibroblasts (Vero cells) using Iscove's Modified Dulbecco's Medium (IMDM, Lonza, Walkersville, USA) supplemented with 5% (v/v) foetal calf serum (FCS, Labtech international, UK) and 100Uml-1 penicillin/100ugml-1 streptomycin (Sigma-Aldrich). Parasites were harvested 2, 3, 4 or 6 days post-infection in aliquots of 108 tachyzoites and stored at -20oC either resuspended in TRI Reagent (Sigma-Aldrich) for RNA extraction or as pellets for proteomics. Further T.gondii-VEG were maintained in Human Foreskin Fibroblasts by twice weekly passage into 70-90% confluent cell cultures, maintained in Dulbecco's Modified Eagle's Medium (DMEM, Sigma-Aldrich) supplemented with 2 mM L-Glutamine (Sigma-Aldrich), 10% (v/v) FCS and 100Uml-1 penicillin/100ugml-1 streptomycin. Otherwise cultivation was identical to parasites grown in Vero cells. Cohen, A.M., Rumpel, K., Coombs, G.H. & Wastling, J.M. (2002) 'Characterisation of global protein expression by two-dimensional electrophoresis and mass spectrometry: proteomics of Toxoplasma gondii', Int J Parasitol, vol. 32, no. 1, pp. 39-51. RNA was extracted from Trizol with chloroform (as per the Invitrogen protocol), ethanol precipitated and then resuspended in RNAse free water. Poly A+ mRNA was purified from total RNA using oligo dT dyna bead selection followed by metal ion hydrolysis fragmentation with the Ambion RNA fragmentation kit. 1st strand cDNA is synthesized using randomly primed oligos followed by 2nd strand synthesis to produce dscDNA. This was followed by end repair with T4 and Klenow DNA polymerases and T4 polynucleotide kinase to blunt-end the DNA fragments. A single 3' A nucleotide was added to the repaired ends using Klenow exo- and dATP to deter concatemerization of templates, limit adapter dimers and increase the efficiency of adapter ligation. Adapters were then ligated (containing primer sites for sequencing). Ligated fragments were run on an agarose gel, size selected for 200-250bp inserts and DNA extracted as per Qiagen gel extraction kit protocol but with dissolution of gel slices at room temperature (rather than 50oC) to avoid heat induced bias. Libraries were then amplified by PCR to enrich for properly ligated template strands, to generate enough DNA and to add primers for flowcell surface annealing followed by a clean up with AMPure SPRI beads. These libraries were quantified using Agilent Bioanalyser chip and Kapa Illumina SYBR Fast qPCR kit.

text: Toxoplasma gondii

text: Toxoplasma gondii

text: 3.1DayTG_tachyzoites_RNA 1

characteristic: title


E-MTAB-550:4Day_TG_tachyzoites_RNA 1

text: Human Foreskin Fibroblasts

text: 4 days post infection

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Toxoplasma gondii

text: E-MTAB-550:4Day_TG_tachyzoites_RNA 1

text: ArrayExpress

characteristic: description

text: Toxoplasma gondii

text: Toxoplasma gondii

text: 4Day_TG_tachyzoites_RNA 1


E-MTAB-550:2.1DayTG_tachyzoites_RNA 1

text: Human Foreskin Fibroblasts

text: 2 days post infection

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

text: Toxoplasma gondii

text: E-MTAB-550:2.1DayTG_tachyzoites_RNA 1

text: ArrayExpress

text: Toxoplasma gondii

text: Toxoplasma gondii

text: 2.1DayTG_tachyzoites_RNA 1


E-MTAB-550:4.1DayTG_tachyzoites_RNA 1

text: Human Foreskin Fibroblasts

text: 4 days post infection

text: SC

text: public

text: Toxoplasma gondii

characteristic: Organism

text: E-MTAB-550:4.1DayTG_tachyzoites_RNA 1

text: ArrayExpress

text: Toxoplasma gondii

text: Toxoplasma gondii

text: 4.1DayTG_tachyzoites_RNA 1


text: Vero cells

text: 4 days post infection

text: SC

text: public

text: Toxoplasma gondii

text: ArrayExpress

characteristic: broker name

text: Toxoplasma gondii

text: Toxoplasma gondii


text: Vero cells

text: 6 days post infection

text: SC

text: public

text: Toxoplasma gondii

text: ArrayExpress

text: Toxoplasma gondii

text: Toxoplasma gondii


E-MTAB-550:2DayTG_tachyzoites_RNA 1

text: Human Foreskin Fibroblasts

text: 2 days post infection

text: SC

text: public

text: Toxoplasma gondii

text: E-MTAB-550:2DayTG_tachyzoites_RNA 1

text: ArrayExpress

text: Toxoplasma gondii

text: Toxoplasma gondii

text: 2DayTG_tachyzoites_RNA 1


E-MTAB-550:6.1DayTG_tachyzoites_RNA 1

text: Human Foreskin Fibroblasts

text: 6 days post infection

text: SC

text: public

text: Toxoplasma gondii

text: E-MTAB-550:6.1DayTG_tachyzoites_RNA 1

text: ArrayExpress

text: Toxoplasma gondii

text: Toxoplasma gondii

text: 6.1DayTG_tachyzoites_RNA 1


text: Vero cells

text: 3 days post infection

text: SC

text: public

text: Toxoplasma gondii

text: ArrayExpress

text: Toxoplasma gondii

text: Toxoplasma gondii


E-MTAB-550:6DayTG_tachyzoites_RNA 1

text: Human Foreskin Fibroblasts

text: 6 days post infection

text: SC

text: public

text: Toxoplasma gondii

text: E-MTAB-550:6DayTG_tachyzoites_RNA 1

text: ArrayExpress

text: Toxoplasma gondii

text: Toxoplasma gondii

text: 6DayTG_tachyzoites_RNA 1


E-MTAB-550:3DayTG_tachyzoites_RNA 1

text: Human Foreskin Fibroblasts

text: 3 days post infection

text: SC

text: public

text: Toxoplasma gondii

text: E-MTAB-550:3DayTG_tachyzoites_RNA 1

text: ArrayExpress

text: Toxoplasma gondii

text: Toxoplasma gondii

text: 3DayTG_tachyzoites_RNA 1


text: rpoN::cat mutant

characteristic: Genotype

text: SC

text: public

text: Campylobacter jejuni

characteristic: StrainOrLine

text: ArrayExpress

text: Protocols: C. jejuni strains were cultured for 48 hours on MH blood agar plates with antibiotics added as appropriate. Bacterial lawns were harvested in 1 ml BHI broth, 50 ul of which was inoculated into 10 ml BHI broth in a 50 ml Falcon centrifuge tube with a loosened cap, and grown for 16 h at 42C under microaerobic conditions with agitation at 150 rpm to generate a starter culture. The optical density at 600nm (OD600) of starter cultures was taken using a 6305 UV/Visible Spectrophotometer (Jenway, Dunmow, U.K.). Starter cultures were diluted appropriately in BHI broth and used to inoculate 10 ml of BHI broth containing 10 ug/ml trimethoprim in a 50 ml falcon tube (previously equilibrated at 42C in microaerobic conditions for 16 h) to a calculated OD600 of 0.00002. Cultures were grown at 42C under microaerobic conditions with shaking at 150 rpm for 24 h. Growth was monitored by recording OD600, and by determining viable colony forming units (CFU/ml) by serial 10-fold dilution of cultures in BHI broth and plating onto MH agar. Plates were incubated microaerobically at 42C for 48 h before colonies were counted. C. jejuni cultures were fixed with 2 volumes of RNA protect Bacteria (Qiagen) and harvested. RNA was isolated from the pellet using the SV RNA isolation kit (Promega) according to the manufacturers instructions. 23S and 16S rRNAs were depleted using a MicrobExpress kit (Ambion). Genomic DNA was removed with two digestions, using Amplification grade DNAse I (Invitrogen), to below PCR-detectable levels. RNA was reverse transcribed using random primers (Invitrogen) and Superscript III (Invitrogen) at 45C for 3 h and denatured at 70C for 15 min. leuB (using primers QJAW084 5 GCAAGTATAGATGCTTATGGAGTG 3 and QJAW085 5 CTCTTTCAGGTCTTTGATCTATGG 3), aroA (using primers QJAW092 5 GCTTTGGCTAAGGGTAAATCTAGT 3 and QJAW093 5 ATCAAGTTCTCTAGCTTCAACACC 3), lpxD (using primers QJAW104 5 GGAGCTTATATAGGCGATAATGTC 3 and QJAW105 5 CAAAACCGTCACTTCCTATTACAC 3) and guaB (using primers QJAW108 5 GGGTGTTGATGTTGTTGTGC 3 and QJAW109 5 GGCGATATTTCCTGCGATAA 3) were used as targets for a PCR as a positive control for reverse transcription.

text: Campylobacter jejuni

text: Campylobacter jejuni

text: rpoN


text: SC

text: public

characteristic: INSDC status

text: Campylobacter jejuni

characteristic: SRA accession

text: ArrayExpress

text: Campylobacter jejuni

text: Campylobacter jejuni

text: wt


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: Submitter Id

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not known

characteristic: host health state

text: not known

text: Yersinia intermedia

characteristic: organism

text: Yersinia intermedia

characteristic: serovar

text: cattle

characteristic: strain

text: Yersinia intermedia; Yersinia intermedia; Yersinia intermedia


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Escherichia coli

text: K-12 substr. MG1655

text: E-MTAB-387:E_coli_K12_MG1655_RNAseq_LB_Transition_to_stationary

text: ArrayExpress

text: Protocols: The E. coliK-12 MG1655 bacterial strains used in this work are the following: E. coli MG1655 (F- lambda- ilvG- rfb-50 rph-1). Luria-Bertani (0.5% NaCl) broth and agar (15 g/liter) were used for routine growth. To prepare cells for RNA extraction, 100 ml of fresh LB was inoculated 1:200 from an overnight culture in a 250 ml flask and incubated with shaking at 180 r.p.m. in a New Brunswick C76 waterbath at 37¡C. Two biological replicates were performed for each strain and samples were taken at early-exponential, mid-exponential, transition-to-stationary and stationary phase. The cells were pelleted by centrifugation (10000 g, 10 min, 4¡C), washed in 1xPBS and pellets were snap-frozen and stored at _80¡C until required. RNA was extracted using Trizol Reagent (Invitrogen) according to the manufacturer's protocol until the chloroform extraction step. The aqueous phase was then loaded onto mirVanaTM miRNA Isolation kit (Ambion Inc.) columns and washed according to the manufacturer's protocol. Total RNA was eluted in 50µl of RNAase free water. The concentration was then determined using a Nanodrop ND-1000 machine (NanoDrop Technologies), and RNA quality was tested by visualization on agarose gels and by Agilent 2100 Bioanalyser (Agilent Technologies).

text: Escherichia coli

text: Escherichia coli

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: Escherichia coli

characteristic: Organism

text: K-12 substr. MG1655

text: E-MTAB-387:E_coli_K12_MG1655_RNAseq_LB_Early_exponential

text: ArrayExpress

characteristic: broker name

characteristic: description

text: Escherichia coli

text: Escherichia coli


text: YORK

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sinorhizobium medicae

text: Sinorhizobium medicae

text: sinorhizotest


DenisovaTooth

text: Denisova 4 molar

characteristic: Bone ID

text: MPI-EVA

text: public

text: DenisovaTooth

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: Denisova 4 molar

characteristic: collection date

text: Denisova hominin

characteristic: common name

text: Denisova Tooth

text: Russian Federation:Altaysky Kray,Soloneshensky Rayon

characteristic: geographic location (country and/or sea,region)

text: 1.7 +/- 0.3

characteristic: geographic location (depth)

text: 51.398 N 84.675 E

characteristic: geographic location (latitude and longitude)

text: Taq Polymerase, Phusion Polymerase

characteristic: nucleic acid amplification

text: silica extraction

characteristic: nucleic acid extraction

text: Homo sapiens ssp. Denisova

text: Homo sapiens ssp. Denisova

text: Denisova Tooth


text: middle-aged, rosette-stage

characteristic: Age

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AWCGS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Pachycladon enysii

characteristic: Population

text: ArrayExpress

text: Protocols: RNA from three native populations of P. enysii and P. fastigiatum was isolated as described in Voelckel et al. 2008. Replicate RNAs of each species were pooled and underwent sample preparation according to manufacturer instructions (DGE-Tag Profiling DpnII Sample Prep Kit, Illumina Inc., San Diego, USA). mRNA was isolated from total RNA and DpnII-restricted to generate 16 bp tags. DpnII-anchored tags were then enriched for sequencing. After tag library construction, libraries were titrated resulting in three flow cell lanes being loaded for each species.

text: Pachycladon enysii

characteristic: organism

text: Pachycladon enysii

text: 15 leaves

characteristic: tissue

characteristic: title


text: middle-aged, rosette-stage

text: AWCGS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Pachycladon enysii

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: description

text: Pachycladon enysii

text: Pachycladon enysii

text: 16 leaves


text: middle-aged, rosette-stage

characteristic: Age

text: AWCGS

text: public

text: Pachycladon fastigiatum

text: ArrayExpress

text: Pachycladon fastigiatum

text: Pachycladon fastigiatum

text: 14 leaves


text: middle-aged, rosette-stage

characteristic: ENA-FIRST-PUBLIC

text: AWCGS

text: public

text: Pachycladon fastigiatum

text: ArrayExpress

text: Pachycladon fastigiatum

text: Pachycladon fastigiatum

text: 16 leaves


text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


HPmRNA2a 1

characteristic: External Id

text: SC

text: public

text: HPmRNA2a 1

text: human

text: Homo sapiens

text: Homo sapiens


mRNAS2_2 1

text: SC

characteristic: INSDC center name

text: public

text: mRNAS2_2 1

text: human

text: Homo sapiens

text: Homo sapiens


mRNAS2_1 1

text: SC

characteristic: INSDC first public

text: public

text: mRNAS2_1 1

text: human

text: Homo sapiens

text: Homo sapiens


mRNAS2_7 1

text: SC

text: public

text: mRNAS2_7 1

text: human

text: Homo sapiens

text: Homo sapiens


mRNAS2_5 1

text: SC

text: public

text: mRNAS2_5 1

text: human

text: Homo sapiens

text: Homo sapiens


HPmRNA 1

text: SC

text: public

text: HPmRNA 1

text: human

text: Homo sapiens

text: Homo sapiens


HP_S1_mRNA_250pM 1

text: SC

text: public

text: HP_S1_mRNA_250pM 1

text: human

text: Homo sapiens

text: Homo sapiens


mRNAS2_6 1

text: SC

text: public

text: mRNAS2_6 1

text: human

text: Homo sapiens

text: Homo sapiens


mRNAS2_4 1

text: SC

text: public

text: mRNAS2_4 1

text: human

text: Homo sapiens

text: Homo sapiens


mRNAS2_3 1

text: SC

text: public

text: mRNAS2_3 1

text: human

text: Homo sapiens

text: Homo sapiens


text: TGAC

text: public

text: Sample from Lactobacillus reuteri ATCC 53608

text: Lactobacillus reuteri ATCC 53608

text: Lactobacillus reuteri ATCC 53608


text: EMBL

text: public

text: subject= 13; diet= r40-10; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 14; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 11; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 12; diet= r40-10; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 9; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 10; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 7; diet= r40-10; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 8; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 9; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 10; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 15; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 16; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 14; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 17; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 11; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 17; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 16; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 15; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 14; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 1; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 1; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 19; diet= r40-10; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 18; diet= r40-10; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 4; diet= r40-10; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 3; diet= r40-10; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 1; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 16; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 3; diet= r40-10; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 18; diet= r40-10; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 17; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 19; diet= r40-10; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 19; diet= r40-10; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 3; diet= r40-10; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 1; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 5; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 20; diet= r40-10; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 6; diet= r40-10; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 5; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 20; diet= r40-10; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 18; diet= r40-10; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 17; diet= r10-40; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 20; diet= r40-10; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 19; diet= r40-10; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 16; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 4; diet= r40-10; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 3; diet= r40-10; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 20; diet= r40-10; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 8; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 15; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 10; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 11; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 4; diet= r40-10; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 5; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 6; diet= r40-10; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 4; diet= r40-10; collect_point= 5

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 6; diet= r40-10; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 7; diet= r40-10; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 8; diet= r10-40; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 7; diet= r40-10; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 12; diet= r40-10; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 13; diet= r40-10; collect_point= 2

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 12; diet= r40-10; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 13; diet= r40-10; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 7; diet= r40-10; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 8; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 5; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 6; diet= r40-10; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 11; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 12; diet= r40-10; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 9; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 10; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 13; diet= r40-10; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 14; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 18; diet= r40-10; collect_point= 4

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 15; diet= r10-40; collect_point= 3

text: environmental samples

text: environmental samples


text: EMBL

text: public

text: subject= 9; diet= r10-40; collect_point= 2

text: environmental samples

text: environmental samples


text: TGAC

text: public

text: Clostridium botulinum A5(B') str. H04402 065


text: Conidia asexual spores

characteristic: Developmental Stage

characteristic: ENA-LAST-UPDATE

characteristic: Host Taxonomy ID

text: Hordeum vulgare subsp. vulgare cv. Golden Promise

characteristic: Host organism

text: ICL-CFB

text: public

text: Conidia (asexual spores) were collected from infected barley by vacuum onto Millipore filters; conidia were not older than 24 hours.

text: Blumeria graminis f. sp. hordei DH14

text: Blumeria graminis f. sp. hordei DH14


characteristic: INSDC last update

text: public

text: A/J

characteristic: Strain

text: house mouse

text: Nimblegen Sequence Capture of Genomic Mus musculus (A/J) DNA. Capture targets designed on a 6.2Mbp region of Mmu:17 between genomic positions: 30637692-36837814bp

text: Mus musculus

characteristic: organism

text: Mus musculus


text: public

characteristic: INSDC status

characteristic: SRA accession

text: BALBc

text: house mouse

text: Nimblegen Sequence Capture of Genomic Mus musculus (BALBc) DNA. Capture targets designed on a 6.2Mbp region of Mmu:17 between genomic positions: 30637692-36837814bp

text: Mus musculus

text: Mus musculus


text: public

characteristic: Submitter Id

text: house mouse

text: Nimblegen Sequence Capture of Genomic Mus musculus (C3H/HeJ) DNA. Capture targets designed on a 6.2Mbp region of Mmu:17 between genomic positions: 30637692-36837814bp

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Nimblegen Sequence Capture of Genomic Mus musculus (129P3J) DNA. Capture targets designed on a 6.2Mbp region of Mmu:17 between genomic positions: 30637692-36837814bp

characteristic: description

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


Chd7 ChIP

text: BCCS

text: public

text: Chd7 ChIP

text: house mouse

text: Neural stem cell culturing and derivation: Wild-type NSCs were cultured using N2B27 medium (Stem Cell Sciences) supplemented with EGF and FGF (both from Peprotech). For large scale chromatin preparation, 108 NSCs were crosslinked with 2 mM disuccinimidyl glutarate (Thermo Fisher Scientific) and 1% formaldehyde, nuclei were isolated in 50 mM Tris-Cl pH 8.0, 1 mM EDTA, 1%SDS, lysed in pre-IP buffer (10 mM Tris, 10 mM NaCl, 3mM MgCl2, 1 mM CaCl2). Chromatin was prepared and ChIP performed according to the Millipore on-line protocol using 15 mg of antibody against Chd7 antibody (ab-31824, Abcam).

text: Mus musculus

text: Mus musculus


Sox2 ChIP sample

text: BCCS

text: public

text: Sox2 ChIP sample

text: house mouse

text: Neural stem cell culturing and derivation: Wild-type NSCs were cultured using N2B27 medium (Stem Cell Sciences) supplemented with EGF and FGF (both from Peprotech). For large scale chromatin preparation, 108 NSCs were crosslinked with 2 mM disuccinimidyl glutarate (Thermo Fisher Scientific) and 1% formaldehyde, as described10, nuclei were isolated in 50 mM Tris-Cl pH 8.0, 1 mM EDTA, 1%SDS, lysed in pre-IP buffer (10 mM Tris, 10 mM NaCl, 3mM MgCl2, 1 mM CaCl2). Chromatin was prepared and ChIP performed according to the Millipore on-line protocol using 15 mg of antibody against Sox2 (Y17, sc-17320).

text: Mus musculus

text: Mus musculus

text: Immunoprecipitation of Sox2 in mouse neural stem cells

characteristic: title


Sox2 control sample

text: BCCS

text: public

text: Sox2 control sample

text: house mouse

text: Neural stem cell culturing and derivation: Wild-type NSCs were cultured using N2B27 medium (Stem Cell Sciences) supplemented with EGF and FGF (both from Peprotech). For large scale chromatin preparation, 108 NSCs were crosslinked with 2 mM disuccinimidyl glutarate (Thermo Fisher Scientific) and 1% formaldehyde, as described10, nuclei were isolated in 50 mM Tris-Cl pH 8.0, 1 mM EDTA, 1%SDS, lysed in pre-IP buffer (10 mM Tris, 10 mM NaCl, 3mM MgCl2, 1 mM CaCl2). Chromatin was prepared and ChIP performed according to the Millipore on-line protocol using 15 mg of antibody against goat IgG (sc-2028) as control.

text: Mus musculus

text: Mus musculus


HVVBetzes

text: flow sorted chromosomes

characteristic: DNA Source

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

text: public

text: HVVBetzes

text: GABIPD

characteristic: broker name

text: domesticated barley

text: Betzes

characteristic: cultivar

text: Betzes

characteristic: genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp vulgare cv Betzes


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Trypanosoma vivax

characteristic: Organism

characteristic: StrainOrLine

text: ArrayExpress

text: Protocols: Trypanosoma vivax Y486 was grown from stabilate in BALB/c mice immunosuppressed with cyclophosphamide (250 mg.kg-1) and was amplified at patent parasitaemia in three immunosuppressed mice, from which whole blood was collected. The blood was treated with the erythrocyte lysis buffer (EL; QIAGEN), following the manufacturer's instructions, and RNA was isolated from the pellet using the RNeasy mini kit protocol (QIAGEN). Poly A+ mRNA was purified from total RNA using oligo dT dyna bead selection followed by metal ion hydrolysis fragmentation with the Ambion RNA fragmentation kit. 1st strand cDNA was synthesized using randomly primed oligos followed by 2nd strand synthesis to produce dscDNA. This was followed by end repair with T4 and Klenow DNA polymerases and T4 polynucleotide kinase to blunt-end the DNA fragments. A single 3' A nucleotide was added to the repaired ends using Klenow exo- and dATP to deter concatemerization of templates, limit adapter dimers and increase the efficiency of adapter ligation. Adapters were then ligated (containing primer sites for sequencing). Ligated fragments were run on an agarose gel, size selected for 275-325bp inserts and DNA extracted as per Qiagen gel extraction kit protocol but with dissolution of gel slices at room temperature (rather than 50oC) to avoid heat induced bias. Libraries were then amplified by PCR to enrich for properly ligated template strands, to generate enough DNA and to add primers for flowcell surface annealing followed by a clean up with AMPure SPRI beads. These libraries were quantified using Agilent Bioanalyser chip and Kapa Illumina SYBR Fast qPCR kit.

text: Trypanosoma vivax

text: Trypanosoma vivax


text: d15 Oocytes

characteristic: Cell Type

characteristic: ENA-LAST-UPDATE

text: BI-UK

characteristic: INSDC last update

text: public

text: house mouse

characteristic: common name

text: ChIP-Seq H3K4me3 - IP2

text: Mus musculus

text: Mus musculus


text: d15 Oocytes

text: BI-UK

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: ChIP-Seq H3K4me3 - IP1

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Sperm

characteristic: ENA-FIRST-PUBLIC

text: BI-UK

text: public

text: house mouse

text: RRBS Sperm-Rep1

characteristic: description

text: Mus musculus

text: Mus musculus


text: E3.5 blastocysts

text: BI-UK

text: public

text: house mouse

text: RRBS Blasto-Rep2

text: Mus musculus

text: Mus musculus


text: E3.5 Blastocysts

text: BI-UK

text: public

text: house mouse

text: RRBS Blasto-Rep1

text: Mus musculus

text: Mus musculus


text: MII Oocytes

text: BI-UK

text: public

text: house mouse

text: RRBS MII-Rep1

text: Mus musculus

text: Mus musculus


text: d20 GV oocytes

text: BI-UK

text: public

text: house mouse

text: RRBS GV-Rep2

text: Mus musculus

text: Mus musculus


text: d20 GV oocytes

text: BI-UK

text: public

text: house mouse

text: RRBS GV-Rep1

text: Mus musculus

text: Mus musculus


text: d5 oocytes

text: BI-UK

text: public

text: house mouse

text: RRBS d5-Rep2

text: Mus musculus

text: Mus musculus


text: d5 oocytes

text: BI-UK

text: public

text: house mouse

text: RRBS d5-Rep1

text: Mus musculus

text: Mus musculus


text: d20 GV Oocytes

text: BI-UK

text: public

text: house mouse

text: RRBS 3aWT-Rep1

text: Mus musculus

text: Mus musculus


text: Sperm

text: BI-UK

text: public

text: house mouse

text: RRBS Sperm-Rep2

text: Mus musculus

text: Mus musculus


text: FG-GV Oocytes

text: BI-UK

text: public

text: house mouse

text: RNA-Seq FG-GV

text: Mus musculus

text: Mus musculus


text: d15 Oocytes

text: BI-UK

text: public

text: house mouse

text: ChIP-Seq H3K4me3 input

text: Mus musculus

text: Mus musculus


text: d20 GV Oocytes

text: Dnmt3a KO

characteristic: Genotype

text: BI-UK

text: public

text: house mouse

text: RRBS 3aKO-Rep1

text: Mus musculus

text: Mus musculus


text: d20 GV Oocytes

text: Dnmt3a KO

text: BI-UK

text: public

text: house mouse

text: RRBS 3aKO-Rep2

text: Mus musculus

text: Mus musculus


text: d20 Oocytes

text: BI-UK

text: public

text: house mouse

text: RRBS 3LWT-Rep1

text: Mus musculus

text: Mus musculus


text: d20 GV Oocytes

text: BI-UK

text: public

text: house mouse

text: RRBS 3LWT-Rep2

text: Mus musculus

text: Mus musculus


text: d20 GV Oocytes

text: Dnmt3L KO

text: BI-UK

text: public

text: house mouse

text: RRBS 3LKO-Rep1

text: Mus musculus

text: Mus musculus


text: d20 GV Oocytes

text: Dnmt3L KO

text: BI-UK

text: public

text: house mouse

text: RRBS 3LKO-Rep2

text: Mus musculus

text: Mus musculus


text: d10 Oocytes

text: BI-UK

text: public

text: house mouse

text: RNA-Seq d10-SR

text: Mus musculus

text: Mus musculus


text: d10 Oocytes

text: BI-UK

text: public

text: house mouse

text: RNA-Seq d10-PE

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: Citrobacter rodentium

text: ArrayExpress

characteristic: broker name

text: Protocols: Citrobacter rodentium strains were grown at 37 degrees C in Luria-Bertani (LB) medium. The whole genome transcriptome of Citrobacter rodentium ICC169-476 was sequenced using Illumina sequencing technology as previously described (Croucher NJ et al. (2009) A simple method for directional transcriptome sequencing using Illumina technology. Nucleic Acids Res 37: e148). Removal of genomic DNA from the RNA sample and subsequent successful cDNA generation was confirmed by PCR using the four primer pairs NKP125-132 that generate amplicons internal to C. rodentium housekeeping genes.

text: Citrobacter rodentium

text: Citrobacter rodentium

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: Age

text: Schistosomiasis Research Group, Division of Microbiology and Parasitology, Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QP, United Kingdom

characteristic: BioSourceProvider

characteristic: BioSourceType

text: larva

characteristic: DevelopmentalStage

text: SC

characteristic: INSDC first public

text: public

text: Schistosoma mansoni

characteristic: Organism

text: mixed

characteristic: Sex

text: puerto rican

text: hours

characteristic: TimeUnit

text: ArrayExpress

text: Protocols: A Peurto Rican strain of S. mansoni was used in this study. Mixed-sex worms (including female worms) were perfused from percutaneously infected Golden Syrian hamsters challenged 7-weeks earlier with cercariae and provided by Dr. Phil LoVerde (University of Texas, San Antonio, Texas, U.S.). Cercariae were shed from Biomphalaria glabrata intermediate snail hosts. Mechanically transformed schistosomula were prepared by mechanical transformation of cercariae and cultured at 37C in DMEM (Sigma, UK) supplemented with 10% foetal calf serum, 2 mM L-glutamine, and 100 ug/ml penicillin/streptomycin in an atmosphere of 5% CO2 for 3hr or 24hr. Skin transformed schistosomula were prepared by allowing cercariae to penetrate a layer of freshly excised mouse skin. After penetration, schistosomula were cultured at 37C in DMEM (Sigma, UK) supplemented with 10% foetal calf serum, 2 mM L-glutamine, and 100 ug/ml penicillin/streptomycin in an atmosphere of 5% CO2 for 24hr. Cercarial tails were obtained using the same procedure as for mechanically transformed schistosomula. (Parameters: time unit = seconds, temperature unit = C) S. mansoni total RNA was extracted from parasites homogenised in TRIzol reagent (Invitrogen UK) using an Ultra-Turrax T10 dispersing tool (IKA-Labortechnik, Janke & Kunkel, GmbH & Co). Cercariae total RNA was isolated using a modified TRIzol/RNeasy (Invitrogen UK; Qiagen UK) procedure as previously described, RNA from the rest of the samples was extracted using TRIzol(Invitrogen, UK)according to manufacturers instructions. All RNA was subsequently quantified with a NanoDrop ND-1000 UV-Vis spectrophotometer and visualized for quality using an Agilent 2100 bioanalyzer. (Parameters: Extracted product = total_RNA, Amplification = none)

text: Schistosoma mansoni

text: Schistosoma mansoni


text: Departments of Biochemistry and Pathology, 7703 Floyd Curl Dr., Mail Code 7760, University of Texas Health Science Center, San Antonio, Texas 78229-3900, US.

text: adult

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Schistosoma mansoni

characteristic: SRA accession

text: mixed

text: puerto rican

characteristic: StrainOrLine

characteristic: Submitter Id

text: weeks

text: ArrayExpress

text: Schistosoma mansoni

text: Schistosoma mansoni


text: larva

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Schistosoma mansoni

text: tail

characteristic: OrganismPart

text: mixed

text: puerto rican

text: hours

text: ArrayExpress

characteristic: broker name

characteristic: description

text: Schistosoma mansoni

characteristic: organism

text: Schistosoma mansoni

characteristic: title


S. epidermidis MRSE 52-2

characteristic: External Id

text: Universidad Autonoma de Sinaloa

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Facultad de Ciencias Quimico Biologicas

characteristic: collected by

characteristic: collection date

text: Mexico: Culiacan, Sinaloa

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: 5 years old

characteristic: host age

text: Nosocomial infections

characteristic: host disease

text: Healthy

characteristic: host health state

text: Child

text: pharyngeal exudade

characteristic: isolation source

text: 24.8265 N 107.3826 W

characteristic: lat lon

text: Staphylococcus epidermidis

text: MRSE 52-2

characteristic: strain

text: Pathogen: clinical or host-associated sample from Staphylococcus epidermidis MRSE 52-2


text: Institute of Basic Medical Sciences, School of Basic Medical Sciences, Hubei University of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

characteristic: cell line

text: GC cell

characteristic: cell type

text: missing

text: missing

text: Homo sapiens

characteristic: organism

text: 10 ng/mL rhTGFβ

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: GC cell

text: missing

text: missing

text: Homo sapiens

characteristic: title

text: PBS


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t0 ; SampleNr_13

characteristic: description

text: Trinidad and Tobago: Trinidad, off-shore

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t0 ; SampleNr_14

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t0 ; SampleNr_15

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t0 ; SampleNr_16

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t0 ; SampleNr_17

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t0 ; SampleNr_18

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t1 ; SampleNr_13

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t1 ; SampleNr_14

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t1 ; SampleNr_15

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t1 ; SampleNr_16

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t1 ; SampleNr_17

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t1 ; SampleNr_18

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t2 ; SampleNr_13

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t2 ; SampleNr_14

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t2 ; SampleNr_15

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t2 ; SampleNr_16

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t2 ; SampleNr_17

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t2 ; SampleNr_18

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t3 ; SampleNr_13

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t3 ; SampleNr_14

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t3 ; SampleNr_15

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t3 ; SampleNr_16

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t3 ; SampleNr_17

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t3 ; SampleNr_18

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t4 ; SampleNr_13

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t4 ; SampleNr_14

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t4 ; SampleNr_15

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t4 ; SampleNr_17

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t4 ; SampleNr_16

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t4 ; SampleNr_18

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t5 ; SampleNr_13

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t5 ; SampleNr_14

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t5 ; SampleNr_15

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t5 ; SampleNr_17

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: University of Duisburg-Essen

text: live

text: Metagenome or environmental

text: TimePoint_t5 ; SampleNr_18

text: oil reservoir

text: not available

text: oil metagenome

text: obligate anaerobe

text: pumped from oil reservoir

text: inocculated in microcosms

text: 0.3g oil + 100 mL formation water

text: ligh oil enrichment


text: MD Anderson Cancer Center

text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: Patient-derived xenograft

text: desmoplastic small round cell tumor

characteristic: subtype

text: Patient-derived xenograft

characteristic: tissue


text: MD Anderson Cancer Center

characteristic: INSDC first public

text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: Patient-derived xenograft

text: Ewing sarcoma

text: Patient-derived xenograft


text: MD Anderson Cancer Center

characteristic: INSDC last update

text: live

text: Generic

text: missing

text: missing

text: Homo sapiens

text: Patient-derived xenograft

text: CIC-DUX4 sarcoma

text: Patient-derived xenograft


text: Nanjing Normal University

text: live

characteristic: INSDC status

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: Homo sapiens

characteristic: host

text: Aspergillosis

characteristic: isolate

text: missing

text: missing

text: Aspergillus fumigatus

characteristic: strain

text: WT_biological replicate 1


text: Nanjing Normal University

text: live

text: Pathogen.cl

characteristic: SRA accession

text: missing

text: missing

text: missing

text: missing

text: Homo sapiens

text: Aspergillosis

text: missing

text: missing

text: Aspergillus fumigatus

characteristic: organism

text: WT_biological replicate 2


characteristic: External Id

text: Nanjing Normal University

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: Homo sapiens

text: Aspergillosis

text: missing

text: missing

text: Aspergillus fumigatus

text: WT_biological replicate 3


text: Nanjing Normal University

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: Homo sapiens

text: Aspergillosis

text: missing

text: missing

text: Aspergillus fumigatus

text: sas3_biological replicate 1


text: Nanjing Normal University

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: missing

text: missing

text: missing

text: missing

text: Homo sapiens

text: Aspergillosis

text: missing

text: missing

text: Aspergillus fumigatus

text: sas3_biological replicate 2


text: Nanjing Normal University

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: missing

text: missing

text: missing

text: missing

text: Homo sapiens

text: Aspergillosis

text: missing

text: missing

text: Aspergillus fumigatus

text: sas3_biological replicate 3


Enterobacter mori C1(1)

text: National Research Centre "Kurchatov Institute"

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: Namsaraev Z.B.

text: 20 cm

characteristic: depth

text: vineyard soil

text: Russia: Rostov region, Don valley, Tsimlyansk district, Sibirkovaya balka

text: Rhizosphere of Vitis vinifera cultivar "Plechistik"

text: 47.6360 N 42.0811 E

text: Enterobacter mori

text: rhizosphere soil sample

text: Microbe sample from Enterobacter mori


Serratia ficaria C1(2)

text: live

text: Microbe, viral or environmental

text: Namsaraev Z.B.

text: 20 cm

text: vineyard soil

text: 47.6360 N 42.0811 E

text: Serratia ficaria

text: rhizosphere soil sample

text: Microbe sample from Serratia ficaria

characteristic: title


Serratia sp. C2(1)

text: live

text: Microbe, viral or environmental

text: Namsaraev Z.B.

text: 15 cm

text: vineyard soil

text: Russia: Rostov region, Don valley, Tsimlyansk district, near the village Sarkel

text: Rhizosphere of Vitis vinifera cultivar "Tsimlyansky Black"

text: 47.6965 N 42.1849 E

text: Serratia sp. C2(1)

text: rhizosphere soil sample

text: Microbe sample from Serratia sp. C2(1)


Serratia sp. C2(2)

text: live

text: Microbe, viral or environmental

text: Namsaraev Z.B.

text: 15 cm

text: vineyard soil

text: 47.6965 N 42.1849 E

text: Serratia sp. C2(2)

text: rhizosphere soil sample

text: Microbe sample from Serratia sp. C2(2)


Azotobacter chroococcum Shazo_A

text: live

text: Microbe, viral or environmental

text: Namsaraev Z.B.

text: 20 cm

text: vineyard soil

text: Russia: Rostov region, Don valley, Aksaysky District, near the village Mishkinskaya

text: Rhizosphere of Vitis vinifera

text: 47.3468 N 40.0448 E

text: Azotobacter chroococcum

text: rhizosphere soil sample

text: Shazo A

text: Microbe sample from Azotobacter chroococcum


Novosphingobium resinovorum Shazo_N

text: live

text: Microbe, viral or environmental

text: Namsaraev Z.B.

text: 20 cm

text: vineyard soil

text: Rhizosphere of Vitis vinifera

text: 47.3468 N 40.0448 E

text: Novosphingobium resinovorum

text: rhizosphere soil sample

text: Shazo N

text: Microbe sample from Novosphingobium resinovorum


text: Universidad de Zaragoza

text: live

text: Pathogen.cl

text: Mariano Morales

text: Spain

text: dog

text: 6 years

text: Urinary Tract Infection

text: male

text: Clincal

text: 41.65 N 0.88 W

text: Escherichia coli

text: ExPEC

characteristic: pathotype

characteristic: serotype

text: Pathogen: clinical or host-associated sample from Escherichia coli


text: Universidad de Zaragoza

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Mariano Morales

text: Spain

text: dog

text: 9 years

text: Urinary Tract Infection

text: female

text: urinary tract infection

text: 41.65 N 0.88 W

text: Escherichia coli


text: Universidad de Zaragoza

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: Mariano Morales

text: Spain

text: dog

text: 7 years

text: Urinary Tract Infection

text: male

text: urinary tract infection

text: 41.65 N 0.88 W

text: Escherichia coli

text: ExPEC


text: Universidad de Zaragoza

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Mariano Morales

text: Spain

text: dog

text: 3 years

text: Urinary Tract Infection

text: female

text: urinary tract infection

text: 41.65 N 0.88 W

text: Escherichia coli

text: ExPEC


text: Universidad de Zaragoza

text: live

text: Pathogen.cl

text: Mariano Morales

text: Spain

text: dog

characteristic: host

text: 2 years

text: Urinary Tract Infection

text: female

text: urinary tract infection

text: 41.65 N 0.88 W

text: Escherichia coli

text: ExPEC


text: Universidad de Zaragoza

text: live

text: Pathogen.cl

text: Mariano Morales

text: Spain

text: dog

text: 9 years

text: Urinary Tract Infection

text: male

text: urinary tract infection

text: 41.65 N 0.88 W

text: Escherichia coli

text: ExPEC


text: Universidad de Zaragoza

text: live

text: Pathogen.cl

text: Mariano Morales

text: Spain

text: dog

text: 8 years

text: Urinary Tract Infection

text: male

text: urinary tract infection

text: 41.65 N 0.88 W

text: Escherichia coli

text: ExPEC


text: Universidad de Zaragoza

text: live

text: Pathogen.cl

text: Mariano Morales

text: Spain

text: dog

text: 12 years

text: Urinary Tract Infection

text: male

text: urinary tract infection

text: 41.65 N 0.88 W

text: Escherichia coli

text: ExPEC


text: Universidad de Zaragoza

text: live

text: Pathogen.cl

text: Mariano Morales

text: Spain

text: dog

text: 11 years

text: Urinary Tract Infection

text: male

text: urinary tract infection

text: 41.65 N 0.88 W

text: Escherichia coli

text: ExPEC


text: Zhejiang University

text: live

text: MIMAG.soil

text: not collected

text: This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR12676701

characteristic: derived-from

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: not collected

characteristic: elev

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

characteristic: environmental-sample

text: USA: Arizona

characteristic: isolate

text: soil

characteristic: isolation-source

text: 34.05 N 114.3 W

text: soil metagenome

characteristic: metagenome-source

characteristic: metagenomic

characteristic: note

text: Acidimicrobiales bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Acidimicrobiales bacterium


characteristic: External Id

text: Zhejiang University

characteristic: INSDC center name

text: live

text: MIMAG.soil

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not collected

characteristic: depth

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Nitriliruptorales bacterium

characteristic: organism

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Nitriliruptorales bacterium

characteristic: title


text: Zhejiang University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.soil

text: not collected

characteristic: derived-from

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Actinomycetota bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Actinomycetota bacterium


text: Zhejiang University

text: live

text: MIMAG.soil

text: not collected

text: This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR12676702

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

characteristic: elev

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

characteristic: environmental-sample

text: USA: Arizona

characteristic: isolate

text: soil

characteristic: isolation-source

text: 34.05 N 114.3 W

text: soil metagenome

characteristic: metagenome-source

text: Actinomycetota bacterium

text: metagenomic assembly


characteristic: External Id

text: Zhejiang University

characteristic: INSDC center name

text: live

text: MIMAG.soil

text: not collected

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

characteristic: metagenomic

characteristic: note

text: Thermoanaerobaculia bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Thermoanaerobaculia bacterium


text: Zhejiang University

text: live

text: MIMAG.soil

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not collected

characteristic: depth

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Chloroflexota bacterium

characteristic: organism

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Chloroflexota bacterium


text: Zhejiang University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.soil

text: not collected

characteristic: derived-from

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Acidimicrobiales bacterium

text: metagenomic assembly

characteristic: title


text: Zhejiang University

text: live

text: MIMAG.soil

text: not collected

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: not collected

characteristic: elev

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

characteristic: environmental-sample

text: USA: Arizona

characteristic: isolate

text: soil

characteristic: isolation-source

text: 34.05 N 114.3 W

text: soil metagenome

text: Longimicrobium sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Longimicrobium sp.


characteristic: External Id

text: Zhejiang University

characteristic: INSDC center name

text: live

text: MIMAG.soil

text: not collected

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

characteristic: metagenome-source

characteristic: metagenomic

characteristic: note

text: Candidatus Thermoplasmatota archaeon

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Candidatus Thermoplasmatota archaeon


text: Zhejiang University

text: live

text: MIMAG.soil

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not collected

characteristic: depth

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Nitrospiraceae bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Nitrospiraceae bacterium


text: Zhejiang University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.soil

text: not collected

characteristic: derived-from

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Longimicrobiaceae bacterium

characteristic: organism

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Longimicrobiaceae bacterium


text: Zhejiang University

text: live

text: MIMAG.soil

text: not collected

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: not collected

characteristic: elev

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

characteristic: environmental-sample

text: USA: Arizona

characteristic: isolate

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Microvirga sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Microvirga sp.

characteristic: title


characteristic: External Id

text: Zhejiang University

characteristic: INSDC center name

text: live

text: MIMAG.soil

text: not collected

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

characteristic: isolation-source

text: 34.05 N 114.3 W

text: soil metagenome

characteristic: metagenome-source

characteristic: metagenomic

text: Alphaproteobacteria bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Alphaproteobacteria bacterium


text: Zhejiang University

text: live

text: MIMAG.soil

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not collected

characteristic: depth

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

characteristic: note

text: Gaiellaceae bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Gaiellaceae bacterium


text: Zhejiang University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.soil

text: not collected

characteristic: derived-from

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Solirubrobacteraceae bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Solirubrobacteraceae bacterium


text: Zhejiang University

text: live

text: MIMAG.soil

text: not collected

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: not collected

characteristic: elev

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

characteristic: environmental-sample

text: USA: Arizona

characteristic: isolate

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Nitrososphaeraceae archaeon

characteristic: organism

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Nitrososphaeraceae archaeon


characteristic: External Id

text: Zhejiang University

characteristic: INSDC center name

text: live

text: MIMAG.soil

text: not collected

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

characteristic: isolation-source

text: 34.05 N 114.3 W

text: soil metagenome

characteristic: metagenome-source

text: Thermoleophilaceae bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Thermoleophilaceae bacterium

characteristic: title


text: Zhejiang University

text: live

text: MIMAG.soil

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not collected

characteristic: depth

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

characteristic: metagenomic

text: Nitrososphaera sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Nitrososphaera sp.


text: Zhejiang University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.soil

text: not collected

characteristic: derived-from

text: Keywords: GSC:MIxS;MIMAG:6.0

text: not collected

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

text: USA: Arizona

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

characteristic: note

text: Geodermatophilus sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Geodermatophilus sp.


text: Zhejiang University

text: live

text: MIMAG.soil

text: not collected

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: not collected

characteristic: elev

text: soil biome [ENVO:01001044]

text: Wetland

text: Wetland

characteristic: environmental-sample

text: USA: Arizona

characteristic: isolate

text: soil

text: 34.05 N 114.3 W

text: soil metagenome

text: Dehalococcoidia bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Dehalococcoidia bacterium