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text: mouse gut metagenome

text: ALG samples for mice colonized with the Microbiota of co-twins discordant for obesity

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

text: Mice ceca

text: UBERON:cecum

characteristic: body habitat

text: UBERON:cecum

characteristic: body product

characteristic: depth

text: fecal samples from mice colonized with the culture collection from DZ twin pair 1

characteristic: description

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: GAZ:United States of America

text: gut metagenome

characteristic: organism

text: n

text: gut metagenome

text: Titanium

characteristic: sequencing technology

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: SLU

text: public

text: horse

characteristic: common name

text: Equus caballus

text: Equus caballus

text: MCOA


characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiime_study_1523:tp4.Obese.DTFD.E02.15dpc.PM82

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

text: DTFD Monozygotic Discordant Twins

text: DTFD Monozygotic Discordant Twins

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp1.Lean.DTFD.E01.3dpc.PM57

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: 16s time course analysis of cecal contents collected from mice colonized with discordant twins microbiota

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: mouse

text: mouse gut metagenome

characteristic: organism

text: n

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiime_study_1452:fut2positive.day28.31.Regular

text: n

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Regular

characteristic: chow

text: All samples collected between Sept. 2010 and Dec. 2011

text: mouse gut metagenome

text: WT mouse fecal sample

text: WT mouse fecal sample

text: Regular chow/PS def

characteristic: elevation

text: ENVO:mammalia-associated habitat

characteristic: env biome

text: ENVO:mammalia-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: WT

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: n

characteristic: public

text: .1, g

characteristic: sample id

characteristic: sample name

characteristic: sampling day

text: mouse gut metagenome

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp1.Lean.DTFD.E01.Cec1.PM55

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:cecum

characteristic: body habitat

text: UBERON:cecum mucosa

characteristic: body product

text: UBERON:cecum mucosa

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

text: GAZ:United States of America

text: mouse

characteristic: host common name

characteristic: host taxid

text: mouse gut metagenome

characteristic: organism

text: n

text: mouse gut metagenome

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Obese.DTFD.E04.10dpc.F1

characteristic: Submitter Id

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiime_study_1522:tp1.Obese.DTFD.E03.Colon2.PM93

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:colon

characteristic: body habitat

text: UBERON:colonic mucosa

characteristic: body product

text: UBERON:colonic mucosa

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

text: GAZ:United States of America

text: Mus musculus

characteristic: host common name

characteristic: host taxid

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MetaHIT-Richness

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish


characteristic: ENA-FIRST-PUBLIC

text: CCME-COLORADO

characteristic: INSDC last update

text: public

characteristic: altitude

characteristic: anonymized name

text: y

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: metatranscriptome of humanized mice

characteristic: description

text: metatranscriptome of humanized mice

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: laboratory mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: n

characteristic: public

text: 0.1, g

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: taxon id

characteristic: title

text: Metatranscriptome of mice humanized with the intact, unclutured or culture collection from twins discordant for obesity


E-MTAB-1720:NS B

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-1720:NS B

tag: Namespace:University of Edinburgh

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Candida albicans (strain CAI4-CIp10) was grown in YPD-T (Tris buffered YPD: 2% w/v glucose, 2% w/v mycological peptone, 1% w/v yeast extract, 100 mM Tris.HCl, pH 7.4) to mid-exponential phase Cultures were split and exposed to stresses in fresh medium at an OD600 of 0.2. Biological triplicate cultures were processed After 10 min cells were flash frozen in liquid nitrogen and RNA was extracted using Qiazol (phenol/chloroform method). RNA was DNase treated using Ambion Turbo DNAfree kit before being sent for library preparation and sequencing. Libraries were prepared using standard Illumina RNAseq library preparation kit.

characteristic: description

text: ura3::imm434/ura3::imm434 + CIp19

characteristic: genotype

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: frozen specimen

characteristic: specimen with known storage state

characteristic: strain

text: NS B


text: CCME-COLORADO

text: public

text: qiime_study_1522:tp2.Obese.K02.HiSFLoFV.6dpc.B3.1

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: Mice_colonized_with_samples_from_discordant_twins_for_obeseity_and_fed_one_of_two_NHANES_based_diets

text: HiSFLoFV

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Obese.K02.LoSFHiFV.8dpc.B1

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LoSFHiFV

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

characteristic: genotype

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

text: n

text: human gut metagenome

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: CultureInitiativeExperiment.ArrayedInvasion

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

text: Cultured gut bacterial consortia from twins discordant for obesity modulate adiposity in gnotobiotic mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: No

text: n

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cohort

characteristic: collection date

characteristic: depth

characteristic: description

text: ENVO:human-associated habitat

text: ENVO:human-associated habitat

text: ENVO:feces

text: GAZ:United States of America

characteristic: height or length

text: Negative

characteristic: hiv

text: MiSeq

text: human gut metagenome

text: n

text: human gut metagenome

text: negative

characteristic: status

characteristic: taxon id

text: The bacterial composition of fecal samples in HIV negative and positive individuals

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp1.Lean.DTFD.E01.Cec1.PM58

characteristic: Submitter Id

text: y

text: UBERON:cecum

characteristic: body habitat

text: UBERON:cecum mucosa

text: UBERON:cecum mucosa

text: mouse gut metagenome

characteristic: common name

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Lean.K02.HiSFLoFV.3dpc.A18

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: HiSFLoFV

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

text: n

text: human gut metagenome

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Sub-adult

characteristic: age group

text: n

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of back

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

text: Rana cascadae_from_site_Found

text: Rana cascadae_from_site_Found

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Cascades Frog

characteristic: host common name

text: Rana cascadae

characteristic: host species

characteristic: host subject id

characteristic: host taxid

text: Raca

characteristic: latitude

characteristic: longitude

text: organismal metagenomes

characteristic: organism

text: Trinity

characteristic: park

text: Persisiting

characteristic: ph

text: n

characteristic: public

characteristic: redox potential

text: NR

text: swab

characteristic: sample id

characteristic: sample name

text: Found

characteristic: sample site

text: CA

characteristic: sample state

text: organismal metagenomes

characteristic: spcond

text: mS/cm

characteristic: temp

text: The amphibian skin microbiome across species, space and life history stages

text: dipnet

characteristic: trap type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Obese.DTFD.E04.8dpc.F3

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

text: human gut metagenome

text: n

text: human gut metagenome

characteristic: sex

characteristic: taxon id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.Lean.DTFD.E03.SI9.PM97

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:small intestine

characteristic: body habitat

text: UBERON:mucosa of small intestine

characteristic: body product

text: UBERON:mucosa of small intestine

text: human gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

text: GAZ:United States of America

text: Mus musculus

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: years

characteristic: age units

text: n

text: UBERON:feces

characteristic: body mass index

text: UBERON:feces

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

text: Obese female stool sample

characteristic: description

text: Obese female stool sample

characteristic: elevation

text: ENVO:human-associated habitat

characteristic: env biome

text: ENVO:human-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: GAZ:Colombia

characteristic: geographic location (country and/or sea)

characteristic: height or length

text: human

characteristic: host common name

text: human gut metagenome

text: y

text: human gut metagenome

characteristic: sex

characteristic: taxon id

characteristic: title

text: Human gut microbiota


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Lean.K02.LoSFHiFV.2dpc.A11

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

text: human gut metagenome

text: LoSFHiFV

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

characteristic: genotype

text: GAZ:United States of America

text: Mus musculus

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiime_study_1523:tp2.Obese.DTFD.E02.3dpc.PM81

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

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characteristic: collection date

text: mouse gut metagenome

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text: LowFat-RichinPlantPolysaccharide Chow

characteristic: donor

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

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text: mouse

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text: mouse gut metagenome

characteristic: sex

characteristic: taxon id

characteristic: title


September 2007 02:30 day+1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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characteristic: ENA-SUBMISSION-TOOL

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text: September 2007 02:30 day+1

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text: uncultured bacterium

text: September 2007 02:30 day+1


text: CCME-COLORADO

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characteristic: INSDC status

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text: ENVO:prairie

text: ENVO:soil

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characteristic: extracted DNA avail now

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: soil metagenome

characteristic: organism

characteristic: ph

text: y

characteristic: physical samp avail now

text: y

text: CIRES

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text: UBERON:feces

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text: UBERON:feces

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text: human gut metagenome

characteristic: taxon id

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Low fat high plant polysacharides

characteristic: diet

text: host associated

characteristic: environment (biome)

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characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: host-associated

characteristic: environmental package

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: house mouse

characteristic: host common name

characteristic: host subject id

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characteristic: investigation type

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characteristic: project name

text: mouse gut metagenome

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characteristic: sequencing method

text: Mouse fecal sample for COPRO-Seq


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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: y

text: UBERON:feces

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text: UBERON:feces

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text: LowFat-RichinPlantPolysaccharide Chow

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text: ENVO:feces

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text: wild-type

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characteristic: geographic location (country and/or sea)

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characteristic: latitude

characteristic: longitude

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characteristic: public

characteristic: sample id

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characteristic: sex

characteristic: taxon id

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characteristic: ENA-LAST-UPDATE

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: n

characteristic: batch

characteristic: collection date

text: compost metagenome

characteristic: common name

characteristic: depth

text: compost sample from Windrow

characteristic: description

text: compost sample from Windrow

text: ENVO:cropland

text: ENVO:farm

text: ENVO:compost

text: Process,Process through time

text: GAZ:United States of America

text: compost metagenome

text: y

text: compost metagenome

text: Highfields Center for Composting, Hardwick, Vermont

characteristic: site description

text: compost microbiome

text: W

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: BGI

text: public

text: human gut

characteristic: environment (biome)

text: human-associated habitat

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text: faeces

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text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: MetaHIT-Richness

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from danish

characteristic: title


characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

characteristic: age group

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

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text: UBERON:skin of back

characteristic: body site

characteristic: collection date

text: Jordan Kueneman

characteristic: collector name

text: organismal metagenome

characteristic: common name

characteristic: depth

text: Rana cascadae_from_site_26184

characteristic: description

text: Rana cascadae_from_site_26184

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text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

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text: ENVO:sebum

characteristic: env matter

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Cascades Frog

characteristic: host common name

text: Rana cascadae

characteristic: host species

characteristic: host subject id

characteristic: host taxid

text: Raca

characteristic: latitude

characteristic: longitude

text: organismal metagenomes

text: Trinity

characteristic: park

text: Declining

characteristic: ph

text: n

characteristic: public

characteristic: redox potential

text: R

text: swab

characteristic: sample id

characteristic: sample name

characteristic: sample site

text: CA

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text: organismal metagenomes

characteristic: spcond

text: mS/cm

characteristic: taxon id

characteristic: temp

text: dipnet

characteristic: trap type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Lean.K02.HiSFLoFV.16dpc.A12

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

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text: UBERON:feces

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text: human gut metagenome

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text: Mice_colonized_with_samples_from_discordant_twins_for_obeseity_and_fed_one_of_two_NHANES_based_diets

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text: HiSFLoFV

characteristic: diet

characteristic: elevation

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text: ENVO:feces

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text: wild-type

characteristic: genotype

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characteristic: geographic location (country and/or sea)

text: Mus musculus

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text: n

text: human gut metagenome

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: CCME-COLORADO

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text: public

characteristic: INSDC status

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text: qiime_study_1523:tp2.Lean.DTFD.E02.3dpc.PM86

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

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text: UBERON:feces

characteristic: body product

text: UBERON:feces

text: mouse gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

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characteristic: longitude

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text: Cultured gut bacterial consortia from twins discordant for obesity modulate adiposity in gnotobiotic mice


characteristic: ENA-FIRST-PUBLIC

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text: UBERON:feces

text: UBERON:feces

characteristic: body site

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text: 16s time course analysis of fecal pellets collected from mice colonized with discordant twins microbiota

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

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characteristic: env biome

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characteristic: INSDC status

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text: qiime_study_1522:tp1.Lean.DTFD.E03.SI13.PM98

characteristic: Submitter Id

characteristic: altitude

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text: y

text: UBERON:small intestine

characteristic: body habitat

text: UBERON:mucosa of small intestine

characteristic: body product

text: UBERON:mucosa of small intestine

text: human gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

text: ENVO:animal-associated habitat

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text: ENVO:organic material feature

text: wild-type

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characteristic: host subject id

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characteristic: INSDC first public

text: public

text: qiime_study_1523:tp4.Lean.DTFD.E03.24dpc.PM104

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

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text: LowFat-RichinPlantPolysaccharide Chow

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text: wild-type

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp4.Obese.DTFD.E02.SI5.C.PM79

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:small intestine

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characteristic: body product

text: UBERON:mucosa of small intestine

characteristic: body site

text: mouse gut metagenome

text: ALG samples for mice colonized with the Microbiota of co-twins discordant for obesity

text: LowFat-RichinPlantPolysaccharide Chow

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:organic material feature

text: wild-type

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characteristic: host subject id

characteristic: host taxid

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characteristic: longitude

text: mouse gut metagenome

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characteristic: ENA-LAST-UPDATE

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text: metatranscriptome of humanized mice

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characteristic: elevation

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characteristic: env biome

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characteristic: env feature

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text: laboratory mouse

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text: n

text: 0.1, g

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text: Metatranscriptome of mice humanized with the intact, unclutured or culture collection from twins discordant for obesity


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CCME-COLORADO

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characteristic: INSDC status

characteristic: SRA accession

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characteristic: altitude

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text: y

text: UBERON:feces

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text: UBERON:feces

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text: human gut metagenome

text: CultureInitiativeExperiment.BattleRoyale

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text: ENVO:feces

text: wild-type

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characteristic: longitude

text: human gut metagenome

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characteristic: public

characteristic: sample id

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characteristic: SRA accession

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text: n

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characteristic: description

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text: ENVO:sterile water

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text: ENVO:sterile water

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text: ENVO:sterile water

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characteristic: geographic location (country and/or sea)

text: MiSeq

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text: n

text: human gut metagenome

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text: The bacterial composition of fecal samples in HIV negative and positive individuals


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: altitude

characteristic: anonymized name

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text: UBERON:feces

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characteristic: body site

characteristic: collection date

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text: CultureInitiativeExperiment.ArrayedInvasion

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text: ENVO:feces

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characteristic: genotype

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characteristic: latitude

characteristic: longitude

text: human gut metagenome

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text: public

characteristic: INSDC status

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characteristic: altitude

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text: UBERON:feces

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text: human gut metagenome

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characteristic: env biome

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characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

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characteristic: geographic location (country and/or sea)

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text: human gut metagenome

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1522:tp1.Obese.Cohoused.CI.E02.Stomach.E10

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text: UBERON:stomach

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characteristic: body product

text: UBERON:mucosa of stomach

characteristic: body site

characteristic: collection date

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characteristic: INSDC status

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text: qiime_study_1522:tp2.Lean.K02.LoSFHiFV.8dpc.A9

characteristic: Submitter Id

characteristic: altitude

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text: UBERON:feces

characteristic: body habitat

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text: UBERON:feces

text: human gut metagenome

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characteristic: env biome

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characteristic: env feature

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characteristic: env matter

text: wild-type

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

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characteristic: organism

text: n

text: human gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WUSL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Low fat high plant polysacharides

characteristic: diet

text: host associated

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: house mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: Mouse fecal sample for COPRO-Seq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGHENT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: NCI60 cell line

characteristic: title


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: human gut metagenome

text: MetaHIT-Richness

text: human gut metagenome

text: Illumina

text: Stool sample from danish


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

text: public

text: qiime_study_1522:tp1.Lean.DTFD.E03.SI15.PM95

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:small intestine

characteristic: body habitat

text: UBERON:mucosa of small intestine

characteristic: body product

text: UBERON:mucosa of small intestine

characteristic: body site

text: human gut metagenome

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:organic material feature

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: n

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: B

characteristic: cohort

characteristic: depth

characteristic: description

text: ENVO:human-associated habitat

text: ENVO:human-associated habitat

text: ENVO:feces

text: GAZ:United States of America

characteristic: height or length

text: Positive

characteristic: hiv

text: MiSeq

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

text: Chronic

characteristic: status

characteristic: title

text: treated

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp2.Lean.K02.HiSFLoFV.5dpc.A16

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

characteristic: collection date

text: human gut metagenome

characteristic: common name

text: Mice_colonized_with_samples_from_discordant_twins_for_obeseity_and_fed_one_of_two_NHANES_based_diets

text: HiSFLoFV

characteristic: diet

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1523:tp1.Lean.DTFD.E03.10dpc.PM98

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

characteristic: depth

text: Mice_colonized_with_samples_from_discordant_twins_forobeseity

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

characteristic: donor

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: mouse

text: mouse gut metagenome

characteristic: organism

text: n

text: mouse gut metagenome

characteristic: title

text: Cultured gut bacterial consortia from twins discordant for obesity modulate adiposity in gnotobiotic mice


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiime_study_1523:tp1.Obese.DTFD.E03.15dpc.PM94

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse gut metagenome

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: mouse

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: mouse gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.CI.E03.2dpc.2Ln54.6

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiime_study_1522:tp1.CI.E08.LoSFHiFV.1dpc.Ln.B3

text: y

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: LoSFHiFV

characteristic: elevation

text: ENVO:animal-associated habitat

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: wild-type

characteristic: genotype

text: GAZ:United States of America

characteristic: geographic location (country and/or sea)

text: Mus musculus

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: n

characteristic: public

characteristic: sample id

characteristic: sample name

text: human gut metagenome

characteristic: sex

characteristic: taxon id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CCME-COLORADO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiime_study_1522:tp1.CI.E03.Cecadpc.1Ob.12

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: y

text: UBERON:cecum

characteristic: body habitat

text: UBERON:cecum mucosa

characteristic: body product

text: UBERON:cecum mucosa

characteristic: body site

characteristic: collection date

text: human gut metagenome

characteristic: common name

characteristic: depth

characteristic: description

text: LowFat-RichinPlantPolysaccharide Chow

characteristic: diet

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: ENVO:feces

text: wild-type

text: GAZ:United States of America

text: Mus musculus

text: human gut metagenome

characteristic: organism

text: n

text: human gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KUM-CUH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: mouse tail

characteristic: bio material

text: diverse

characteristic: cell type

text: house mouse

text: inbreed mouse strains

characteristic: mating type

text: Mus musculus

text: Mus musculus

text: M

characteristic: sex

text: mouse tail

characteristic: tissue type

text: Mouse 3464


text: KUM-CUH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: mouse tail

text: diverse

text: house mouse

characteristic: common name

text: inbreed mouse strains

text: Mus musculus

text: Mus musculus

text: F

text: mouse tail

text: Mouse 3390


text: KUM-CUH

text: public

text: mouse tail

text: diverse

text: house mouse

text: inbreed mouse strains

text: Mus musculus

characteristic: organism

text: Mus musculus

text: M

text: mouse tail

text: Mouse 3465

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KUM-CUH

text: public

text: mouse tail

text: diverse

text: house mouse

text: inbreed mouse strains

text: Mus musculus

text: Mus musculus

text: F

text: mouse tail

text: Mouse 3386


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KUM-CUH

text: public

text: mouse tail

text: diverse

text: house mouse

text: inbreed mouse strains

text: Mus musculus

text: Mus musculus

text: M

text: mouse tail

text: Mouse 3385


text: KUM-CUH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: mouse tail

text: diverse

text: house mouse

text: inbreed mouse strains

text: Mus musculus

text: Mus musculus

text: M

text: mouse tail

text: Mouse 3384


characteristic: C content

characteristic: C/N increase with depth

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: MYCOBT

text: public

characteristic: Mean Chitinase activity

characteristic: Mean Phenoloxidase activity

characteristic: Mean beta-Glucosidase activity

characteristic: N content

characteristic: Total phenolic content

characteristic: collection date

characteristic: depth

text: Raw sequences of Fungal ITS1 rRNA gene amplicons

characteristic: description

text: Pine forest

characteristic: environment (biome)

text: Pine forest plot covered by Calluna vulgaris

characteristic: environment (feature)

text: decomposed litter (Oe layer)

characteristic: environment (material)

text: soil

characteristic: environmental package

text: Höllberg, Germany

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: O horizon

characteristic: horizon

text: metagenome

characteristic: investigation type

text: uncultured fungus

text: Litter degradation beneath Ericaceae

characteristic: project name

text: uncultured fungus

characteristic: sequencing method

text: Fungal ITS1 rRNA gene amplicons


characteristic: C content

characteristic: C/N increase with depth

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: MYCOBT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Mean Chitinase activity

characteristic: Mean Phenoloxidase activity

characteristic: Mean beta-Glucosidase activity

text: < 0.45

characteristic: SRA accession

characteristic: Submitter Id

text: Pine forest

text: Pine forest plot without Ericaceaen understory

text: decomposed litter (Oe layer)

text: soil

text: Höllberg, Germany

text: O horizon

text: metagenome

text: uncultured fungus

characteristic: organism

text: Litter degradation beneath Ericaceae

text: uncultured fungus

text: Fungal ITS1 rRNA gene amplicons

characteristic: title


characteristic: C content

text: SRA-Webin

text: MYCOBT

text: public

characteristic: N content

characteristic: Total phenolic content

characteristic: collection date

characteristic: depth

characteristic: description

text: Pine forest

characteristic: environment (biome)

text: Pine forest plot covered by Vaccinium myrtillus

characteristic: environment (feature)

text: decomposed litter (Oe layer)

characteristic: environment (material)

text: soil

characteristic: environmental package

text: Höllberg, Germany

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: O horizon

characteristic: horizon

text: metagenome

characteristic: investigation type

text: uncultured fungus

text: Litter degradation beneath Ericaceae

characteristic: project name

text: uncultured fungus

characteristic: sequencing method

text: Fungal ITS1 rRNA gene amplicons


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: frozen sample

characteristic: bio source type

text: ArrayExpress

characteristic: broker name

text: isolated from human faeces, clinical strain

characteristic: clinical history

text: Protocols: Human feces were plated on YPD (yeast extract 1%, peptone 2%, D-Glucose 2%) agar plates added with antibiotics to prevent bacterial growth. Yeast colonies were then collected and species was assessed by ITS1-4 sequencing. Cells were grown in YPD liquid medium for genomic DNA extraction Libraries were constructed using Illumina TruSeq DNA Sample Prep standard protocol. Briefly, 5 ug of high molecular weight genomic DNA (gDNA) was fragmented by Covaris sonication device. Following sonication, DNA fragments were end-repaired and A-tailed. Adapters were then ligated via a 3′ thymine overhang. Finally, ligated fragments were amplified by PCR (10 cycles). insert sizes were 400-500 bp as evaluated in an Agilent DNA 1000 Analyzer Chip. DNA was extracted from 10^9 pelleted cells with the Qiagen Genomic DNA Isolation Kit following the manufacturer's instructions.

text: Torulaspora delbrueckii

characteristic: organism

text: Saccharomyces delbrueckii

text: Torulaspora delbrueckii

characteristic: strain

characteristic: title


text: EMBL-EBI

text: public

text: frozen sample

text: ArrayExpress

characteristic: description

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Yarrowia lipolytica


text: EMBL-EBI

text: public

text: frozen sample

text: ArrayExpress

text: Rhodotorula mucilaginosa

text: Rodoturola mucilagines

text: Rhodotorula mucilaginosa


text: EMBL-EBI

text: public

text: ArrayExpress

text: Protocols: Hibrid strain obtained by the cross S. bayanus 25 X S. cerevisiae 1014F5-1. Cells were grown in YPD liquid medium for genomic DNA extraction DNA was extracted from 10^9 pelleted cells with the Qiagen Genomic DNA Isolation Kit following the manufacturer's instructions. Libraries were constructed using Illumina TruSeq DNA Sample Prep standard protocol. Briefly, 5 ug of high molecular weight genomic DNA (gDNA) was fragmented by Covaris sonication device. Following sonication, DNA fragments were end-repaired and A-tailed. Adapters were then ligated via a 3′ thymine overhang. Finally, ligated fragments were amplified by PCR (10 cycles). insert sizes were 400-500 bp as evaluated in an Agilent DNA 1000 Analyzer Chip.

text: laboratory strain

characteristic: environmental history

text: S. cerevisiae x S. bayanus hybrid

text: hybrid

text: hybrid

text: frozen sample

characteristic: specimen with known storage state