text: female

characteristic: ArrayExpress-Sex

text: Haemonchus contortus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus


status: PUBLIC

text: Haemonchus contortus

tag: attribute

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: barber pole worm

characteristic: common name

text: Haemonchus contortus

characteristic: organism

text: Haemonchus contortus

characteristic: title


E-MTAB-4216:D3PWWP*-M8Chromo rep1-1

text: public

text: E-MTAB-4216:D3PWWP*-M8Chromo rep1-1

tag: Namespace:Institute of Biochemistry, University of Stuttgart

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Protocols: No treatment TrueSeq

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Replicate 1

characteristic: replicate

text: Homo sapiens

text: D3PWWP*-M8Chromo rep1-1


E-MTAB-4216:D3PWWP*-M8Chromo rep1-2

text: Institute of Biochemistry, University of Stuttgart

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4216:D3PWWP*-M8Chromo rep1-2

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 1

text: Homo sapiens

text: D3PWWP*-M8Chromo rep1-2


E-MTAB-4216:D3PWWP*-M8Chromo rep1-3

text: public

characteristic: INSDC status

text: E-MTAB-4216:D3PWWP*-M8Chromo rep1-3

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 1

text: Homo sapiens

text: D3PWWP*-M8Chromo rep1-3


E-MTAB-4216:D3PWWP*-M8Chromo rep1-4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4216:D3PWWP*-M8Chromo rep1-4

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 1

text: Homo sapiens

text: D3PWWP*-M8Chromo rep1-4


E-MTAB-4216:D3PWWP*-M8Chromo rep1-5

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4216:D3PWWP*-M8Chromo rep1-5

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 1

text: Homo sapiens

text: D3PWWP*-M8Chromo rep1-5


E-MTAB-4216:D3PWWP*-M8Chromo rep2-1

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4216:D3PWWP*-M8Chromo rep2-1

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 2

text: Homo sapiens

text: D3PWWP*-M8Chromo rep2-1


E-MTAB-4216:D3PWWP*-M8Chromo rep2-2

characteristic: External Id

text: public

text: E-MTAB-4216:D3PWWP*-M8Chromo rep2-2

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 2

text: Homo sapiens

text: D3PWWP*-M8Chromo rep2-2


E-MTAB-4216:D3PWWP*-M8Chromo rep2-3

characteristic: INSDC center name

text: public

text: E-MTAB-4216:D3PWWP*-M8Chromo rep2-3

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 2

text: Homo sapiens

text: D3PWWP*-M8Chromo rep2-3


E-MTAB-4216:D3PWWP*-M8Chromo rep2-4

text: public

characteristic: SRA accession

text: E-MTAB-4216:D3PWWP*-M8Chromo rep2-4

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 2

text: Homo sapiens

text: D3PWWP*-M8Chromo rep2-4


E-MTAB-4216:D3PWWP-M8Chromo rep1-1

text: public

text: E-MTAB-4216:D3PWWP-M8Chromo rep1-1

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 1

text: Homo sapiens

text: D3PWWP-M8Chromo rep1-1


E-MTAB-4216:D3PWWP-M8Chromo rep1-2

text: public

text: E-MTAB-4216:D3PWWP-M8Chromo rep1-2

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 1

text: Homo sapiens

text: D3PWWP-M8Chromo rep1-2


E-MTAB-4216:D3PWWP-M8Chromo rep1-3

text: public

text: E-MTAB-4216:D3PWWP-M8Chromo rep1-3

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Replicate 1

text: Homo sapiens

text: D3PWWP-M8Chromo rep1-3


E-MTAB-4216:D3PWWP-M8Chromo rep2-1

text: public

text: E-MTAB-4216:D3PWWP-M8Chromo rep2-1

text: ArrayExpress

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 2

text: Homo sapiens

text: D3PWWP-M8Chromo rep2-1

characteristic: title


E-MTAB-4216:D3PWWP-M8Chromo rep2-2

text: public

text: E-MTAB-4216:D3PWWP-M8Chromo rep2-2

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 2

text: Homo sapiens

text: D3PWWP-M8Chromo rep2-2


E-MTAB-4216:D3PWWP-M8Chromo rep2-3

text: public

text: E-MTAB-4216:D3PWWP-M8Chromo rep2-3

text: ArrayExpress

characteristic: cell line

text: human

text: Protocols: No treatment TrueSeq

text: Homo sapiens

text: Homo sapiens

text: Replicate 2

text: Homo sapiens

text: D3PWWP-M8Chromo rep2-3


text: public

tag: Namespace:Division of Computational System Biology, Department of Microbiology and Ecosystem Science

text: ArrayExpress

text: bread wheat

characteristic: cultivar

text: Protocols: F. graminearum conidia spores from strain IFA65 required for inoculation were produced on defined SNA medium under UV-light at 25C. After two weeks conidia were harvested and diluted to 50,000 conidia/mL in water. Aliquots were stored at 80C. The inoculation experiment was conducted under controlled light house conditions in December 2013 as described in (REF). Briefly, twelve florets from 6 central spikelets (the two basal florets) were inoculated at anthesis with 10 ul of spore suspension (500 conidia) or mock. Plant heads were moistened and covered in plastic bags until sampling but no longer than 24 hours to provide favorable humid conditions for the fungus to germinate. Plants were sampled at 3, 6, 12, 24, 36 and 48 hours after inoculation by shock-freezing the inoculated section of the head including the rachis. In total 360 plants were inoculated comprising two NILs, six time points, two treatments and three replicates each including five pooled samples. 20 heads per NIL remained undissected and remained for phenotyping the total number of diseased spikelets per head 21 days after inoculation in the greenhouse. Frozen samples were ground under sterile conditions and pooled to comprise a single sample/data point as described in Kugler et al (2013). 100 mg frozen tissue was used to extract RNA using the RNeasy Plant Mini Kit (Qiagen, Venlo, Netherlands). Quality and quantity was checked on an an automated electrophoresis-system (Experion, #701-7000, Bio-Rad, Hercules, CA, US). Samples were Illumina sequenced on HiSeq2000/MiSeq machines (Eurofins MGW) yielding at least 20M 100bp paired-end reads per samples. Each sample represents one experimental condition (pathogen/mock; time points; genotype). Each experimental condition has been replicated 3x.

characteristic: description

text: anthesis

characteristic: developmental stage

text: Fusarium graminearum

characteristic: infect

text: Triticum aestivum

text: Triticum aestivum

text: spikelets (only using palea, lemma and rachis)

characteristic: organism part

text: Triticum aestivum

text: frozen specimen

characteristic: specimen with known storage state

unit: hour

characteristic: time

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Division of Computational System Biology, Department of Microbiology and Ecosystem Science

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: bread wheat

text: anthesis

text: Fusarium graminearum

text: Triticum aestivum

text: Triticum aestivum

text: Triticum aestivum

text: frozen specimen


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: bread wheat

characteristic: common name

text: anthesis

text: mock inoculation

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum

text: Triticum aestivum

text: frozen specimen


text: UNIVERSITY OF MANCHESTER

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: Cloned partial ribulose carboxylase gene sequence from uncultured pottery swab sample, Northern Ghana.

characteristic: description

text: Triticeae environmental sample

text: Triticeae environmental sample

characteristic: title


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial ribulose carboxylase gene sequence from an uncultured pottery swab sample, Northern Ghana

text: Triticeae environmental sample

text: Triticeae environmental sample


text: JUSTUS LIEBIG UNIVERSITAT

text: public

tag: Namespace:JUSTUS LIEBIG UNIVERSITAT

text: Escherichia coli

text: Escherichia coli

text: ESBL-encoding E. coli from companion animals and livestock in Tanzania


text: public

tag: Namespace:WELFARE, DEPARTMENT OF INFECTIOUS DISEAS

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes WGS project


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned non-specifically amplified sequence from an uncultured pottery swab sample, Northern Ghana

text: unidentified proteobacterium

text: unidentified proteobacterium


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L sequence from an uncultured pottery swab sample, Northern Ghana

text: unidentified plant

text: unidentified plant


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned non specifically amplified sequence from an uncultured pottery swab sample, Northern Ghana

text: unidentified

text: unidentified


text: ANIMAL HEALTH TRUST

text: public

tag: Namespace:ANIMAL HEALTH TRUST

text: dog

text: RNAseq of canine (Border Collie)cerebrum

text: Canis lupus familiaris

text: Canis lupus familiaris


text: ANIMAL HEALTH TRUST

text: public

text: dog

text: Canine cerebellum RNAseq (Breed: Hungarian Vizsla)

text: Canis lupus familiaris

text: Canis lupus familiaris


text: ANIMAL HEALTH TRUST

text: public

text: dog

text: Canine whole genome sequencing (Breed: Hungarian Vizsla)

text: Canis lupus familiaris

text: Canis lupus familiaris


text: ANIMAL HEALTH TRUST

text: public

text: dog

text: Canine Whole Genome Sequencing (Breed: Border Collie)

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Regeneron Pharmaceuticals

text: public

tag: Namespace:Regeneron Pharmaceuticals

text: ArrayExpress

characteristic: broker name

text: No Ventilation

characteristic: clinical history

text: house mouse

text: Protocols: The experimental rats were anaesthetized, mechanically ventilated and treated with -cobratoxin for durations varying from 6 h to 14 days. Briefly, all surgery was performed under sterile techniques. 1) Precordial silver wire electrocardiogram (ECG) electrodes were implanted subcutaneously. 2) An aortic catheter (28-gauge Teflon) was inserted via the left carotid artery to record arterial blood pressure. 3) A 0.9 mm Renathane catheter was threaded into the left jugular vein to record venous blood pressure and administers parental solutions. 4) Three subcutaneous electroencephalogram needles were placed into the skull above the right and left temporal lobes and a third reference electrode was placed in the neck region. 5) Temperature was measured by a vaginal thermistor and servo regulated at 37 C. 6) A silicon cannula was inserted in the urethra to continuously record urine output. Animals were maintained in protein and fluid balance with an intra-arterial solution (0.6 ml/h) consisting of 50 ml H2O, 50 ml 0.5 N lactated Ringer solution, 1.25 g sodium oxacillin, 2.8 mg -cobratoxin, 0.3 mg vitamin K (Synkavite) and 20 meq K+ (as KCl), as well as with an intra-venous solution (0.6 ml/h) consisting of 50 ml H2O, 50 ml 0.5 N lactated Ringer solution, 20% glucose (Baxter, Deerfield, IL, USA) and 1.25 g sodium oxacillin. The sham operated controls rat underwent the same intervention as the experimental group animals but were not pharmacological paralyzed with -cobratoxin. During surgery or at any possible irritating manipulation, the anesthetic isoflorane level was >1.5%. Isoflorane was delivered into the inspiratory gas stream by a precision mass-flow controller. After the initial surgery, isoflorane was gradually lowered over 1-2 days and maintained at < 0.5% during the remaining experimental period. Rats were ventilated through a per os coaxial tracheal cannula at 72 breaths/minute with an inspiratory and expiratory ratio of 1:2 and a minute volume of 180-200 ml. Neuromuscular blockade (NMB) was induced on the first day and maintained by continuous infusion. Mechanical ventilation was started immediately after the NMB induction. The left leg of the animal was activated for 6 hours at the shortest duration and 12 hours per day at duration 12 hours and longer throughout the experiment, using a mechanical lever arm that produces a continuous passive maximal ankle joint flexion-extension at a speed of 13.3 cycles per minute. Total RNA was isolated from the proximal part of gastrocnemius muscle using spin column purification RNAeasy (QIAGEN, Hilden, Germany). 300 ng of total RNA from the gastrocnemius muscle, proximal part was reversed transcribed to cDNA using Qscript cDNA super mix (Quanta Biosciences, Gaithersburg, Maryland, USA) and was diluted into a final volume of 100 L. Primers were designed using the software Primer 3 (http://biotools.umassmed.edu/bioapps/primer3_www.cgi) and ordered from Sigma-Aldrich (Sigma-Aldrich, St Louis, Missouri, USA). cDNA was amplified in triplicate using MyiQTMsingle color real time PCR detection system (Bio-Rad Laboratories, Inc., Hercules, California, USA).

text: Mus musculus

text: Mus musculus

text: right plantaris muscle

characteristic: organism part

text: Mus musculus

text: Sprague Dawley

characteristic: strain

text: no exercise

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Regeneron Pharmaceuticals

text: public

text: ArrayExpress

text: Short Term Ventilation

text: house mouse

text: Mus musculus

text: Mus musculus

text: right plantaris muscle

text: Mus musculus

text: Sprague Dawley

characteristic: time

text: no exercise


characteristic: External Id

text: Regeneron Pharmaceuticals

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Long Term Ventilation

text: house mouse

text: Mus musculus

text: Mus musculus

text: right plantaris muscle

text: Mus musculus

text: Sprague Dawley

unit: day

text: no exercise


text: Regeneron Pharmaceuticals

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: No Ventilation

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: left plantaris muscle

text: Mus musculus

text: Sprague Dawley

text: passive exercise


text: Regeneron Pharmaceuticals

text: public

text: ArrayExpress

characteristic: broker name

text: Short Term Ventilation

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: left plantaris muscle

text: Mus musculus

text: Sprague Dawley

characteristic: title

text: passive exercise


text: Regeneron Pharmaceuticals

text: public

text: ArrayExpress

text: Long Term Ventilation

characteristic: clinical history

text: house mouse

text: Mus musculus

text: Mus musculus

text: left plantaris muscle

characteristic: organism part

text: Mus musculus

text: Sprague Dawley

characteristic: strain

text: passive exercise

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF WARWICK

text: public

tag: Namespace:UNIVERSITY OF WARWICK

characteristic: collection date

text: Acinetobacter baumannii

text: Germany

characteristic: geographic location (country and/or sea)

text: cologne

characteristic: geographic location (region and locality)

text: Human

characteristic: host

text: tracheal secretion

characteristic: isolation source

text: 50.936 N 6.952 E

characteristic: lat lon

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: C

text: Acinetobacter baumannii strain C


characteristic: External Id

text: UNIVERSITY OF WARWICK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Acinetobacter baumannii

text: Germany

text: cologne

text: Human

text: tracheal secretion

text: 50.936 N 6.952 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: D

text: Acinetobacter baumannii strain D


text: UNIVERSITY OF WARWICK

text: public

text: Acinetobacter baumannii

characteristic: description

text: Germany

text: cologne

text: Human

text: tracheal secretion

text: 50.936 N 6.952 E

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

text: E

characteristic: strain

text: Acinetobacter baumannii strain E

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF WARWICK

text: public

characteristic: collection date

text: Acinetobacter baumannii

text: Germany

text: cologne

text: Human

text: tracheostoma

text: 50.936 N 6.952 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: F

text: Acinetobacter baumannii strain F


text: UNIVERSITY OF WARWICK

text: public

text: Acinetobacter baumannii

text: Germany

characteristic: geographic location (country and/or sea)

text: cologne

characteristic: geographic location (region and locality)

text: Human

characteristic: host

text: tracheal secretion

characteristic: isolation source

text: 50.936 N 6.952 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: G

text: Acinetobacter baumannii strain G


characteristic: External Id

text: UNIVERSITY OF WARWICK

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Acinetobacter baumannii

text: Germany

text: cologne

text: Human

text: tracheal secretion

text: 50.936 N 6.952 E

characteristic: lat lon

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: I

text: Acinetobacter baumannii strain I


text: UNIVERSITY OF WARWICK

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Acinetobacter baumannii

text: Germany

text: cologne

text: Human

text: bedsore

text: 50.936 N 6.952 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: J

text: Acinetobacter baumannii strain J


text: UNIVERSITY OF WARWICK

text: public

text: Acinetobacter baumannii

characteristic: description

text: Germany

text: cologne

text: Human

text: blood culture

text: 50.936 N 6.952 E

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

text: K

characteristic: strain

text: Acinetobacter baumannii strain K

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF WARWICK

text: public

characteristic: collection date

text: Acinetobacter baumannii

text: Germany

text: cologne

text: Human

text: tracheal secretion

text: 50.936 N 6.952 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: L

text: Acinetobacter baumannii strain L


text: CBMSO

text: public

text: Metagenomic from the hyper saline environment of Uyuni saltpan.

text: metagenomes

text: metagenomes

text: Archaea metagenomics of hyper saline environment


text: cell populations

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: osteogenic and adipogenic progenitors cells from mouse

characteristic: sample description

text: Mus musculus


Gorbachella massiliensis

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Gorbachella massiliensis

text: Culturomics study of the human gut microbiota

text: Ruminococcaceae bacterium GD5

text: Ruminococcaceae bacterium GD5

text: Gorbachella massiliensis genome


text: UNIVERSITY OF MANCHESTER

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Poaceae environmental sample

text: Poaceae environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L sequence, from a pottery swab sample, Northern Ghana

characteristic: description

text: Poaceae environmental sample

characteristic: organism

text: Poaceae environmental sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L sequence from a pottery swab sample, Northern Ghana

text: Poaceae environmental sample

text: Poaceae environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L sequence from a pottery swab sample, Northern hana

text: Poaceae environmental sample

text: Poaceae environmental sample


Intestinimonas gabonensis

text: URMITE

text: public

text: Intestinimonas gabonensis

text: Intestinimonas sp. GM5

text: Intestinimonas sp. GM5

characteristic: strain

text: Intestinimonas gabonensis genome


text: Stazione Zoologica \Anton Dohrn\

text: public

tag: Namespace:"Stazione Zoologica \""Anton Dohrn\"""

text: ArrayExpress

characteristic: broker name

text: Protocols: Prior to start the CO2 treatment plants were left to recover from transportation, and monitored for five days after transplantation (i.e. acclimated). At the end of the acclimation period (t0), C. nodosa was either kept under present day (400 ppm), or pCO2 elevated to 1,200 ppm, close to the IPCC business as usual scenario for 2100. In total, five tanks were set at 400 ppm whereas the other five were maintained at pCO2 of 1,200 ppm. Plant material for RNA extraction and subsequent transcriptome sequencing was sampled at t0, and after 12 days of exposure to current or elevated pCO2 (t1) from three of the five experimental tanks treatment. All samples were taken between 11 and 13 h to avoid circadian modulation of gene expression, rapidly cleaned of epiphytes and entirely submerged in RNAlater tissue collection (Ambion, life technologies), to inhibit RNA degradation. After let the solution penetrate throughout the tissue for one night at 4C, leaf samples were definitely stored at -20C until RNA extraction. Total RNA from youngest fully developed leaves of Cymodocea nodosa ramets, was extracted with AurumTM Total RNA Mini Kit (BIO-RAD) following manufacturers protocol. Qualified RNA samples were sent to Personal Genomics s.r.l. (Verona, Italy) for libraries preparation and sequencing. Nine cDNA libraries were constructed according to the Illumina TruSeq Stranded mRNA library protocol outlined in TruSeq Stranded mRNA Sample Preparation Guide (Part # 15031047; Rev. E; October 2013), from 2.5 g total RNA. The libraries were subsequently size selected using the Pippin Prep automated gel electrophoresis system (Sage Science) for 350 to 550 bp.

text: CO2 1200ppm

characteristic: growth condition

text: Cymodocea nodosa

text: Cymodocea nodosa

text: leaf

characteristic: organism part

text: Cymodocea nodosa

text: Treated (CO2 1200ppm)

characteristic: stimulus


characteristic: External Id

text: EBI

characteristic: INSDC center name

text: public

text: Sinorhizobium fredii HH103

characteristic: plasmid

text: Sinorhizobium fredii HH103

text: BioSample entry for WGS set CDSA


Fusarium fujikuroi

text: EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Fusarium fujikuroi

text: Fusarium fujikuroi IMI 58289

text: Fusarium fujikuroi IMI 58289

text: IMI 58289

text: BioSample entry for Fusarium fujikuroi genome


text: EBI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Armadillidium vulgare iridescent virus

text: Armadillidium vulgare iridescent virus

text: BioSample entry for invertebrate iridovirus 31 genome


Bartonella schoenbuchensis MTV06

text: EBI

text: public

text: Bartonella schoenbuchensis MTV06

text: Bartonella schoenbuchensis

characteristic: organism

text: Bartonella schoenbuchensis

text: BioSample entry for Bartonella schoenbuchensis MVT06 genome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CBMSO

text: public

characteristic: description

text: metagenomes

text: metagenomes

text: Eukaryote metagenomics of hyper saline environment


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:University Medical Center Hamburg-Eppendorf

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: lung

characteristic: tissue type

text: Lung Selection Round 1


text: University Medical Center Hamburg-Eppendorf

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: lung

text: Lung Selection Round 2


text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: lung

text: Lung Selection Round 3


text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: lung

text: Lung Selection Round 4


text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: lung

text: Lung Selection Round 5


text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: heart

text: Heart Selection Round 5


text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Liver Selection Round 5


text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: kidney

text: Kidney Selection Round 5


Bacillus phoceensis

text: URMITE

text: public

text: Bacillus phoceensis

text: Culturomics study of the human gut

text: Bacillus sp. SIT16

text: Bacillus sp. SIT16

characteristic: strain

text: Bacillus phoceensis genome


Butyricimonas phoceensis

characteristic: External Id

text: URMITE

text: public

text: Butyricimonas phoceensis

text: Butyricimonas sp. AT11

text: Butyricimonas sp. AT11

text: Butyricimonas phoceensis genome


text: EMBL EBI

characteristic: INSDC center name

text: public

tag: Namespace:EMBL EBI

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: mESC

characteristic: cell type

text: house mouse

text: Protocols: Cells were grown in one of 3 different media: Serum-containing media: Knockout DMEM (Gibco), 1X penicillin-streptomycin-glutamine (Gibco), 1X non-essential amino acids (Gibco), 100 U/ml recombinant human leukemia inhibitory factor (Millipore), 15% fetal bovine serum (HyClone), 0.1mM _-mercaptoethanol (Sigma). Standard 2i media: N2B27 basal media (NDiff 227, StemCells), 100 U/ml recombinant human leukemia inhibitory factor (Millipore), 1 _M PD0325901 (Stemgent), 3 _M CHIR99021 (Stemgent). Alternative 2i media: N2B27 basal media (NDiff 227, StemCells), 100 U/ml recombinant human leukemia inhibitory factor (Millipore), 1 _M CGP77675 (Sigma), 3 _M CHIR99021 (Stemgent). (SMARTer) reverse transcription and cDNA preamplification were performed in the 10-17 microns Fluidigm C1 Single-Cell Auto Prep IFC using the SMARTer PCR cDNA Synthesis kit (Clontech) and the Advantage 2 PCR kit (RNAEasy) RNA was extracted usin RNAEasy kit, Qiagen (Nextera XT) For each culture condition, 4000 cells were loaded onto a 10-17 micron Fluidigm C1 Single-Cell Auto Prep IFC and cell capture was performed according to the manufacturer's instructions. Nextera libraries were according to Using the C1TM Single-Cell Auto Prep System to Generate mRNA from Single Cells and Libraries for Sequencing. (TruSeq) Bulk mRNA sequencing libraries were prepared and sequenced at the Wellcome Trust Sanger Institute sample preparation pipeline using Illumina's TruSeq RNA Sample Preparation v2 kit. RNA was extracted from 1-2mln cells using Qiagen RNA Purification Kit on QiaCube robot. Quality of RNA sample was checked using gel electrophoresis. For library preparation poly-A RNA was purified from total RNA using oligo-dT magnetic pull-down, subsequently mRNA was fragmented using metal-ion catalyzed hydrolysis. cDNA was synthesized using random priming, end repair was performed to obtain blunt ends and A-tailing was done to enable subsequent ligation of Illumina paired-end sequencing adapters. Samples were multiplexed at this stage. Resulting library was amplified using 10 cycles of PCR using Kapa Hifi polymerase instead of polymerase provided by Illumina in TruSeq kit

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: fresh specimen

characteristic: specimen with known storage state


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Poaceae environmental sample

text: Poaceae environmental sample


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: Submitter Id

text: Cloned partial trnL region from a pottery swab sample, Northern Ghana

text: Poaceae environmental sample

characteristic: organism

text: Poaceae environmental sample

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: Escherichia coli

text: Escherichia coli

text: ESBL producers from fish and soil samples in Tanzania


text: TUM

text: public

text: Asaccharobacter muris

characteristic: common name

text: Pure culture of Asaccharobacter muris DSM29508

characteristic: description

text: mouse

characteristic: host

text: Asaccharobacter sp. DSM 29508

text: Asaccharobacter sp. DSM 29508


characteristic: External Id

text: TUM

characteristic: INSDC center name

text: public

text: Blautia caecimuris

text: Pure culture of Blautia caecimuris DSM29492

text: mouse

text: Blautia sp. DSM 29492

text: Blautia sp. DSM 29492


text: TUM

text: public

text: Cuniformibacter caecimuris

text: Pure culture of Cuniformibacter caecimuris DSM29486

text: mouse

text: Lachnospiraceae bacterium DSM 29486

text: Lachnospiraceae bacterium DSM 29486


text: TUM

text: public

text: Flintia butyricum

text: Pure culture of Flintia butyricum DSM27579

text: mouse

text: Ruminococcaceae bacterium DSM 27579

text: Ruminococcaceae bacterium DSM 27579


text: TUM

text: public

text: Frisingicoccus caecimuris

text: Pure culture of Frisingicoccus caecimuris DSM28559

text: mouse

text: Lachnospiraceae bacterium DSM 28559

text: Lachnospiraceae bacterium DSM 28559


text: TUM

text: public

text: Intestinibacter muris

text: Pure culture of Intestinibacter muris DSM28560

text: mouse

text: Lachnospiraceae bacterium DSM 28560

text: Lachnospiraceae bacterium DSM 28560


text: TUM

text: public

text: Irregularibacter muris

text: Pure culture of Irregularibacter muris DSM28593

text: mouse

text: Clostridiaceae bacterium DSM 28593

text: Clostridiaceae bacterium DSM 28593


text: TUM

text: public

text: Longicatanae caecimuris

text: Pure culture of Longicatanae caecimuris DSM29481

text: mouse

text: Erysipelotrichaceae bacterium DSM 29481

text: Erysipelotrichaceae bacterium DSM 29481


text: TUM

text: public

text: Longicella muris

text: Pure culture of Longicella muris DSM29487

text: mouse

text: Erysipelotrichaceae bacterium DSM 29487

text: Erysipelotrichaceae bacterium DSM 29487


text: TUM

text: public

text: Muricomitis intestini

text: Pure culture of Muricomitis intestini DSM29489

text: mouse

text: Lachnospiraceae bacterium DSM 29489

text: Lachnospiraceae bacterium DSM 29489


text: TUM

text: public

text: Pasteruella caecimuris

text: Pure culture of Pasteruella caecimuris DSM28627

text: mouse

text: Pasteurella sp. DSM 28627

text: Pasteurella sp. DSM 28627


text: TUM

text: public

text: Pure culture of Enterorhabdus mucosicola DSM19490

text: mouse

text: Enterorhabdus mucosicola

text: Enterorhabdus mucosicola


text: TUM

text: public

text: Pure culture of Streptococcus danieliae DSM22233

text: mouse

text: Streptococcus danieliae

text: Streptococcus danieliae


text: TUM

text: public

text: Pure culture of Alistipes sp. DSM27924

text: mouse

text: Alistipes

text: Alistipes


text: TUM

text: public

text: Pure culture of Bacteroides sartorii DSM21941

text: mouse

text: Bacteroides sartorii

text: Bacteroides sartorii


text: TUM

text: public

text: Pure culture of Intestinimonas butyriciproducens DSM26588

text: mouse

text: Intestinimonas butyriciproducens

text: Intestinimonas butyriciproducens


text: TUM

text: public

text: Pure culture of Murimonas intestini DSM26524

text: mouse

text: Murimonas intestini

text: Murimonas intestini


text: TUM

text: public

text: Pure culture of Paenibacillus lactis DSM28626

text: mouse

text: Paenibacillus lactis

text: Paenibacillus lactis


text: TUM

text: public

text: Pure culture of Actinomyces bowdenii DSM28589

text: mouse

text: Actinomyces bowdenii

text: Actinomyces bowdenii


text: TUM

text: public

text: Pure culture of Parabacteroides distasonis DSM29491

text: mouse

text: Parabacteroides distasonis

text: Parabacteroides distasonis


text: TUM

text: public

text: Pure culture of Clostridium bolteae DSM29485

text: mouse

text: [Clostridium] bolteae

text: [Clostridium] bolteae


text: TUM

text: public

text: Pure culture of Lactobacillus murinus DSM28683

text: mouse

text: Lactobacillus murinus

text: Lactobacillus murinus


text: TUM

text: public

text: Pure culture of Escherichia coli DSM28618

text: mouse

text: Escherichia coli

text: Escherichia coli


text: TUM

text: public

text: Pure culture of Enterococcus hirae DSM28619

text: mouse

text: Enterococcus hirae

text: Enterococcus hirae


text: TUM

text: public

text: Pure culture of Staphylococcus xylosus DSM28566

text: mouse

text: Staphylococcus xylosus

text: Staphylococcus xylosus


text: TUM

text: public

text: Pure culture of Enterococcus gallinarum DSM28564

text: mouse

text: Enterococcus gallinarum

text: Enterococcus gallinarum


text: TUM

text: public

text: Pure culture of Bacteroides acidifaciens DSM100024

text: mouse

text: Bacteroides acidifaciens

text: Bacteroides acidifaciens


text: TUM

text: public

text: Pure culture of Bacteroides xylanisolvens DSM100015

text: mouse

text: Bacteroides xylanisolvens

text: Bacteroides xylanisolvens


text: TUM

text: public

text: Pure culture of Clostridium bifermentans DSM29423

text: mouse

text: [Clostridium] bifermentans

text: [Clostridium] bifermentans


text: TUM

text: public

text: Pure culture of Lactobacillus taiwanensis DSM28674

text: mouse

text: Lactobacillus taiwanensis

text: Lactobacillus taiwanensis


text: TUM

text: public

text: Pure culture of Parvibacter caecicola DSM22242

text: mouse

text: Parvibacter caecicola

text: Parvibacter caecicola


text: TUM

text: public

text: Pure culture of Enterorhabdus caecimuris DSM21839

text: mouse

text: Enterorhabdus caecimuris

text: Enterorhabdus caecimuris


text: TUM

text: public

text: Pure culture of Cellulosimicrobium cellulans DSM29131

text: mouse

text: Cellulosimicrobium cellulans

text: Cellulosimicrobium cellulans


text: TUM

text: public

text: Pure culture of Anaerotruncus colihominis DSM28734

text: mouse

text: Anaerotruncus colihominis

text: Anaerotruncus colihominis


text: TUM

text: public

text: Pure culture of Clostridium symbiosum DSM29356

text: mouse

text: [Clostridium] symbiosum

text: [Clostridium] symbiosum


text: TUM

text: public

text: Pure culture of Blautia coccoides DSM28737

text: mouse

text: Blautia coccoides

text: Blautia coccoides


text: TUM

text: public

text: Pure culture of Clostridium innocuum DSM29132

text: mouse

text: [Clostridium] innocuum

text: [Clostridium] innocuum


text: TUM

text: public

text: Pure culture of Clostridium sporogenes DSM29420

text: mouse

text: Clostridium sporogenes

text: Clostridium sporogenes


text: TUM

text: public

text: Pure culture of Parabacteroides goldsteinii DSM29187

text: mouse

text: Parabacteroides goldsteinii

text: Parabacteroides goldsteinii


text: TUM

text: public

text: Pure culture of Proteus mirabilis DSM28629

text: mouse

text: Proteus mirabilis

text: Proteus mirabilis


text: TUM

text: public

text: Pure culture of Bacteroides vulgatus DSM28735

text: mouse

text: Bacteroides vulgatus

text: Bacteroides vulgatus


text: TUM

text: public

text: Pure culture of Clostridium mangenotii DSM29133

text: mouse

text: [Clostridium] mangenotii

text: [Clostridium] mangenotii


text: TUM

text: public

text: Pure culture of Terrisporobacter glycolicus DSM29186

text: mouse

text: Terrisporobacter glycolicus

text: Terrisporobacter glycolicus


text: TUM

text: public

text: Pure culture of Clostridium ramosum DSM29357

text: mouse

text: Erysipelatoclostridium ramosum

text: Erysipelatoclostridium ramosum


text: TUM

text: public

text: Pure culture of Anaerosalibacter bizertensis DSM29482

text: mouse

text: Anaerosalibacter bizertensis

text: Anaerosalibacter bizertensis


text: TUM

text: public

text: Pure culture of Oceanobacillus caeni DSM28620

text: mouse

text: Oceanobacillus caeni

text: Oceanobacillus caeni


text: TUM

text: public

text: Pure culture of Acetatifactor muris DSM23669

text: mouse

text: Acetatifactor muris

text: Acetatifactor muris


text: TUM

text: public

text: Pure culture of Clostridium sordellii DSM29974

text: mouse

text: [Clostridium] sordellii

text: [Clostridium] sordellii


text: TUM

text: public

text: Pure culture of Bacillus sp. DSM28590

text: mouse

text: Bacillus

text: Bacillus


text: TUM

text: public

text: Pure culture of Clostridium sp. DSM29421

text: mouse

text: Clostridium

text: Clostridium


text: TUM

text: public

text: Pure culture of Clostridium cochlearium DSM29358

text: mouse

text: Clostridium cochlearium

text: Clostridium cochlearium


text: TUM

text: public

text: Pure culture of Clostridium cocleatum DSM1551

text: mouse

text: [Clostridium] cocleatum

text: [Clostridium] cocleatum


text: TUM

text: public

text: Pure culture of Lactobacillus rodentium DSM24759

text: mouse

text: Lactobacillus rodentium

text: Lactobacillus rodentium


text: Klebsiella pneumoniae

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: strain


text: UMR 1014 SECALIM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UMR 1014 SECALIM

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Campylobacter jejuni Bf


text: Homo sapiens

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: Homo sapiens

text: Homo sapiens


Clostridium bouchedurhonense

characteristic: ENA-CHECKLIST

text: URMITE

text: public

text: Clostridium bouchedurhonense

characteristic: Submitter Id

text: Culturomics study of the human gut microbiota

text: Clostridium sp. AT5

text: Clostridium sp. AT5

text: Clostridium bouchedurhonense genome


Peptoniphilus phoceensis

text: URMITE

text: public

text: Peptoniphilus phoceensis

text: Peptoniphilus sp. SIT15

characteristic: organism

text: Peptoniphilus sp. SIT15

text: Peptoniphilus phoceensis genome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned sequence non specifically amplified from an uncultured pottery swab sample, Northern Ghana using trn-L cpDNA primers.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned non-specifically amplified sequence from an uncultured pottery swab sample, Northern Ghana, amplified using cpDNA trn-L primers.

characteristic: description

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L sequence from a pottery swab sample, Northern Ghana

text: Pinus environmental sample

text: Pinus environmental sample


DEMHIR

text: UNIVERSITY OF SOUTH BOHEMIA

text: public

text: DEMHIR

tag: Namespace:UNIVERSITY OF SOUTH BOHEMIA

text: Enterobacteriaceae bacterium symbiont of Maconellicoccus hirsutus

text: Gammaproteobacterial endosymbiont of Macconellicoccus hirsutus


GEFVIR

text: UNIVERSITY OF SOUTH BOHEMIA

text: public

text: GEFVIR

text: Enterobacteriaceae bacterium symbiont of Ferrisia virgata

text: Gammaproteobacterial symbiont of Ferrisia virgata


MEPMAR

text: UNIVERSITY OF SOUTH BOHEMIA

text: public

text: MEPMAR

text: Enterobacteriaceae bacterium symbiont of Paracoccus marginatus

text: Gammaproteobacterial endosymbiont of Paracoccus marginatus


HETPER

text: UNIVERSITY OF SOUTH BOHEMIA

text: public

text: HETPER

text: Enterobacteriaceae bacterium symbiont of Trionymus perrisii

text: Gammaproteobacterial endosymbiont of Trionymus perrisii


text: Mycobacterium tuberculosis

text: SC

text: public

text: Mycobacterium tuberculosis

characteristic: common name

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: ArrayExpress-Phenotype

text: Caenorhabditis elegans

characteristic: External Id

text: SC

text: public

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Raoultella ornithinolytica

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

text: public

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica


text: CBMSO

text: public

text: human

text: This project aims to define changes in the transcriptome and proteome associated with the gain of function of these proteins, as phenomenon that contrasts and prevents the development of proliferative aberrant cell phenotype associated with reduced expression of TIA1 and / or TIAR

text: Homo sapiens

text: Homo sapiens

text: Transcriptomic hek93_Homo_sapiens


E-MTAB-4237:RD BMI1 siRNA replicate #1

text: public

text: E-MTAB-4237:RD BMI1 siRNA replicate #1

tag: Namespace:Integrated Cancer Genomics Division Translational Genomics Research Institute

text: ArrayExpress

characteristic: broker name

text: RD

characteristic: cell line

text: human

text: Protocols: Samples were harvested 96hours after siRNA transfection BMI1 siRNA duplexes and non-targeting control siRNA duplexes were diluted in OptiMem and transfected at a final concentration of 15nM using Lipofectamine RNAiMAX Transfection Reagent diluted in OptiMem. RNA was extracted using Qiagen AllPrep DNA/RNA mini kit. RNA was quantity and integrity was determined using the Agilent Tapestation. A total of 500ng of high quality (eRIN 9) RNA was used for stranded mRNA library construction using Illuminas TruSeq Stranded Total RNA Sample Preparation Kit with Ribo-Zero Gold according to the manufacturers protocol. Resulting sequencing libraries were quantified and quality assessed with the Qubit Fluorometer and Agilent 2200 TapeStation, respectively.

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: technical replicate

text: RD BMI1 siRNA replicate #1


E-MTAB-4237:RD BMI1 siRNA replicate #2

text: Integrated Cancer Genomics Division Translational Genomics Research Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4237:RD BMI1 siRNA replicate #2

text: ArrayExpress

text: RD

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RD BMI1 siRNA replicate #2


E-MTAB-4237:RD BMI1 siRNA replicate #3

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-4237:RD BMI1 siRNA replicate #3

characteristic: Submitter Id

text: ArrayExpress

text: RD

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RD BMI1 siRNA replicate #3


name: E-MTAB-4237:RD control siRNA replicate #1

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: RD

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: RD control siRNA replicate #1

characteristic: title


name: E-MTAB-4237:RD control siRNA replicate #2

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: RD

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RD control siRNA replicate #2


name: E-MTAB-4237:RD control siRNA replicate #3

characteristic: External Id

text: public

text: ArrayExpress

text: RD

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RD control siRNA replicate #3


name: E-MTAB-4237:RH30 BMI1 siRNA replicate #1

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RH30 BMI1 siRNA replicate #1


name: E-MTAB-4237:RH30 BMI1 siRNA replicate #2

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RH30 BMI1 siRNA replicate #2


name: E-MTAB-4237:RH30 BMI1 siRNA replicate #3

text: public

text: ArrayExpress

characteristic: cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RH30 BMI1 siRNA replicate #3


name: E-MTAB-4237:RH30 control siRNA replicate #1

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: technical replicate

text: RH30 control siRNA replicate #1


name: E-MTAB-4237:RH30 control siRNA replicate #2

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RH30 control siRNA replicate #2


name: E-MTAB-4237:RH30 control siRNA replicate #3

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RH30 control siRNA replicate #3


text: public

characteristic: INSDC status

tag: Namespace:Institute of Biotechnology, Univerity of Helsinki

text: Enterococcus faecium

text: Enterococcus faecium

text: Commensal E. faecium isolate from non-hospitalised person, isolated from faeces in 1998


characteristic: ENA-CHECKLIST

text: BANG

text: public

text: Meloidogyne chitwoodi

text: Meloidogyne chitwoodi


text: OLD DOMINION UNIVERSITY

text: public

characteristic: SRA accession

tag: Namespace:OLD DOMINION UNIVERSITY

text: CCMP1005 Thalassiosira oceanica grown in f/2 media with 400 nM iron on a 14:10 light:dark cycle in 45 μE m-2 s-1

text: Thalassiosira oceanica CCMP1005

text: Thalassiosira oceanica CCMP1005


tag: attribute

text: OLD DOMINION UNIVERSITY

text: public

characteristic: Submitter Id

text: CCMP1005 Thalassiosira oceanica grown in f/2 media with 4 nM iron on a 14:10 light:dark cycle in 45 μE m-2 s-1

text: Thalassiosira oceanica CCMP1005

text: Thalassiosira oceanica CCMP1005

text: Thalassiosira oceanica CCMP1005 low iron low light colimitation


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MANCHESTER

text: public

text: Poaceae environmental sample

text: Poaceae environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial ribulose carboxylase gene locus, from a pottery swab sample, Northern Ghana

text: Poaceae environmental sample

characteristic: organism

text: Poaceae environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Clonedpartial trn-L sequence from a pottery swab sample, Northern Ghana

text: Pinus environmental sample

text: Pinus environmental sample

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L sequence from a pottery swab sample, Northern Ghana.

text: Pinus environmental sample

text: Pinus environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L sequence from a pottery swab sample, Northern Ghana

text: Pinus environmental sample

text: Pinus environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L DNA sequence from a pottery swab sample, northern Ghana

text: Pinus environmental sample

text: Pinus environmental sample


text: Institute of Biotechnology, Univerity of Helsinki

text: public

text: Clinical E. faecium isolate from hospitalised person, isolated from wound/soft tissue. Isolation year unknown

text: Enterococcus faecium

text: Enterococcus faecium

text: Enterococcus faecium E1165 isolate


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: Mouse ESCs

characteristic: ArrayExpress-CellType

text: ChIP FLAG M2

characteristic: ArrayExpress-Immunoprecipitate

text: ESCs

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

text: C57Bl/6N (JM8)

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: anti FLAG ChIP on tagged line replicate a

characteristic: sample description

text: Mus musculus

text: C57Bl/6N (JM8)

characteristic: strain


text: Mouse ESCs

text: ChIP FLAG M3

text: ESCs

text: male

text: Mus Musculus

text: C57Bl/6N (JM8)

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: anti FLAG ChIP on tagged line replicate b

text: Mus musculus

text: C57Bl/6N (JM8)


text: Mouse ESCs

text: ChIP FLAG M4

text: ESCs

text: male

text: Mus Musculus

text: C57Bl/6N (JM8)

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: anti FLAG ChIP on wt line replicate a

text: Mus musculus

text: C57Bl/6N (JM8)

characteristic: title


text: Mouse ESCs

characteristic: ArrayExpress-CellType

text: ChIP FLAG M5

characteristic: ArrayExpress-Immunoprecipitate

text: ESCs

text: male

text: Mus Musculus

characteristic: ArrayExpress-Species

text: C57Bl/6N (JM8)

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: anti FLAG ChIP on wt line replicate b

text: Mus musculus

text: C57Bl/6N (JM8)


text: Mouse ESCs

text: No

text: ESCs

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

text: C57Bl/6N (JM8)

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: input chromatin from tagged line replicate a

characteristic: sample description

text: Mus musculus

text: C57Bl/6N (JM8)


text: Mouse ESCs

text: No

text: ESCs

text: male

text: Mus Musculus

text: C57Bl/6N (JM8)

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: input chromatin from tagged line replicate b

text: Mus musculus

text: C57Bl/6N (JM8)

characteristic: strain


text: Mouse ESCs

text: No

text: ESCs

text: male

text: Mus Musculus

text: C57Bl/6N (JM8)

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: input chromatin from wt line replicate a

text: Mus musculus

text: C57Bl/6N (JM8)


text: Mouse ESCs

characteristic: ArrayExpress-CellType

text: No

characteristic: ArrayExpress-Immunoprecipitate

text: ESCs

text: male

text: Mus Musculus

characteristic: ArrayExpress-Species

text: C57Bl/6N (JM8)

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: input chromatin from wt line replicate b

text: Mus musculus

text: C57Bl/6N (JM8)

characteristic: title


text: Homo sapiens

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Pool of CRISPR screen pilot samples

text: Homo sapiens


text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 4 somites, collected at E8.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus


text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 15 somites, collected at E8.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 16 somites, collected at E8.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 16 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 28 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Anopheles Gambiae

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: OLD DOMINION UNIVERSITY

text: public

text: Thalassiosira weissflogii CCMP1010 grown in f/2 media with 400 nM iron on a 14:10 light:dark cycle in 45 μE m-2 s-1

characteristic: description

text: Thalassiosira weissflogii

text: Thalassiosira weissflogii

characteristic: title


characteristic: External Id

text: OLD DOMINION UNIVERSITY

text: public

text: Thalassiosira weissflogii CCMP1010 grown in f/2 media with 4 nM iron on a 14:10 light:dark cycle in 45 μE m-2 s-1

text: Thalassiosira weissflogii

text: Thalassiosira weissflogii


text: DTU

text: public

text: Staphylococcus hyicus

text: Staphylococcus hyicus

text: Shyicus


text: Genoscope CEA

text: public

tag: Namespace:Genoscope CEA

text: Bacillus methylotrophicus

text: Bacillus methylotrophicus

text: Prokaryotic genome sequencing


text: UNIVERSITY OF BERN

text: public

tag: Namespace:UNIVERSITY OF BERN

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERN

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: RNAseq_2_wt_gestational_colonisation_JM83_1


text: UNIVERSITY OF BERN

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: RNAseq_2_wt_gestational_colonisation_JM83_2


text: UNIVERSITY OF BERN

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: RNAseq_2_wt_gestational_colonisation_JM83_3


text: UNIVERSITY OF MANCHESTER

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: Cloned non-specifically amplified partial trn-L region from a pottery swab sample, Northern Ghana

text: unidentified plant

text: unidentified plant


text: UNIVERSITY OF MANCHESTER

text: public

text: Non-specifically amplified cloned DNA sequence from a pottery swa sample, Northern Ghana, amplified using plant trn-L primers.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned non specificaly amplified DNA sequence from a pottery swab sample, Northern Ghana, amplified using plant cpDNA primers.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L DNA sequence from a pottery swab sample, Northern Ghana.

text: Poaceae environmental sample

text: Poaceae environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Non specifically amplified cloned DNA sequence amplifie from a pottery swab sample from Northern Ghana using plant cpDNA primers.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned non specifically amplified DNA sequence from a pottery swab sample, Northern Ghana.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L cpDNA sequence from a pottery swab sample, Northern Ghana.

text: unidentified plant

text: unidentified plant


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned sequence non specifically amplified from a pottery swab sample, Northern Ghana, using plant cpDNA primers.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L gene sequence from the PCR product of a pottery swab sample, Northern Ghana.

text: unidentified plant

text: unidentified plant


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial unidentified trn-L sequence amplified from a pottery swab sample, Northern Ghana

text: Musa environmental sample

text: Musa environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Partial unidentified trn-L gene cpDNA sequence amplified from a pottery swab sample, Northern Ghana.

text: Poaceae environmental sample

text: Poaceae environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned unidentified partial trn-L cpDNA gene sequence from a pottery swab sample, Northern Ghana

text: Musa environmental sample

text: Musa environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned unidentified partial trn-L cpDNA gene sequence from a pottery swab sample, Northern Ghana.

text: Musa environmental sample

text: Musa environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned unidentified partial trn-L cpDNA sequence, from a pottery swab sample, Northern Ghana.

text: Musa environmental sample

text: Musa environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned unidentified DNA sequence non specifically amplified from a pottery swab sample, Northern Ghana.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: unidentified plant

text: unidentified plant


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned unidentified partial trn-L cpDNA sequence from a pottery swab sample, Northern Ghana

text: unidentified plant

text: unidentified plant


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned unidentified non specifically amplified sequence from a pottery swab sample, Northern Ghana

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L gene cpDNA sequence, from a pottery swab sample, Northern Ghana

text: Musa environmental sample

text: Musa environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Pinus environmental sample

text: Pinus environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L gene cpDNA sequence, from a pottery swab sample, Northern Ghana.

text: Pinus environmental sample

text: Pinus environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned unidentified partial trn-L gene cpDNA sequence, from a pottery swab sample, Northern Ghana.

text: Pinus environmental sample

text: Pinus environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned unidentified non specifically amplified DNA sequence from a pottery swab sample, Northern Ghana.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned unidentified non specifically amplified DNA sequence, from a pottery swab sample, Northern Ghana.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial ribulose carboxylase gene DNA sequence, from a pottery swab sample, Northern Ghana.

text: Poaceae environmental sample

text: Poaceae environmental sample


text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 17 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus


text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 18 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 19 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


text: Mus musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 20 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: UMR 1014 SECALIM

text: public

characteristic: Submitter Id

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni

text: Campylobacter jejuni Bf


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: CBMSO

text: public

text: Pseudorabies virus

text: The PRV str. Becker genome (GenBank JF797219.1) was cloned as a BAC using the pBLueLox plasmid generating the BAC pBecker2 that produces the vBecker2 virus by transfection. In this way were build BAC90 and BAC70. These BACs are used for the construction of recombinant viruses, and for the production of virus-free amplicons.

characteristic: description

text: Suid herpesvirus 1

text: Suid herpesvirus 1

text: pBAC90 and pBAC70 sequences

characteristic: title


characteristic: External Id

text: IFR

text: public

text: Ruminococcus gnavus ATCC35913 from culture collection, originally human gut isolate

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus

text: Ruminococcus gnavus ATCC 35913


text: Oesophagus

characteristic: ArrayExpress-Phenotype

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Oesophagus

text: male

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

characteristic: sample description

text: Mus musculus


text: Normal

text: female

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Normal

text: male

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


text: UB

text: public

characteristic: Submitter Id

text: Zaire ebolavirus

text: RNA isolated from oral swab resuspended in 140 µl buffer AVL

unit: KB

characteristic: estimated size

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

characteristic: organism

text: Swab

text: Zaire ebolavirus

text: MinION (Oxford Nanopore Technologies), SQK-MAP005/R7.3 chemistry

characteristic: seq meth

text: Ebolavirus surveillance using portable nanopore sequencing sample EM_SL_KAMB_2015_20380


characteristic: ENA-LAST-UPDATE

text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 140 µl serum

characteristic: description

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample KAM0508124

characteristic: title


characteristic: External Id

text: CNRS

text: public

text: metagenome

text: metagenome

text: DUWL disinfectants


characteristic: ENA-CHECKLIST

text: EMBL-EBI

text: public

text: ArrayExpress

characteristic: broker name

text: Protocols: All mice were housed in the same husbandry conditions within the Biological Resources Unit in the Cancer Research UK-Cambridge Institute under a Home Office Licence. C57BL/6J and CAST/EiJ mouse strains were used in experiments as parental strains (F0) as well as for breeding of reciprocal crosses of F1 mice. All mice used in the experiments were males between eight and 12 weeks of age, and harvested at the same time of day (between 8 and 11am). Liver perfusion was performed on mice post mortem, prior to tissue dissection. Harvested tissues were formaldehyde cross-linked for ChIP-seq experiments. Before cross-linking, dissected tissue was immediately chopped post mortem and added to a cross-linking solution containing 1% formaldehyde. Tissue was incubated for 20 min prior to quenching with 1/20th volume of 2.5 M glycine. Samples were incubated for a further 10 min before washing with PBS and flash-freezing and storage at -80oC. The ChIP-seq protocol was as described by Schmidt et al. (2009). Protein-bound DNA was immunoprecipitated with 10g of an antibody against CEBPA (Santa Cruz, sc-9314), HNF4A (ARP 31946_P050), FOXA1 (ab5089, Abcam), H3K27ac (ab4729, Abcam), or H3K4me3 (Millipore 05-1339). Immunoprecipitated DNA was end-repaired, A-tailed, and Illumina sequencing adapters ligated before 16 cycles of PCR amplification.

text: 8 - 12 weeks

characteristic: development stage

characteristic: genotype

characteristic: individual

text: Mus

text: Mus

text: liver

characteristic: organism part

text: Mus

text: male

characteristic: sex

text: mus musculus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: 8 - 12 weeks

text: C57BL/6J x CAST/EiJ

text: Mus

text: Mus

text: liver

text: Mus

text: male

text: mus musculus x mus castaneus


characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: 8 - 12 weeks

text: CAST/EiJ x C57BL/6J

text: Mus

characteristic: organism

text: Mus

text: liver

text: Mus

text: male

text: mus castaneus x mus musculus


characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: ArrayExpress

characteristic: broker name

text: 8 - 12 weeks

text: C57BL/6J x CAST/EiJ

text: Mus

text: Mus

text: liver

text: Mus

text: male

text: mus musculus

characteristic: title


text: EMBL-EBI

text: public

text: ArrayExpress

text: 8 - 12 weeks

characteristic: development stage

text: CAST/EiJ

characteristic: genotype

characteristic: individual

text: Mus

text: Mus

text: liver

characteristic: organism part

text: Mus

text: male

text: mus castaneus


characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Protocols: All mice were housed in the same husbandry conditions within the Biological Resources Unit in the Cancer Research UK-Cambridge Institute under a Home Office Licence. C57BL/6J and CAST/EiJ mouse strains were used in experiments as parental strains (F0) as well as for breeding of reciprocal crosses of F1 mice. All mice used in the experiments were males between eight and 12 weeks of age, and harvested at the same time of day (between 8 and 11am). Liver perfusion was performed on mice post mortem, prior to tissue dissection. Harvested tissues were formaldehyde cross-linked for ChIP-seq experiments. Before cross-linking, dissected tissue was immediately chopped post mortem and added to a cross-linking solution containing 1% formaldehyde. Tissue was incubated for 20 min prior to quenching with 1/20th volume of 2.5 M glycine. Samples were incubated for a further 10 min before washing with PBS and flash-freezing and storage at -80oC. To create HNF4A and CEBPA heterozygous knockout mice, we acquired mice with targeted alleles from JAX (www.jax.com) (HNF4A stock number: 004665 (Hayhurst et al. 2001); CEBPA stock number: 006230 (Zhang et al. 2004)). Heterozygous knockouts were generated via the Cre-loxP system (Orban et al. 1992) using the germline deleter strain PgkCre (Lallemand et al. 1998) and crossing it to CebpaFLOX/FLOX and Hnf4aFLOX/WT mice. Ear biopsies were taken at the time of weaning for genotyping to confirm deletion via PCR

text: 8 - 12 weeks

text: floxed allele

characteristic: genetic modification

text: Hnf4a FLOX/-

text: Mus

text: Mus

text: liver

text: Mus

text: male

characteristic: sex

text: mus musculus

characteristic: strain


characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: 8 - 12 weeks

text: floxed allele

text: CepbaFLOX/-

text: Mus

text: Mus

text: liver

text: Mus

text: male

text: mus musculus


characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: 8 - 12 weeks

text: Mus

characteristic: organism

text: Mus

text: liver

text: Mus

text: male

text: mus castaneus


text: public

tag: Namespace:School of Biological Sciences, The University of Hong Kong

text: mangrove covering field sediments

text: sediment metagenome

text: sediment metagenome

characteristic: title


text: School of Biological Sciences, The University of Hong Kong

text: public

text: mangrove covering field sediments

text: sediment metagenome

text: sediment metagenome


text: public

text: intertidal mudflats sediments

text: sediment metagenome

text: sediment metagenome


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: sample description

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

tag: Namespace:Department of Orthopaedic Surgery, Boston Childrens Hospital, Harvard Medical School, Boston, MA, USA

characteristic: age

text: ArrayExpress

characteristic: broker name

text: pig

text: Protocols: 18 adolescent female Yorkshire pigs (E.M. Parsons & Sons Inc., Hadley, MA), aged 83-96 days and weighing 31-37 kg, were randomly assigned to one of three groups: ACL transection (ACLT), ACL transection followed by injection of 20 mg triamcinolone acetonide injection (STEROID), and no surgery (INTACT control; n=6 for all groups). In the ACLT and STEROID groups, the ACL was transected at the junction of the proximal and middle thirds as previously described. No post-operative immobilization was used. Pigs were housed in single cages with ad libitum access to water and were fed three times daily. No adverse event was observed throughout the experiment. After 14 days, the animals were euthanized and synovial fluid was drawn from the joints. Adjacent biopsies of the lateral synovial membrane (distant from the site of the original surgery) were collected, placed into sterile tubes (for RNA extraction) or embedded in optimal cutting temperature medium (OCT; Sakura Finetek, Torrance, CA) (for histology), frozen in liquid nitrogen and stored at -80C until processed for further analysis. The ACL transection was immediately followed by injection of 20 mg triamcinolone acetone in this group. Total RNA was extracted from the synovial membranes through homogenization, phenol-chloroform separation and on-column purification using the PureLinkTM RNA Mini Kit (Life technologies, Carlsbad, CA). RNA samples were treated with DNAse I (PureLinkTM DNase Set, Life technologies, Carlsbad, CA) and assessed with the 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA). The samples were then enriched for polyA+ messenger RNA, reverse transcribed with random hexamers, ligated with indexed adapters and amplified with 15 cycles of PCR using the TruSeq RNA Sample Preparation Kit v2 (Illumina, San Diego, CA).

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: female


characteristic: ENA-LAST-UPDATE

text: Department of Orthopaedic Surgery, Boston Childrens Hospital, Harvard Medical School, Boston, MA, USA

characteristic: INSDC first public

text: public

text: ArrayExpress

text: pig

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: female

characteristic: sex


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: pig

text: osteoarthritis of the knee

characteristic: disease

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: female


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

text: pig

text: Protocols: 18 adolescent female Yorkshire pigs (E.M. Parsons & Sons Inc., Hadley, MA), aged 83-96 days and weighing 31-37 kg, were randomly assigned to one of three groups: ACL transection (ACLT), ACL transection followed by injection of 20 mg triamcinolone acetonide injection (STEROID), and no surgery (INTACT control; n=6 for all groups). In the ACLT and STEROID groups, the ACL was transected at the junction of the proximal and middle thirds as previously described. No post-operative immobilization was used. Pigs were housed in single cages with ad libitum access to water and were fed three times daily. No adverse event was observed throughout the experiment. After 14 days, the animals were euthanized and synovial fluid was drawn from the joints. Adjacent biopsies of the lateral synovial membrane (distant from the site of the original surgery) were collected, placed into sterile tubes (for RNA extraction) or embedded in optimal cutting temperature medium (OCT; Sakura Finetek, Torrance, CA) (for histology), frozen in liquid nitrogen and stored at -80C until processed for further analysis. Total RNA was extracted from the synovial membranes through homogenization, phenol-chloroform separation and on-column purification using the PureLinkTM RNA Mini Kit (Life technologies, Carlsbad, CA). RNA samples were treated with DNAse I (PureLinkTM DNase Set, Life technologies, Carlsbad, CA) and assessed with the 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA). The samples were then enriched for polyA+ messenger RNA, reverse transcribed with random hexamers, ligated with indexed adapters and amplified with 15 cycles of PCR using the TruSeq RNA Sample Preparation Kit v2 (Illumina, San Diego, CA).

characteristic: description

text: osteoarthritis of the knee

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: female


text: CENTRE FOR ECOLOGY AND HYDROLOGY

text: public

tag: Namespace:CENTRE FOR ECOLOGY AND HYDROLOGY

text: Annika Perry

characteristic: collected by

text: Monterey pine

characteristic: common name

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Pinus radiata

characteristic: organism

text: Pinus radiata

text: needle

characteristic: tissue type

text: Pinus radiata needle RNA

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UOM

characteristic: INSDC center name

text: public

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Cartilage was obtained under Ethics Committee approval with written informed consent from 8 patients with symptomatic OA at total knee replacement (n=8, age range 65-79 years, mean age 70.3). Cartilage from paired osteochondral samples were isolated from the intact PLC (posterior lateral condyle) and the damaged DMC (distal medial condyle) for RNA-seq analysis. Strand specific RNA-seq libraries were generated from 0.5-1 g RNA using the TruSeq Stranded mRNA assay (Illumina, Inc.) using the manufacturers Stranded mRNA Sample Preparation Kit and 101bp paired-end reads were generated with each sample yielding at least 39 million total reads. Total RNA was extracted from 200-400 mg of cartilage using TRIzol (Life-technologies) reagent and homogenisation (Braun Mikrodismembrator) following freezing in liquid nitrogen. The RNA was purified using RNeasy Qiagen clean-up columns (Qiagen) and for sequencing had a RIN score of >6 (2200 TapeStation, Agilent Technologies).

text: osteoarthritis of the knee

characteristic: modified mankin score

text: Homo sapiens

text: Homo sapiens

text: cartilage

characteristic: organism part

characteristic: patient number

text: Damaged

characteristic: phenotype

text: Homo sapiens

characteristic: sequencing date

text: male


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UOM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: osteoarthritis of the knee

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Intact

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UOM

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: osteoarthritis of the knee

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: cartilage

text: Damaged

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

text: UOM

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: osteoarthritis of the knee

characteristic: modified mankin score

text: Homo sapiens

text: Homo sapiens

text: cartilage

characteristic: organism part

characteristic: patient number

text: Intact

characteristic: phenotype

text: Homo sapiens

characteristic: sequencing date

text: female


characteristic: External Id

text: ncrnalab

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: INPUT - Ago2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ncrnalab

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: INPUT - Ago2+Pkd1


characteristic: ENA-CHECKLIST

text: ncrnalab

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: IP - Ago2

characteristic: title


text: ncrnalab

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: IP - Ago2+Pkd1


text: ANIMAL HEALTH TRUST

text: public

tag: Namespace:ANIMAL HEALTH TRUST

characteristic: collection date

text: Streptococcus zooepidemicus strain 1175 from a placental swab from a horse.

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Horse

characteristic: host

text: Placental swab

characteristic: isolation source

text: Streptococcus equi subsp. zooepidemicus

text: Streptococcus equi subsp. zooepidemicus

text: Streptococcus zooepidemicus from a horse


text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

characteristic: sample description

text: Homo sapiens


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 18 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


text: Whole embryo

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 19 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: title


text: Whole embryo

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 20 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 21 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus


text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 23 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Whole embryo

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype female C57BL/6N mouse embryo with 26 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype male C57BL/6N mouse embryo with 26 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single second generation genotypically wildtype male C57BL/6N mouse embryo with 27 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: title


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype male C57BL/6N mouse embryo with 34 somites, collected at E10.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype C57BL/6N mouse embryo with 28 somites, collected at E9.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus


text: Whole embryo

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype female C57BL/6N mouse embryo with 35 somites, collected at E10.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single second generation genotypically wildtype male C57BL/6N mouse embryo with 36 somites, collected at E10.5. The embryo comes from a mixed G0 lineage of heterozygous animals. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


E. coli

text: public

text: E. coli

tag: Namespace:WELLCOME TRUST CENTRE FOR HUMAN GENETICS, UNIVERSITY OF OXFORD

text: Escherichia coli K-12

characteristic: organism

characteristic: reference URL

characteristic: reference id

text: Escherichia coli K-12


E. coli-R3b

characteristic: External Id

text: WELLCOME TRUST CENTRE FOR HUMAN GENETICS, UNIVERSITY OF OXFORD

characteristic: INSDC first public

text: public

text: E. coli-R3b

text: Escherichia coli K-12

text: Escherichia coli K-12


E. coli-R4

characteristic: INSDC last update

text: public

text: E. coli-R4

text: Escherichia coli K-12

text: Escherichia coli K-12


E. coli-R4b

text: public

text: E. coli-R4b

text: Escherichia coli K-12

text: Escherichia coli K-12


text: Escherichia coli

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Escherichia coli

characteristic: common name

text: Escherichia coli

text: Escherichia coli

characteristic: title


text: Klebsiella pneumoniae

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: GSC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: This sample represents co-assembled raw reads from multiple single-cell samples. Each member single-cell sample was isolated by the flow cytometry technique from a Tara Oceans environmental sample.

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

text: ERS999549, ERS999550, ERS999551, ERS999552

characteristic: member sample

text: in silico mixture

characteristic: mixed sample

text: Bathycoccus sp. TOSAG39-1

text: Tara Oceans expedition (2009-2013)

characteristic: project name

text: Bathycoccus sp. TOSAG39-1


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: GSC

characteristic: INSDC center name

text: public

text: TARA_BCB-ARAI_ARBI_ARCI_ARDI_AREI_ARFI_ALP-KF_KG

text: marine biome (ENVO:00000447)

text: ERS999553, ERS999554, ERS999555, ERS999556, ERS999557, ERS999558, ERS999563, ERS999564

text: in silico mixture

text: Chrysophyceae sp. TOSAG23-4

characteristic: organism

text: Tara Oceans expedition (2009-2013)

text: Chrysophyceae sp. TOSAG23-4


characteristic: External Id

text: GSC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: marine biome (ENVO:00000447)

text: ERS999559, ERS999560, ERS999561, ERS999562

text: in silico mixture

text: Chrysophyceae sp. TOSAG23-5

text: Tara Oceans expedition (2009-2013)

text: Chrysophyceae sp. TOSAG23-5


text: GSC

text: public

text: marine biome (ENVO:00000447)

text: ERS999569, ERS999570

text: in silico mixture

text: Stramenopiles sp. TOSAG23-6

text: Tara Oceans expedition (2009-2013)

text: Stramenopiles sp. TOSAG23-6


text: GSC

text: public

text: marine biome (ENVO:00000447)

text: ERS999571, ERS999572, ERS999573, ERS999574

text: in silico mixture

text: Stramenopiles sp. TOSAG41-2

text: Tara Oceans expedition (2009-2013)

text: Stramenopiles sp. TOSAG41-2


text: GSC

text: public

text: marine biome (ENVO:00000447)

text: ERS999575, ERS999576, ERS999577, ERS999578, ERS999579, ERS999580

text: in silico mixture

text: Stramenopiles sp. TOSAG23-1

text: Tara Oceans expedition (2009-2013)

text: Stramenopiles sp. TOSAG23-1


text: GSC

text: public

text: marine biome (ENVO:00000447)

text: ERS970950, ERS970951, ERS970952, ERS970953, ERS333069

text: in silico mixture

text: Stramenopiles sp. TOSAG23-2

text: Tara Oceans expedition (2009-2013)

text: Stramenopiles sp. TOSAG23-2


text: GSC

text: public

text: TARA_BCB-ABAI_ABBI_ABCI_ABDI_ALP-KH_KI_KK_KL

text: marine biome (ENVO:00000447)

text: ERS999581, ERS999582, ERS999583, ERS999584, ERS999585, ERS999565, ERS999566, ERS999567, ERS999568

text: in silico mixture

text: Stramenopiles sp. TOSAG23-3

text: Tara Oceans expedition (2009-2013)

text: Stramenopiles sp. TOSAG23-3


text: GSC

text: public

text: marine biome (ENVO:00000447)

text: ERS999586, ERS999587, ERS999588, ERS999589

text: in silico mixture

text: Stramenopiles sp. TOSAG41-1

text: Tara Oceans expedition (2009-2013)

text: Stramenopiles sp. TOSAG41-1


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (CCCTATGGCCC) is bases 11 to 21 of read 1 followed by CG and polyT.

characteristic: sample description

text: Mus musculus

characteristic: title


text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (GACAAAGAGAA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (AACCACAGCAC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (CAGGTGACGGC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (GAGTCGCGACG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (AGGAACTACAC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (GGGCTCCGACA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (CAACGCCAAAA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TACCTAACGCA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (CATAATGGCGA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (ACGAGACACCC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (AGTACTACGCG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TAGGTGAGAAA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (GCTTGAGGACC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (ACGCAGAGAGA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (AAAGAATCGCC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (GGCTTAAGAGA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (CTCCACGCAAG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Mus musculus