text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Feb 19, 2013

text: Denmark, Kopenhagen

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY MEDICAL CENTER UTRECHT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY MEDICAL CENTER UTRECHT

characteristic: Submitter Id

text: Jan 02, 2013

characteristic: collection date

text: Denmark, Kopenhagen

characteristic: geographic location (country and/or sea)

text: clinical/host-associated

characteristic: isolation source

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Dec 16, 2013

text: Denmark, Kopenhagen

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Mar 02, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Mar 21, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 02, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Mar 29, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 01, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Mar 28, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 03, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 10, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 09, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 07, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 08, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: May 13, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jun 26, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jul 01, 2013

text: Netherlands, Sittard

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


Xtrop-metagenomic

text: EGCE

text: public

text: Xtrop-metagenomic

text: western clawed frog

characteristic: common name

characteristic: dev stage

text: Xenopus (Silurana) tropicalis

text: Xenopus (Silurana) tropicalis

text: Gut

characteristic: tissue type

text: Xenopus tadpole metagenomic


Xtrop-metatranscriptomic

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EGCE

text: public

text: Xtrop-metatranscriptomic

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: Xenopus (Silurana) tropicalis

text: Gut

text: Xenopus tadpole metatranscriptomic


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHE

text: public

characteristic: description

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: strain

type: has member


text: PHE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Aug 08, 2012

characteristic: collection date

text: Netherlands, Utrecht

characteristic: geographic location (country and/or sea)

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 17, 2013

text: Netherlands, Utrecht

text: clinical/host-associated

characteristic: isolation source

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 19, 2013

text: Netherlands, Utrecht

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 21, 2013

text: Netherlands, Utrecht

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jul 26, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jul 19, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jun 01, 2004

text: Germany, Muenster

text: environmental/food/other

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Dec 27, 2005

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jan 04, 2006

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jan 02, 2006

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


Viburnum lanata1

text: public

text: Viburnum lanata1

tag: Namespace:IASMA RESEARCH CENTRE - FONDAZIONE EDMUND MACH

text: In the present study, we report the characterization of the transcripts expressed in the shrub species Viburnum lantana L. (Wayfaring Tree) during treatment with ozone (60 ppb for 45 days, 5 hours per day). Suppression subtractive hybridization (SSH) was used with the aim to assess the biological relevance of the ozone treatment on the induced (I) and repressed (R) libraries, in order to present an overview of the effect of ozone at the biological, cellular and molecular level and to reveal the differences in the expression of the transcripts during the ozone exposure. A total of 38,800 and 12,495 high quality reads were obtained using SSH and 454-pyrosequencing, representing a total of 1241 unigenes in Ensembl transcriptome. mRNA abundance was measured by reads per kilobase per million (RPKM), and over-expression of the transcripts with GO categories revealed involved in the defense against oxidative stress, glutathione (GSH) and thioredoxin-1 (Trx1). On the contrary, GO categories involved in carbon utilization and photosynthesis (light harvesting complexes) was found to be repressed in ozone exposed plants suggesting the activation of the enriched GO terms as a molecular defense of the plant metabolic machinery to ozone response. Functional ontological analysis revealed several important stress related categories and expression differences in the induced and repressed libraries showed couple of transcripts demonstrating up- and down-regulation linked with several important biological functions.

characteristic: description

text: Viburnum lantana

text: Viburnum lantana

text: Ozone stress in Viburnum lantana


Viburnum lanata2

text: IASMA RESEARCH CENTRE - FONDAZIONE EDMUND MACH

text: public

text: Viburnum lanata2

text: Viburnum lantana

text: Viburnum lantana

text: Ozone stress in Viburnum lantana


text: UNIVERSIDADE DE SAO PAULO

text: public

tag: Namespace:UNIVERSIDADE DE SAO PAULO

text: Lucia Garcez Lohmann

characteristic: collected by

text: Peru

text: Lucia Garcez Lohmann

characteristic: identified by

text: Tanaecium tetragonolobum

text: Tanaecium tetragonolobum

text: Lohmann 619 MO

characteristic: specimen voucher

text: leaf

characteristic: tissue lib

text: leaf

characteristic: tissue type

text: raw reads


Rubeoparvulum massiliensis

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rubeoparvulum massiliensis

text: Bacillaceae bacterium mt6

text: Bacillaceae bacterium mt6

characteristic: strain

text: Rubeoparvulum massiliensis mt6


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

characteristic: Submitter Id

text: Jul 12, 2004

characteristic: collection date

text: Germany, Muenster

characteristic: geographic location (country and/or sea)

text: clinical/host-associated

characteristic: isolation source

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jul 14, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jul 03, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jul 15, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Aug 07, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Aug 03, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Sep 09, 2003

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Apr 13, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jun 01, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jul 05, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jul 26, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jul 16, 2004

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: WUR

text: public

text: Rotterdam Zoo

characteristic: description

text: Sus cebifrons

text: Sus cebifrons

text: Sus cebifrons Negros


text: WUR

characteristic: INSDC center name

text: public

text: San Diego Zoo

text: Sus cebifrons

text: Sus cebifrons

text: Sus cebifrons Panay


text: UNIVERSIDADE DE SAO PAULO

characteristic: INSDC first public

text: public

text: Lucia Garcez Lohmann

characteristic: collected by

text: Peru

text: Lucia Garcez Lohmann

characteristic: identified by

text: Tanaecium tetragonolobum

text: Tanaecium tetragonolobum

text: Lohmann 619 MO

characteristic: specimen voucher

text: leaf

characteristic: tissue lib

text: leaf

characteristic: tissue type

text: cleaned reads


text: UNIVERSITY MEDICAL CENTER UTRECHT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jul 19, 2004

characteristic: collection date

text: Germany, Muenster

text: environmental/food/other

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Dec 05, 2005

text: Germany, Muenster

characteristic: geographic location (country and/or sea)

text: clinical/host-associated

characteristic: isolation source

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY MEDICAL CENTER UTRECHT

characteristic: INSDC center name

text: public

text: Dec 22, 2005

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

characteristic: INSDC first public

text: public

text: Dec 27, 2005

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jan 02, 2006

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: Univie

text: public

text: Draft genome sequence of the phototrophic nitrite-oxidizing bacterium Thiocapsa sp. strain KS1

characteristic: description

text: Germany

text: municipal wastewater treatment plant Konstanz

text: Thiocapsa sp. KS1

text: Thiocapsa sp. KS1

characteristic: strain

text: Thiocapsa KS1 draft genome sequence


text: WUR

characteristic: INSDC last update

text: public

text: domestic pig

characteristic: common name

text: Netherlands

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Pietrain breed


text: ST JUDE CHILDRENS RESEARCH HOSPITAL

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ST JUDE CHILDRENS RESEARCH HOSPITAL

text: house mouse

text: Mus musculus

text: Mus musculus


text: ST JUDE CHILDRENS RESEARCH HOSPITAL

text: public

characteristic: Submitter Id

text: house mouse

text: Pax5+/-,129XC57, ENU, Female

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: ST JUDE CHILDRENS RESEARCH HOSPITAL

text: public

text: house mouse

text: Pax5+/-,129XC57, ENU, Male

text: Mus musculus

text: Mus musculus


text: ST JUDE CHILDRENS RESEARCH HOSPITAL

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: wt


text: ST JUDE CHILDRENS RESEARCH HOSPITAL

text: public

text: house mouse

text: BM B220+

text: Mus musculus

text: Mus musculus

text: wt


text: ST JUDE CHILDRENS RESEARCH HOSPITAL

text: public

text: house mouse

text: spleen B220+

text: Mus musculus

text: Mus musculus

text: wt


text: UP

text: public

text: Equisetum giganteum

text: Equisetum giganteum

text: stem and leaf

characteristic: tissue type

text: Equisetum giganteum transcriptome


Clostridium niameyense

text: URMITE

text: public

text: Clostridium niameyense

text: Clostridium sp. mt5

text: Clostridium sp. mt5

text: Clostridium niameyense genome


Drancourtella massiliensis

text: URMITE

text: public

text: Drancourtella massiliensis

text: Ruminococcaceae bacterium GD1

text: Ruminococcaceae bacterium GD1

text: Drancourtella massiliensis genome


Listeria ivanovii

text: URMITE

text: public

text: Listeria ivanovii

text: Listeria ivanovii subsp. ivanovii PAM 55

text: Listeria ivanovii genome


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jan 04, 2006

characteristic: collection date

text: Germany, Muenster

characteristic: geographic location (country and/or sea)

text: clinical/host-associated

characteristic: isolation source

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Jan 05, 2006

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY MEDICAL CENTER UTRECHT

characteristic: INSDC center name

text: public

text: Sep 08, 2003

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


S. pneumoniae R6-Dp1_R

text: ULAVAL

characteristic: INSDC first public

text: public

text: S. pneumoniae R6-Dp1_R

text: S. pneumoniae R6 resistant to phage Dp-1

characteristic: description

text: Streptococcus pneumoniae R6

text: Streptococcus pneumoniae R6

text: S. pneumoniae R6 bacteriophage-insensitive mutant


S. pneumoniae R6-SOCP_R

text: ULAVAL

characteristic: INSDC last update

text: public

text: S. pneumoniae R6-SOCP_R

text: S. pneumoniae R6 resistant to phage SOCP

text: Streptococcus pneumoniae R6

text: Streptococcus pneumoniae R6


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

characteristic: INSDC status

text: Jan 02, 2006

text: Germany, Muenster

text: clinical/host-associated

text: Enterococcus faecium

text: Enterococcus faecium


text: BIHP, INSTITUT PASTEUR

text: public

characteristic: SRA accession

tag: Namespace:BIHP, INSTITUT PASTEUR

text: Leishmania major

text: Leishmania major

text: CRISPR-Cas9 edited Leishmania major (strain:Friedlin)


marc_E_coli_K12_DSM 18039_2

text: ZF-SCREENS B.V.

text: public

text: marc_E_coli_K12_DSM 18039_2

tag: Namespace:ZF-SCREENS B.V.

characteristic: Submitter Id

text: Escherichia coli str. K-12 substr. MG1655

characteristic: reference id


HEPPS

characteristic: ENA-CHECKLIST

text: Division of Microbial Ecology

text: public

text: HEPPS

tag: Namespace:Division of Microbial Ecology

text: Porcellio scaber

characteristic: host

text: Candidatus Hepatoplasma crinochetorum

text: Candidatus Hepatoplasma crinochetorum

text: Ps

characteristic: strain

text: midgut glands (hepatopancreas)

characteristic: tissue type

text: Cand. Hepatoplasma crinochetorum Ps


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Ghent University, Faculty of Veterinary Medicine

text: An Martel

characteristic: collected by

text: Devriesea agamarum

text: Devriesea agamarum

text: Devriesea agamarum genome


Brassica juncea1

text: public

text: Brassica juncea1

text: Redox state homeostasis has been recently emerged as “central” or “core” regulator of signaling under different stress as well as developmental stimuli in plants, bacteria and animals. The regulation through redox state is mediated at the level of miRNA, mRNA and proteins. The miRNAs are the class of small nucleotide (21-22 nts) RNA which functions to regulate the level of corresponding mRNA and thereby regulate the protein abundance. In an earlier research, thiourea was successfully established, as a tool, to study redox regulated components of salt and arsenic stress tolerance in different plants. In view of this, the present study was performed to identify thiourea regulated miRNAs from Indian mustard (Brassica juncea) which are responsible for salt stress perception and tolerance.

text: Brassica juncea

characteristic: organism

text: Brassica juncea

text: Identification of novel and conserved miRNAs responsible for redox mediated regulation of salt tolerance in Brassica juncea

characteristic: title


Brassica juncea2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Brassica juncea2

text: Brassica juncea

text: Brassica juncea


Brassica juncea3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Brassica juncea3

text: Brassica juncea

text: Brassica juncea


Brassica juncea4

characteristic: INSDC last update

text: public

text: Brassica juncea4

characteristic: description

text: Brassica juncea

text: Brassica juncea


Brassica juncea5

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Brassica juncea5

text: Brassica juncea

text: Brassica juncea


Brassica juncea6

text: public

text: Brassica juncea6

characteristic: Submitter Id

text: Brassica juncea

text: Brassica juncea


Brassica juncea7

characteristic: ENA-CHECKLIST

text: public

text: Brassica juncea7

text: Brassica juncea

text: Brassica juncea


Brassica juncea8

text: public

text: Brassica juncea8

text: Brassica juncea

text: Brassica juncea


Brassica juncea9

text: public

text: Brassica juncea9

text: Brassica juncea

text: Brassica juncea


Brassica juncea10

text: public

text: Brassica juncea10

text: Brassica juncea

text: Brassica juncea


Brassica juncea11

text: public

text: Brassica juncea11

text: Brassica juncea

text: Brassica juncea


Brassica juncea12

text: public

text: Brassica juncea12

text: Brassica juncea

text: Brassica juncea


Brassica juncea14

text: public

text: Brassica juncea14

text: Brassica juncea

text: Brassica juncea


Brassica juncea15

text: public

text: Brassica juncea15

text: Brassica juncea

text: Brassica juncea


Brassica juncea16

text: public

text: Brassica juncea16

text: Brassica juncea

text: Brassica juncea


Brassica juncea13

text: public

text: Brassica juncea13

text: Brassica juncea

text: Brassica juncea


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Dec 22, 2005

characteristic: collection date

text: Germany, Muenster

characteristic: geographic location (country and/or sea)

text: clinical/host-associated

characteristic: isolation source

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: JUSTUS LIEBIG UNIVERSITAT

text: public

tag: Namespace:JUSTUS LIEBIG UNIVERSITAT

text: Enterobacter sp. 247

text: Enterobacter sp. 247

text: Enterobacter bugandensis


text: INRA JOUY-EN-JOSAS

text: public

tag: Namespace:INRA JOUY-EN-JOSAS

text: cattle

characteristic: common name

text: Bos taurus

text: Bos taurus

text: GENOME-WIDE STUDY OF STRUCTURAL VARIANTS IN BOVINE


text: public

text: Germany

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: serovar


Alloactinosynnema sp. L-07

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Alloactinosynnema sp. L-07

tag: Namespace:National Center for Genome Resources (NCGR)

text: Complete genome sequence of Alloactinosynnema sp. L-07, a novel bacterial isolate from extreme cave environments.

text: Alloactinosynnema sp. L-07

characteristic: isolate

text: Alloactinosynnema sp. L-07

text: Alloactinosynnema sp. L-07

characteristic: strain

text: Genome Sequencing of Novel Bacterial Isolate, Alloactinosynnema sp. L-07

characteristic: title


Zostera muelleri1

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Zostera muelleri1

tag: Namespace:UNIVERSITY OF TECHNOLOGY, SYDNEY

characteristic: Submitter Id

text: Zostera muelleri

text: Zostera muelleri

text: Investigating the effects of varying light regimes on Zostera muelleri using a transcriptomics approach


Zostera muelleri2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

text: public

text: Zostera muelleri2

text: Zostera muelleri

text: Zostera muelleri


Zostera muelleri3

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

text: public

text: Zostera muelleri3

text: Zostera muelleri

text: Zostera muelleri


Zostera muelleri4

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

text: public

text: Zostera muelleri4

text: Zostera muelleri

text: Zostera muelleri


Zostera muelleri5

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

text: public

text: Zostera muelleri5

text: Zostera muelleri

text: Zostera muelleri


Zostera muelleri6

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

text: public

text: Zostera muelleri6

text: Zostera muelleri

text: Zostera muelleri


Zostera muelleri7

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

text: public

text: Zostera muelleri7

text: Zostera muelleri

text: Zostera muelleri


Zostera muelleri8

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

text: public

text: Zostera muelleri8

text: Zostera muelleri

text: Zostera muelleri


Zostera muelleri9

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

text: public

text: Zostera muelleri9

text: Zostera muelleri

text: Zostera muelleri


text: public

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Yes

text: Escherichia coli

text: Escherichia coli


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

text: sediment metagenome from the ambient pH reference site

characteristic: description

text: marine metagenome

characteristic: organism

text: marine metagenome

text: marine sediment metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

text: public

text: sediment metagenome from the low pH site with low hydrothermal vent influence

text: marine metagenome

text: marine metagenome

text: marine sediment metagenome


characteristic: INSDC center name

text: public

tag: Namespace:WASHINGTON UNIVERSITY  SCHOOL OF MEDICINE

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Infant


text: WASHINGTON UNIVERSITY SCHOOL OF MEDICINE

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Infant

characteristic: title


text: MAX F. PERUTZ LABORATORIES

characteristic: INSDC first public

text: public

tag: Namespace:MAX F. PERUTZ LABORATORIES

text: RADseq data of field-caught indivduals from Bretagne/Normandie (France)

text: Clunio marinus

text: Clunio marinus

text: Bretagne-Normandie-RADseq


PSHI

text: SIB

characteristic: INSDC last update

text: public

text: PSHI

text: metagenomics

characteristic: investigation type

text: Shine

characteristic: isolate

text: Pseudomonas sp. URMO17WK12:I12

text: Pseudomonas sp. URMO17WK12:I12

text: PacBio

characteristic: sequencing method

text: Leaf Microbiome


PYEL

characteristic: ENA-CHECKLIST

text: SIB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PYEL

characteristic: Submitter Id

text: metagenomics

text: Yellow

text: Pseudomonas sp. URMO17WK12:I11

text: Pseudomonas sp. URMO17WK12:I11

text: PacBio

text: Leaf Microbiome


Lactobacillus mucosae

characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

text: Lactobacillus mucosae

text: Lactobacillus mucosae

text: Lactobacillus mucosae

text: Marseille

characteristic: strain

text: Lactobacillus mucosae


Lactobacillus agilis

text: URMITE

text: public

text: Lactobacillus agilis

text: Lactobacillus agilis

characteristic: organism

text: Lactobacillus agilis

text: Marseille

text: Genome sequence of Lactobacillus agilis Marseille


Bacillus testis

characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: Bacillus testis

text: Bacillus sp. SIT10

text: Bacillus sp. SIT10

text: Bacillus testis genome


Gazzoli-CaptureSeq 1

characteristic: External Id

text: LEIDEN UNIVERSITY MEDICAL CENTER

text: public

text: Gazzoli-CaptureSeq 1

tag: Namespace:LEIDEN UNIVERSITY MEDICAL CENTER

characteristic: cell line

text: muscle

characteristic: cell type

text: human

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: Gazzoli-CaptureSeq 1


Gazzoli-CaptureSeq 2

tag: attribute

text: LEIDEN UNIVERSITY MEDICAL CENTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Gazzoli-CaptureSeq 2

text: muscle

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: female

text: Gazzoli-CaptureSeq 2

characteristic: title


Gazzoli-CaptureSeq 3

text: LEIDEN UNIVERSITY MEDICAL CENTER

characteristic: INSDC last update

text: public

text: Gazzoli-CaptureSeq 3

text: muscle

text: human

text: Homo sapiens

text: Homo sapiens

text: female

text: Gazzoli-CaptureSeq 3


Gazzoli-CaptureSeq 4

characteristic: ENA-CHECKLIST

text: LEIDEN UNIVERSITY MEDICAL CENTER

text: public

text: Gazzoli-CaptureSeq 4

text: muscle

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: Gazzoli-CaptureSeq 4


Gazzoli-CaptureSeq 5

text: LEIDEN UNIVERSITY MEDICAL CENTER

text: public

characteristic: INSDC status

text: Gazzoli-CaptureSeq 5

text: muscle

text: human

text: Homo sapiens

text: Homo sapiens

text: female

text: Gazzoli-CaptureSeq 5


Gazzoli-CaptureSeq 6

text: LEIDEN UNIVERSITY MEDICAL CENTER

text: public

characteristic: SRA accession

text: Gazzoli-CaptureSeq 6

text: muscle

text: human

text: Homo sapiens

text: Homo sapiens

text: female

text: Gazzoli-CaptureSeq 6


text: IP

text: public

characteristic: Submitter Id

text: L. pneumophila strain Lorraine (ST47) isolate LG12034018

characteristic: description

text: Legionella pneumophila

text: Legionella pneumophila

text: L. pneumophila strain Lorraine (ST47)


characteristic: ENA-FIRST-PUBLIC

text: TGAC

text: public

text: Japanese Hymenoscyphus mushroom tube 8

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus


text: TGAC

text: public

text: Japanese Hymenoscyphus mushroom tube 9

text: Hymenoscyphus fraxineus

characteristic: organism

text: Hymenoscyphus fraxineus


characteristic: ENA-LAST-UPDATE

text: TGAC

text: public

text: Japanese Hymenoscyphus mushroom tube6

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus


characteristic: External Id

text: TGAC

text: public

text: Japanese Hymenoscyphus mushroom tube 7

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus


text: TGAC

text: public

text: Japanese Hymenoscyphus mushroom tube 4

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus


text: TGAC

text: public

text: Japanese Hymenoscyphus mushroom tube 5

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus


text: TGAC

text: public

text: Japanese Hymenoscyphus mushroom tube 1

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus


text: TGAC

text: public

text: Japanese Hymenoscyphus mushroom tube 2

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus


text: CSISP

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis Ethiopia


text: EMBL

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: (HPV-induced immortalization of keratinocytes


text: IRD

text: public

text: coffee

text: DNA-seq data from accession AR41 of C. arabica

text: Coffea arabica

text: Coffea arabica

text: DNA-seq from AR41


text: IRD

text: public

text: coffee

text: DNA-seq data from accession AR15 of C. arabica

text: Coffea arabica

text: Coffea arabica

text: DNA-seq from AR15


Caturra-DNAseq

text: IRD

text: public

text: Caturra-DNAseq

text: coffee

text: DNA-seq data from accession Caturra of C. arabica

text: Coffea arabica

text: Coffea arabica

text: DNA-seq from Caturra


text: University Jena

text: public

tag: Namespace:University Jena

text: Aubrieta canescens

text: Aubrieta canescens

text: Annual/Perennial Transitions


text: University Jena

text: public

text: Draba hispanica

text: Draba hispanica

text: Annual/Perennial Transitions


text: University Jena

text: public

text: Draba nemorosa

text: Draba nemorosa

text: Annual/Perennial Transitions


text: University Jena

text: public

text: Arabis verna

text: Arabis verna

text: Annual/Perennial Transitions


text: iBiMED - Institute of Biomedicine

text: public

tag: Namespace:iBiMED - Institute of Biomedicine

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: noPF control sample; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: noPF clone 1; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: noPF clone 1; Run number 2


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: noPF clone 1; Run number 3


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: noPF clone 1; Run number 4


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: noPF clone 2; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: noPF clone 3; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: noPF clone 3; Run number 2


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: noPF clone 4; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF control sample; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 1; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 2; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 2; Run number 2


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 3; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 3; Run number 2


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 3; Run number 3


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 3; Run number 4


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 4; Run number 1


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 4; Run number 2


text: iBiMED - Institute of Biomedicine

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c

text: PF clone 4; Run number 3


text: UNIVERSITY HOHENHEIM

text: public

tag: Namespace:UNIVERSITY HOHENHEIM

text: pig gut metagenome

text: pig gut metagenome

text: Sample


SeaUrchin

text: UIT

text: public

text: SeaUrchin

text: Metagenomic sample of Sea urchin gut

text: gut metagenome

text: gut metagenome

text: Sea Urchin gut


text: GIGA-R University of Liege

text: public

tag: Namespace:GIGA-R University of Liege

text: cattle

text: chr24:30000000-45000000 for BosTau6 covering the epidermolysis bullosa casual variant.

text: Bos taurus

text: Bos taurus


Rhizobium sullae1

text: public

text: Rhizobium sullae1

tag: Namespace:IASMA RESEARCH CENTRE - FONDAZIONE EDMUND MACH

text: Rhizobium sullae

text: Rhizobium sullae

text: Draft genome sequence of Rhizobium sullae isolate IS123T


text: CENTRE FOR CANCER BIOLOGY

text: public

tag: Namespace:CENTRE FOR CANCER BIOLOGY

text: Adult human dermal lymphatic microvascular endothelial cells HMVEC-dLyAd (hLEC)

characteristic: cell line

text: Endothelial

text: human

text: Hematology department, Centre For Cancer Biology

characteristic: culture collection

text: LEC1 GATA2 ChIPseq

text: Australia

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

text: Lonza

characteristic: tissue lib

text: LEC1 GATA2 ChIPseq


text: UNIBE-IG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: A nonsense variant in COL6A1 in Landseer dogs with muscular dystrophy


text: URMITE

text: public

text: Bacillus sp. LF1

text: Bacillus sp. LF1

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: UMC Utrecht

characteristic: INSDC last update

text: public

tag: Namespace:UMC Utrecht

characteristic: collection date

text: NLD

text: community isolate (faeces)

characteristic: isolation source

text: Enterococcus faecium

text: Enterococcus faecium


E. coli K12 Ph1b.2

text: WTCHG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E. coli K12 Ph1b.2

characteristic: Submitter Id

text: Escherichia coli str. K-12 substr. MG1655

characteristic: reference URL

characteristic: reference id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MDC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus


E. coli K12 MG1655 Ph1b.1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E. coli K12 MG1655 Ph1b.1

tag: Namespace:WELLCOME TRUST CENTRE FOR HUMAN GENETICS, UNIVERSITY OF OXFORD


text: COLD SPRING HARBOR L

text: public

tag: Namespace:COLD SPRING HARBOR L


text: BETTINA HARR

text: public

tag: Namespace:BETTINA HARR

text: house mouse

text: Germany

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

text: domesticus

characteristic: sub species

text: Domesticus whole genome sequence

characteristic: title


characteristic: ENA-CHECKLIST

text: BETTINA HARR

characteristic: INSDC last update

text: public

text: house mouse

text: France

text: Mus musculus

text: Mus musculus

text: male

text: domesticus

text: Domesticus whole genome sequence


text: BETTINA HARR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Iran

text: Mus musculus

text: Mus musculus

text: male

text: domesticus

text: Domesticus whole genome sequence


E.Coli MARC1b_run1

text: UNIVERSITY OF EAST ANGLIA, UK

text: public

text: E.Coli MARC1b_run1

tag: Namespace:UNIVERSITY OF EAST ANGLIA, UK

characteristic: Submitter Id

characteristic: reference URL


E.Coli MARC1b_run2

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF EAST ANGLIA, UK

text: public

text: E.Coli MARC1b_run2

characteristic: reference id


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vallabhbhai Patel Chest Institute

text: public

tag: Namespace:Vallabhbhai Patel Chest Institute

text: Candida auris

text: Candida auris

text: VPCI 479/P/13


text: public

tag: Namespace:Centre for Ecology, Evolution and Environmental Changes (cE3c)

text: Miguel P Machado

characteristic: collected by

characteristic: collection date

text: Brain from male Squalius pyrenaicus

characteristic: description

text: Adult

characteristic: dev stage

text: Portugal

text: Almargem River in Southern Portugal

characteristic: isolation source

text: 37.1641 N 7.6204 W

characteristic: lat lon

text: Squalius pyrenaicus

characteristic: organism

text: Squalius pyrenaicus

text: Male

text: Brain

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: Centre for Ecology, Evolution and Environmental Changes (cE3c)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Miguel P Machado

text: Brain from female Squalius pyrenaicus

text: Adult

text: Portugal

characteristic: geographic location (country and/or sea)

text: Almargem River in Southern Portugal

text: 37.1641 N 7.6204 W

text: Squalius pyrenaicus

text: Squalius pyrenaicus

text: Female

characteristic: sex

text: Brain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Miguel P Machado

text: Testis from Squalius pyrenaicus

text: Adult

text: Portugal

text: Almargem River in Southern Portugal

text: 37.1641 N 7.6204 W

text: Squalius pyrenaicus

text: Squalius pyrenaicus

text: Male

text: Testis


characteristic: External Id

text: public

text: Miguel P Machado

characteristic: collected by

characteristic: collection date

text: Ovary from Squalius pyrenaicus

characteristic: description

text: Adult

characteristic: dev stage

text: Portugal

text: Almargem River in Southern Portugal

text: 37.1641 N 7.6204 W

text: Squalius pyrenaicus

text: Squalius pyrenaicus

text: Female

text: Ovary


characteristic: ENA-CHECKLIST

text: BETTINA HARR

text: public

text: house mouse

characteristic: common name

text: Helgoland, Germany

text: Mus musculus

characteristic: organism

text: Mus musculus

text: female

text: helgolandicus

characteristic: sub species

text: Helgolandicus whole genome sequence


text: BETTINA HARR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Helgoland, Germany

characteristic: geographic location (country and/or sea)

text: Mus musculus

text: Mus musculus

text: male

text: helgolandicus

text: Helgolandicus whole genome sequence


Spyr

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Spyr

text: Male and female brain and gonad tissues from Squalius pyrenaicus

text: Adult

text: Portugal

text: Almargem River in Southern Portugal

characteristic: isolation source

text: 37.1641 N 7.6204 W

characteristic: lat lon

text: Squalius pyrenaicus

text: Squalius pyrenaicus

text: Male and female

characteristic: sex

text: Male and female brain and gonad tissues

characteristic: tissue type

text: Spyr

characteristic: title


characteristic: External Id

text: UNIVERSITY OF BERN

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF BERN

characteristic: Submitter Id

characteristic: collection date

text: Bern, Switzerland

text: Isolated from cattle

text: Bacillus anthracis

text: Bacillus anthracis

text: Bacillus anthracis Str. JF3852


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERN

text: public

text: Central Switzerland

text: Isolated from cattle

text: Bacillus anthracis

characteristic: organism

text: Bacillus anthracis

text: Bacillus anthracis Str. JF3853


text: UNIVERSITY OF BERN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Bern, Switzerland

text: Isolated from cattle

text: Bacillus anthracis

text: Bacillus anthracis

text: Bacillus anthracis Str. JF3854


text: UNIVERSITY OF BERN

characteristic: INSDC last update

text: public

text: Sankt Gallen, Eastern Switzerland

characteristic: geographic location (country and/or sea)

text: Isolated from cattle

text: Bacillus anthracis

text: Bacillus anthracis

text: Bacillus anthracis Str. JF3887


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF BERN

text: public

text: Appenzell Innerrhoden, Eastern Switzerland

text: Isolated from cattle

text: Bacillus anthracis

text: Bacillus anthracis

text: Bacillus anthracis Str. JF3888


text: Ulrich Lutz

text: public

tag: Namespace:Ulrich Lutz

text: thale cress

characteristic: common name

text: 10 days old seedlings grown on 0.5x MS, 21°C, long day photoperiod.

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col-0 biological replicate 1


text: Ulrich Lutz

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col-0 biological replicate 2


text: Ulrich Lutz

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Kil-0 biological replicate 1


text: Ulrich Lutz

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Kil-0 biological replicate 2


text: Ulrich Lutz

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Kil-0 biological replicate 3


text: Bio21 Institute

text: public

tag: Namespace:Bio21 Institute

text: house mouse

text: Exosomes isolated from OptiPrep

text: Mus musculus

text: Mus musculus


tag: attribute

text: Bio21 Institute

text: public

text: house mouse

text: Exosomes isolated from Ultracentrifugation

text: Mus musculus

text: Mus musculus


text: Bio21 Institute

text: public

text: house mouse

text: GT1-7 neuronal cells

text: Mus musculus

text: Mus musculus


text: Bologna University

text: public

tag: Namespace:Bologna University

text: gut metagenome

text: gut metagenome

text: Porcine gastric microbiota


text: public

tag: Namespace:Division of Biosciences, Brunel University

text: wild type exponential

text: wild type exponential


text: Division of Biosciences, Brunel University

text: public

text: Stationary wild type control

text: wild type stationary


text: public

text: oriC+ oriZ

text: oriZ


text: public

text: oriC+ oriZ rpoB*35

text: oriZ rpo*


text: public

text: oriC+ oriZ tus

text: oriZ tus


text: public

text: doriC oriZ tus

text: doriC oriZ tus


text: public

text: doriC oriZ rpoB*35

text: doriC oriZ rpo*


text: public

text: oriC+ oriZ rpo* tus

text: oriZ rpo* tus


text: public

text: doriC oriZ tus rpoB*35

text: doriC oriZ tus rpo*


text: public

text: doriC oriZ

text: doriC oriZ


text: Vallabhbhai Patel Chest Institute

text: public

text: Candida auris

text: Candida auris

text: Candida auris VPCI 479/P/13


text: UP

text: public

text: Equisetum giganteum

text: Equisetum giganteum

text: strobili

characteristic: tissue type

text: Equisetum giganteum transcriptome


text: CENTRE FOR GENOMIC RESEARCH (CGR)

text: public

tag: Namespace:CENTRE FOR GENOMIC RESEARCH (CGR)

text: S. glossinidius (GMMB4)

text: United Kingdom:Edinburgh

text: Glossina morsitans morsitans

characteristic: host

characteristic: isolate

text: Sodalis glossinidius str. 'morsitans'

text: Sodalis glossinidius str. 'morsitans'

text: Sodalis glossinidius (Glossina morsitans morsitans)

characteristic: title


characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

text: First-phase reactor, day 64, G-period

text: uncultured bacterium

text: uncultured bacterium

text: First-phase reactor_64


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

text: public

characteristic: Submitter Id

text: First-phase reactor, day 84, L-period

text: uncultured bacterium

text: uncultured bacterium

text: First-phase reactor_84


characteristic: INSDC center name

text: public

text: Second-phase reactor, day 64, G-period

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Second-phase reactor_64


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Second-phase reactor, day 84, L-period

text: uncultured bacterium

text: uncultured bacterium

text: Second-phase reactor_84


characteristic: ENA-FIRST-PUBLIC

text: PUBLIC HEALTH ENGLAND

text: public

tag: Namespace:PUBLIC HEALTH ENGLAND

characteristic: broker name

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Centre for Proteomic and Genomic Research

text: Dr A Grobler

characteristic: collected by

characteristic: estimated size

text: draft

characteristic: finishing strategy

text: South Africa

characteristic: geographic location (country and/or sea)

text: Bos taurus

text: nasal mucous membrane

characteristic: host body site

text: bovine

characteristic: host common name

text: healthy

characteristic: host disease status

text: healty

characteristic: host health state

text: Nomakorinte Gcebe

characteristic: identified by

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: number of replicons

text: Mycobacterium sp. GPK 1020

text: Mycobacterium sp. GPK 1020

text: Illumina MiSeq paired-end

characteristic: sequencing method

text: GPK 1020

characteristic: strain

text: Mycobacterium komanii GPK 1020


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DISTAL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: European seabass

characteristic: common name

text: Equimolar pool of 6 seabass coming from Hatchery 01

characteristic: description

text: Dicentrarchus labrax

characteristic: organism

text: Dicentrarchus labrax

text: Seabass genomic pool

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DISTAL

text: public

text: European seabass

text: Equimolar pool of 6 seabass coming from Hatchery 02

text: Dicentrarchus labrax

text: Dicentrarchus labrax

text: Seabass genomic pool


text: UNIVERSITY OF CAMBRIDGE

text: public

tag: Namespace:UNIVERSITY OF CAMBRIDGE

text: RNA was extracted from TuMV infected leaves and treated with RiboZero.

text: Nicotiana Benthamiana

characteristic: lab host

text: Turnip mosaic virus (isolate UK1)

text: Turnip mosaic virus (isolate UK1)

text: Total RNA from TuMV infected N. Benthamiana


text: UNIVERSITY OF CAMBRIDGE

text: public

text: RNA was extracted from purified TuMV virions

text: Nicotiana Benthamiana

text: Turnip mosaic virus (isolate UK1)

text: Turnip mosaic virus (isolate UK1)

text: RNA from TuMV virions


E.Coli MC1061

text: CGR

text: public

text: E.Coli MC1061

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: E.coli


text: SAARLAND UNIVERSITY

text: public

tag: Namespace:SAARLAND UNIVERSITY

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium serotype transcriptome


text: SLU

text: public

text: Verticillium longusporum isolate VL2 (alias 43-3) described in Steventon LA, Fahleson J, Hu Q, Dixelius C 2002. Identification of the causal agent of Verticillium wilt of winter oilseed rape in Sweden as Verticillium longisporum. Mycol Res 106:570-578.

text: Sweden

characteristic: geographic location (country and/or sea)

text: Brassica napus

characteristic: host

text: Verticillium longisporum

text: Verticillium longisporum

text: V. longosporum, isolate VL2


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SLU

text: public

text: Verticillium longisporum, isolate VL1 (alias VD11), described in Steventon LA, Fahleson J, Hu Q, Dixelius C 2002. Identification of the causal agent of Verticillium wilt of winter oilseed rape in Sweden as Verticillium longisporum. Mycol Res 106:570-578.

text: Sweden

text: Brassica napus

text: Verticillium longisporum

text: Verticillium longisporum

text: VL isolate VL1


text: DKFZ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: B-cell

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Thymus

characteristic: tissue type

text: Mouse thymic B-cells


mixed whey

text: THE UNIVERSITY OF QUEENSLAND

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: mixed whey

tag: Namespace:THE UNIVERSITY OF QUEENSLAND

characteristic: Submitter Id

text: October 2013

characteristic: collection date

text: mixed whey originating from Cheddar and Mozzarella production, with and without CO2 treatment

text: Australia

text: milk metagenome

text: milk metagenome

text: mixed whey


Cheddar whey

characteristic: ENA-FIRST-PUBLIC

text: THE UNIVERSITY OF QUEENSLAND

text: public

text: Cheddar whey

text: February 2014

text: Cheddar whey with and without CO2 treatment

characteristic: description

text: Australia

text: milk metagenome

characteristic: organism

text: milk metagenome

text: Cheddar whey

characteristic: title


Mozzarella whey

characteristic: ENA-LAST-UPDATE

text: THE UNIVERSITY OF QUEENSLAND

text: public

text: Mozzarella whey

text: June 2014

text: Mozzarella whey with and without CO2 treatment

text: Australia

characteristic: geographic location (country and/or sea)

text: milk metagenome

text: milk metagenome

text: Mozzarella whey


characteristic: ENA-CHECKLIST

text: CGR

text: public

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: MPIMG

text: public

text: blastocyst

text: house mouse

characteristic: common name

characteristic: dev stage

text: Mus musculus

text: Tet1/3 double knockout

characteristic: project name

text: Mus musculus

text: RNA-seq

characteristic: sequencing method

text: male

characteristic: sex

text: Tet1/3 DKO blastocyst 1


text: MPIMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: blastocyst

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: male

text: Tet1/3 DKO blastocyst 2


characteristic: ENA-FIRST-PUBLIC

text: MPIMG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: blastocyst

text: house mouse

text: Mus musculus

text: Mus musculus

text: male

text: Tet1/3 DKO blastocyst 3


characteristic: ENA-LAST-UPDATE

text: MPIMG

text: public

text: blastocyst

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: female

text: Tet1/3 DKO blastocyst 4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: MPIMG

text: public

text: blastocyst

text: house mouse

text: Mus musculus

text: Mus musculus

text: female

text: Tet1/3 DKO blastocyst 5


text: MPIMG

text: public

text: blastocyst

text: house mouse

characteristic: common name

characteristic: dev stage

text: Mus musculus

text: Mus musculus

text: female

text: CTL blastocyst 1


text: MPIMG

text: public

text: blastocyst

text: house mouse

text: Mus musculus

text: Mus musculus

text: female

text: CTL blastocyst 2


text: MPIMG

text: public

text: blastocyst

text: house mouse

text: Mus musculus

text: Mus musculus

text: female

text: CTL blastocyst 3


Enterococcus massiliensis

text: URMITE

text: public

text: Enterococcus massiliensis

text: Enterococcus sp. AM1

text: Enterococcus sp. AM1

characteristic: strain

text: Enterococcus massiliensis genome


text: MPIMG

text: public

text: blastomere

text: house mouse

text: 8 cell stage

text: Mus musculus

text: Tet1/3 double knockout

characteristic: project name

text: Mus musculus

text: RNA-seq

characteristic: sequencing method

text: single blastomere ctl


text: MPIMG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: blastomere

text: house mouse

text: 8 cell stage

text: Mus musculus

text: Tet1/3 double knockout

text: Mus musculus

text: RNA-seq

text: single blastomere Tet1/3 ko


DKOa

text: MPIMG

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DKOa

text: blastocyst

text: house mouse

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

text: Tet1/3 double knockout


DKOb

characteristic: ENA-FIRST-PUBLIC

text: MPIMG

text: public

characteristic: SRA accession

text: DKOb

text: blastocyst

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: female

text: Tet1/3 double knockout


DKOc

characteristic: ENA-LAST-UPDATE

text: MPIMG

text: public

text: DKOc

characteristic: Submitter Id

text: blastocyst

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: female

text: Tet1/3 double knockout


DKOd

characteristic: ENA-CHECKLIST

characteristic: External Id

text: MPIMG

text: public

text: DKOd

text: blastocyst

text: house mouse

text: Mus musculus

text: Mus musculus

text: female

text: Tet1/3 double knockout

characteristic: title


DKOe

text: MPIMG

text: public

text: DKOe

text: blastocyst

text: house mouse

characteristic: common name

characteristic: dev stage

text: Mus musculus

text: Mus musculus

text: female

text: Tet1/3 double knockout


CTLa

text: MPIMG

text: public

text: CTLa

text: blastocyst

text: house mouse

text: Mus musculus

text: Mus musculus

text: female

text: Tet1/3 double knockout


CTLb

text: MPIMG

text: public

text: CTLb

text: blastocyst

text: house mouse

text: Mus musculus

text: Mus musculus

text: female

text: Tet1/3 double knockout


CTLc

text: MPIMG

text: public

text: CTLc

text: blastocyst

text: house mouse

text: Mus musculus

text: Mus musculus

text: female

text: Wildtype control


text: KI-BN

text: public

text: LoVo

characteristic: cell line

text: human

text: Homo sapiens

text: Homo sapiens


CTCF

text: KI-BN

characteristic: INSDC center name

text: public

text: CTCF

text: LoVo

text: human

text: Homo sapiens

text: Homo sapiens


REST

text: KI-BN

characteristic: INSDC first public

text: public

text: REST

text: LoVo

text: human

text: Homo sapiens

text: Homo sapiens


MYC

text: KI-BN

characteristic: INSDC last update

text: public

text: MYC

text: LoVo

text: human

text: Homo sapiens

text: Homo sapiens


MAX

text: KI-BN

text: public

characteristic: INSDC status

text: MAX

text: LoVo

text: human

text: Homo sapiens

text: Homo sapiens


text: SNU

text: public

text: Healthy

characteristic: description

text: human gut metagenome

text: human gut metagenome

text: MZ


ELMA

characteristic: ENA-FIRST-PUBLIC

text: CNRS

text: public

text: ELMA

text: metagenome

text: metagenome

text: Characterization of biofilm formation in water subjected to low frequency variable 4 electromagnetic fields


text: WAGENINGEN UNIVERSITY

text: public

characteristic: SRA accession

tag: Namespace:WAGENINGEN UNIVERSITY

text: Akkermansia muciniphila grown on BTTM with glucose strand specific RNAseq replicate 1

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia Transcriptome


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with glucose strand specific RNAseq replicate 2

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia Transcriptome


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with glucose strand specific RNAseq replicate 3

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia Transcriptome


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin strand specific RNAseq replicate 1

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia Transcriptome


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin strand specific RNAseq replicate 2

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia Transcriptome


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin strand specific RNAseq replicate 3

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia Transcriptome


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin and glucose strand specific RNAseq replicate 1

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia Transcriptome


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin and glucose strand specific RNAseq replicate 2

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia Transcriptome


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin and glucose strand specific RNAseq replicate 3

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia Transcriptome


text: LOMONOSOV MOSCOW STATE UNIVERSITY

text: public

tag: Namespace:LOMONOSOV MOSCOW STATE UNIVERSITY

text: flax

text: Linum usitatissimum

text: Linum usitatissimum


E-MTAB-3620:LD1 A

text: Institute of Entomology

text: public

text: E-MTAB-3620:LD1 A

tag: Namespace:Institute of Entomology

text: ArrayExpress

characteristic: broker name

text: Protocols: A wild-type (Sapporo) strain of Chymomyza costata (Zetterstedt, 1838) (Diptera: Drosophilidae) originally collected in Sapporo, Hokkaido, Japan, in 1983 was used. Insects were cultured at constant temperature of 18 degree C in incubators MIR154 (Sanyo Electric, Osaka, Japan) on an artificial diet as described by (Kostal et al., 1998). Developmental destiny of larvae was programmed using two different photoperiodic regimes: a long day regime (LD, 16 hour light : 8 h dark ) at which all larvae of both strains continue direct development (i.e. pupariate, pupate and metamorphose to adults), and a short day regime (SD, 12 hour light : 12 hour dark) that induces larval diapause in all individuals of Sapporo strain. In order to switch the developmental destiny from direct development to diapause, the LD-reared wild-type larvae were transferred to SD conditions (T, transfer) on day 3 of their 3rd larval instar (i.e. approximately when 15-day-old since the egg deposition). The transferred larvae experienced 4h advanced light OFF time (dusk) on day 15. All wild-type strain larvae respond to such transfer by switching the developmental destiny from direct development to diapause. All experimental insects came from synchronized eggs (laid within one day) and a second developmental synchronization took place during the 2nd to 3rd instar transition that means three days prior to sampling. All samples were taken on day three of 3rd instar when the larvae reach their maximum sensitivity to photoperiodic signal. The samples were taken at two Zeitgeber times (Zt) in each photoperiodic regime (LD, SD, T). Three biological replicates were taken at each Zt, and each replicate consisted of a pool of 10 larvae. Night samples were taken under dim red light. Larvae were collected to 400ul of ice cold RiboZol RNA Extraction Reagent (Amresco, Solon, OH, USA) in 1.5 ml microvial, immediately cut to small pieces by scissors and stored at -80 degree C until next processing. The total RNA was extracted from whole larvae using the RiboZol RNA Extraction Reagent. Pellet of total RNA was dissolved in 20 ul of DEPC-treated water and an aliquot of 5 ul was taken for total RNA quality assessment on denaturing agarose gel and concentration measurement using Cary50 UV-VIS spectrophotometer (Varian, Palo Alto, CA, USA). The total RNA concentrations were levelled exactly to 0.5 ug/ul and the samples were either sent to the EMBLGenomics Core Facilities (GeneCore, Heidelberg, Germany) for cDNA library production and Illumina RNAseq or used for qRT-PCR validation of RNAseq results The cDNA libraries were prepared from the samples of Sapporo strain larvae using Covaris S2 (Covaris, Woburn,Massachusetts, USA) for fragmentation aiming for an insert size of about 150 nt and TruSeq RNA sample prep kit (Illumina, San Diego, California, USA)

text: L3 larva

characteristic: developmental stage

text: Larvae reared in long day conditions

characteristic: growth condition

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 16 / dark 8

characteristic: stimulus

text: LD1 A

characteristic: zeitgeber time


E-MTAB-3620:T17 A

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Entomology

text: public

text: E-MTAB-3620:T17 A

characteristic: Submitter Id

text: ArrayExpress

text: L3 larva

text: Larvae transferred from long day to short day

text: Chymomyza costata

characteristic: organism

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 16/ dark 8 then light 12/ dark 12

text: T17 A


E-MTAB-3620:T17 B

text: Institute of Entomology

characteristic: INSDC center name

text: public

text: E-MTAB-3620:T17 B

text: ArrayExpress

text: L3 larva

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: T17 B

characteristic: title


E-MTAB-3620:SD13 A

text: Institute of Entomology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3620:SD13 A

text: ArrayExpress

text: L3 larva

text: Larvae reared in short day conditions

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 12 / dark 12

text: SD13 A


E-MTAB-3620:LD17 C

text: Institute of Entomology

text: public

characteristic: INSDC status

text: E-MTAB-3620:LD17 C

text: ArrayExpress

characteristic: description

text: L3 larva

text: Larvae reared in long day conditions

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 16 / dark 8

text: LD17 C


E-MTAB-3620:LD1 B

characteristic: ENA-FIRST-PUBLIC

text: Institute of Entomology

text: public

characteristic: SRA accession

text: E-MTAB-3620:LD1 B

text: ArrayExpress

text: L3 larva

text: Larvae reared in long day conditions

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 16 / dark 8

text: LD1 B


E-MTAB-3620:T13 B

text: Institute of Entomology

text: public

text: E-MTAB-3620:T13 B

text: ArrayExpress

characteristic: broker name

text: L3 larva

characteristic: developmental stage

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: T13 B


E-MTAB-3620:T13 A

text: Institute of Entomology

text: public

text: E-MTAB-3620:T13 A

text: ArrayExpress

text: L3 larva

characteristic: growth condition

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

characteristic: stimulus

text: T13 A


E-MTAB-3620:LD17 B

characteristic: ENA-CHECKLIST

text: Institute of Entomology

text: public

text: E-MTAB-3620:LD17 B

text: ArrayExpress

text: L3 larva

text: Larvae reared in long day conditions

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 16 / dark 8

text: LD17 B

characteristic: zeitgeber time


E-MTAB-3620:SD1 A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Entomology

text: public

text: E-MTAB-3620:SD1 A

text: ArrayExpress

text: L3 larva

text: Larvae reared in short day conditions

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 12 / dark 12

text: SD1 A


E-MTAB-3620:LD1 C

text: Institute of Entomology

text: public

text: E-MTAB-3620:LD1 C

characteristic: Submitter Id

text: ArrayExpress

text: L3 larva

text: Larvae reared in long day conditions

text: Chymomyza costata

characteristic: organism

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 16 / dark 8

text: LD1 C


E-MTAB-3620:T13 C

text: Institute of Entomology

characteristic: INSDC center name

text: public

text: E-MTAB-3620:T13 C

text: ArrayExpress

text: L3 larva

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: T13 C

characteristic: title


E-MTAB-3620:LD17 A

text: Institute of Entomology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3620:LD17 A

text: ArrayExpress

text: L3 larva

text: Larvae reared in long day conditions

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 16 / dark 8

text: LD17 A


E-MTAB-3620:SD1 C

text: Institute of Entomology

text: public

characteristic: INSDC status

text: E-MTAB-3620:SD1 C

text: ArrayExpress

characteristic: description

text: L3 larva

text: Larvae reared in short day conditions

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 12 / dark 12

text: SD1 C


E-MTAB-3620:T17 C

characteristic: ENA-FIRST-PUBLIC

text: Institute of Entomology

text: public

characteristic: SRA accession

text: E-MTAB-3620:T17 C

text: ArrayExpress

text: L3 larva

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: T17 C


E-MTAB-3620:SD13 B

text: Institute of Entomology

text: public

text: E-MTAB-3620:SD13 B

text: ArrayExpress

characteristic: broker name

text: L3 larva

characteristic: developmental stage

text: Larvae reared in short day conditions

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 12 / dark 12

text: SD13 B


E-MTAB-3620:SD13 C

text: Institute of Entomology

text: public

text: E-MTAB-3620:SD13 C

text: ArrayExpress

text: L3 larva

text: Larvae reared in short day conditions

characteristic: growth condition

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 12 / dark 12

characteristic: stimulus

text: SD13 C


E-MTAB-3620:SD1 B

characteristic: ENA-CHECKLIST

text: Institute of Entomology

text: public

text: E-MTAB-3620:SD1 B

text: ArrayExpress

text: L3 larva

text: Larvae reared in short day conditions

text: Chymomyza costata

text: Chymomyza costata

text: Chymomyza costata

text: Photoperiod light 12 / dark 12

text: SD1 B

characteristic: zeitgeber time


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PLYMOUTH UNIVERSITY, UK

text: public

tag: Namespace:PLYMOUTH UNIVERSITY, UK

text: Radix balthica at the stage of first heart function - control conditions

text: Radix balthica

text: Radix balthica

text: RadixbalthicaEmbryoPools


text: PLYMOUTH UNIVERSITY, UK

text: public

characteristic: Submitter Id

text: Radix balthica at the stage of first crawling activity - control conditions

text: Radix balthica

characteristic: organism

text: Radix balthica

text: RadixbalthicaEmbryoPools


text: PLYMOUTH UNIVERSITY, UK

characteristic: INSDC center name

text: public

text: Radix balthica at the stage of first heart function - presence of predator kairomone

text: Radix balthica

text: Radix balthica

text: RadixbalthicaEmbryoPools

characteristic: title


text: PLYMOUTH UNIVERSITY, UK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Radix balthica at the stage of first crawling activity - presence of predator kairomone

text: Radix balthica

text: Radix balthica

text: RadixbalthicaEmbryoPools


text: Centre for Proteomic and Genomic Research

text: public

characteristic: INSDC status

text: Mycobacterium fortuitum

text: Mycobacterium fortuitum

text: ATCC 6841

characteristic: strain

text: Mycobacterium fortuitum ATCC 6841


UPEC AL5051

characteristic: ENA-FIRST-PUBLIC

text: INSTITUT PASTEUR

text: public

characteristic: SRA accession

text: UPEC AL5051

tag: Namespace:INSTITUT PASTEUR

text: Uropathogenic strain of Escherichia coli strain AL505

characteristic: description

text: Escherichia coli

text: Escherichia coli


text: Department of Medical Biology

text: public

tag: Namespace:Department of Medical Biology

text: Suid herpesvirus 1 strain Kaplan

text: Suid herpesvirus 1 strain Kaplan

text: totalRNA of Pseudorabies strain Kaplan-infected PK15 cell line


text: Department of Medical Biology

text: public

text: Suid herpesvirus 1 strain Kaplan

text: Suid herpesvirus 1 strain Kaplan

text: polyA+RNA from Pseudorabies strain Kaplan-infected PK-15 cell line


Proteus vulgaris CSUR P1868

text: URMITE

text: public

text: Proteus vulgaris CSUR P1868

text: Proteus vulgaris

text: Proteus vulgaris

text: CSUR P1868

text: Proteus vulgaris CSUR P1868


Achromobacter genome L1

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L1

tag: Namespace:UNIVERSITY OF LIVERPOOL

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host

characteristic: isolate

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans

text: Genome sequence of Achromobacter isolate


Achromobacter genome L2

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L2

text: United Kingdom

text: Human

text: Achromobacter sp.

text: Achromobacter sp.


Achromobacter genome L3

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L3

characteristic: Submitter Id

text: United Kingdom

text: Human

text: Achromobacter sp.

text: Achromobacter sp.


Achromobacter genome L4

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

text: public

text: Achromobacter genome L4

text: United Kingdom

text: Human

text: Achromobacter sp.

characteristic: organism

text: Achromobacter sp.


Achromobacter genome L5

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC first public

text: public

text: Achromobacter genome L5

text: United Kingdom

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans

characteristic: title


Achromobacter genome L6

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Achromobacter genome L6

text: United Kingdom

text: Human

text: Achromobacter sp.

text: Achromobacter sp.


Achromobacter genome L7

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L7

text: United Kingdom

text: Human

text: Achromobacter sp.

text: Achromobacter sp.


Achromobacter genome L8

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: SRA accession

text: Achromobacter genome L8

text: United Kingdom

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome L9

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L9

text: United Kingdom

text: Human

text: Achromobacter sp.

text: Achromobacter sp.


Achromobacter genome L10

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L10

text: United Kingdom

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome L11

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L11

text: United Kingdom

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome L12

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L12

text: United Kingdom

text: Human

text: Achromobacter sp.

text: Achromobacter sp.


Achromobacter genome L13

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L13

text: United Kingdom

text: Human

text: Achromobacter sp.

text: Achromobacter sp.


Achromobacter genome L14

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L14

text: United Kingdom

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome L15

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L15

text: United Kingdom

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome L16

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L16

text: United Kingdom

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome L17

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome L17

text: United Kingdom

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R1

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R1

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R2

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R2

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R3

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R3

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R4

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R4

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R5

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R5

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R6

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R6

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R7

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R7

text: United Kingdom

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R8

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R8

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R9

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R9

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R10

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R10

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R11

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R11

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R12

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R12

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R13

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R13

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Achromobacter genome R14

text: UNIVERSITY OF LIVERPOOL

text: public

text: Achromobacter genome R14

text: Thailand

text: Human

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


Type strain DSM 2402

text: UNIVERSITY OF LIVERPOOL

text: public

text: Type strain DSM 2402

text: Japan

text: Human

text: DSM 2402

text: Achromobacter xylosoxidans NBRC 15126 = ATCC 27061


Type strain DSM 30026

text: UNIVERSITY OF LIVERPOOL

text: public

text: Type strain DSM 30026

text: DSM 30026

text: Achromobacter denitrificans NBRC 15125

text: Achromobacter denitrificans NBRC 15125


Type strain DSM 653

text: UNIVERSITY OF LIVERPOOL

text: public

text: Type strain DSM 653

text: DSM 653

text: Achromobacter ruhlandii

text: Achromobacter ruhlandii


Type strain DSM 10342

text: UNIVERSITY OF LIVERPOOL

text: public

text: Type strain DSM 10342

text: Achromobacter piechaudii NBRC 102461

text: Achromobacter piechaudii NBRC 102461


Type strain DSM 23806

text: UNIVERSITY OF LIVERPOOL

text: public

text: Type strain DSM 23806

text: DSM 23806

text: Achromobacter spanius

text: Achromobacter spanius


Type strain DSM 23807

text: UNIVERSITY OF LIVERPOOL

text: public

text: Type strain DSM 23807

text: DSM 23807

text: Achromobacter insolitus

text: Achromobacter insolitus


text: public

tag: Namespace:Institute of Health and Biomedical Innovation

text: 434/Bu trimethoprim resistant strain. In house sequencing ID: JML205

characteristic: description

text: Chlamydia trachomatis 434/Bu

text: Chlamydia trachomatis 434/Bu

text: 434/Bu L2 lab strain, spectinomycin and rifampicin resistant


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin and fucose strand specific RNAseq replicate 1

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia transcriptome response


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin and fucose strand specific RNAseq replicate 2

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia transcriptome response


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin and fucose strand specific RNAseq replicate 3

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia transcriptome response


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin and galactose strand specific RNAseq replicate 1

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia transcriptome response


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin and galactose strand specific RNAseq replicate 2

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia transcriptome response


text: WAGENINGEN UNIVERSITY

text: public

text: Akkermansia muciniphila grown on BTTM with mucin and galactose strand specific RNAseq replicate 3

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia transcriptome response


text: BARTS AND THE LONDON

text: public

tag: Namespace:BARTS AND THE LONDON

text: human

characteristic: common name

text: MEMORY ENRICHED

text: Homo sapiens

text: Homo sapiens


text: BARTS AND THE LONDON

text: public

text: human

text: PRE-GERMINAL CENTER

text: Homo sapiens

text: Homo sapiens


text: BARTS AND THE LONDON

text: public

text: human

text: CENTROBLASTS

text: Homo sapiens

text: Homo sapiens


text: BARTS AND THE LONDON

text: public

text: human

text: CENTROCYTES

text: Homo sapiens

text: Homo sapiens


text: BARTS AND THE LONDON

text: public

text: human

text: NOT SORTED

text: Homo sapiens

text: Homo sapiens


text: BARTS AND THE LONDON

text: public

text: human

text: CENTROCYTES CD77NEGATIVE

text: Homo sapiens

text: Homo sapiens


text: IZB

text: public

text: Italy

characteristic: geographic location (country and/or sea)

text: Coast of Livorno

characteristic: isolation source

text: Condylostoma magnum

text: Condylostoma magnum

characteristic: strain

text: sRNA-seq


VMP Abaxial1

characteristic: ENA-CHECKLIST

text: UNIVERSITI MALAYSIA PAHANG

text: public

text: VMP Abaxial1

tag: Namespace:UNIVERSITI MALAYSIA PAHANG

text: Expression analysis of fragrance-related transcripts of abaxial layer of petal and sepal of Vanda Mimi Palmer

text: Vanda hybrid cultivar

text: Vanda hybrid cultivar

text: Abaxial


characteristic: ENA-LAST-UPDATE

text: UNIVERSITI MALAYSIA PAHANG

text: public

text: Expression analysis of fragrance-related transcripts of adaxial layer of petal and sepal of Vanda Mimi Palmer

text: Vanda hybrid cultivar

text: Vanda hybrid cultivar

text: Adaxial layer of Vanda Mimi Palmer


characteristic: External Id

text: Genome Institute of Singapore

text: public

tag: Namespace:Genome Institute of Singapore

text: Escherichia coli UTI89

text: Escherichia coli UTI89


text: INSTITUT PASTEUR DE PARIS

text: public

tag: Namespace:INSTITUT PASTEUR DE PARIS

characteristic: Submitter Id

text: Bordetella pertussis isolates from respiratory samples

characteristic: isolate

text: Bordetella pertussis

text: Bordetella pertussis

text: Bordetella pertussis


text: INSTITUT PASTEUR DE PARIS

characteristic: INSDC center name

text: public

text: Tohama

text: Bordetella pertussis

characteristic: organism

text: Bordetella pertussis

text: Bordetella pertussis


text: UNIVERSITY OF ESSEX

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF ESSEX

text: environmental samples

text: environmental samples

text: Source (sediment A)

characteristic: title


text: UNIVERSITY OF ESSEX

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: environmental samples

text: environmental samples

text: Source (sediment B)


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF ESSEX

text: public

characteristic: SRA accession

text: environmental samples

text: environmental samples

text: Source (soil C)


text: UNIVERSITY OF ESSEX

text: public

text: environmental samples

text: environmental samples

text: Source (soil D)


text: UNIVERSITY OF ESSEX

text: public

text: mixed culture

text: mixed culture

text: Lethal Dalapon (0.65 g/L) Sediment A


text: UNIVERSITY OF ESSEX

text: public

text: mixed culture

text: mixed culture

text: Lethal Dalapon (0.65 g/L) Soil C


text: UNIVERSITY OF ESSEX

text: public

text: mixed culture

text: mixed culture

text: Lethal Dalapon (0.65 g/L) Soil D


text: UNIVERSITY OF ESSEX

text: public

text: mixed culture

text: mixed culture

text: Bening Dalapon (0.05 g/L) Sediment A


text: UNIVERSITY OF ESSEX

text: public

text: mixed culture

text: mixed culture

text: Bening Dalapon (0.05 g/L) Sediment B


text: UNIVERSITY OF ESSEX

text: public

text: mixed culture

text: mixed culture

text: Bening Dalapon (0.05 g/L) Soil C


text: UNIVERSITY OF ESSEX

text: public

text: mixed culture

text: mixed culture

text: Bening Dalapon (0.05 g/L) Soil D


text: CNRS

text: public

text: inoculum B2C2

characteristic: description

text: metagenome

text: metagenome


text: CNRS

text: public

text: inoculum B1C1

text: metagenome

text: metagenome


text: CNRS

text: public

text: B2C2 GAC

text: metagenome

text: metagenome


Dakarella massiliensis

text: URMITE

text: public

text: Dakarella massiliensis

text: Sutterellaceae bacterium ND3

text: Sutterellaceae bacterium ND3

text: Dakarella massiliensis genome


Eubacterium massiliense

text: URMITE

text: public

text: Eubacterium massiliense

text: Eubacterium sp. SB2

text: Eubacterium sp. SB2

text: Eubacterium massiliense genome


text: CENTRE FOR GENOMIC RESEARCH (CGR)

text: public

tag: Namespace:CENTRE FOR GENOMIC RESEARCH (CGR)

text: Campylobacter jejuni

text: Campylobacter jejuni

text: PacBio sequenced Campylobacter jejuni isolates


text: UNIBE-IG

text: public

text: dog

characteristic: common name

text: Canis lupus familiaris

text: Canis lupus familiaris

text: A SINE insertion into the RAB3GAP1 gene in dogs with Warburg micro syndrome 1


text: ULAVAL

text: public

text: Leishmania infantum

text: Leishmania infantum

text: cos-seq


text: UCAMPS

text: public

text: Indonesia

characteristic: geographic location (country and/or sea)

text: Echinochloa glabrescens

text: Echinochloa glabrescens

text: Echinochloa glabrescens waterlogged conditions


text: UCAMPS

text: public

text: rice

text: Indonesia

text: Oryza sativa

text: Oryza sativa

text: Oryza sativa waterlogged conditions


text: Chongqing University

text: public

tag: Namespace:Chongqing University

text: domestic silkworm

text: Bombyx mori

text: Bombyx mori


text: TU MUNICH

text: public

tag: Namespace:TU MUNICH

text: cattle

text: Bos taurus

text: Bos taurus

text: Sample


text: UNIVERSITY OF MANCHESTER

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: baker's yeast

text: Alconorales Natural Park, Andaluzia, Spain

text: Quercus ilex

characteristic: isolation source

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae ZP851

characteristic: strain

text: monosporic-derivative of a natural isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: mix control


characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: Submitter Id

text: baker's yeast

text: Kobilje - Sv. Martin, Slovenia

text: Quercus petraea

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae EXF6684


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: baker's yeast

text: Velike Lasce, Kobila hill, Slovenia

text: Quercus petraea

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae EXF6780


text: GENOMNIA SRL

text: public

tag: Namespace:GENOMNIA SRL

text: house mouse

text: Nucleus Accumbens from Mouse Sample 1 - experiment

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

characteristic: tissue type

text: Accumbens - Stress


text: GENOMNIA SRL

characteristic: INSDC first public

text: public

text: house mouse

text: Nucleus Accumbens from Mouse Sample 2 - experiment

text: Mus musculus

text: Mus musculus

text: brain

text: Accumbens - Stress

characteristic: title


text: GENOMNIA SRL

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Nucleus Accumbens from Mouse Sample 3 - experiment

text: Mus musculus

text: Mus musculus

text: brain

text: Accumbens - stress


characteristic: ENA-FIRST-PUBLIC

text: GENOMNIA SRL

text: public

characteristic: SRA accession

text: house mouse

text: Nucleus Accumbens from Mouse Sample 3 - CTRL

text: Mus musculus

text: Mus musculus

text: brain

text: Accumbens - CTRL


text: GENOMNIA SRL

text: public

text: house mouse

characteristic: common name

text: Nucleus Accumbens from Mouse Sample 5 - CTRL

characteristic: description

text: Mus musculus

text: Mus musculus

text: brain

text: Accumbens - CTRL


text: GENOMNIA SRL

text: public

text: house mouse

text: Nucleus Accumbens from Mouse Sample 6 - CTRL

text: Mus musculus

text: Mus musculus

text: brain

text: Accumbens - CTRL


text: MDC BERLIN

text: public

tag: Namespace:MDC BERLIN

text: fibroblast cells

characteristic: cell type

text: Ribosome footprinting data from F1 hybrid mouse fibroblast cells

text: Mus musculus x Mus spretus

text: Mus musculus x Mus spretus


text: ICDC

text: public

text: CHN

text: Salmonella

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Paratyphi A

type: AMR curated data - CABBAGE

value: spectinomycin

value: EUCAST

value: disk diffusion

value: susceptible

value: Salmonella enterica

value: streptomycin

value: ampicillin

value: chloramphenicol

value: tetracycline

value: trimethoprim

value: azithromycin

value: ciprofloxacin

value: nalidixic acid

value: resistant


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICDC

text: public

text: CHN

text: Salmonella

text: Homo sapiens

text: PA


text: ICDC

characteristic: INSDC center name

text: public

text: CHN

characteristic: Submitter Id

text: Salmonella

text: Homo sapiens

characteristic: organism

text: PA


text: ICDC

characteristic: INSDC first public

text: public

text: CHN

text: Salmonella

text: Homo sapiens

text: PA

characteristic: title


text: ICDC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CHN

text: Salmonella

text: Homo sapiens

text: PA


characteristic: ENA-FIRST-PUBLIC

text: ICDC

text: public

text: CHN

characteristic: SRA accession

text: Salmonella

text: Homo sapiens

text: PA


text: ICDC

text: public

text: PA


text: ICDC

text: public

text: CHN

text: Salmonella

text: Homo sapiens

text: PA


text: ICDC

text: public

text: CHN

text: Salmonella

text: Homo sapiens

text: PA


text: ICDC

text: public

text: CHN

text: Salmonella

text: Homo sapiens

text: PA


text: ICDC

text: public

text: CHN

text: Salmonella

text: Homo sapiens

text: PA


text: ICDC

text: public

text: CHN

text: Salmonella

text: Homo sapiens

text: PA


text: ICDC

text: public

text: CHN

text: Salmonella

text: Homo sapiens

text: PA


text: ICDC

text: public

text: CHN

text: Salmonella

text: Homo sapiens

text: PA


text: SNU

text: public

text: human lung metagenome

text: human lung metagenome


text: SNU

text: public

text: MZ

characteristic: description

text: human lung metagenome

text: human lung metagenome


text: SNU

text: public

text: DZ

text: human lung metagenome

text: human lung metagenome


E-MTAB-3607:GRIP-seq Control

text: Marine Biological Laboratory

text: public

text: E-MTAB-3607:GRIP-seq Control

tag: Namespace:Marine Biological Laboratory

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Protocols: embryos aged for 24 hours after fertilization Nextera

text: fertilization

characteristic: initial time point

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: GRIP-seq Control


E-MTAB-3607:GRIP-seq Experimental 1

text: Marine Biological Laboratory

text: public

text: E-MTAB-3607:GRIP-seq Experimental 1

text: ArrayExpress

text: fertilization

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: GRIP-seq Experimental 1


E-MTAB-3607:GRIP-seq Experimental 2

text: Marine Biological Laboratory

text: public

text: E-MTAB-3607:GRIP-seq Experimental 2

text: ArrayExpress

text: fertilization

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: GRIP-seq Experimental 2


E-MTAB-3594:Sample 1

text: public

text: E-MTAB-3594:Sample 1

tag: Namespace:Institute of Microbiology, Chinese Academy of Sciences

text: ArrayExpress

text: Protocols: Log phase cultures (OD600 of 0.8 - 1.0) of M. smegmatis mc2155 were diluted 1:100 into 7H9 media and cultured for approximately 12 hours until the OD600 reached 0.3. Briefly, total RNA of the treated mycobacteria mc2155 strains was treated using the RibominusTM Transcriptome Isolation Kit to remove rRNA contaminations. NEXTflexTM RNA Fragmentation Buffer was added for separating the mRNA into short fragments. Using these short fragments as templates, random hexamer-primers were used to synthesize the first strand of cDNA. The second strand of cDNA was synthesized using buffer, dNTPs, RNase H and DNA polymerase I. The short fragments were purified with the QIAQuick PCR extraction kit and resolved with EB buffer for end reparation and adding poly(A). The short fragments were subsequently connected with sequencing adaptors.

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Sample 1


E-MTAB-3594:Sample 2

text: Institute of Microbiology, Chinese Academy of Sciences

text: public

text: E-MTAB-3594:Sample 2

text: ArrayExpress

text: Protocols: Log phase cultures (OD600 of 0.8 - 1.0) of M. smegmatis mc2155 were diluted 1:100 into 7H9 media and cultured for approximately 12 hours until the OD600 reached 0.3. Log phase cultures (OD600 of 0.8 - 1.0) of M. smegmatis mc2155 were diluted 1:100 into 7H9 media and cultured for approximately 12 hours until the OD600 reached 0.3. Re-inoculated cells were then treated with the indicated concentrations of H2O2 (0, 0.2 and 7 mM) for periods of 30 min or 3 h, and surviving cells were grown on 7H10 media. Cells were collected after 30 min of 0.2 mM or 7 mM H2O2 treatment, and the corresponding total RNAs were isolated and compared by RNA-sequencing to RNA from untreated cells that were prepared simultaneously. Briefly, total RNA of the treated mycobacteria mc2155 strains was treated using the RibominusTM Transcriptome Isolation Kit to remove rRNA contaminations. NEXTflexTM RNA Fragmentation Buffer was added for separating the mRNA into short fragments. Using these short fragments as templates, random hexamer-primers were used to synthesize the first strand of cDNA. The second strand of cDNA was synthesized using buffer, dNTPs, RNase H and DNA polymerase I. The short fragments were purified with the QIAQuick PCR extraction kit and resolved with EB buffer for end reparation and adding poly(A). The short fragments were subsequently connected with sequencing adaptors.

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: 0.2mM hydrogen peroxide

characteristic: stimulus

text: Sample 2


E-MTAB-3594:Sample 3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3594:Sample 3

text: ArrayExpress

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: 7mM hydrogen peroxide

text: Sample 3


name: cell #1 Study Subject 1 (Exome Sequencing)

characteristic: ENA-LAST-UPDATE

text: KAROLINSKA INSITUTET

text: public

tag: Namespace:KAROLINSKA INSITUTET

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Single Adipocyte


name: cell #2 Study Subject 1 (Exome Sequencing)

characteristic: External Id

text: KAROLINSKA INSITUTET

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Single Adipocyte