characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

text: False

text: TATGTGCCGGCT

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Working

text: gut metagenome

text: GAZ:United Kingdom

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: M

text: True

text: True

text: large

characteristic: histo

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: medium

text: Texas A&M

text: 16S rRNA


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: TGGTCGCATCGT

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Sporting

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:United Kingdom

characteristic: country

characteristic: depth

characteristic: description

text: IBD

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: Fecal samples from dogs of various breeds, places of origin, and severity of bowel disorder were sequencing to obtain a dog gut metagenome.

text: M

text: True

text: True

text: small

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: This analysis was done as in Caporaso et al 2011 Genome research. The PCR primers F515 and R806 were developed against the V4 region of the 16S rRNA, both bacteria and archaea, which we determined would yield optimal community clustering with reads of this length The reverse PCR primer is barcoded with a 12-base error-correcting Golay code to facilitate multiplexing of up to 1,500 samples per lane, and both PCR primers contain sequencer adapter regions.

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT

text: CCME

text: Texas A&M

text: False

text: Illumina

text: hydrolyzed

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: medium

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

text: False

text: CGGATCTAGTGT

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Terrier

text: gut metagenome

text: GAZ:United Kingdom

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: MC

text: True

text: True

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: hydrolyzed

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: medium

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: CGATCTTCGAGC

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Boxer

characteristic: breed

text: Working

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:United Kingdom

characteristic: country

characteristic: depth

characteristic: description

text: IBD

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: M

text: True

text: True

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: hydrolyzed

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: medium

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

text: False

text: GCTCGAAGATTC

characteristic: barcodesequence

characteristic: bcs

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Mixed

text: gut metagenome

text: GAZ:Sweden

text: IBD1_Sweden_HC 1_F3_R.K.1.20.12

text: True

characteristic: dewormed

text: healthy

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: F

text: True

text: True

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

text: indoor

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: FOS 0.4%

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: Texas A&M

text: 16S rRNA

text: False


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: TATCGACACAAG

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Sporting

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

text: IBD1_Sweden_HC 11_F10_R.K.1.20.12

characteristic: description

text: True

text: healthy

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: F

text: True

text: True

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: indoor

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: large

text: Texas A&M

text: 16S rRNA

text: False


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

text: False

text: GATTCCGGCTCA

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Working

text: gut metagenome

text: GAZ:Sweden

text: IBD1_Sweden_HC 12_F11_R.K.1.20.12

text: True

characteristic: dewormed

text: healthy

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: F

text: True

text: True

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

text: indoor

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: large

text: Texas A&M

text: 16S rRNA

text: False


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: CGTAATTGCCGC

characteristic: bcs

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Mixed

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

text: IBD1_Sweden_HC 13_F12_R.K.1.20.12

characteristic: description

text: False

text: healthy

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: MC

text: True

text: True

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: indoor

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: Texas A&M

text: 16S rRNA

text: True


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

text: ATGGGTTCCGTC

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Mixed

text: gut metagenome

text: GAZ:Sweden

text: IBD1_Sweden_HC 16_G2_R.K.1.20.12

text: True

characteristic: dewormed

text: healthy

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: F

text: True

text: True

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

text: indoor

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: Texas A&M

text: 16S rRNA

text: False


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: antibiotics

text: False

text: TAGGCATGCTTG

characteristic: bcs

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Beagle

characteristic: breed

text: Hound

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

text: IBD1_Sweden_HC 17_G3_R.K.1.20.12

characteristic: description

text: True

text: healthy

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: MC

text: True

text: True

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: indoor

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: medium

text: Texas A&M

text: 16S rRNA

text: False


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

text: AACTAGTTCAGG

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Sporting

text: gut metagenome

text: GAZ:Sweden

text: IBD1_Sweden_HC 18_G4_R.K.1.20.12

text: True

characteristic: dewormed

text: healthy

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: FS

text: True

text: True

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

text: indoor

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: large

text: Texas A&M

text: 16S rRNA

text: True


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: antibiotics

text: False

text: ATTCTGCCGAAG

characteristic: bcs

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Sporting

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

text: IBD1_Sweden_HC 19_G5_R.K.1.20.12

characteristic: description

text: True

text: healthy

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: F

text: True

text: True

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: indoor

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: large

text: Texas A&M

text: 16S rRNA

text: True


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: anonymized name

text: False

text: AGGCTTACGTGT

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Sporting

text: gut metagenome

text: GAZ:Sweden

text: IBD1_Sweden_HC 2_F4_R.K.1.20.12

text: True

characteristic: dewormed

text: healthy

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: F

text: True

text: True

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

text: both

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: large

text: Texas A&M

text: 16S rRNA

text: True


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: AGCATGTCCCGT

characteristic: bcs

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Mixed

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

text: IBD1_Sweden_HC 21_G6_R.K.1.20.12

characteristic: description

text: True

text: healthy

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: F

text: True

text: True

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: indoor

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: Texas A&M

text: 16S rRNA

text: False


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

text: False

text: GTACGATATGAC

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Mixed

text: gut metagenome

text: GAZ:Sweden

text: IBD1_Sweden_HC 23_G7_R.K.1.20.12

text: False

characteristic: dewormed

text: healthy

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: MC

text: True

text: True

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

text: indoor

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: Texas A&M

text: 16S rRNA

text: True


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: TCTCTACCACTC

characteristic: bcs

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Hovawart

characteristic: breed

text: Working

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

text: IBD1_Sweden_HC 3_F5_R.K.1.20.12

characteristic: description

text: True

text: healthy

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: MC

text: True

text: True

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: large

text: Texas A&M

text: 16S rRNA

text: True


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

text: False

text: ACTTCCAACTTC

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Toy/Companion

text: gut metagenome

text: GAZ:Sweden

text: IBD1_Sweden_HC 4_F6_R.K.1.20.12

text: True

characteristic: dewormed

text: healthy

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: F

text: True

text: True

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: small

text: Texas A&M

text: 16S rRNA

text: False


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: CTCACCTAGGAA

characteristic: bcs

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Hound

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

text: IBD1_Sweden_HC 6_F7_R.K.1.20.12

characteristic: description

text: False

text: healthy

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: M

text: True

text: True

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: indoor

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: large

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

text: False

text: GTGTTGTCGTGC

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Mixed

text: gut metagenome

text: GAZ:Sweden

text: IBD1_Sweden_HC 7_F8_R.K.1.20.12

text: True

characteristic: dewormed

text: healthy

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: MC

text: True

text: True

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

text: indoor

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: Texas A&M

text: 16S rRNA

text: False


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: CCACAGATCGAT

characteristic: bcs

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Toy/Companion

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

text: IBD1_Sweden_HC 9_F9_R.K.1.20.12

characteristic: description

text: False

text: healthy

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: F

text: True

text: True

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: indoor

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: lamb

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: small

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

text: False

text: GTGGTGGTTTCC

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Sporting

text: gut metagenome

text: GAZ:Sweden

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: True

text: True

text: small

characteristic: histo

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: lamb

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: medium

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: anonymized name

characteristic: antibiotics

text: False

text: TAGTATGCGCAA

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Terrier

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

characteristic: description

text: IBD

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: M

text: True

text: True

text: large

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

characteristic: platformchemistry

characteristic: pool name

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: small

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: TGCGCTGAATGT

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Toy/Companion

text: gut metagenome

text: GAZ:Sweden

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: F

text: True

text: True

text: large

characteristic: histo

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: small

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

text: ATGGCTGTCAGT

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Bullmastiff

characteristic: breed

text: Working

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

characteristic: description

text: IBD

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: F

text: True

text: True

text: both

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: fish

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: large

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: antibiotics

text: False

text: GTTCTCTTCTCG

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Drever

text: Hound

text: gut metagenome

text: GAZ:Sweden

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: True

text: True

text: small

characteristic: histo

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

characteristic: platformchemistry

characteristic: pool name

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: medium

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: ATGTCACCGCTG

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Sporting

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

characteristic: description

text: IBD

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: M

text: True

text: True

text: large

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: fish

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: large

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

text: TGTAACGCCGAT

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Mixed

text: gut metagenome

text: GAZ:Sweden

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: M

text: True

text: True

text: large

characteristic: histo

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: fish

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: antibiotics

text: False

text: AGCAGAACATCT

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Vizsla

characteristic: breed

text: Sporting

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

characteristic: description

text: IBD

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: M

text: True

text: True

text: large

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: fish

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: medium

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

text: CGTAAGATGCCT

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Working

text: gut metagenome

text: GAZ:Sweden

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: M

text: True

text: True

text: both

characteristic: histo

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: FOS 0.4%

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: small

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: antibiotics

text: False

text: GCGTTCTAGCTG

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Boxer

characteristic: breed

text: Working

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

characteristic: description

text: IBD

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: M

text: True

text: True

text: large

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

characteristic: platformchemistry

characteristic: pool name

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: medium

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: GTTGTTCTGGGA

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Papillon

text: Toy/Companion

text: gut metagenome

text: GAZ:Sweden

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: MC

text: True

text: True

text: both

characteristic: histo

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: small

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

text: GGACTTCCAGCT

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Toy/Companion

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

characteristic: description

text: IBD

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: M

text: True

text: True

text: large

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: small

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: antibiotics

text: False

text: CTCACAACCGTG

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Rottweiler

text: Working

text: gut metagenome

text: GAZ:Sweden

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: FS

text: True

text: True

text: both

characteristic: histo

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: chicken

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: large

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

text: CTGCTATTCCTC

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: breed

text: Working

characteristic: collection date

text: gut metagenome

characteristic: common name

text: GAZ:Sweden

characteristic: country

characteristic: depth

characteristic: description

text: IBD

text: True

characteristic: elevation

characteristic: emp status

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

text: Texas A&M

text: M

text: True

text: True

text: both

text: domestic dog

text: Canis lupus familiaris

text: HiSeq

text: GT

text: GTGCCAGCMGCCGCGGTAA

text: gut metagenome

characteristic: organism

text: CCME

text: Texas A&M

text: False

text: Illumina

characteristic: platform

characteristic: platformchemistry

characteristic: pool name

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: male

text: large

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: age group

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

characteristic: antibiotics

text: False

text: TGGAGTAGGTGG

characteristic: barcodesequence

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Weimaraner

text: Sporting

text: gut metagenome

text: GAZ:Sweden

text: IBD

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

characteristic: env matter

characteristic: experiment title

text: Texas A&M

text: F

text: True

text: True

text: both

characteristic: histo

text: domestic dog

characteristic: host common name

text: Canis lupus familiaris

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: HiSeq

characteristic: latitude

characteristic: library construction protocol

text: GT

characteristic: linker

text: GTGCCAGCMGCCGCGGTAA

characteristic: linkerprimersequence

characteristic: longitude

text: gut metagenome

characteristic: pcr primers

text: CCME

text: Texas A&M

text: False

text: Illumina

text: hydrolyzed

text: False

text: completed

text: CCME

text: 0.1, gram

text: Texas A&M

text: gut metagenome

text: sequencing by synthesis

text: female

text: large

text: Texas A&M

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 9/4/14 10:00

characteristic: depth

text: sandy loam soil from an organic agriculture field

characteristic: description

text: True

text: soil metagenome

characteristic: organism

text: USDA-ARS CPGRU

text: True

text: soil

characteristic: sample type

text: soil metagenome

characteristic: timepoint

characteristic: title

text: pre-treatment

characteristic: treatment

characteristic: trial

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 10/22/14 10:00

text: True

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: USDA-ARS CPGRU

text: True

text: soil

text: soil metagenome

text: ASD


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 10/22/14 10:00

text: True

text: soil metagenome

text: USDA-ARS CPGRU

text: True

text: soil

text: soil metagenome

text: no-treatment control


testes

text: UNIVERSITY OF NEW HAMPSHIRE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: testes

tag: Namespace:UNIVERSITY OF NEW HAMPSHIRE

characteristic: Submitter Id

text: cactus mouse

characteristic: common name

text: Peromyscus eremicus

text: Peromyscus eremicus

text: Rodents of the genus Peromyscus have become increasingly utilized models for investigations into adaptive biology. This genus is particularly powerful for research linking genetics with adaptive physiology and behaviors, and recent research has capitalized on the unique opportunities afforded by the ecological diversity of these rodents. However, well characterized genomic and transcriptomic data is intrinsic to explorations of the genetic architecture responsible for ecological adaptations. This study characterizes a reproductive transcriptome of male Peromyscus eremicus (Cactus mouse), a desert specialist with extreme physiological adaptations to water limitation. We describe a reproductive transcriptome comprising three tissues in order to expand upon existing research in this species and to facilitate further studies elucidating the genetic basis of potential desert adaptations in male reproductive physiology.


Epididymis

text: UNIVERSITY OF NEW HAMPSHIRE

text: public

text: Epididymis

text: cactus mouse

text: Peromyscus eremicus

characteristic: organism

text: Peromyscus eremicus

characteristic: title


Vas Deferens

text: UNIVERSITY OF NEW HAMPSHIRE

text: public

text: Vas Deferens

text: cactus mouse

text: Peromyscus eremicus

text: Peromyscus eremicus


text: UCSDMI

text: public

text: 9/10/13 10:00

characteristic: depth

characteristic: description

text: True

text: soil metagenome

text: USDA-ARS CPGRU

text: True

text: soil

characteristic: sample type

text: soil metagenome

characteristic: timepoint

text: pre-treatment

characteristic: treatment

characteristic: trial


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: 10/30/13 10:00

text: True

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: USDA-ARS CPGRU

text: True

text: soil

text: soil metagenome

text: ASD


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 10/30/13 10:00

text: True

text: soil metagenome

text: USDA-ARS CPGRU

text: True

text: soil

text: soil metagenome

text: no-treatment control


text: UCSDMI

text: public

characteristic: Submitter Id

text: 3/5/14 10:00

characteristic: depth

characteristic: description

text: True

text: soil metagenome

characteristic: organism

text: USDA-ARS CPGRU

text: True

text: soil

text: soil metagenome

characteristic: title

text: no-treatment control


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 3/5/14 10:00

text: True

text: soil metagenome

text: USDA-ARS CPGRU

text: True

text: soil

characteristic: sample type

text: soil metagenome

characteristic: timepoint

text: ASD

characteristic: treatment

characteristic: trial


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: 2/24/15 10:00

text: True

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: USDA-ARS CPGRU

text: True

text: soil

text: soil metagenome

text: no-treatment control


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/24/15 10:00

text: True

text: soil metagenome

text: USDA-ARS CPGRU

text: True

text: soil

text: soil metagenome

text: ASD


Burkholderia multivorans VC5602

text: Instituto Superior Tecnico

text: public

characteristic: SRA accession

text: Burkholderia multivorans VC5602

tag: Namespace:Instituto Superior Tecnico

characteristic: Submitter Id

characteristic: collection date

text: Canada

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: human

characteristic: host scientific name

characteristic: isolate

text: Clinical isolate

characteristic: isolation source

text: Burkholderia multivorans

characteristic: organism

text: Burkholderia multivorans

text: Burkholderia multivorans isolates from cystic fibrosis patients


Burkholderia multivorans VC7102

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC7102

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans

characteristic: title


Burkholderia multivorans VC7731

characteristic: External Id

text: Instituto Superior Tecnico

characteristic: INSDC center name

text: public

text: Burkholderia multivorans VC7731

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC7732

text: Instituto Superior Tecnico

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Burkholderia multivorans VC7732

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC8270

text: Instituto Superior Tecnico

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Burkholderia multivorans VC8270

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC8999

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC8999

characteristic: Submitter Id

characteristic: collection date

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC10371

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC10371

text: Canada

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC11265

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC11265

text: Canada

text: diseased

text: human

characteristic: host scientific name

characteristic: isolate

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC13059

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC13059

text: Canada

text: diseased

text: human

text: Clinical isolate

characteristic: isolation source

text: Burkholderia multivorans

characteristic: organism

text: Burkholderia multivorans


Burkholderia multivorans VC13400

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC13400

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC13401

characteristic: ENA-LAST-UPDATE

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC13401

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans

characteristic: title


Burkholderia multivorans VC13534

characteristic: External Id

text: Instituto Superior Tecnico

characteristic: INSDC center name

text: public

text: Burkholderia multivorans VC13534

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC14024

text: Instituto Superior Tecnico

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Burkholderia multivorans VC14024

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC14765

text: Instituto Superior Tecnico

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Burkholderia multivorans VC14765

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC15201

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC15201

characteristic: Submitter Id

characteristic: collection date

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC15656

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC15656

text: Canada

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC15765

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC15765

text: Canada

text: diseased

text: human

characteristic: host scientific name

characteristic: isolate

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC15766

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC15766

text: Canada

text: diseased

text: human

text: Clinical isolate

characteristic: isolation source

text: Burkholderia multivorans

characteristic: organism

text: Burkholderia multivorans


Burkholderia multivorans VC16144

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC16144

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC16557

characteristic: ENA-LAST-UPDATE

text: Instituto Superior Tecnico

text: public

text: Burkholderia multivorans VC16557

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans

characteristic: title


Burkholderia multivorans VC16559

characteristic: External Id

text: Instituto Superior Tecnico

characteristic: INSDC center name

text: public

text: Burkholderia multivorans VC16559

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


Burkholderia multivorans VC16929

text: Instituto Superior Tecnico

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Burkholderia multivorans VC16929

text: Canada

text: diseased

text: human

text: Clinical isolate

text: Burkholderia multivorans

text: Burkholderia multivorans


text: Handong Global University

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Handong Global University

text: draft genome of Lactobacillus plantarum BFE 5092

characteristic: description

text: Lactobacillus plantarum

text: Lactobacillus plantarum

text: Lactobacillus plantarum BFE 5092


text: Department of Plant Sciences, Oxford

text: public

tag: Namespace:Department of Plant Sciences, Oxford

characteristic: Submitter Id

characteristic: collection date

unit: m

characteristic: depth

text: temperate grassland

characteristic: environment (biome)

text: meadow

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Oxford grass

characteristic: project name

text: soil metagenome

text: Miseq 300pe

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Oxford grass


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Plant Sciences, Oxford

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: temperate grassland

text: meadow/pasture

text: soil

text: United Kingdom

text: metagenome

text: soil metagenome

characteristic: organism

text: Oxford grass

text: soil metagenome

text: soil

text: Oxford grass

characteristic: title


text: UBO

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Cadophora malorum

text: Cadophora malorum

text: UBOCC 108058


text: public

tag: Namespace:DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki

text: ArrayExpress

characteristic: broker name

text: Protocols: Stems of two individuals (trees 15 and 16) was cut into 50-100um thick (free hand)cross sections randomly selected stem discs are set to two pools: cytokinin treatment and control treatment. Samples are collected noon time (11:00-11:30). Cytokinin treatment: stem discs (several hundred) are submerged with 100nM 2ip, 20nM NaPi buffer, with modest shaking for 60 min +/- 2 min (time to collect about 30mg stem discs (several dozens) for RNA sample. Control treatment: identical to cytokinin treatment, only without 100nM 2ip. Library was constructed at the SciLifeLab

characteristic: description

characteristic: genotype

text: tree 15

characteristic: individual

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki

text: public

text: ArrayExpress

text: tree 15

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: public

text: ArrayExpress

text: tree 16

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


E-MTAB-4579:Gp 1  WT GL 9/16

text: public

text: E-MTAB-4579:Gp 1 WT GL 9/16

tag: Namespace:Center Genome Enabled Biology Medicine, University of Aberdeen

text: ArrayExpress

text: Protocols: Cells were incubated overnight in 5 ml volumes in the indicated conditions and transferred to fresh medium in 50 mL culture flasks for 4 hours (30C, 200 rpm) to an OD600 = 0.6. RNA was obtained via Qiazol/chloroform extraction (QIAgen) according to the manufacture’s instructions and assessed for quality by nanodrop. RNA was DNAse treated (TURBO DNAse, Ambion) according to the manufacturer’s instructions and assessed for quality by Agilent Bioanalyser (RIN>8). Ion Total RNAseq v2

text: YNB Glucose Lactate

characteristic: growth condition

text: Candida albicans

text: Candida albicans

text: Candida albicans

characteristic: strain

text: Gp 1 WT GL 9/16


E-MTAB-4579:Gp 1 Crz1 G 1 10/14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Center Genome Enabled Biology Medicine, University of Aberdeen

text: public

text: E-MTAB-4579:Gp 1 Crz1 G 1 10/14

text: ArrayExpress

text: crz1::hisG/crz1::hisG::URA3::hisG in CAF2-1

text: YNB Glucose

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 1 Crz1 G 1 10/14


E-MTAB-4579:Gp 1 Crz1 GL 2 10/14

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4579:Gp 1 Crz1 GL 2 10/14

text: ArrayExpress

text: YNB Glucose Lactate

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 1 Crz1 GL 2 10/14


E-MTAB-4579:Gp 1 WT G 9/16

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4579:Gp 1 WT G 9/16

text: ArrayExpress

text: YNB Glucose

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 1 WT G 9/16


E-MTAB-4579:Gp 1 WT L2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4579:Gp 1 WT L2

text: ArrayExpress

text: YNB Lactate

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 1 WT L2


E-MTAB-4579:Gp 2 Crz1 G 2 10/14

text: public

text: E-MTAB-4579:Gp 2 Crz1 G 2 10/14

text: ArrayExpress

text: YNB Glucose

text: Candida albicans

characteristic: organism

text: Candida albicans

text: Candida albicans

text: Gp 2 Crz1 G 2 10/14

characteristic: title


E-MTAB-4579:Gp 2 Crz1 GL1 10/14

text: public

characteristic: SRA accession

text: E-MTAB-4579:Gp 2 Crz1 GL1 10/14

characteristic: Submitter Id

text: ArrayExpress

text: YNB Glucose Lactate

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 2 Crz1 GL1 10/14


E-MTAB-4579:Gp 2 WT G 9/17

text: public

text: E-MTAB-4579:Gp 2 WT G 9/17

text: ArrayExpress

characteristic: broker name

characteristic: description

text: YNB Glucose

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 2 WT G 9/17


E-MTAB-4579:Gp 2 WT GL 9/12

text: public

text: E-MTAB-4579:Gp 2 WT GL 9/12

text: ArrayExpress

characteristic: genotype

text: YNB Glucose Lactate

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 2 WT GL 9/12


E-MTAB-4579:Gp 2 WT L1

text: public

text: E-MTAB-4579:Gp 2 WT L1

text: ArrayExpress

text: YNB Lactate

characteristic: growth condition

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 2 WT L1


E-MTAB-4579:Gp 3 Crz1 G 3 10/14

text: public

text: E-MTAB-4579:Gp 3 Crz1 G 3 10/14

text: ArrayExpress

text: YNB Glucose

text: Candida albicans

text: Candida albicans

text: Candida albicans

characteristic: strain

text: Gp 3 Crz1 G 3 10/14


E-MTAB-4579:Gp 3 Crz1 GL 3 10/14

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4579:Gp 3 Crz1 GL 3 10/14

text: ArrayExpress

text: YNB Glucose Lactate

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 3 Crz1 GL 3 10/14


E-MTAB-4579:Gp 3 WT G 9/29

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4579:Gp 3 WT G 9/29

text: ArrayExpress

text: YNB Glucose

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 3 WT G 9/29


E-MTAB-4579:Gp 3 WT GL 9/17

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4579:Gp 3 WT GL 9/17

text: ArrayExpress

text: YNB Glucose Lactate

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 3 WT GL 9/17


E-MTAB-4579:Gp 3 WT L 3

characteristic: External Id

text: public

text: E-MTAB-4579:Gp 3 WT L 3

text: ArrayExpress

text: YNB Lactate

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Gp 3 WT L 3


text: JAMES COOK UNIVERSIT

characteristic: INSDC center name

text: public

tag: Namespace:JAMES COOK UNIVERSIT

characteristic: collection date

characteristic: depth

text: Lnadfill

characteristic: environment (biome)

text: land

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Methane remediation project

characteristic: project name

text: soil metagenome

text: Pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: CSTR


text: male

characteristic: ArrayExpress-Sex

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: 10x library

characteristic: sample description

text: Homo sapiens

characteristic: title


text: female

text: Homo sapiens

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

text: 10x library

text: Homo sapiens


text: Larval:Days 7-13 - ZFS:0000039

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (ATCACGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (CGATGTTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TTAGGCAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TGACCACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (ACAGTGGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: title


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GCCAATGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (CAGATCTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (ACTTGATG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GATCAGCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TAGCTTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GGCTACAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (CTTGTACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed

characteristic: title


text: Larval:Days 7-13 - ZFS:0000039

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TGGTTGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TCTCGGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TAAGCGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TCCGTCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TGTACCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TTCTGTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TCTGCTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed

characteristic: title


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TTGGAGGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TCGAGCGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TGATACGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TGCATAGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: Larval:Days 7-13 - ZFS:0000039

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 255 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TTGACTCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph255.

text: Danio rerio

text: mixed


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

tag: Namespace:INSTITUTE OF EVOLUTIONARY BIOLOGY

text: Replicate 1

characteristic: description

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 4

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads

characteristic: title


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 8

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 148

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 182

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 224

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 234

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 252

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 270C

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 281

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 211

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Replicate 127

text: Biorhiza pallida

text: Biorhiza pallida

text: Replicate raw reads