name: E-MTAB-4564:PC RBP10-Myc +tet free mono B

text: DKFZ-ZMBH Alliance

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Procyclic form

text: free and monosomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc +tet free mono B


E-MTAB-4564:PC RBP10-Myc +tet input A

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DKFZ-ZMBH Alliance

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4564:PC RBP10-Myc +tet input A

tag: Namespace:DKFZ-ZMBH Alliance

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Various see sample notes rRNA depletion standard Illumina

characteristic: description

text: Procyclic form

characteristic: developmental stage

text: Input

characteristic: fraction

characteristic: genetic modification

text: Trypanosoma brucei

characteristic: organism

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc +tet input A

characteristic: title

type: has member


E-MTAB-4564:PC RBP10-Myc +tet input B

text: DKFZ-ZMBH Alliance

characteristic: INSDC last update

text: public

text: E-MTAB-4564:PC RBP10-Myc +tet input B

text: ArrayExpress

text: Procyclic form

text: Input

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc +tet input B


E-MTAB-4564:PC RBP10-Myc +tet poly A

characteristic: ENA-CHECKLIST

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4564:PC RBP10-Myc +tet poly A

text: ArrayExpress

text: Procyclic form

text: polysomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc +tet poly A


E-MTAB-4564:PC RBP10-Myc +tet poly B

characteristic: ENA-FIRST-PUBLIC

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4564:PC RBP10-Myc +tet poly B

text: ArrayExpress

text: Procyclic form

text: polysomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc +tet poly B


name: E-MTAB-4564:PC RBP10-Myc -tet free mono A

characteristic: ENA-LAST-UPDATE

text: DKFZ-ZMBH Alliance

text: public

text: ArrayExpress

text: Procyclic form

text: free and monosomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc -tet free mono A


name: E-MTAB-4564:PC RBP10-Myc -tet free mono B

characteristic: External Id

text: DKFZ-ZMBH Alliance

text: public

text: ArrayExpress

text: Procyclic form

text: free and monosomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc -tet free mono B


E-MTAB-4564:PC RBP10-Myc -tet input A

text: DKFZ-ZMBH Alliance

characteristic: INSDC center name

text: public

text: E-MTAB-4564:PC RBP10-Myc -tet input A

text: ArrayExpress

text: Procyclic form

text: Input

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc -tet input A


E-MTAB-4564:PC RBP10-Myc -tet input B

text: DKFZ-ZMBH Alliance

characteristic: INSDC first public

text: public

text: E-MTAB-4564:PC RBP10-Myc -tet input B

text: ArrayExpress

text: Procyclic form

text: Input

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc -tet input B


E-MTAB-4564:PC RBP10-Myc -tet poly A

text: DKFZ-ZMBH Alliance

text: public

characteristic: INSDC status

text: E-MTAB-4564:PC RBP10-Myc -tet poly A

text: ArrayExpress

text: Procyclic form

text: polysomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc -tet poly A


E-MTAB-4564:PC RBP10-Myc -tet poly B

text: DKFZ-ZMBH Alliance

text: public

characteristic: SRA accession

text: E-MTAB-4564:PC RBP10-Myc -tet poly B

text: ArrayExpress

text: Procyclic form

text: polysomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: PC RBP10-Myc -tet poly B


text: University of Cambridge

text: public

tag: Namespace:University of Cambridge

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: ES cells were cultured on 0.1% gelatin-coated plates in 2i/LIF conditions. Cells were fixed using 1% formaldehyde for 10 min at room temperature and fixation quenched with 150 mM glycine. Chromatin was sheared to an average fragment size between 200 and 300 bp using a Bioruptor sonication instrument (Diagenode). Immunoprecipitation was performed using antibodies against endogenous proteins or the FLAG tag. Libraries were prepared with the NEXTflex Rapid Illumina DNA-seq Library Prep Kit (Bioo Scientific).

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: University of Cambridge

text: public

text: ArrayExpress

characteristic: broker name

text: Sall4 KO

text: embryonic stem cell

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: University of Cambridge

text: public

text: ArrayExpress

text: wild type genotype

text: embryonic stem cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

text: University of Cambridge

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Sall4/1 DKO

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Cambridge

text: public

text: E-MTAB-4565:Sall4_FLAG_Mbd3null_2i_input

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Research Center for Eco-Environmental Sciences

characteristic: collection date

unit: m

characteristic: depth

text: grassland

characteristic: environment (biome)

text: Alpine

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Bacteria aborigena

characteristic: project name

text: Bacteria aborigena

text: pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Research Center for Eco-Environmental Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: grass

text: Alpine

text: soil

text: China

text: metagenome

text: unidentified archaeon

characteristic: organism

text: Archaea

text: unidentified archaeon

text: pyrosequencing

text: soil

text: Arc

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: depth

text: grassland

characteristic: environment (biome)

text: high elevation

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: metagenome

text: unidentified archaeon

text: unidentified archaeon

text: pyrosequencing

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC

text: public

text: Clostridium phytofermentans

characteristic: common name

text: Lachnoclostridium phytofermentans

text: Lachnoclostridium phytofermentans


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Iowa State University Department of Animal Science

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: Protocols: At 17 days of age, birds were transferred to temperature-controlled chambers and acclimated to the new environment for five days. From days 22 to 28 of age, the heat stress group (n=24) were exposed to high heat 35°C for 7 h per day and remained at 25°C at all other times. There was also a contemporary control group (n=24) that was maintained at normal temperature of 25°C. The liver samples were collected at 3 h after heat treatment. The acute heat treatment group (n=12) were collected on 1d, and the chronic heat treatment group (n=12) were collected on 7d after 7 days of cyclic heat. All animal care and experimental procedures were reviewed and approved by the Animal Care and Use Committee (#11-07-6460-G) of Iowa State University. illumina TruSeq RNA Sample Preparation v2 Kit (Illumina, San Diego, CA, USA)

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: liver

characteristic: organism part

text: Gallus gallus

text: Male

characteristic: sex

text: Acute Control

characteristic: stimulus

text: AIL line

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University Department of Animal Science

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: liver

text: Gallus gallus

text: Male

text: Acute Control

text: AIL line

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: chicken

characteristic: common name

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: Male

text: Acute Heat Stress

text: AIL line


text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: Male

text: Chronic Control

text: AIL line


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: liver

characteristic: organism part

text: Gallus gallus

text: Male

characteristic: sex

text: Chronic Heat Stress

characteristic: stimulus

text: AIL line

characteristic: strain


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: liver

text: Gallus gallus

text: Male

text: Acute Control

text: Broiler line


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: Male

text: Acute Heat Stress

text: Broiler line

characteristic: title


text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: Male

text: Chronic Control

text: Broiler line


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: chicken

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: liver

characteristic: organism part

text: Gallus gallus

text: Male

characteristic: sex

text: Chronic Heat Stress

characteristic: stimulus

text: Broiler line


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: Male

text: Acute Control

text: Fayoumi line

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: liver

text: Gallus gallus

text: Male

text: Acute Heat Stress

text: Fayoumi line


text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: Male

text: Chronic Control

text: Fayoumi line

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: chicken

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: liver

characteristic: organism part

text: Gallus gallus

text: Male

characteristic: sex

text: Chronic Heat Stress

text: Fayoumi line


characteristic: External Id

text: UNIVERSITY OF NEW HAMPSHIRE

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF NEW HAMPSHIRE

characteristic: Submitter Id

text: Geosmithia morbida

text: Geosmithia morbida

text: Genome of Geosmithia morbida


E-MTAB-4571:Cytosolic RNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-4571:Cytosolic RNA

tag: Namespace:Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University

text: ArrayExpress

text: fruit fly

text: Protocols: Total RNA was isolated by homogenization of dechorionated embryos, followed by the RNA extraction protocol with Trizol. The total RNA was then treated with DNase I to eliminate genomic DNA contamination. The enrichment for poly-adenylated RNAs was also performed using Dynabeads oligo (dT)25 purification. Cytosolic RNA was isolated from the supernatant of the embryo extract before loading onto sucrose gradient. The enrichment for poly-adenylated RNAs was also performed using Dynabeads oligo (dT)25 purification. To obtain the ribosome material, the dechorionated embryos were immediately incubated with 100 μg/ml cycloheximide in PBS for 5 min on ice, then the embryos were homogenized with a plastic pellet pestle in 100 μl of a mild ribosome lysis buffer (20 mM Tris-HCl, pH 7.4, 140 mM KCl, 5 mM MgCl2, 0.5 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide, 0.5 unit/ml RNasin) and incubated for 10 min on ice. The nuclei and whole cells were removed by centrifugation at 16,000 x g for 10 min at 4 °C, and the lipid and other membranes were filtered out from the supernatant using a 100 μm sieve mesh. Finally, the cytosolic supernatant was loaded onto 20% to 50% continuous sucrose density gradients with the lysis buffer (20 mM Tris-HCl, pH 7.4, 140 mM KCl, 5 mM MgCl2, 0.5 mM DTT), followed by ultracentrifugation at 35,000 rpm for 2.5 hr in a SW41 rotor at 4 °C (OptimaL-100 XP 2100 Ultracentrifuge, Beckman). Absorbance in each layer of the sucrose density gradient was measured at an optical density of 254 nm using the Piston Gradient Fractionater (BioComp). The RNA components and the amount of ribosomes were determined based on distinct peaks in the ribosome profiling. Ribosome material was collected by pooling both the 80S (monosome) and the polysome peaks identified in the profile. The ribosome-associated RNA was extracted by adding an equal volume of Trizol reagent to the ribosome material, followed by chloroform extraction and ethanol precipitation. The poly-adenylated RNA of ribosome-associated RNA was optimized using the RiboMinusTM Eukaryote Kit for RNA-Seq to delete ribosomal RNAs (rRNAs) and Dynabeads oligo (dT)25 purification to select RNAs with poly-adenylated tails. Illumina® TruSeq Stranded mRNA Sample Preparation

text: 0-4 hr embryo

characteristic: developmental stage

text: cytosolic RNA extraction

characteristic: fraction

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Cytosolic RNA


E-MTAB-4571:Ribosome RNA

text: Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4571:Ribosome RNA

text: ArrayExpress

characteristic: broker name

text: fruit fly

text: 0-4 hr embryo

text: ribosome RNA extraction

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Ribosome RNA


E-MTAB-4571:Total RNA

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4571:Total RNA

text: ArrayExpress

text: fruit fly

characteristic: common name

characteristic: description

text: 0-4 hr embryo

text: total RNA extraction

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Total RNA

characteristic: title


characteristic: External Id

text: University of Cambridge

text: public

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: ES cells were cultured on 0.1% gelatin-coated plates in 2i/LIF conditions. For neural differentiation, ES cells were plated onto laminin-coated plates in N2B27 media at a density of 100,000 per 6-well. Medium was replaced every day and the cells were not passaged during the timecourse. RNA was extracted with TRI Reagent (Sigma). Libraries were prepared with the NEXTflex Rapid Directional Illumina RNA-seq Library Prep Kit (Bioo Scientific)

text: Sall4 knock out

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: University of Cambridge

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Cambridge

characteristic: INSDC first public

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Sall1 knock out

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: University of Cambridge

characteristic: INSDC last update

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Sall4/1 double knock out

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: Functional Genomics Genter Zurich

text: public

characteristic: INSDC status

tag: Namespace:Functional Genomics Genter Zurich

text: bacterium 2013Ark19i

text: bacterium 2013Ark19i

text: Read data from Ca. Ichthyocystis


text: Vibrio cholerae O1

characteristic: ArrayExpress-Species

text: SC

text: public

text: Vibrio cholerae O1

text: Vibrio cholerae O1

text: Vibrio cholerae O1


MCF-7 Parental

text: UNIVERSITY OF COPENHAGEN

text: public

text: MCF-7 Parental

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-63

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Taxane resistant breast cancer cells


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COPENHAGEN

text: public

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-67

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


text: UNIVERSITY OF COPENHAGEN

text: public

text: human

characteristic: common name

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-70

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


text: UNIVERSITY OF COPENHAGEN

text: public

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-71

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


text: UNIVERSITY OF COPENHAGEN

text: public

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-72

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells

characteristic: title


characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

text: public

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-73

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


MDA-MB-231 Parental

text: UNIVERSITY OF COPENHAGEN

text: public

text: MDA-MB-231 Parental

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-75

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


text: UNIVERSITY OF COPENHAGEN

text: public

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-76

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


text: UNIVERSITY OF COPENHAGEN

text: public

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-79

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


text: UNIVERSITY OF COPENHAGEN

text: public

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-90

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


text: UNIVERSITY OF COPENHAGEN

text: public

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-93

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


text: UNIVERSITY OF COPENHAGEN

text: public

text: human

text: Folder name: 120612_I247_FCC0TYDACXX_L3_HUMkwmXAACAACPEI-94

text: Homo sapiens

text: Homo sapiens

text: Taxane resistant breast cancer cells


text: IBSC

text: public

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: Barley BACs


text: Functional Genomics Genter Zurich

text: public

text: bacterium 2013Ark19i

text: bacterium 2013Ark19i

text: Read data from. Ca. Ichthyocystis


Delftia strain 2189

text: National Public Health Laboratory

text: public

text: Delftia strain 2189

tag: Namespace:National Public Health Laboratory

text: The excessive global use of antimicrobial drugs in humans as well as agriculture and veterinary medicine has led to the emergence of new multidrug resistant pathogens. Many of these pathogens are globally spread and treatment options for clinicians are becoming limited. Our research indicates that Delftia spp. produce novel anti-bacterial compounds active against Gram positive and Gram negative multidrug resistant pathogens.

text: Delftia acidovorans

text: Delftia acidovorans

text: Isolation of antimicrobial compounds from the genus Delftia.


text: public

tag: Namespace:Cell Biology & Plant Biochemistry  University of Regensburg

text: ArrayExpress

characteristic: broker name

text: Protocols: Fusarium conidia were grown and cultivated in Erlenmeyer flasks that contain liquid complete medium as 25-40% of the total volume of the flask for 3 days on a rotary shaker at 175 rpm, at 28°C. The mycelium was then separated from the medium by filtration, washed up and stored at -80°C. Total RNA was prepared by grinding tissues in liquid nitrogen and total RNA was extracted by TRIzol reagent (TRIzol Plus RNA Purification Kit, Ambion) and processed following the protocol provided by manufacturer. To remove DNA within extraction and purification procedures, total RNA was treated with DNase (Qiagen), then total RNA was quantified and visualized on a Bioanalyzer (Agilent). Library preparation and RNAseq were carried out as described in the Illumina TruSeq RNA Sample Preparation v2 Guide, the Illumina HiSeq 1000 System User Guide (Illumina, Inc., San Diego, CA, USA), and the KAPA Library Quantification Kit - Illumina/ABI Prism User Guide (Kapa Biosystems, Inc., Woburn, MA, USA). In brief, 500 ng of total RNA was used for purifying the poly-A containing mRNA molecules using poly-dT oligo-attached magnetic beads. Following purification, the mRNA was fragmented to an average insert size of 200-400 bases using divalent cations under elevated temperature (94°C for 4 minutes). The cleaved RNA fragments were copied into first strand cDNA using reverse transcriptase and random primers, followed by second strand cDNA synthesis using DNA Polymerase I and RNase H. The resulting cDNA fragments subsequently went through an end repair process, the addition of a single ‘A’ base, the ligation of the adapters, and a purification step. Finally the cDNA libraries were created by PCR enrichment. The libraries were quantified using the KAPA SYBR FAST ABI Prism Library Quantification Kit. Equimolar amounts of each library were used for cluster generation on the cBot (TruSeq PE Cluster Kit v3)

text: media

characteristic: growth condition

text: Fusarium graminearum

text: Fusarium graminearum

text: Fusarium graminearum


text: Cell Biology & Plant Biochemistry University of Regensburg

characteristic: INSDC center name

text: public

text: ArrayExpress

text: media

text: Fusarium graminearum

text: Fusarium graminearum

text: Fusarium graminearum


text: public

characteristic: SRA accession

text: ArrayExpress

text: media

text: Ustilago maydis

text: Ustilago maydis

text: Ustilago maydis


text: public

tag: Namespace:Center of Biomedical Research (CIBM) University of Granada

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: Protocols: Previously generated Sox9f/f; Sox8-/- mice were bred to Wt1-CreERT2 mice and the resulting double heterozygous offspring harboring the Cre allele was backcrossed to Sox9f/f; Sox8-/- mice to obtain heterozygous and homozygous compound Sox9; Sox8 conditional mutants. The same mating scheme was followed with the Sox9-CreERT2 mouse line. To report CRE activity, an R26R-EYFP reporter allele was crossed into Wt1-CreERT2; Sox9f/f; Sox8-/- and Sox9-CreERT2; Sox9f/f; Sox8-/- mice. Both testes were extracted from six 5 months old, TX-treated mutant males (three Wt1- CreERT2; Sox9f/f; Sox8-/- and three Sox9-CreERT2; Sox9f/f; Sox8-/-). As controls, both gonads were also extracted from four 5 months old control male mice (two TX-treated and two untreated) as well as from two 4-5 months old normal females. All TX-treated mice were euthanized three months after the initiation of diet TX-treatment for one month. The two gonads of each individual were pooled, homogenized in 1ml of RNAzol (Molecular Research Center, Inc.) per 100mg of tissue and the total RNAs were then individually purified from the twelve samples following the RNAzol manufacturer’s instructions. After successfully passing Macrogen Inc. quality check, the twelve RNAs were paired-end sequenced

text: Control male whithout tamoxifen treatment

characteristic: genetic modification

characteristic: genotype

text: Male

text: Mus musculus

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Center of Biomedical Research (CIBM) University of Granada

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: Protocols: Previously generated Sox9f/f; Sox8-/- mice were bred to Wt1-CreERT2 mice and the resulting double heterozygous offspring harboring the Cre allele was backcrossed to Sox9f/f; Sox8-/- mice to obtain heterozygous and homozygous compound Sox9; Sox8 conditional mutants. The same mating scheme was followed with the Sox9-CreERT2 mouse line. To report CRE activity, an R26R-EYFP reporter allele was crossed into Wt1-CreERT2; Sox9f/f; Sox8-/- and Sox9-CreERT2; Sox9f/f; Sox8-/- mice. Mice were feeded with a Tamoxifen (TX) supplemented diet (40mg TX/100g Harlan 2914 diet) for one month. TX administration were started at 2 months (P60). Both testes were extracted from six 5 months old, TX-treated mutant males (three Wt1- CreERT2; Sox9f/f; Sox8-/- and three Sox9-CreERT2; Sox9f/f; Sox8-/-). As controls, both gonads were also extracted from four 5 months old control male mice (two TX-treated and two untreated) as well as from two 4-5 months old normal females. All TX-treated mice were euthanized three months after the initiation of diet TX-treatment for one month. The two gonads of each individual were pooled, homogenized in 1ml of RNAzol (Molecular Research Center, Inc.) per 100mg of tissue and the total RNAs were then individually purified from the twelve samples following the RNAzol manufacturer’s instructions. After successfully passing Macrogen Inc. quality check, the twelve RNAs were paired-end sequenced

text: Tamoxifen treated control male

text: Male

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

text: Mus musculus


text: public

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: Control female

text: Female

text: Mus musculus

text: Mus musculus

text: animal ovary

text: Mus musculus

characteristic: title


characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Sox9-KO driven by Sox9-CreERT2

text: Male

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus


characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: Sox9-KO driven by Wt1-CreERT2

text: Male

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus


E-MTAB-4550:Sample 1

text: public

text: E-MTAB-4550:Sample 1

tag: Namespace:Cambridge Institute - Cancer Research UK and University of Cambridge

characteristic: Submitter Id

text: ArrayExpress

text: naked mole-rat

text: Protocols: Tissue samples for RNA extraction were collected in parallel to previously reported ChIP samples {Villar, 2015}. Small pieces of liver tissue (typically 0.5-2 cubic cms) were snap-frozen in dry-ice or liquid nitrogen and stored at -80C. Cetacean liver samples were typically bigger frozen blocks, and for these RNA extraction was conducted on tissue pieces cut from the central section of the frozen piece, to maximise RNA quality. Total RNA was extracted from snap-frozen liver tissue with RNAeasy Mini Kit (Qiagen). 20 mg of tissue were weighed on dry-ice and immediately homogenized in 600 microliters of RLT buffer containing 10 microliters of beta-mercaptoethanol per mililiter of buffer. Tissue samples were homogenized in a Precellys 24 tissue homogenizer, using settings 5500-2x15-015 and Precellys tubes CK28-R (bertin technology). Liver homogenates were processed according to manufacturers’ instructions (Qiagen RNAeasy Mini Kit) and total RNA eluted in 50ul RNAse-free water. 10ug total RNA from each sample were treated with 4 units of Turbo DNAse (Ambion AM1907), and total RNA samples were run on an Agilent Bioanalyser (RNA nano chip, Agilent) to check RNA integrity (samples were taken forward if RIN values were above 7). Ribosomal RNA was depleted with Ribo-Zero rRNA removal kit (Epicentre RZC110424) as per instructions from the manufacturer, using 5 ug of DNAse-treated total RNA. Strand-specific RNA-depleted RNA-Seq libraries were prepared with a modified version of TruSeq RNA Library Preparation kit (Illumina). Fragmentation and first-strand synthesis of rRNA-depleted RNA samples were according to the Illumina protocol. Second-strand cDNA synthesis was done with SuperScript double-stranded cDNA synthesis kit (Life Technologies) at 16C for two hours, using a 10mM dATP, dCTP, dGTP, dUTP nucleotide mix. cDNA was purified with QIAquick PCR purification kit (Qiagen) and end repair, A-tailing and adaptor ligation were performed with Illumina’s protocol. Second-strand degradation was done by treatment with one unit of Uracil N-Glycosylase (Life Technologies) at 35C for 15 minutes, prior to PCR enrichment. Libraries were amplified according to Illumina’s protocol for 13 PCR cycles, and cleaned-up with Agencourt AMPure beads (Beckman Coulter) with a 1:1 DNA:beads ratio.

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Heterocephalus glaber

text: Heterocephalus glaber

text: liver

text: Heterocephalus glaber

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 1


E-MTAB-4550:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cambridge Institute - Cancer Research UK and University of Cambridge

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4550:Sample 10

text: ArrayExpress

text: pig

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Sus scrofa

text: Sus scrofa

text: liver

characteristic: organism part

text: Sus scrofa

text: male

text: frozen specimen

text: Sample 10


E-MTAB-4550:Sample 11

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 11

text: ArrayExpress

text: northern tree shrew

characteristic: common name

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Tupaia belangeri

characteristic: organism

text: Tupaia belangeri

text: liver

text: Tupaia belangeri

text: male

text: frozen specimen

text: Sample 11

characteristic: title


E-MTAB-4550:Sample 12

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 12

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: male

text: frozen specimen

text: Sample 12


E-MTAB-4550:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4550:Sample 13

text: ArrayExpress

text: rabbit

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: liver

text: Oryctolagus cuniculus

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 13


E-MTAB-4550:Sample 14

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 14

text: ArrayExpress

text: rabbit

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: liver

characteristic: organism part

text: Oryctolagus cuniculus

text: male

text: frozen specimen

text: Sample 14


E-MTAB-4550:Sample 15

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-4550:Sample 15

text: ArrayExpress

text: rabbit

characteristic: common name

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Oryctolagus cuniculus

characteristic: organism

text: Oryctolagus cuniculus

text: liver

text: Oryctolagus cuniculus

text: male

text: frozen specimen

text: Sample 15

characteristic: title


E-MTAB-4550:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 16

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: dog

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Canis lupus familiaris

text: Canis familiaris

text: liver

text: Canis lupus familiaris

text: male

text: frozen specimen

text: Sample 16


E-MTAB-4550:Sample 17

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-4550:Sample 17

text: ArrayExpress

text: dog

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Canis lupus familiaris

text: Canis familiaris

text: liver

text: Canis lupus familiaris

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 17


E-MTAB-4550:Sample 18

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 18

text: ArrayExpress

text: dog

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Canis lupus familiaris

text: Canis familiaris

text: liver

characteristic: organism part

text: Canis lupus familiaris

text: male

text: frozen specimen

text: Sample 18


E-MTAB-4550:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4550:Sample 19

text: ArrayExpress

text: white-tufted-ear marmoset

characteristic: common name

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: liver

text: Callithrix jacchus

text: male

text: frozen specimen

text: Sample 19

characteristic: title


E-MTAB-4550:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naked mole-rat

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Heterocephalus glaber

text: Heterocephalus glaber

text: liver

text: Heterocephalus glaber

text: male

text: frozen specimen

text: Sample 2


E-MTAB-4550:Sample 20

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-4550:Sample 20

text: ArrayExpress

text: white-tufted-ear marmoset

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Callithrix jacchus

text: Callithrix jacchus

text: liver

text: Callithrix jacchus

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 20


E-MTAB-4550:Sample 21

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 21

text: ArrayExpress

text: domestic cat

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Felis catus

text: Felis catus

text: liver

characteristic: organism part

text: Felis catus

text: female

text: frozen specimen

text: Sample 21


E-MTAB-4550:Sample 22

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-4550:Sample 22

text: ArrayExpress

text: domestic cat

characteristic: common name

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Felis catus

characteristic: organism

text: Felis catus

text: liver

text: Felis catus

text: female

text: frozen specimen

text: Sample 22

characteristic: title


E-MTAB-4550:Sample 23

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 23

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: domestic ferret

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Mustela putorius furo

text: Mustela putorius furo

text: liver

text: Mustela putorius furo

text: male

text: frozen specimen

text: Sample 23


E-MTAB-4550:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4550:Sample 24

text: ArrayExpress

text: domestic ferret

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Mustela putorius furo

text: Mustela putorius furo

text: liver

text: Mustela putorius furo

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 24


E-MTAB-4550:Sample 25

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 25

text: ArrayExpress

text: domestic ferret

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Mustela putorius furo

text: Mustela putorius furo

text: liver

characteristic: organism part

text: Mustela putorius furo

text: male

text: frozen specimen

text: Sample 25


E-MTAB-4550:Sample 26

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-4550:Sample 26

text: ArrayExpress

text: domestic guinea pig

characteristic: common name

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Cavia porcellus

characteristic: organism

text: Cavia porcellus

text: liver

text: Cavia porcellus

text: male

text: frozen specimen

text: Sample 26

characteristic: title


E-MTAB-4550:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 27

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Rattus norvegicus

text: Rattus norvegicus

text: liver

text: Rattus norvegicus

text: male

text: frozen specimen

text: Sample 27


E-MTAB-4550:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-4550:Sample 3

text: ArrayExpress

text: Ring-tailed lemur

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Lemur catta

text: Lemur catta

text: liver

text: Lemur catta

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 3


E-MTAB-4550:Sample 32

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 32

text: ArrayExpress

text: Rhesus monkey

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Steed

text: Macaca mulatta

text: Macaca mulatta

text: liver

characteristic: organism part

text: Macaca mulatta

text: male

text: frozen specimen

text: Sample 32


E-MTAB-4550:Sample 33

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4550:Sample 33

text: ArrayExpress

text: Rhesus monkey

characteristic: common name

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Larch

text: Macaca mulatta

characteristic: organism

text: Macaca mulatta

text: liver

text: Macaca mulatta

text: female

text: frozen specimen

text: Sample 33

characteristic: title


E-MTAB-4550:Sample 34

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 34

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Rhesus monkey

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Diesel

text: Macaca mulatta

text: Macaca mulatta

text: liver

text: Macaca mulatta

text: male

text: frozen specimen

text: Sample 34


E-MTAB-4550:Sample 35

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-4550:Sample 35

text: ArrayExpress

text: Rhesus monkey

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

text: Blues

characteristic: individual

text: Macaca mulatta

text: Macaca mulatta

text: liver

text: Macaca mulatta

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 35


E-MTAB-4550:Sample 36

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 36

text: ArrayExpress

text: cattle

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: liver

characteristic: organism part

text: Bos taurus

text: male

text: frozen specimen

text: Sample 36


E-MTAB-4550:Sample 37

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-4550:Sample 37

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Bos taurus

characteristic: organism

text: Bos taurus

text: liver

text: Bos taurus

text: male

text: frozen specimen

text: Sample 37

characteristic: title


E-MTAB-4550:Sample 38

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 38

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Bos taurus

text: Bos taurus

text: liver

text: Bos taurus

text: male

text: frozen specimen

text: Sample 38


E-MTAB-4550:Sample 39

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4550:Sample 39

text: ArrayExpress

text: human

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 39


E-MTAB-4550:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 4

text: ArrayExpress

text: gray mouse lemur

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Microcebus murinus

text: Microcebus murinus

text: liver

characteristic: organism part

text: Microcebus murinus

text: male

characteristic: sex

text: frozen specimen

text: Sample 4


E-MTAB-4550:Sample 40

characteristic: External Id

characteristic: INSDC first public

text: public

text: E-MTAB-4550:Sample 40

text: ArrayExpress

text: Sowerby's beaked whale

characteristic: common name

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Mesoplodon bidens

characteristic: organism

text: Mesoplodon bidens

text: liver

text: Mesoplodon bidens

text: female

text: frozen specimen

text: Sample 40

characteristic: title


E-MTAB-4550:Sample 41

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 41

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: sei whale

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Balaenoptera borealis

text: Balaenoptera borealis

text: liver

text: Balaenoptera borealis

text: female

text: frozen specimen

text: Sample 41


E-MTAB-4550:Sample 42

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: E-MTAB-4550:Sample 42

text: ArrayExpress

text: white-beaked dolphin

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Lagenorhynchus albirostris

text: Lagenorhynchus albirostris

text: liver

text: Lagenorhynchus albirostris

text: female

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 42


E-MTAB-4550:Sample 43

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 43

text: ArrayExpress

text: Sowerby's beaked whale

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Mesoplodon bidens

text: Mesoplodon bidens

text: liver

characteristic: organism part

text: Mesoplodon bidens

text: female

characteristic: sex

text: frozen specimen

text: Sample 43


E-MTAB-4550:Sample 44

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-4550:Sample 44

text: ArrayExpress

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Chlorocebus aethiops sabaeus

characteristic: organism

text: Chlorocebus sabaeus

text: liver

text: Chlorocebus sabaeus

text: female

text: frozen specimen

text: Sample 44

characteristic: title


E-MTAB-4550:Sample 45

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 45

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Chlorocebus aethiops sabaeus

text: Chlorocebus sabaeus

text: liver

text: Chlorocebus sabaeus

text: female

text: frozen specimen

text: Sample 45


E-MTAB-4550:Sample 46

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: E-MTAB-4550:Sample 46

text: ArrayExpress

text: naked mole-rat

characteristic: common name

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Heterocephalus glaber

text: Heterocephalus glaber

text: liver

text: Heterocephalus glaber

text: male

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 46


E-MTAB-4550:Sample 47

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 47

text: ArrayExpress

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Chlorocebus aethiops sabaeus

text: Chlorocebus sabaeus

text: liver

characteristic: organism part

text: Chlorocebus sabaeus

text: female

characteristic: sex

text: frozen specimen

text: Sample 47


E-MTAB-4550:Sample 48

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: E-MTAB-4550:Sample 48

text: ArrayExpress

text: Norway rat

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: liver

text: Rattus norvegicus

text: male

text: frozen specimen

text: Sample 48

characteristic: title


E-MTAB-4550:Sample 49

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 49

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Tasmanian devil

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Montgomery

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: liver

text: Sarcophilus harrisii

text: male

text: frozen specimen

text: Sample 49


E-MTAB-4550:Sample 5

characteristic: External Id

characteristic: INSDC first public

text: public

text: E-MTAB-4550:Sample 5

text: ArrayExpress

text: aye-aye

characteristic: common name

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Daubentonia madagascariensis

text: Daubentonia madagascarensis

text: liver

text: Daubentonia madagascariensis

text: male

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 5


E-MTAB-4550:Sample 50

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 50

text: ArrayExpress

text: naked mole-rat

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Heterocephalus glaber

text: Heterocephalus glaber

text: liver

characteristic: organism part

text: Heterocephalus glaber

text: male

characteristic: sex

text: frozen specimen

text: Sample 50


E-MTAB-4550:Sample 51

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-4550:Sample 51

text: ArrayExpress

text: northern tree shrew

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Tupaia belangeri

characteristic: organism

text: Tupaia belangeri

text: liver

text: Tupaia belangeri

text: male

text: frozen specimen

text: Sample 51

characteristic: title


E-MTAB-4550:Sample 52

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 52

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: northern tree shrew

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Tupaia belangeri

text: Tupaia belangeri

text: liver

text: Tupaia belangeri

text: female

text: frozen specimen

text: Sample 52


E-MTAB-4550:Sample 53

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4550:Sample 53

text: ArrayExpress

text: northern tree shrew

characteristic: common name

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Tupaia belangeri

text: Tupaia belangeri

text: liver

text: Tupaia belangeri

text: female

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 53


E-MTAB-4550:Sample 54

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 54

text: ArrayExpress

text: gray short-tailed opossum

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

characteristic: organism part

text: Monodelphis domestica

text: male

characteristic: sex

text: frozen specimen

text: Sample 54


E-MTAB-4550:Sample 55

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4550:Sample 55

text: ArrayExpress

text: Tasmanian devil

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Mariah

text: Sarcophilus harrisii

characteristic: organism

text: Sarcophilus harrisii

text: liver

text: Sarcophilus harrisii

text: female

text: frozen specimen

text: Sample 55

characteristic: title


E-MTAB-4550:Sample 56

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 56

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: domestic guinea pig

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Cavia porcellus

text: Cavia porcellus

text: liver

text: Cavia porcellus

text: male

text: frozen specimen

text: Sample 56


E-MTAB-4550:Sample 57

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: E-MTAB-4550:Sample 57

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 57


E-MTAB-4550:Sample 58

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 58

text: ArrayExpress

text: saddleback dolphin

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Delphinus delphis

text: Delphinus delphis

text: liver

characteristic: organism part

text: Delphinus delphis

text: female

characteristic: sex

text: frozen specimen

text: Sample 58


E-MTAB-4550:Sample 59

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-4550:Sample 59

text: ArrayExpress

text: domestic guinea pig

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Cavia porcellus

characteristic: organism

text: Cavia porcellus

text: liver

text: Cavia porcellus

text: male

text: frozen specimen

text: Sample 59

characteristic: title


E-MTAB-4550:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 6

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: small-eared galago

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Otolemur garnettii

text: Otolemur garnettii

text: liver

text: Otolemur garnettii

text: male

text: frozen specimen

text: Sample 6


E-MTAB-4550:Sample 63

characteristic: External Id

characteristic: INSDC first public

text: public

text: E-MTAB-4550:Sample 63

text: ArrayExpress

text: Norway rat

characteristic: common name

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: liver

text: Rattus norvegicus

text: male

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 63


E-MTAB-4550:Sample 64

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 64

text: ArrayExpress

text: cattle

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: liver

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: frozen specimen

text: Sample 64


E-MTAB-4550:Sample 65

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-4550:Sample 65

text: ArrayExpress

text: saddleback dolphin

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Delphinus delphis

characteristic: organism

text: Delphinus delphis

text: liver

text: Delphinus delphis

text: female

text: frozen specimen

text: Sample 65

characteristic: title


E-MTAB-4550:Sample 66

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 66

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: white-beaked dolphin

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Lagenorhynchus albirostris

text: Lagenorhynchus albirostris

text: liver

text: Lagenorhynchus albirostris

text: male

text: frozen specimen

text: Sample 66


E-MTAB-4550:Sample 67

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4550:Sample 67

text: ArrayExpress

text: saddleback dolphin

characteristic: common name

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Delphinus delphis

text: Delphinus delphis

text: liver

text: Delphinus delphis

text: female

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 67


E-MTAB-4550:Sample 68

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 68

text: ArrayExpress

text: white-tufted-ear marmoset

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Callithrix jacchus

text: Callithrix jacchus

text: liver

characteristic: organism part

text: Callithrix jacchus

text: male

characteristic: sex

text: frozen specimen

text: Sample 68


E-MTAB-4550:Sample 69

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4550:Sample 69

text: ArrayExpress

text: white-tufted-ear marmoset

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: liver

text: Callithrix jacchus

text: male

text: frozen specimen

text: Sample 69

characteristic: title


E-MTAB-4550:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-4550:Sample 7

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: slow loris

text: adult

characteristic: developmental stage

text: total RNA (rRNA-depleted)

text: wild type

text: Nycticebus coucang

text: Nycticebus coucang

text: liver

text: Nycticebus coucang

text: male

text: frozen specimen

text: Sample 7


E-MTAB-4550:Sample 70

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: E-MTAB-4550:Sample 70

text: ArrayExpress

text: gray short-tailed opossum

characteristic: common name

text: adult

text: total RNA (rRNA-depleted)

characteristic: fraction

text: wild type

characteristic: individual

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: male

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 70


E-MTAB-4550:Sample 8

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-4550:Sample 8

text: ArrayExpress

text: pig

text: adult

text: total RNA (rRNA-depleted)

text: wild type

characteristic: genotype

text: Sus scrofa

text: Sus scrofa

text: liver

characteristic: organism part

text: Sus scrofa

text: male

characteristic: sex

text: frozen specimen

text: Sample 8


E-MTAB-4550:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-4550:Sample 9

text: ArrayExpress

text: pig

characteristic: description

text: adult

text: total RNA (rRNA-depleted)

text: wild type

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: liver

text: Sus scrofa

text: male

text: frozen specimen

text: Sample 9

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Philipps University Marburg

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:Philipps University Marburg

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: fruit fly

text: Protocols: S2 cell lines were maintained under standard conditions. The conditions for S2 cell incubation for all experiments were set to six hours treatment with 1μM 20HE (in 5% EtOH). S2 nuclear and whole cell extracts were prepared and immunoprecipitated as described (Kunert et al., 2009; Meier et al., 2012). For immunoprecipitation of endogenous Mi-2, Protein G Sepharose was preincubated for 1hr with 1% fish skin gelatine and buffer D (0.2 mg/mL BSA in 20 mM Hepes KOH, pH 7.6 100 mM KCl 1.5 mM MgCl2, 0.2 mM EDTA, 20% (v/v) Glycerol, 0.1 mM DTT, protease inhibitors) at room temperature. Antibodies were incubated with pre-blocked Protein G sepharose for 1 hr at 4°C. Beads were washed twice with buffer D / 0.02% NP40 and transferred to low-binding tubes. 30ul of Protein G Sepharose were incubated with nuclear extract for 3 hrs at 4°C. The beads were washed five times with buffer D/0.02% NP40 and eluted with 40ul 2x SDS loading buffer. ChIP samples were sequenced on an Illumina IIx Genome Analyzer according to the manufacturer's instructions.

text: rat monoclonal antidMi-2 (4D8)

characteristic: immunoprecipitate

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:Laboratory of Translational Genetics  Vesalius research Centre, VIB Department of Oncology, KU Leuven

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Samples were collected as descibed in Epigenetic regulation and transcriptional repression by Tet1 in the post-implantation mouse embryo by Khoueiry et al. Libraries were prepared using NEBNext Ultra DNA library prep for Illumina

text: pre-primitive streak stage embryo

characteristic: developmental stage

text: Tet1 gt/gt

characteristic: individual

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Laboratory of Translational Genetics Vesalius research Centre, VIB Department of Oncology, KU Leuven

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: pre-primitive streak stage embryo

text: Tet1 gt/gt

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: pre-primitive streak stage embryo

text: Tet1 gt/wt

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

text: pre-primitive streak stage embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: ZMBH

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Protocols: polysome gradient Culture Illumina standard kit

text: Procyclic

text: Input

characteristic: fraction

text: 39 degree celsius 1 hour

characteristic: growth condition

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei


text: ZMBH

text: public

characteristic: INSDC status

text: ArrayExpress

text: Procyclic

characteristic: developmental stage

text: Light polysomes

text: 39 degree celsius 1 hour

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei


text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF BRISTOL

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF BRISTOL

text: Aedes aegypti Aag2

characteristic: cell type

text: Aedes aegypti Aag2 cell transcriptome

characteristic: description

text: Aedes aegypti aegypti

characteristic: organism

text: Aedes aegypti aegypti

text: Aedes aegypti Aag2 cell transcriptome


text: UPSC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Norway spruce

text: H2O treatment for 5 days - replicate 1

text: Picea abies

text: Picea abies

characteristic: title


characteristic: External Id

text: UPSC

characteristic: INSDC first public

text: public

text: Norway spruce

text: H2O treatment for 5 days - replicate 2

text: Picea abies

text: Picea abies


text: UPSC

text: public

characteristic: INSDC status

text: Norway spruce

text: H2O treatment for 5 days - replicate 3

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 5 days - replicate 1

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 5 days - replicate 2

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 5 days - replicate 3

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 20 days - replicate 1

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 20 days - replicate 2

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 20 days - replicate 3

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 20 days - KI removal - culturing for further 4 days in the standard nutrient medium - replicate 1

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 20 days - KI removal - culturing for further 4 days in the standard nutrient medium - replicate 2

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 20 days - KI removal - culturing for further 4 days in the standard nutrient medium - replicate 3

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 20 days - KI removal - culturing for further 12 days in the standard nutrient medium - replicate 1

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 20 days - KI removal - culturing for further 12 days in the standard nutrient medium - replicate 2

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: KI treatment for 20 days - KI removal - culturing for further 12 days in the standard nutrient medium - replicate 3

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: Cells on the solid maintenance medium (time 0) - harvested just prior to initiation of liquid cultures - replicate 1

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: Cells on the solid maintenance medium (time 0) - harvested just prior to initiation of liquid cultures - replicate 2

text: Picea abies

text: Picea abies


text: UPSC

text: public

text: Norway spruce

text: Cells on the solid maintenance medium (time 0) - harvested just prior to initiation of liquid cultures - replicate 3

text: Picea abies

text: Picea abies


text: public

tag: Namespace:CNRS - CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQU

text: Rpro 454 RNAseq

text: Rhodnius prolixus

text: Rhodnius prolixus

text: Head Antenna Rostrum

characteristic: tissue lib


tag: attribute

text: CORNELL

text: public

characteristic: collection date

text: human

text: Feces

characteristic: environment (biome)

text: Feces

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: 40.7127� N

characteristic: geographic location (latitude)

text: 74.0059� W

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method

text: CFS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

characteristic: Submitter Id

text: gut metagenome

characteristic: common name

text: Human fecal bacterial V4-16S rRNA

characteristic: description

text: gut

text: gut

text: fecal sample

text: USA

text: human-gut

text: metagenome

text: gut metagenome

characteristic: organism

text: gut metagenome

text: Illumina


characteristic: External Id

text: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

text: gut metagenome

text: Human fecal bacterial V4-16S rRNA

text: gut

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: fecal sample

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: gut metagenome

text: gut metagenome

text: Illumina

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Laboratory of Translational Genetics Vesalius Research Center, VIB Department of Oncology, KU Leuven

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: house mouse

text: Protocols: Samples were collected as descibed in Epigenetic regulation and transcriptional repression by Tet1 in the post-implantation mouse embryo by Khoueiry et al. MeDIP and hMeDIP were performed on genomic DNA extracted from EpiLCs as previously described (O. Taiwo et al., Nat.Protoc, 2012 ]. For MeDIP and hMeDIP, anti-5mC (Eurogentec BI-MECY-0100) and anti-5hmC (Active Motif #39791) were used respectively MeDIP and hMeDIP were performed on genomic DNA extracted from EpiLCs as previously described (O. Taiwo et al., Nat.Protoc, 2012 ]. For MeDIP and hMeDIP, anti-5mC (Eurogentec BI-MECY-0100) and anti-5hmC (Active Motif #39791) were used respectively

text: Input

characteristic: experiment type

text: Tet1 gt/gt

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: Laboratory of Translational Genetics Vesalius Research Center, VIB Department of Oncology, KU Leuven

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: Input

text: Tet1 gt/gt

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: Input

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: house mouse

text: hmeDIP

text: Tet1 gt/gt

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: house mouse

text: hmeDIP

characteristic: experiment type

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: public

text: ArrayExpress

text: house mouse

text: meDIP

text: Tet1 gt/gt

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: meDIP

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

characteristic: Submitter Id

text: ArrayExpress

text: EpiLC

text: house mouse

characteristic: common name

characteristic: description

text: meDIP

text: Tet1 gt/gt

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: EpiLC

text: house mouse

text: meDIP

text: Tet1 gt/wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: EpiLC

text: house mouse

text: meDIP

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: EpiLC

characteristic: cell type

text: house mouse

text: hmeDIP

text: Tet1 gt/gt

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: public

text: ArrayExpress

text: EpiLC

text: house mouse

text: hmeDIP

characteristic: experiment type

text: Tet1 gt/wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ArrayExpress

text: EpiLC

text: house mouse

text: hmeDIP

text: wild type genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: EpiLC

text: house mouse

characteristic: common name

text: Input

text: Tet1 gt/gt

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: EpiLC

text: house mouse

characteristic: description

text: Input

text: Tet1 gt/wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: EpiLC

text: house mouse

text: Input

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


Cladophialophora bantiana UM 956

characteristic: ENA-LAST-UPDATE

text: University Malaya

text: public

text: Cladophialophora bantiana UM 956

tag: Namespace:University Malaya

text: Cladophialophora bantiana is a dematiaceous fungus that cause central nervous system (CNS) infection in both immunocompetent and immunocompromised patients. In this work, C. bantiana UM 956 was recovered from the cerebrospinal fluid of a patient with brain abscess. The draft genome of the C. bantiana was generated by a combined assembly of two different insert-size Illumina sequencing libraries (5-kb insert-size library and 500-bp insert-size library). The generated genome will serve a platform to further understand its basic biology and its pathogenicity in human.

text: Cladophialophora bantiana

text: Cladophialophora bantiana

text: Cladophialophora bantiana UM 956 whole genome shotgun sequence assembly

characteristic: title


HeLa cCL

characteristic: External Id

text: VICTOR CHANG CARDIAC RESEARCH INSTITUTE

text: public

text: HeLa cCL

tag: Namespace:VICTOR CHANG CARDIAC RESEARCH INSTITUTE

text: human

text: Homo sapiens

text: Homo sapiens

text: HeLa cCL


HeLa cCL.2

text: VICTOR CHANG CARDIAC RESEARCH INSTITUTE

text: public

text: HeLa cCL.2

text: human

text: Homo sapiens

text: Homo sapiens

text: HeLa cCL.2


HeLa noCL.2

text: VICTOR CHANG CARDIAC RESEARCH INSTITUTE

text: public

text: HeLa noCL.2

text: human

text: Homo sapiens

text: Homo sapiens

text: HeLa nocCL.2


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A10

text: mouse stool

characteristic: isolation source

text: Mus musculus

text: Microbiome

characteristic: sample type

text: Mus musculus


text: MPI-EVB

characteristic: INSDC center name

text: public

text: house mouse

text: Stool microbiota from mouse number A11

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

characteristic: INSDC last update

text: public

text: house mouse

text: Stool microbiota from mouse number A12

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A13

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A14

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A15

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A16

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A1

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A2

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A3

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A4

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A5

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A6

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A7

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A8

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number A9

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B17

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B18

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B19

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B20

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B21

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B22

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B23

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B24

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B25

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B26

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B27

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B28

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number B29

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C30

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C31

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C32

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C33

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C34

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C35

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C36

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C37

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C38

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C39

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C40

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C41

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C42

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C43

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C44

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number C45

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number D46

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number D47

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number D48

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number D49

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number E50

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number E51

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number E52

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number E53

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number E54

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number E55

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number E56

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number F57

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number F58

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number F59

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number F60

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number F61

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number F62

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number F63

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: MPI-EVB

text: public

text: house mouse

text: Stool microbiota from mouse number F64

text: mouse stool

text: Mus musculus

text: Microbiome

text: Mus musculus


text: Streptococcus pyogenes

characteristic: ArrayExpress-Species

text: SC

text: public

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: for RNAseq

characteristic: sample description

text: Streptococcus pyogenes


text: CD4+ T cells

characteristic: ArrayExpress-CellType

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Immunoprecipitate

text: WT

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: strain


text: Homo sapiens

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


inbred

characteristic: External Id

text: IBSC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: inbred

text: Barley

text: F8 recombinant inbred line

characteristic: cultivar

text: WGS library

characteristic: description

text: Hordeum vulgare

text: Hordeum vulgare

text: inbred line


barke

text: IBSC

text: public

text: barke

text: Barley

text: Barke

text: WGS library

text: Hordeum vulgare

text: Hordeum vulgare

text: parent Barke


text: URMITE

text: public

text: Clostridium sp. Marseille-P299

text: Clostridium sp. Marseille-P299

text: Culturomics study of the human gut


text: public

tag: Namespace:Centro Nacional de Microbiologia, Instituto de Salud Carlos III

text: Centro Nacional de Microbiología, Instituto de Salud Carlos III

characteristic: collecting institution

text: Michael Thomson

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HIV-1 06TG.HT008

text: HIV-1 06TG.HT008

text: HIV-1 doubly spliced RNA subtype C


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Centro Nacional de Microbiologia, Instituto de Salud Carlos III

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Michael Thomson

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: HIV-1 06TG.HT008

text: HIV-1 06TG.HT008

text: HIV-1 singly spliced RNA subtype C


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Michael Thomson

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: HIV-1 06TG.HT008

characteristic: organism

text: HIV-1 06TG.HT008

text: HIV-1 doubly spliced RNA subtype B

characteristic: title


text: public

characteristic: collecting institution

text: Michael Thomson

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: HIV-1 06TG.HT008

text: HIV-1 06TG.HT008

text: HIV-1 singly spliced RNA subtype B


characteristic: ENA-CHECKLIST

text: public

text: Michael Thomson

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HIV-1 06TG.HT008

text: HIV-1 06TG.HT008

text: HIV-1 doubly spliced RNA subtype G


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Michael Thomson

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: HIV-1 06TG.HT008

text: HIV-1 06TG.HT008

text: HIV-1 doubly spliced RNA subtype A1


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Michael Thomson

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: HIV-1 06TG.HT008

characteristic: organism

text: HIV-1 06TG.HT008

text: HIV-1 singly spliced RNA subtype A1


text: public

characteristic: collecting institution

text: Michael Thomson

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: HIV-1 06TG.HT008

text: HIV-1 06TG.HT008

text: HIV-1 doubly spliced RNA subtype F1

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: Michael Thomson

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: HIV-1 06TG.HT008

text: HIV-1 06TG.HT008

text: HIV-1 singly spliced RNA subtype F1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: JHI

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Perennial ryegrass

characteristic: common name

text: Genome sequencing in Lolium perenne F2 Biomass paternal grandparent

characteristic: description

text: Lolium perenne

text: Lolium perenne


text: male

characteristic: ArrayExpress-Sex

text: mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Homo sapiens

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

text: Homo sapiens

text: Brunello Plasmid lIbrary

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

text: URMITE

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Chryseobacterium sp. G972

text: Chryseobacterium sp. G972

text: Culturomics