E-MTAB-4398:Sample 33

text: public

text: E-MTAB-4398:Sample 33

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 7 day differentiated

characteristic: developmental stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: Sample 33


E-MTAB-4398:Sample 34

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4398:Sample 34

tag: Namespace:Institute of Environmental Medicine Karolinska Institute

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: neuronal stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: For differentiation experiments the cells were seeded at a density of 2000 cells/cm2 in suitable cell culture plates in DMEM complete cell medium. After 24 h the cell medium was replaced with differentiation medium consisting of DMEM:F12 medium (Gibco) supplemented with 2 mM glutamine (Gibco), 100 U penicillin/mL, 100 U streptomycin/mL (Gibco) and N2 supplement (1:100) (ThermoFischer Scientific). Half of this differentiation medium was changed every 3 days during differentiation. For RNA extraction, the cells were washed after exposure and total RNA was extracted using the RNeasy Mini Columns (Qiagen) according to the manufacturers instructions, including the purification step with DNase I treatment. Stranded mRNA-seq (Illumina TruSeq RNA HT with polyA-selection

characteristic: description

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 34

characteristic: title

type: has member


E-MTAB-4398:Sample 35

text: Institute of Environmental Medicine Karolinska Institute

text: public

text: E-MTAB-4398:Sample 35

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 7 day differentiated

characteristic: developmental stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: Sample 35


E-MTAB-4398:Sample 36

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4398:Sample 36

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 36


E-MTAB-4398:Sample 37

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4398:Sample 37

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 37


E-MTAB-4398:Sample 38

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4398:Sample 38

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 38


E-MTAB-4398:Sample 39

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4398:Sample 39

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 39


E-MTAB-4398:Sample 4

text: public

characteristic: SRA accession

text: E-MTAB-4398:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 4


E-MTAB-4398:Sample 5

text: public

text: E-MTAB-4398:Sample 5

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: neuronal stem cell

text: house mouse

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 5


E-MTAB-4398:Sample 6

text: public

text: E-MTAB-4398:Sample 6

text: ArrayExpress

text: neuronal stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 6


E-MTAB-4398:Sample 7

text: public

text: E-MTAB-4398:Sample 7

text: ArrayExpress

text: neuronal stem cell

text: house mouse

characteristic: description

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 7

characteristic: title


E-MTAB-4398:Sample 8

text: public

text: E-MTAB-4398:Sample 8

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 1 day differentiated

characteristic: developmental stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: Sample 8


E-MTAB-4398:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4398:Sample 9

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 9


Glasgow Blood

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF CANCER RESEARCH

text: public

text: Glasgow Blood

tag: Namespace:INSTITUTE OF CANCER RESEARCH

characteristic: age

text: human

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: tissue type

text: Blood germline reference


Glasgow Primary Colon

text: INSTITUTE OF CANCER RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Glasgow Primary Colon

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: colorectal cancer

text: Primary colorectal cancer


Glasgow Lung Met

text: INSTITUTE OF CANCER RESEARCH

text: public

text: Glasgow Lung Met

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: male

text: lung metastasis

text: Colorectal cancer metastasis to the lung


Glasgow Thyroid Met

text: INSTITUTE OF CANCER RESEARCH

text: public

text: Glasgow Thyroid Met

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: thyroid metastasis

text: Colorectal cancer metastasis to the thyroid

characteristic: title


Glasgow Chest Wall Met

text: INSTITUTE OF CANCER RESEARCH

text: public

text: Glasgow Chest Wall Met

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: chest wall metastasis

text: Needle track seeding from lung met to the chest wall


Glasgow Hurthle Adenoma

text: INSTITUTE OF CANCER RESEARCH

text: public

text: Glasgow Hurthle Adenoma

text: human

text: Homo sapiens

text: Homo sapiens

text: male

text: thyroid adenoma

text: Thyroid Hurthle adenoma (unrelated to colon cancer)


Read Until 1

text: DPSQ

text: public

text: Read Until 1

text: Testing read until - real time manipulation of sequencing.

characteristic: description

text: Enterobacteria phage lambda

text: Enterobacteria phage lambda

text: Read Until Illustrations


Read Until 2

text: DPSQ

text: public

text: Read Until 2

text: Enterobacteria phage lambda

characteristic: organism

text: Enterobacteria phage lambda

text: Read Until Illustrations


Read Until 3

characteristic: ENA-CHECKLIST

text: DPSQ

text: public

text: Read Until 3

text: Enterobacteria phage lambda

text: Enterobacteria phage lambda

text: Read Until Illustrations


Read Until 4

characteristic: ENA-FIRST-PUBLIC

text: DPSQ

text: public

text: Read Until 4

text: Enterobacteria phage lambda

text: Enterobacteria phage lambda

text: Read Until Illustrations


Read Until 5

characteristic: ENA-LAST-UPDATE

text: DPSQ

text: public

text: Read Until 5

text: Enterobacteria phage lambda

text: Enterobacteria phage lambda

text: Read Until Illustrations


Read Until 6

characteristic: External Id

text: DPSQ

text: public

text: Read Until 6

text: Enterobacteria phage lambda

text: Enterobacteria phage lambda

text: Read Until Illustrations


Read Until 7

text: DPSQ

text: public

text: Read Until 7

text: Enterobacteria phage lambda

text: Enterobacteria phage lambda

text: Read Until Illustrations


Read Until 8

text: DPSQ

text: public

text: Read Until 8

text: Enterobacteria phage lambda

text: Enterobacteria phage lambda

text: Read Until Illustrations


text: public

tag: Namespace:ZHEJIANG UNIVERSITY, HANGZHOU, P. R. CHINA

text: 16S ribosomal RNA gene, partial sequence

text: rumen bacterium 1/9293-11A

text: rumen bacterium 1/9293-11A

text: bacteria of rumen culture


text: ZHEJIANG UNIVERSITY, HANGZHOU, P. R. CHINA

text: public

text: rumen bacterium 1/9293-11A

text: rumen bacterium 1/9293-11A

text: bacteria of rumen culture


text: MONASH UNIVERSITY

text: public

tag: Namespace:MONASH UNIVERSITY

text: Bacillus circulans strain ATCC21656

text: Bacillus circulans

text: Bacillus circulans

text: Bacillus circulans strain ATCC21656


text: public

text: archaeal 16S rRNA gene, , partial sequence

text: unidentified archaeon

text: unidentified archaeon

text: archaea of rumen culture


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Sample homozygous for drosha, allele sa191. Total RNA from a 5 dpf zebrafish embryo treated with DNase.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: Sample wild-type for drosha, allele sa191. Total RNA from a 5 dpf zebrafish embryo treated with DNase.

text: Danio rerio

text: mixed


text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: Sample homozygous for dicer, allele sa9205. Total RNA from a 5 dpf zebrafish embryo treated with DNase.

text: Danio rerio

text: mixed

characteristic: title


text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: Sample wild-type for dicer, allele sa9205. Total RNA from a 5 dpf zebrafish embryo treated with DNase.

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Sample homozygous for dgcr8, allele sa223. Total RNA from a 5 dpf zebrafish embryo treated with DNase.

text: Danio rerio

text: mixed


text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Sample wild-type for dgcr8, allele sa223. Total RNA from a 5 dpf zebrafish embryo treated with DNase.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: UB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

characteristic: description

unit: KB

characteristic: estimated size

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: MinION (Oxford Nanopore Technologies), SQK-MAP005/R7.3 chemistry

characteristic: seq meth

text: Ebolavirus surveillance using portable nanopore sequencing sample EM_COY_2015_016743


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Zaire ebolavirus

characteristic: common name

text: RNA isolated from 50 µl of semen

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Specimen pot

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample EM_COY_2015_023888

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 140 µl serum

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

characteristic: organism

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample CON_12930


text: UB

characteristic: INSDC center name

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample REDC_GUI_2015_02242


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample EM_FORE_2015_2549


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from oral swab resuspended in 140 µl buffer AVL

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Swab

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample EM_FORE_2015_2781


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample EM_FORE_2015_2878


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample REDC_GUI_2015_01165


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample REDC_GUI_2015_01323


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample REDC_GUI_2015_01408


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample 076383


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample 076533


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample 076534


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample 076769


text: UB

text: public

text: Zaire ebolavirus

text: RNA isolated from 50 µl of whole blood

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: Ebolavirus surveillance using portable nanopore sequencing sample 078416


text: UB

text: public

text: Zaire ebolavirus

text: Archived Zaire Mayinga RNA

text: QIAamp Viral RNA Mini Kit

text: Zaire ebolavirus

text: Vacutainer

text: Zaire ebolavirus

text: MinION (Oxford Nanopore Technologies), SQK-MAP005/R7.3 chemistry

text: Ebolavirus surveillance using portable nanopore sequencing sample DSTL-Zaire-Ebolavirus


text: public

tag: Namespace:BIODIVERSITY AND CLIMATE RESEARCH CENTER, FRANKFUR

text: Giraffe genome sequencing on Illumina platform. DNA was extracted from whole skin biopsy sample of Kordofan giraffe.

text: Giraffa camelopardalis antiquorum

text: Giraffa camelopardalis antiquorum

text: Illumina one lane sequencing of Giraffe genome


text: public

tag: Namespace:Wolfson Wohl Cancer Research Centre, Institute of Cancer Sciences, University of Glasgow

text: ArrayExpress

characteristic: broker name

text: mouse cell line

characteristic: cell line

text: house mouse

text: Protocols: Unknown RNA-Seq libraries were generated using the Illumina TruSeq Stranded Total RNA LT sample preparation kit (with Ribo-Zero Gold) (Illumina, Part no. RS-122-2301 and RS-1222302), according to the standard manufacturers protocol (Part no. 15031048 Rev. D April 2013), except they were made in an automated high-throughput fashion using Perkin Elmers Sciclone G3 NGS Workstation (Product no. SG3-31020-0300). The ribosomal depletion step was performed on 1 g of total RNA using Ribo-Zero Gold prior to a heat fragmentation step aimed at producing libraries with an insert size between 120-200 bp. cDNA was then synthesized from the enriched and fragmented RNA using SuperScript II Reverse Transcriptase (Invitrogen, Catalog no. 18064) and random primers. The resulting cDNA was converted into double stranded DNA in the presence of dUTP to prevent subsequent amplification of the second strand and thus maintain the strandedness of the library. Following 3 adenylation and adaptor ligation, libraries were subjected to 15 cycles of PCR to produce RNA-Seq libraries ready for sequencing. Prior to sequencing, RNA-Seq libraries were qualified via the Perkin Elmer LabChip GX with the DNA High Sensitivity LabChip kit (Perkin Elmer, Part no. CLS760672). Quantification of libraries for clustering was performed using the KAPA Library Quantification Kit - Illumina/Universal (KAPA Biosystems, Part no. KK4824) in combination with the Life Technologies Viia 7 real time PCR instrument.

characteristic: individual

text: KRAS Trp53fl/+ Trp63fl/fl

characteristic: kras status

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: Wolfson Wohl Cancer Research Centre, Institute of Cancer Sciences, University of Glasgow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: mouse cell line

text: house mouse

characteristic: description

text: KRAS Trp53fl/+ Trp63fl/fl

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: mouse cell line

text: house mouse

text: KRAS Trp53fl/+

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: University of Copenhagen

text: public

characteristic: SRA accession

tag: Namespace:University of Copenhagen

characteristic: Submitter Id

characteristic: collection date

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

text: Human

characteristic: isolate

text: Human

characteristic: isolation source

text: Propionibacterium acnes

text: Propionibacterium acnes

text: Human cancer samples


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUND UNIVERSITY

characteristic: INSDC center name

text: public

tag: Namespace:LUND UNIVERSITY

unit: m

characteristic: depth

text: soil

characteristic: environment (biome)

text: terrestrial

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Sweden

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:IMPERIAL COLLEGE

characteristic: Submitter Id

text: Faeces

characteristic: bio material

text: human gut microbiome

characteristic: common name

text: Pre-term infant

characteristic: host

text: Faeces

characteristic: note

text: human gut metagenome

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEBITEC

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: depth

text: Sequencing of different Actinoplanes sp. SE50/110 mutants

characteristic: description

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: isolate

text: Actinoplanes sp. SE50/110

text: Actinoplanes sp. SE50/110

text: Illumina MiSeq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WEIZMANN INSTITUE OF SCIENCE

characteristic: Submitter Id

text: Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Bacillus subtilis subsp. subtilis str. 168

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

text: public

text: Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNAseq

characteristic: description


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Grown in TB (terrific broth) media at 37c to OD600 = 0.1-0.2; 5' end sequencing of Tobacco Acid Pyrophosphatase (TAP) treated RNA


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Grown in TB media at 37c to OD600 = 0.1-0.2;5' end sequencing of control RNA (noTAP)


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Grown in M9 media at 37c to OD600 = 0.3; Media contained both lysine and methionine; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Grown in M9 media at 37c to OD600 = 0.1-0.2; Media contained methionine but no lysine; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Grown in M9 media at 37c to OD600 = 0.1-0.2; Media contained lysine but not methionine; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Chloramphenicol (Cap) 0.2 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Erythromycin (Em) 0.0156 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Kanamycin (Km) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Ofloxacin (Oflox) 0.0625 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Ampicillin (Amp) 0.0625 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Bacitracin (Bac) 0.125 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Chloramphenicol (Cap) 0.2 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Bacillus subtilis subsp. subtilis str. 168


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Erythromycin (Em) 0.0156 g/ml for 15min before harvesting and RNA extraction; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Kanamycin (Km) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Ofloxacin (Oflox) 0.0625 g/ml for 15min before harvesting and RNA extraction; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Ampicillin (Amp) 0.0625 g/ml for 15min before harvesting and RNA extraction; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: B. subtilis str 168; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Bacitracin (Bac) 0.125 g/ml for 15min before harvesting and RNA extraction; RNA-seq


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with none for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with none for 15min before harvesting and RNA extraction; RNA-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with none for 15min before harvesting and RNA extraction; 5' end sequencing of Tobacco Acid Pyrophosphatase (TAP) treated RNA

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with none for 15min before harvesting and RNA extraction; 5' end sequencing of control RNA (noTAP)

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Erythromycin (Em) 0.5 g/ml for 15min before harvesting and RNA extraction; 5' end sequencing of Tobacco Acid Pyrophosphatase (TAP) treated RNA

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Erythromycin (Em) 0.5 g/ml for 15min before harvesting and RNA extraction; 5' end sequencing of control RNA (noTAP)

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 2 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Chloramphenicol (Cap) 0.4 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Erythromycin (Em) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Kanamycin (Km) 16 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Ofloxacin (Oflox) 1 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Ampicillin (Amp) 2 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Bacitracin (Bac) 1 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 2 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Chloramphenicol (Cap) 0.4 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Erythromycin (Em) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Kanamycin (Km) 16 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Ofloxacin (Oflox) 1 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Ampicillin (Amp) 2 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. faecalis ATCC 29212; Grown in LB media at 37c to OD600 = 0.1-0.2; culture supplemented with Bacitracin (Bac) 1 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Enterococcus faecalis ATCC 29212

text: Enterococcus faecalis ATCC 29212


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.25 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.25 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Chloramphenicol (Cap) 0.4 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Erythromycin (Em) 0.03125 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Kanamycin (Km) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Ofloxacin (Oflox) 2 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Ampicillin (Amp) 1 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Bacitracin (Bac) 8 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Chloramphenicol (Cap) 0.4 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Erythromycin (Em) 0.03125 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Kanamycin (Km) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Ofloxacin (Oflox) 2 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Ampicillin (Amp) 1 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Bacitracin (Bac) 8 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; lmo0919 mutant in which 8nt of the anti-terminator were deleted; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; lmo0919 mutant in which 8nt of the anti-terminator were deleted; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; lmo0919 mutant in which 8nt of the anti-anti-terminator were deleted; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; lmo0919 mutant in which 8nt of the anti-anti-terminator were deleted; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; uORF mutant, ATG>ACG; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; uORF mutant, ATG>ACG; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; lmo0919 mutant in which 8nt of the anti-terminator were deleted; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; lmo0919 mutant in which 8nt of the anti-terminator were deleted; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; lmo0919 mutant in which 8nt of the anti-anti-terminator were deleted; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; lmo0919 mutant in which 8nt of the anti-anti-terminator were deleted; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; uORF mutant, ATG>ACG; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; uORF mutant, ATG>ACG; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; ermC cassete integrated into genome, taken from Balestrino et al. 2010; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; ermC cassete integrated into genome, taken from Balestrino et al. 2010; Grown in BHI media at 37c to OD600 = 0.1-0.2; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown inBHI media at 37c to OD600 = 0.4-0.5; culture supplemented with 0.5ug/ml licomycin for 15min before harvesting and RNA extraction; Ribosome profiling (RiboSeq)

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown inBHI media at 37c to OD600 = 0.4-0.5; culture; Ribosome profiling (RiboSeq)

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown inBHI media at 37c to OD600 = 0.4-0.5; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L.monocytogenes EGDe; Grown inBHI media at 37c to OD600 = 0.4-0.5; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L. innocua Clip11262; Grown inBHI media at 37c to OD600 = 0.4-0.5; culture supplemented with control media for 15min before harvesting and RNA extraction; Ribosome profiling (RiboSeq)

text: Listeria innocua Clip11262

text: Listeria innocua Clip11262


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L. innocua Clip11262; Grown inBHI media at 37c to OD600 = 0.4-0.5; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; Ribosome profiling (RiboSeq)

text: Listeria innocua Clip11262

text: Listeria innocua Clip11262


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L. innocua Clip11262; Grown inBHI media at 37c to OD600 = 0.4-0.5; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria innocua Clip11262

text: Listeria innocua Clip11262


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: L. innocua Clip11262; Grown inBHI media at 37c to OD600 = 0.4-0.5; culture supplemented with Lincomycin (Lm) 0.5 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: Listeria innocua Clip11262

text: Listeria innocua Clip11262


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Human oral microbiome samples; Incubated in BHI at 37c for 15min; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: human oral metagenome

text: human oral metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Human oral microbiome samples; Incubated in BHI at 37c for 15min; culture supplemented with Lincomycin (Lm) 1 g/ml for 15min before harvesting and RNA extraction; RNA 3' end sequencing with Term-seq

text: human oral metagenome

text: human oral metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Human oral microbiome samples; Incubated in BHI at 37c for 15min; culture supplemented with control media for 15min before harvesting and RNA extraction; RNA-seq

text: human oral metagenome

text: human oral metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Human oral microbiome samples; Incubated in BHI at 37c for 15min; culture supplemented with Lincomycin (Lm) 1 g/ml for 15min before harvesting and RNA extraction; RNA-seq

text: human oral metagenome

text: human oral metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Human oral microbiome bacteria; Incubated in BHI at 37c for 15min; culture supplemented with Lincomycin (Lm) 1 g/ml for 15min before harvesting and RNA extraction; 5' end sequencing of Tobacco Acid Pyrophosphatase (TAP) treated RNA

text: human oral metagenome

text: human oral metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Human oral microbiome samples; Incubated in BHI at 37c for 15min; culture supplemented with Lincomycin (Lm) 1 g/ml for 15min before harvesting and RNA extraction; 5' end sequencing of control RNA (noTAP)

text: human oral metagenome

text: human oral metagenome


text: public

tag: Namespace:KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY

characteristic: collection date

characteristic: depth

text: rhizosphere

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: glacier

characteristic: history/extreme events

text: metagenome

text: Saxifraga oppositifolia

characteristic: project name

text: Saxifraga oppositifolia

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Saxifaga oppositifolia

characteristic: specific host

text: Rhizosphere communities of the plant Saxifraga oppositifolia along a glacier chronosequence


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: rhizosphere

text: field

text: soil

text: Norway

characteristic: geographic location (longitude)

text: glacier

text: metagenome

characteristic: investigation type

text: Saxifraga oppositifolia

characteristic: organism

text: Saxifraga oppositifolia

text: Illumina MiSeq

text: soil

text: Saxifaga oppositifolia

characteristic: title


text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Homo sapiens

characteristic: sample description

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:UNIVERSITY OF VETERINARY MEDICINE VIENNA

characteristic: collection date

text: cattle

text: Rumen epithelium

characteristic: environment (biome)

text: Rumen epithelium

characteristic: environment (feature)

text: Rumen papillae

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Bos taurus

text: Inflacow

characteristic: project name

text: Bos taurus

text: Illumina MiSeq

characteristic: sequencing method

text: Bovine epithelial sample


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF VETERINARY MEDICINE VIENNA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: cattle

text: Rumen epithelium

text: Rumen epithelium

text: Rumen papillae

text: Austria

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: Bos taurus

characteristic: organism

text: Inflacow

text: Bos taurus

text: Illumina MiSeq

text: Bovine epithelial sample


characteristic: ENA-CHECKLIST

characteristic: External Id

text: LUDWIG INSTITUTE FOR CANCER RESEARCH

characteristic: INSDC center name

text: public

tag: Namespace:LUDWIG INSTITUTE FOR CANCER RESEARCH

text: house mouse

characteristic: common name

text: Mouse embryonic stem cells, wildtype, replicate 1

characteristic: description

text: Mus musculus

text: Mus musculus

characteristic: title


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, wildtype, replicate 2

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, wildtype, replicate 3

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, wildtype, replicate 4

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, wildtype, replicate 5

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P3_500_C8

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_200_A2

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_200_A4

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P1_200_E4

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_400_D7

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, unselected, P1_CTRL_A1

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, unselected, P1_CTRL_A2

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, unselected, P1_CTRL_A8

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_200_A5

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_400_A8

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_400_B7

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_400_D2

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_400_E3

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_400_E6

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_500_E7

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P2_500_F1

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P3_500_D3

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P3_500_E2

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_600_A2

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_600_B5

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_600_B7

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_800_C6

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_800_D6

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_800_E4

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_800_E5

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_800_F2

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_800_F3

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P4_800_F4

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P5_800_A4

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P5_800_A5

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P5_800_A8

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P5_800_C1

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, mutagenized, 6-TG resistant clone, P5_800_C2

text: Mus musculus

text: Mus musculus


text: LUDWIG INSTITUTE FOR CANCER RESEARCH

text: public

text: house mouse

text: Mouse embryonic stem cells, 6-TG resistant clone, P5_800_D5

text: Mus musculus

text: Mus musculus


Desert Soil

text: TUGRAZ

text: public

text: Desert Soil

characteristic: collection date

characteristic: depth

text: Desert Soil

characteristic: environment (biome)

text: Soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Egypt

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: Desert farming and microbial diversity

characteristic: project name

text: metagenome

text: 454 Pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Wb


Agricultural Soil

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: TUGRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Agricultural Soil

characteristic: Submitter Id

text: Agricultural Soil

text: Soil

text: Soil

text: Egypt

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: Desert farming and microbial diversity

text: metagenome

text: 454 Pyrosequencing

text: soil

text: Sb


characteristic: External Id

text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF LEICESTER

characteristic: collection date

text: 454GS-FLX sequencing of 16S rDNA amplicon library in sequential stable, exacerbation,Follow-up(2 weeks post-exacerbation) and Recovery(6 weekspost-exacerbation) samples in 30 subjects

characteristic: description

text: Lung

characteristic: environment (biome)

text: COPD

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Sputum

characteristic: host body product

text: COPD

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: ACGAGTGCGT

characteristic: multiplex identifiers

text: uncultured bacterium

characteristic: postexacerbationtreatment

text: Lung Microbiome in COPD

characteristic: sampletitle

text: uncultured bacterium

text: ex-smoker

characteristic: smoker

text: 454 sequencing of bacterial community in COPD sputum

characteristic: title

text: stable

characteristic: visittype


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lung

text: COPD

text: sputum

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sputum

text: COPD

text: male

text: human-associated

text: metagenome

characteristic: investigation type

text: ACGCTCGACA

text: uncultured bacterium

characteristic: organism

text: steroid

text: Lung Microbiome in COPD

characteristic: project name

text: uncultured bacterium

characteristic: sequencing method

text: ex-smoker

text: stable


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEICESTER

text: public

characteristic: description

text: Lung

characteristic: environment (biome)

text: COPD

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Sputum

characteristic: host body product

text: COPD

characteristic: host disease status

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: AGCACTGTAG

characteristic: multiplex identifiers

text: uncultured bacterium

characteristic: postexacerbationtreatment

text: Lung Microbiome in COPD

characteristic: sampletitle

text: uncultured bacterium

text: ex-smoker

characteristic: smoker

characteristic: title

text: stable

characteristic: visittype


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lung

text: COPD

text: sputum

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sputum

text: COPD

text: male

text: human-associated

text: metagenome

characteristic: investigation type

text: ATCAGACACG

text: uncultured bacterium

characteristic: organism

text: Lung Microbiome in COPD

characteristic: project name

text: uncultured bacterium

characteristic: sequencing method

text: smoker

text: stable


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEICESTER

text: public

characteristic: description

text: Lung

characteristic: environment (biome)

text: COPD

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Sputum

characteristic: host body product

text: COPD

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: ATATCGCGAG

characteristic: multiplex identifiers

text: uncultured bacterium

text: steroid

characteristic: postexacerbationtreatment

text: Lung Microbiome in COPD

characteristic: sampletitle

text: uncultured bacterium

text: ex-smoker

characteristic: smoker

characteristic: title

text: stable

characteristic: visittype


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lung

text: COPD

text: sputum

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sputum

text: COPD

text: male

text: human-associated

text: metagenome

characteristic: investigation type

text: CGTGTCTCTA

text: uncultured bacterium

characteristic: organism

text: Lung Microbiome in COPD

characteristic: project name

text: uncultured bacterium

characteristic: sequencing method

text: smoker

text: stable


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEICESTER

text: public

characteristic: description

text: Lung

characteristic: environment (biome)

text: COPD

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Sputum

characteristic: host body product

text: COPD

characteristic: host disease status

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: CTCGCGTGTC

characteristic: multiplex identifiers

text: uncultured bacterium

text: Antibiotic

characteristic: postexacerbationtreatment

text: Lung Microbiome in COPD

characteristic: sampletitle

text: uncultured bacterium

text: smoker

characteristic: smoker

characteristic: title

text: stable

characteristic: visittype


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lung

text: COPD

text: sputum

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sputum

text: COPD

text: male

text: human-associated

text: metagenome

characteristic: investigation type

text: TAGTATCAGC

text: uncultured bacterium

characteristic: organism

text: Lung Microbiome in COPD

characteristic: project name

text: uncultured bacterium

characteristic: sequencing method

text: ex-smoker

text: stable


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEICESTER

text: public

characteristic: description

text: Lung

characteristic: environment (biome)

text: COPD

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Sputum

characteristic: host body product

text: COPD

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: TCTCTATGCG

characteristic: multiplex identifiers

text: uncultured bacterium

characteristic: postexacerbationtreatment

text: Lung Microbiome in COPD

characteristic: sampletitle

text: uncultured bacterium

text: ex-smoker

characteristic: smoker

characteristic: title

text: stable

characteristic: visittype


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lung

text: COPD

text: sputum

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sputum

text: COPD

text: male

text: human-associated

text: metagenome

characteristic: investigation type

text: TGATACGTCT

text: uncultured bacterium

characteristic: organism

text: steroid

text: Lung Microbiome in COPD

characteristic: project name

text: uncultured bacterium

characteristic: sequencing method

text: smoker

text: stable


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEICESTER

text: public

characteristic: description

text: Lung

characteristic: environment (biome)

text: COPD

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Sputum

characteristic: host body product

text: COPD

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: TACTGAGCTA

characteristic: multiplex identifiers

text: uncultured bacterium

characteristic: postexacerbationtreatment

text: Lung Microbiome in COPD

characteristic: sampletitle

text: uncultured bacterium

text: smoker

characteristic: smoker

characteristic: title

text: stable

characteristic: visittype


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lung

text: COPD

text: sputum

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sputum

text: COPD

text: female

text: human-associated

text: metagenome

characteristic: investigation type

text: CATAGTAGTG

text: uncultured bacterium

characteristic: organism

text: Antibiotic

text: Lung Microbiome in COPD

characteristic: project name

text: uncultured bacterium

characteristic: sequencing method

text: ex-smoker

text: stable


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEICESTER

text: public

characteristic: description

text: Lung

characteristic: environment (biome)

text: COPD

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Sputum

characteristic: host body product

text: COPD

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: CGAGAGATAC

characteristic: multiplex identifiers

text: uncultured bacterium

characteristic: postexacerbationtreatment

text: Lung Microbiome in COPD

characteristic: sampletitle

text: uncultured bacterium

text: ex-smoker

characteristic: smoker

characteristic: title

text: stable

characteristic: visittype


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lung

text: COPD

text: sputum

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sputum

text: COPD

text: male

text: human-associated

text: metagenome

characteristic: investigation type

text: ATACGACGTA

text: uncultured bacterium

characteristic: organism

text: Antibiotic

text: Lung Microbiome in COPD

characteristic: project name

text: uncultured bacterium

characteristic: sequencing method

text: ex-smoker

text: stable


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEICESTER

text: public

characteristic: description

text: Lung

characteristic: environment (biome)

text: COPD

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Sputum

characteristic: host body product

text: COPD

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: TCACGTACTA

characteristic: multiplex identifiers

text: uncultured bacterium

text: Antibiotic

characteristic: postexacerbationtreatment

text: Lung Microbiome in COPD

characteristic: sampletitle

text: uncultured bacterium

text: ex-smoker

characteristic: smoker

characteristic: title

text: stable

characteristic: visittype


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lung

text: COPD

text: sputum

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sputum

text: COPD

text: male

text: human-associated

text: metagenome

characteristic: investigation type

text: CGTCTAGTAC

text: uncultured bacterium

characteristic: organism

text: Lung Microbiome in COPD

characteristic: project name

text: uncultured bacterium

characteristic: sequencing method

text: ex-smoker

text: stable


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEICESTER

text: public

characteristic: description

text: Lung

characteristic: environment (biome)

text: COPD

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Sputum

characteristic: host body product

text: COPD

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: TCTACGTAGC

characteristic: multiplex identifiers

text: uncultured bacterium

characteristic: postexacerbationtreatment

text: Lung Microbiome in COPD

characteristic: sampletitle

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