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text: Listeria monocytogenes

text: CLIP 2015/00090

text: Listeria monocytogenes strain CLIP 2015/00090


CLIP 2015/00091

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00091

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00091

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00091

text: Listeria monocytogenes strain CLIP 2015/00091


CLIP 2015/00092

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00092

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00092

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00092

text: Listeria monocytogenes strain CLIP 2015/00092


CLIP 2015/00093

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00093

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00093

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00093

text: Listeria monocytogenes strain CLIP 2015/00093


CLIP 2015/00094

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00094

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00094

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00094

text: Listeria monocytogenes strain CLIP 2015/00094


CLIP 2015/00095

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00095

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00095

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00095

text: Listeria monocytogenes strain CLIP 2015/00095


CLIP 2015/00096

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00096

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00096

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00096

text: Listeria monocytogenes strain CLIP 2015/00096


CLIP 2015/00097

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00097

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00097

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00097

text: Listeria monocytogenes strain CLIP 2015/00097


CLIP 2015/00098

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00098

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00098

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00098

text: Listeria monocytogenes strain CLIP 2015/00098


CLIP 2015/00099

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00099

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00099

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00099

text: Listeria monocytogenes strain CLIP 2015/00099


CLIP 2015/00100

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00100

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00100

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00100

text: Listeria monocytogenes strain CLIP 2015/00100


CLIP 2015/00101

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00101

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00101

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00101

text: Listeria monocytogenes strain CLIP 2015/00101


CLIP 2015/00102

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00102

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00102

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00102

text: Listeria monocytogenes strain CLIP 2015/00102


CLIP 2015/00104

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00104

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00104

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00104

text: Listeria monocytogenes strain CLIP 2015/00104


CLIP 2015/00105

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00105

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00105

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00105

text: Listeria monocytogenes strain CLIP 2015/00105


CLIP 2015/00106

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00106

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00106

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00106

text: Listeria monocytogenes strain CLIP 2015/00106


CLIP 2015/00107

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00107

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00107

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00107

text: Listeria monocytogenes strain CLIP 2015/00107


CLIP 2015/00108

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00108

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00108

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00108

text: Listeria monocytogenes strain CLIP 2015/00108


CLIP 2015/00110

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00110

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00110

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00110

text: Listeria monocytogenes strain CLIP 2015/00110


CLIP 2015/00112

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00112

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00112

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00112

text: Listeria monocytogenes strain CLIP 2015/00112


CLIP 2015/00113

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00113

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00113

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00113

text: Listeria monocytogenes strain CLIP 2015/00113


CLIP 2015/00116

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00116

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00116

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00116

text: Listeria monocytogenes strain CLIP 2015/00116


CLIP 2015/00117

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00117

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00117

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00117

text: Listeria monocytogenes strain CLIP 2015/00117


CLIP 2015/00119

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00119

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00119

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00119

text: Listeria monocytogenes strain CLIP 2015/00119


CLIP 2015/00120

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00120

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00120

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00120

text: Listeria monocytogenes strain CLIP 2015/00120


CLIP 2015/00121

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00121

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00121

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00121

text: Listeria monocytogenes strain CLIP 2015/00121


CLIP 2015/00134

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00134

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00134

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00134

text: Listeria monocytogenes strain CLIP 2015/00134


CLIP 2015/00137

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00137

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00137

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00137

text: Listeria monocytogenes strain CLIP 2015/00137


CLIP 2015/00138

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00138

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00138

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00138

text: Listeria monocytogenes strain CLIP 2015/00138


CLIP 2015/00141

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00141

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00141

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00141

text: Listeria monocytogenes strain CLIP 2015/00141


CLIP 2015/00189

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00189

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00189

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00189

text: Listeria monocytogenes strain CLIP 2015/00189


CLIP 2015/00192

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00192

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00192

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00192

text: Listeria monocytogenes strain CLIP 2015/00192


CLIP 2015/00193

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00193

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00193

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00193

text: Listeria monocytogenes strain CLIP 2015/00193


CLIP 2015/00207

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00207

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00207

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00207

text: Listeria monocytogenes strain CLIP 2015/00207


CLIP 2015/00208

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00208

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00208

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00208

text: Listeria monocytogenes strain CLIP 2015/00208


CLIP 2015/00252

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00252

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00252

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00252

text: Listeria monocytogenes strain CLIP 2015/00252


CLIP 2015/00260

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00260

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00260

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00260

text: Listeria monocytogenes strain CLIP 2015/00260


CLIP 2015/00262

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00262

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00262

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00262

text: Listeria monocytogenes strain CLIP 2015/00262


CLIP 2015/00263

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00263

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00263

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00263

text: Listeria monocytogenes strain CLIP 2015/00263


CLIP 2015/00274

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00274

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00274

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00274

text: Listeria monocytogenes strain CLIP 2015/00274


CLIP 2015/00276

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00276

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00276

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00276

text: Listeria monocytogenes strain CLIP 2015/00276


CLIP 2015/00307

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00307

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00307

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00307

text: Listeria monocytogenes strain CLIP 2015/00307


CLIP 2015/00335

text: INSTITUT PASTEUR

text: public

text: CLIP 2015/00335

text: Whole-genome sequencing of Listeria monocytogenes: CLIP 2015/00335

text: Listeria monocytogenes

text: Listeria monocytogenes

text: CLIP 2015/00335

text: Listeria monocytogenes strain CLIP 2015/00335


text: PHE

text: public

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: South East_1

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: West Midlands_1

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: South East_2

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: South East_3

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: North West_2

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: West Midlands_2

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: North West_1

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: West Midlands_3

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: North West_3

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: PHE

text: public

text: North West_4

text: OXA-48 producer

text: Escherichia coli

text: Escherichia coli


text: public

tag: Namespace:Institute for Molecular Bioscience, University of Queenland, Brisbane, QLD 4072, Australia

text: ArrayExpress

characteristic: broker name

text: HUVEC

characteristic: cell line

text: human umbilical vein endothelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: HUVECs were obtained from LONZA and grown according to suppliers recommendations. Cells were cultured in EBM2 media, supplemented with EGM2. Transfection was performed using Roche X-tremegene DNA transfection reagent in low (0.4%) FBS Following IP, DNA amplification was performed using TruSeq ChIPseq kit (Illumina, IP-202-1012). The PCR product was purified using AMPure beads. The library was quantified using the KAPA library quantification kit for Illumina sequencing platforms (KK4824)

text: transfected with cMyc

characteristic: genotype

text: EGM2 supplemented media + vascular endothelial growth factor A

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Molecular Bioscience, University of Queenland, Brisbane, QLD 4072, Australia

text: public

text: ArrayExpress

text: HUVEC

text: human umbilical vein endothelial cell

text: human

text: transfected with cMyc

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: HUVEC

text: human umbilical vein endothelial cell

text: human

text: transfected with Sox18-cMyc

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF LEUVEN

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF LEUVEN

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mouse


text: IPK-Gatersleben

text: public

text: Luzula elegans

text: Luzula elegans

text: pollen

characteristic: tissue type

characteristic: title


E-MTAB-4468:Carbon limitation 1

text: DOE Joint Genome Institute

text: public

text: E-MTAB-4468:Carbon limitation 1

tag: Namespace:DOE Joint Genome Institute

unit: molar

characteristic: ammonium concentration

text: ArrayExpress

characteristic: broker name

text: Protocols: Samples of steady-state R. pomeroyi DSS-3 cells (45 l) were collected from chemostats after five volume exchanges. An RNA stabilization solution (95% ethanol 5% phenol) was added to constitute 10% of the total volume and cells were centrifuged. Pellets were stored frozen at -80oC until processing. R. pomeroyi DSS-3 cells used for transcriptome sequencing and RT-qPCR analysis were grown in carbon- and nitrogen-limited chemostats. Three replicates were run in each condition (carbon limitation, 1 mmol l-1 glucose and 2.8 mmol l-1 NH4Cl; nitrogen limitation, 4.5 mmol l-1 glucose and 0.26 mmol l-1 NH4Cl). A continuous culturing approach was used in order to study growth under chronic nutrient limitation rather than the physiologically distinct process of nutrient starvation and shift to stationary phase. Additional details of the chemostat design are found in Chan et al. (2012). For RNA extraction, pellets were thawed and extracted using TriReagent (Molecular Research Center, Cincinnati, OH, USA). Purified RNA was depleted of rRNA with the MicrobeExpress Kit (Ambion/Applied Biosystems, Austin, TX) and the mRNA-enriched RNA was subsequently amplified using a strand-specific protocol (MessageAmpII-Bacteria Kit; Ambion/Applied Biosystems). Using the SOLiD Whole Transcriptome Analysis Kit (Applied Biosystems), 5 g of amplified mRNA from six samples (triplicates from both the C- and N-limitation treatments) were fragmented with RNaseIII and purified and concentrated with the RiboMinus kit (Invitogen). mRNA was examined for fragment length (Agilent 2100 Bioanalyzer) to ensure that the majority were in the 100-200 nt range. All procedures for adaptor ligation and cDNA synthesis were conducted according to the SOLiD protocol. Resultant cDNA was purified and concentrated using the MinElute PCR Purification Kit (Invitrogen), heat-denatured at 95oC, run on a Novex 6% TBE-Urea Gel (Invitrogen) under denaturing conditions with a 50 bp DNA ladder, and stained with SYBR Gold nucleic acid stain. Gel bands containing 100-200 nt cDNA (insert size 50-150 nt) were used for PCR amplification of cDNA using AmpliTaq DNA Polymerase. PCR was carried out with a 5 SOLiD primer and a barcoded 3 primer (using a unique barcode for each sample) for 16 cycles. Amplified cDNA was purified and concentrated using PureLink PCR Micro Kit (Invitrogen).

characteristic: description

characteristic: glucose concentration

text: carbon limitation

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Carbon limitation 1


E-MTAB-4468:Carbon limitation 2

characteristic: ENA-CHECKLIST

text: DOE Joint Genome Institute

text: public

text: E-MTAB-4468:Carbon limitation 2

text: ArrayExpress

text: carbon limitation

characteristic: growth condition

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Carbon limitation 2


E-MTAB-4468:Carbon limitation 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DOE Joint Genome Institute

text: public

text: E-MTAB-4468:Carbon limitation 3

text: ArrayExpress

text: carbon limitation

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Carbon limitation 3


E-MTAB-4468:Nitrogen limitation 1

characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

text: public

text: E-MTAB-4468:Nitrogen limitation 1

text: ArrayExpress

text: nitrogen limitation

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Nitrogen limitation 1


E-MTAB-4468:Nitrogen limitation 2

text: DOE Joint Genome Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4468:Nitrogen limitation 2

text: ArrayExpress

text: nitrogen limitation

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Nitrogen limitation 2


E-MTAB-4468:Nitrogen limitation 3

text: DOE Joint Genome Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4468:Nitrogen limitation 3

text: ArrayExpress

text: nitrogen limitation

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Ruegeria pomeroyi DSS-3

text: Nitrogen limitation 3


E-MTAB-4459:Sample 1

text: public

text: E-MTAB-4459:Sample 1

tag: Namespace:Department of Plant Sciences (IPV), Norwegian University of Life Sciences (NMBU).

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: leaf samples collected during incubation non-inoculated stages leaf samples collected during incubation inoculated conditions RNA was extracted using the Pure Link RNA Mini Kit (Life technologies, USA) and Plant RNA Isolation Aid (Life technologies, USA). On-Column DNAse kit was used to remove the DNA contamination TruSeq Stranded Total RNA Library Prep Kit was used for library preparation for each sample

text: Fagerlin-Resistant

characteristic: genotype

text: non-incubated and non-inoculated plants (NI-NI)

text: Lolium perenne

characteristic: organism

text: Lolium perenne

text: leaf

characteristic: organism part

text: Lolium perenne

text: Sample 1


E-MTAB-4459:Sample 10

text: Department of Plant Sciences (IPV), Norwegian University of Life Sciences (NMBU).

text: public

text: E-MTAB-4459:Sample 10

text: ArrayExpress

characteristic: broker name

text: Protocols: leaf smaples collected before placing in incubation leaf samples collected during incubation inoculated conditions RNA was extracted using the Pure Link RNA Mini Kit (Life technologies, USA) and Plant RNA Isolation Aid (Life technologies, USA). On-Column DNAse kit was used to remove the DNA contamination TruSeq Stranded Total RNA Library Prep Kit was used for library preparation for each sample

text: Fagerlin-Susceptible

text: incubated and non-inoculated plants (I-NI) after four days of incubation

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 10

characteristic: title


E-MTAB-4459:Sample 11

text: public

text: E-MTAB-4459:Sample 11

text: ArrayExpress

text: Protocols: leaf smaples collected before placing in incubation leaf samples collected during incubation non-inoculated stages RNA was extracted using the Pure Link RNA Mini Kit (Life technologies, USA) and Plant RNA Isolation Aid (Life technologies, USA). On-Column DNAse kit was used to remove the DNA contamination TruSeq Stranded Total RNA Library Prep Kit was used for library preparation for each sample

characteristic: description

text: Fagerlin-Susceptible

text: incubated and inoculated plants (I-I) after four days of incubation

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 11


E-MTAB-4459:Sample 12

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4459:Sample 12

text: ArrayExpress

text: Fagerlin-Susceptible

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 12


E-MTAB-4459:Sample 2

text: public

text: E-MTAB-4459:Sample 2

text: ArrayExpress

text: Fagerlin-Resistant

characteristic: growth condition

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 2


E-MTAB-4459:Sample 3

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4459:Sample 3

text: ArrayExpress

text: Fagerlin-Resistant

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 3


E-MTAB-4459:Sample 4

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4459:Sample 4

text: ArrayExpress

text: Fagerlin-Resistant

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 4


E-MTAB-4459:Sample 5

characteristic: External Id

text: public

text: E-MTAB-4459:Sample 5

text: ArrayExpress

text: Fagerlin-Resistant

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 5


E-MTAB-4459:Sample 6

characteristic: INSDC center name

text: public

text: E-MTAB-4459:Sample 6

text: ArrayExpress

text: Fagerlin-Resistant

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 6


E-MTAB-4459:Sample 7

characteristic: INSDC first public

text: public

text: E-MTAB-4459:Sample 7

text: ArrayExpress

text: Fagerlin-Susceptible

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 7


E-MTAB-4459:Sample 8

characteristic: INSDC last update

text: public

text: E-MTAB-4459:Sample 8

text: ArrayExpress

text: Fagerlin-Susceptible

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 8


E-MTAB-4459:Sample 9

text: public

characteristic: INSDC status

text: E-MTAB-4459:Sample 9

text: ArrayExpress

text: Fagerlin-Susceptible

text: Lolium perenne

text: Lolium perenne

text: leaf

text: Lolium perenne

text: Sample 9


text: Instituto Gulbenkian de Ciencia

text: public

characteristic: SRA accession

tag: Namespace:Instituto Gulbenkian de Ciencia

text: ArrayExpress

text: NPC

characteristic: cell line

text: house mouse

characteristic: common name

text: Protocols: NS5 cells were cultured as previously described (Conti et al. 2005), using laminin as a media supplement (20ug/mL), and plated at a density of 28,000/cm2 NS5 cells were fixed sequentially with di(N-succimidyl) glutarate and 1% formaldehyde in phosphate buffered saline and then lysed, sonicated and immunoprecipitated, as previously described (Castro et al., 2011), with rabbit anti-RBPJ DNA libraries were prepared from 10ng of immunoprecipitated DNA according to the standard Illumina ChIP-seq protocol.

text: media

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: Salmonella enterica subsp. enterica serovar Paratyphi B

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

characteristic: organism

characteristic: strain


E-MTAB-4488:Sample 1

characteristic: ENA-CHECKLIST

text: University of Kent

text: public

text: E-MTAB-4488:Sample 1

tag: Namespace:University of Kent

text: ArrayExpress

characteristic: broker name

text: Protocols: Cell harvesting Total yeast RNA standard extraction EMBL CORE FACILITY

characteristic: description

text: wild type genotype

characteristic: genotype

text: 30 C

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Sample 1

characteristic: title


E-MTAB-4488:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Kent

characteristic: INSDC center name

text: public

text: E-MTAB-4488:Sample 2

text: ArrayExpress

text: sir2/ knockout

text: 30 C

characteristic: growth condition

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: Sample 2


text: Embryoid Body Cell

characteristic: ArrayExpress-CellType

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


LMG 29305

text: LM-UGent

text: public

text: LMG 29305

characteristic: Submitter Id

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: LMG 29305

characteristic: isolate

text: Rhizosphere soil

characteristic: isolation source

text: Burkholderia multivorans

characteristic: organism

text: Burkholderia multivorans

text: B. multivorans LMG 29305


LMG 29313

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LM-UGent

text: public

text: LMG 29313

text: Czech Republic

text: LMG 29313

text: cystic fibrosis

text: Burkholderia multivorans

text: Burkholderia multivorans

text: B. multivorans LMG 29313

characteristic: title


LMG 29309

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LM-UGent

characteristic: INSDC center name

text: public

text: LMG 29309

text: Belgium

text: LMG 29309

text: Soil

text: Burkholderia multivorans

text: Burkholderia multivorans

text: B. multivorans LMG 29309


LMG 29312

text: LM-UGent

text: public

text: LMG 29312

text: Canada

text: LMG 29312

text: cystic fibrosis

text: Burkholderia multivorans

text: Burkholderia multivorans

text: B. multivorans LMG 29312


LMG 29306

text: LM-UGent

text: public

text: LMG 29306

text: United Kingdom

text: LMG 29306

text: Rhizosphere soil

text: Burkholderia multivorans

text: Burkholderia multivorans

text: B. multivorans LMG 29306


LMG 29311

text: LM-UGent

text: public

text: LMG 29311

text: Canada

text: LMG 29311

text: cystic fibrosis

text: Burkholderia multivorans

text: Burkholderia multivorans

text: B. multivorans LMG 29311


LMG 29308

text: LM-UGent

text: public

text: LMG 29308

text: Belgium

text: LMG 29308

text: Pond water

text: Burkholderia multivorans

text: Burkholderia multivorans

text: B. multivorans LMG 29308


LMG 29310

text: LM-UGent

text: public

text: LMG 29310

text: Germany

text: LMG 29310

text: cystic fibrosis

text: Burkholderia multivorans

text: Burkholderia multivorans

text: B. multivorans LMG 29310


SFF

text: public

text: SFF

tag: Namespace:CNRS - CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQU

text: march 2011

text: Brazil

text: Caico

characteristic: geographic location (region and locality)

text: Triatoma aff. brasiliensis MDB-2014

text: Triatoma aff. brasiliensis MDB-2014

text: chemosensory organs

characteristic: tissue lib

text: Chemosensory RNAseq reads illumina


characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:EMBL-EBI Wellcome Trust Sanger Institute

text: ArrayExpress

characteristic: broker name

text: Dendritic Cell CD8a-

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Single-cell suspensions were prepared by homogenising spleens through 100 m strainers and lysing erythrocytes using RBC lysis buffer (eBioscience). Fc receptors were blocked using anti- CD16/32 antibody (BD Pharmigen or in-house). T cells were stained with the following antibodies (Biolegend): CD4-APC (GK1.5), TCR-APC-Cy7 (H57-597), CD45.1-FITC (A20), V2-FITC (B20.1), V12-eFluor710 (MR11-1) (eBioscience), CD69-PE (H1.2F3), PD-1- APCCy7 (29F.1A12), CXCR5-Biotinylated (2G8) (BD Pharmigen), Streptavidin-PeCy7, CD183 (CXCR3)- PE (CXCR3-173), IFN-BV421 (XMG1.2), Bcl6-PercpCy5.5 (K112-91) (BD Pharmigen), Ki-67-PE (16A8) and Tbet-eFluor660 (4-B10) (eBioscience). Dendritic cells and monocytes were stained with the following antibodies (Biolegend): CD11c-Percp-Cy5.5 (N418), MHCII (1-A/1/E)-APC (M5/114-15.3), B220-AlexaFluor700 (RA3-6B2), TCR-APC-Cy7 (H57-597), Ly6c-FITC (HKJ.4), CD11b-BV421 (M1/70), Ly6g-PE (IA8), CD8-PE-Cy7 (53-6.7) and CXCL9-PE (MIG-2F5.5). Intracellular staining for IFN, Tbet, Bcl6, Ki67 or CXCL9 was performed with the eBioscience FoxP3 intracellular kit. Intracellular staining for p-S6 was performing using a monoclonal antibody (D57.2.2E), or respectively isotype control (Cell 22 Signaling Technology) with Cell Signaling Buffer Set A (Miltenyi Biotech) according to manufacturer's protocol. Cells were sorted using a MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) instrument. Activated PbTII T cells were sorted as CD4+TCR+ and CD69+ and/or divided at least once as measured using the CellTrace Violet proliferation dye. Dendritic cells were sorted as CD11chiMHCIIhiTCR-B220-. Naive dendritic cells were further sorted as CD8+CD11b- or CD8-CD11b+. Inflammatory monocytes were identified as CD11bhiLy6ChiLy6GloTCR-B220-. Plasmodium chabaudi chabaudi AS parasites were used after one in vivo passage in WT C67Bl/6 mice. Mice were infected with 105 pRBCs i.v. and blood parasitemia was monitored by Giemsa-stained thin blood smears obtained from tail bleeds. Single cell capture and processing was performed using the Fluidigm C1 system as in (40). The cell suspension obtained from sorting was loaded on to the Fluidigm C1 platform using small sized capture chips (5-10m cells). 1 l of a 1:4000 dilution of External RNA Control Consortium (ERCC) spike-ins (Ambion, Life Technologies) was included in the lysis buffer. Reverse transcription and preamplification of cDNA were performed using the SMARTer Ultra Low RNA kit (Clontech). The sequencing libraries were prepared using Nextera XT DNA Sample Preparation Kit (Illumina), according to the protocol supplied by Fluidigm (PN 100-5950 B1). Libraries from up to 96 single cells were pooled and purified using AMPure XP beads (Beckman Coulter).

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

unit: day

characteristic: time


text: EMBL-EBI Wellcome Trust Sanger Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Dendritic Cell CD8a-

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: Monocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: Dendritic Cell CD8a+

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: INSDC center name

text: public

text: ArrayExpress

text: CD4+ T cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: INSDC first public

text: public

text: ArrayExpress

text: CD4+ T cell

text: house mouse

text: Plasmodium chabaudi chabaudi AS

characteristic: infection

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: Monocyte

text: house mouse

text: Plasmodium chabaudi chabaudi AS

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

text: ArrayExpress

text: Dendritic Cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Plasmodium chabaudi chabaudi AS

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UNIVERSITY OF LEUVEN

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: mouse embryo


text: UCSDMI

text: public

text: 11/20/14 11:00

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: organic material

characteristic: env matter

text: microbial mat/biofilm

characteristic: env package

text: Australia:Queensland:Brisbane

characteristic: geo loc name

text: pig

characteristic: host common name

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host taxon id

text: MiMARKS survey

characteristic: investigation type

characteristic: latitude

characteristic: longitude

text: pig gut metagenome

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

characteristic: public

text: completed

text: faecal inoculum

characteristic: sample type

text: pig gut metagenome

text: True

characteristic: submitted to INSDC

characteristic: timepoint

text: An in vitro fermentation study of dietary substrates of varying origins, with a comparison of previous in vivo studies.

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 11/18/14 17:00

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: organic material

text: microbial mat/biofilm

text: Australia:Queensland:Brisbane

text: pig

text: Sus scrofa domesticus

text: MiMARKS survey

text: pig gut metagenome

characteristic: organism

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

text: completed

text: faecal inoculum

text: pig gut metagenome

text: True

characteristic: title


text: UCSDMI

text: public

text: 11/18/14 20:00

text: True

text: urban biome

text: research facility

text: organic material

characteristic: env matter

text: microbial mat/biofilm

characteristic: env package

text: Australia:Queensland:Brisbane

characteristic: geo loc name

text: pig

characteristic: host common name

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host taxon id

text: MiMARKS survey

characteristic: investigation type

characteristic: latitude

characteristic: longitude

text: pig gut metagenome

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

characteristic: public

text: completed

text: faecal inoculum

characteristic: sample type

text: pig gut metagenome

text: True

characteristic: submitted to INSDC

characteristic: timepoint

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 11/18/14 20:00

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: organic material

text: microbial mat/biofilm

text: Australia:Queensland:Brisbane

text: pig

text: Sus scrofa domesticus

text: MiMARKS survey

text: pig gut metagenome

characteristic: organism

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

text: completed

text: faecal inoculum

text: pig gut metagenome

text: True

characteristic: title


text: UCSDMI

text: public

text: 11/18/14 23:00

text: True

text: urban biome

text: research facility

text: organic material

characteristic: env matter

text: microbial mat/biofilm

characteristic: env package

text: Australia:Queensland:Brisbane

characteristic: geo loc name

text: pig

characteristic: host common name

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host taxon id

text: MiMARKS survey

characteristic: investigation type

characteristic: latitude

characteristic: longitude

text: pig gut metagenome

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

characteristic: public

text: completed

text: faecal inoculum

characteristic: sample type

text: pig gut metagenome

text: True

characteristic: submitted to INSDC

characteristic: timepoint

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 11/20/14 11:00

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: organic material

text: microbial mat/biofilm

text: Australia:Queensland:Brisbane

text: pig

text: Sus scrofa domesticus

text: MiMARKS survey

text: pig gut metagenome

characteristic: organism

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

text: completed

text: faecal inoculum

text: pig gut metagenome

text: True

characteristic: title


text: UCSDMI

text: public

text: 11/18/14 23:00

text: True

text: urban biome

text: research facility

text: organic material

characteristic: env matter

text: microbial mat/biofilm

characteristic: env package

text: Australia:Queensland:Brisbane

characteristic: geo loc name

text: pig

characteristic: host common name

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host taxon id

text: MiMARKS survey

characteristic: investigation type

characteristic: latitude

characteristic: longitude

text: pig gut metagenome

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

characteristic: public

text: completed

text: faecal inoculum

characteristic: sample type

text: pig gut metagenome

text: True

characteristic: submitted to INSDC

characteristic: timepoint

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 11/19/14 11:00

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: organic material

text: microbial mat/biofilm

text: Australia:Queensland:Brisbane

text: pig

text: Sus scrofa domesticus

text: MiMARKS survey

text: pig gut metagenome

characteristic: organism

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

text: completed

text: faecal inoculum

text: pig gut metagenome

text: True

characteristic: title


text: UCSDMI

text: public

text: 11/19/14 11:00

text: True

text: urban biome

text: research facility

text: organic material

characteristic: env matter

text: microbial mat/biofilm

characteristic: env package

text: Australia:Queensland:Brisbane

characteristic: geo loc name

text: pig

characteristic: host common name

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host taxon id

text: MiMARKS survey

characteristic: investigation type

characteristic: latitude

characteristic: longitude

text: pig gut metagenome

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

characteristic: public

text: completed

text: faecal inoculum

characteristic: sample type

text: pig gut metagenome

text: True

characteristic: submitted to INSDC

characteristic: timepoint

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 11/18/14 11:00

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: organic material

text: microbial mat/biofilm

text: Australia:Queensland:Brisbane

text: pig

text: Sus scrofa domesticus

text: MiMARKS survey

text: pig gut metagenome

characteristic: organism

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

text: completed

text: faecal inoculum

text: pig gut metagenome

text: True

characteristic: title


text: UCSDMI

text: public

text: 11/22/14 11:00

text: True

text: urban biome

text: research facility

text: organic material

characteristic: env matter

text: microbial mat/biofilm

characteristic: env package

text: Australia:Queensland:Brisbane

characteristic: geo loc name

text: pig

characteristic: host common name

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host taxon id

text: MiMARKS survey

characteristic: investigation type

characteristic: latitude

characteristic: longitude

text: pig gut metagenome

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

characteristic: public

text: completed

text: faecal inoculum

characteristic: sample type

text: pig gut metagenome

text: True

characteristic: submitted to INSDC

characteristic: timepoint

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 4/29/14 8:00

characteristic: description

text: True

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: feces

text: host-associated

text: Australia:Queensland:Brisbane

text: pig

text: Sus scrofa domesticus

text: MiMARKS survey

text: pig gut metagenome

characteristic: organism

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

text: completed

text: feces

text: pig gut metagenome

text: True

text: 454-amplicon pyrosequencing of porcine faecal microbiota over a 16 day period reveal that complex diets, specifically containing dietary fibre, promote a more diverse faecal bacterial community.

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 5/8/14 8:00

text: True

text: dense settlement biome

text: animal-associated habitat

text: feces

characteristic: env matter

text: host-associated

characteristic: env package

text: Australia:Queensland:Brisbane

characteristic: geo loc name

text: pig

characteristic: host common name

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: MiMARKS survey

characteristic: investigation type

characteristic: latitude

characteristic: longitude

text: pig gut metagenome

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

characteristic: public

text: completed

text: feces

characteristic: sample type

text: pig gut metagenome

text: True

characteristic: submitted to INSDC


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 5/1/14 8:00

characteristic: description

text: True

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: feces

text: host-associated

text: Australia:Queensland:Brisbane

text: pig

text: Sus scrofa domesticus

text: MiMARKS survey

text: pig gut metagenome

characteristic: organism

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

text: completed

text: feces

text: pig gut metagenome

text: True

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 5/4/14 8:00

text: True

text: dense settlement biome

text: animal-associated habitat

text: feces

characteristic: env matter

text: host-associated

characteristic: env package

text: Australia:Queensland:Brisbane

characteristic: geo loc name

text: pig

characteristic: host common name

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: MiMARKS survey

characteristic: investigation type

characteristic: latitude

characteristic: longitude

text: pig gut metagenome

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

characteristic: public

text: completed

text: feces

characteristic: sample type

text: pig gut metagenome

text: True

characteristic: submitted to INSDC


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 5/6/14 8:00

characteristic: description

text: True

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: feces

text: host-associated

text: Australia:Queensland:Brisbane

text: pig

text: Sus scrofa domesticus

text: MiMARKS survey

text: pig gut metagenome

characteristic: organism

text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

text: completed

text: feces

text: pig gut metagenome

text: True

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 5/1/14 8:00

text: True

text: dense settlement biome

text: animal-associated habitat

text: feces

characteristic: env matter

text: host-associated

characteristic: env package

text: Australia:Queensland:Brisbane

characteristic: geo loc name

text: pig

characteristic: host common name

text: Sus scrofa domesticus

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text: pig gut metagenome

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text: True

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text: UQ St Lucia Bldg#83 Rm C203 Freezer

text: False

text: True

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text: True

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text: True

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text: False

text: True

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text: completed

text: feces

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text: pig gut metagenome

text: True

characteristic: submitted to INSDC


characteristic: External Id

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF TECHNOLOGY, SYDNEY

characteristic: Submitter Id

characteristic: collection date

text: aquatic

characteristic: environment (biome)

text: coastal seawater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Tasman Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 42.5967° S

characteristic: geographic location (latitude)

text: 148.2333° E

characteristic: geographic location (longitude)

text: metagenome

text: marine metagenome

characteristic: organism

text: Bacterioplankton

characteristic: project name

text: marine metagenome

text: pyrosequencing

characteristic: sequencing method

text: Bacterial 16 rRNA genes

characteristic: title

text: water

characteristic: water environmental package


text: Chlamydia pecorum

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Chlamydia pecorum

characteristic: common name

text: Chlamydia pecorum

text: Chlamydia pecorum

characteristic: strain


text: CIGENE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Atlantic cod

text: 104 cod from the National cod breeding program were selected for sequencing comprising 50 fish of NEAC origin, 11 fish of NCC origin and 43 fish offspring of NEAC x NCC crosses. The sequenced fish belonged to year classes 2005 (P) and 2006 (F1) and represented the second generation of cod produced in captivity.

characteristic: description

text: Gadus morhua

text: Gadus morhua

text: Illumina HiSeq 2000 PE WGS of 104 Atlantic cod samples


text: KTH, SCIENCE FOR LIFE LABORATORY

text: public

tag: Namespace:KTH, SCIENCE FOR LIFE LABORATORY

characteristic: collection date

text: Shotgun metagenomics of rumen from rumen of moose sampled in Växsjö

text: Moose rumen

characteristic: environment (biome)

text: Moose rumen

characteristic: environment (feature)

text: Moose rumen

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: bioreactor metagenome

characteristic: organism

text: Shotgun metagenomics of Moose rumen

characteristic: project name

text: bioreactor metagenome

text: Metagenome

characteristic: sequencing method

text: Moose rumen location Växsjö

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS - CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: March 2011

text: Domiciliary

characteristic: ecotype

text: Brazil

text: Caico

characteristic: geographic location (region and locality)

characteristic: number of individuals

text: Triatoma aff. brasiliensis MDB-2014

text: Triatoma aff. brasiliensis MDB-2014

text: Female

characteristic: sex

text: Chemosensory organs : antenna and rostrum

characteristic: tissue lib

text: Tbra RNAseq


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: March 2011

characteristic: collection date

text: Domiciliary

text: Brazil

characteristic: geographic location (country and/or sea)

text: Caico

text: Triatoma aff. brasiliensis MDB-2014

characteristic: organism

text: Triatoma aff. brasiliensis MDB-2014

text: Male

text: Tbra RNAseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: March 2011

text: Peridomiciliary

text: Brazil

text: Caico

text: Triatoma aff. brasiliensis MDB-2014

text: Triatoma aff. brasiliensis MDB-2014

text: Female

text: Tbra RNAseq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: March 2011

text: Peridomiciliary

text: Brazil

text: Caico

text: Triatoma aff. brasiliensis MDB-2014

text: Triatoma aff. brasiliensis MDB-2014

text: Male

text: Tbra RNAseq


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: March 2011

text: Sylvatic

text: Brazil

text: Caico

text: Triatoma aff. brasiliensis MDB-2014

text: Triatoma aff. brasiliensis MDB-2014

text: Female

text: Tbra RNAseq


text: public

text: March 2011

text: Sylvatic

characteristic: ecotype

text: Brazil

text: Caico

characteristic: geographic location (region and locality)

characteristic: number of individuals

text: Triatoma aff. brasiliensis MDB-2014

text: Triatoma aff. brasiliensis MDB-2014

text: Male

text: Tbra RNAseq


SCtrl

text: public

characteristic: SRA accession

text: SCtrl

tag: Namespace:IBET - INSTITUTO DE BIOLOGIA EXPERIMENTAL E TECNOLOGICA

text: Eucalyptus globulus subsp. globulus

text: Eucalyptus globulus subsp. globulus

text: SCtrl

characteristic: tissue lib

text: developing xylem

characteristic: tissue type


text: IBET - INSTITUTO DE BIOLOGIA EXPERIMENTAL E TECNOLOGICA

text: public

characteristic: Submitter Id

text: Eucalyptus globulus subsp. globulus

text: Eucalyptus globulus subsp. globulus

text: developing xylem


text: KTH, SCIENCE FOR LIFE LABORATORY

text: public

characteristic: collection date

text: Shotgun metagenomics of moose rumen sampled in Öland

characteristic: description

text: Moose rumen

characteristic: environment (biome)

text: Moose rumen

characteristic: environment (feature)

text: Moose rumen

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Öland

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: bioreactor metagenome

characteristic: organism

characteristic: project name

text: bioreactor metagenome

text: Metagenome

characteristic: sequencing method

text: Shotgun metagenomics of moose rumen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: march 2011

text: Brazil

text: Caico

characteristic: geographic location (region and locality)

characteristic: number of individuals pooled

text: Triatoma aff. brasiliensis MDB-2014

text: Triatoma aff. brasiliensis MDB-2014

text: chemosensory organs : antenna and rostrum

text: RNAseq 454

characteristic: title