text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-46-1


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NCGR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: rice

characteristic: common name

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: F2 line HRF13-46-2

characteristic: title

type: has member


text: NCGR

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text: F2 line HRF13-46-3


text: NCGR

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text: NCGR

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text: NCGR

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text: NCGR

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text: NCGR

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text: NCGR

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text: NCGR

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text: NCGR

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text: F2 line HRF13-50-1


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text: F2 line HRF13-50-2


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text: F2 line HRF13-50-3


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text: F2 line HRF13-51-1


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text: F2 line HRF13-51-2


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text: F2 line HRF13-52-1


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text: F2 line HRF13-52-2


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text: F2 line HRF13-52-4


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text: NCGR

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text: F2 line HRF13-53-1


text: NCGR

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text: F2 line HRF13-53-2


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text: F2 line HRF13-54-1


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text: F2 line HRF13-54-3


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text: F2 line HRF13-55-1


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text: F2 line HRF13-55-2


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text: F2 line HRF13-55-3


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text: F2 line HRF13-55-4


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text: F2 line HRF13-55-5


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text: NCGR

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text: F2 line HRF13-56-2


text: NCGR

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text: F2 line HRF13-56-3


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text: F2 line HRF13-56-4


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text: NCGR

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text: F2 line HRF13-57-1


text: NCGR

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text: Oryza sativa

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text: F2 line HRF13-57-2


text: NCGR

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text: F2 line HRF13-58-1


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text: F2 line HRF13-58-2


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text: F2 line HRF13-59-1


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text: F2 line HRF13-60-1


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text: F2 line HRF13-60-2


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text: F2 line HRF13-60-3


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text: F2 line HRF13-60-4


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text: Oryza sativa

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text: F2 line HRF13-61-1


text: NCGR

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text: Oryza sativa

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text: F2 line HRF13-61-2


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text: F2 line HRF13-61-4


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text: Oryza sativa

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text: F2 line HRF13-6-1


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text: Oryza sativa

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text: F2 line HRF13-62-1


text: NCGR

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text: Oryza sativa

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text: F2 line HRF13-62-2


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text: Oryza sativa

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text: F2 line HRF13-62-3


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text: Oryza sativa

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text: F2 line HRF13-62-4


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text: Oryza sativa

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text: F2 line HRF13-63-1


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text: F2 line HRF13-76-3


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text: public

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text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-76-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-76-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-77-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-77-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-77-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-77-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-77-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-78-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-78-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-78-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-78-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-78-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-79-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-79-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-79-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-79-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-79-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-80-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-80-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-80-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-80-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-80-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-81-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-81-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-81-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-81-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-81-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-8-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-82-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-82-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-82-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-82-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-82-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-8-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-83-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-83-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-83-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-83-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-83-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-8-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-84-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-84-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-84-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-84-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-84-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-8-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-85-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-85-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-85-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-85-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-85-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-8-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-86-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-86-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-86-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-86-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-86-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-87-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-87-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-87-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-87-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-87-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-88-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-88-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-88-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-88-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-89-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-89-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-89-3


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-89-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-89-5


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-9-1


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-9-2


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-9-4


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: F2 line HRF13-9-5


text: IAPAR

text: public

text: coffee

text: Coffea arabica

text: Coffea arabica


text: LSHTM

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Sequencing reliability Mtb


E-MTAB-5132:Sample 1

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 1

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Seedlings were harvested 14 day A. thaliana Columbia-0 background seeds were sown aseptically in MS10 plates and are then stratified for 2 days before they are transferred to growth room. Growth room set up is long days (16h light/8h dark), temperature 21deg C which gives 23deg C on the shelf when lights are on. Total RNA extracted with the RNAeasy kit from Nimblegen. ERCC spike-ins were added to the total RNA at a 1:100 dilution and the resulting total RNA + spike-in mixture was stored at -80°C in advance of library preparation. Libraries were prepared using Illumina Tru-seq ribo-minus plant strand-specific protocol including barcoding.

characteristic: description

text: seedling

characteristic: developmental stage

characteristic: ecotype

text: total RNA

characteristic: fraction

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Helicos DRS seqencing (no cDNA conversion)

characteristic: protocol

text: Arabidopsis thaliana

text: Sample 1


E-MTAB-5132:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DUNDEE

characteristic: INSDC center name

text: public

text: E-MTAB-5132:Sample 2

text: ArrayExpress

text: thale cress

text: seedling

text: total RNA

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 2


E-MTAB-5132:Sample 3

text: DUNDEE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5132:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: seedling

text: total RNA

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 3


E-MTAB-5132:Sample 4

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: seedling

text: total RNA

text: gene knock down

characteristic: genetic modification

text: xrn3-8 mutant

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 4

characteristic: title


E-MTAB-5132:Sample 5

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 5

text: ArrayExpress

text: thale cress

characteristic: description

text: seedling

characteristic: developmental stage

characteristic: ecotype

text: total RNA

characteristic: fraction

text: gene knock down

text: xrn3-8 mutant

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

characteristic: protocol

text: Arabidopsis thaliana

text: Sample 5


E-MTAB-5132:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DUNDEE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5132:Sample 6

text: ArrayExpress

text: thale cress

text: seedling

text: total RNA

text: gene knock down

text: xrn3-8 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 6


E-MTAB-5132:Sample 7

text: DUNDEE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5132:Sample 7

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: seedling

text: total RNA

text: gene knock down

text: xrn3-8 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 7


E-MTAB-5132:Sample 14

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 14

text: ArrayExpress

text: thale cress

characteristic: common name

text: Protocols: Seedlings were collected after 14 days of growth. Seeds were surface-sterilized, stratified and grown on Murashige and Skoog (MS) medium supplemented with 1% (w/v) sucrose and 0.3% phytagel, under a 16 h light/8 h dark photoperiod. Total RNA was extracted using Trizol reagent (Sigma). Small RNA Sample Prep Kit v1.5, including PAGE selection of small RNAs (18-30 nt).

characteristic: description

text: seedling

characteristic: developmental stage

text: small RNAs

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Illumina 50bp single-end sequencing

text: Arabidopsis thaliana

text: Sample 14

characteristic: title


E-MTAB-5132:Sample 15

characteristic: ENA-CHECKLIST

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 15

text: ArrayExpress

text: thale cress

text: seedling

characteristic: ecotype

text: small RNAs

characteristic: fraction

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Illumina 50bp single-end sequencing

characteristic: protocol

text: Arabidopsis thaliana

text: Sample 15


E-MTAB-5132:Sample 16

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DUNDEE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5132:Sample 16

text: ArrayExpress

text: thale cress

text: seedling

text: small RNAs

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Illumina 50bp single-end sequencing

text: Arabidopsis thaliana

text: Sample 16


E-MTAB-5132:Sample 17

text: DUNDEE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5132:Sample 17

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: seedling

text: small RNAs

text: gene knock down

characteristic: genetic modification

text: xrn3-8 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Illumina 50bp single-end sequencing

text: Arabidopsis thaliana

text: Sample 17


E-MTAB-5132:Sample 18

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 18

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: seedling

characteristic: developmental stage

text: small RNAs

text: gene knock down

text: xrn3-8 mutant

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Illumina 50bp single-end sequencing

text: Arabidopsis thaliana

text: Sample 18

characteristic: title


E-MTAB-5132:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 19

text: ArrayExpress

text: thale cress

text: seedling

characteristic: ecotype

text: small RNAs

characteristic: fraction

text: gene knock down

text: xrn3-8 mutant

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Illumina 50bp single-end sequencing

characteristic: protocol

text: Arabidopsis thaliana

text: Sample 19


E-MTAB-5132:Sample 10

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DUNDEE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5132:Sample 10

text: ArrayExpress

text: thale cress

text: Protocols: Seedlings were harvested 14 d after transfer to 24 °C. A. thaliana Columbia-0 background seeds were sown on solid MS10 medium, stratified for 2 d at 4 °C and grown in a controlled-environment room at a constant 24 °C under 16-h light and 8-h dark conditions. Total RNA was purified using an RNeasy kit. No subsequent polyadenylation of the RNA was performed, and further procedures in preparation for sequencing were done as described in Ozsolak et. al., 2009, Nature No library prep needed

text: seedling

text: total RNA depleted for ribosomal RNA

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Illumina strand-specific 100bp paired-end sequencing

text: Arabidopsis thaliana

text: Sample 10


E-MTAB-5132:Sample 11

text: DUNDEE

text: public

characteristic: SRA accession

text: E-MTAB-5132:Sample 11

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: seedling

text: total RNA depleted for ribosomal RNA

text: gene knock down

characteristic: genetic modification

text: xrn3-8 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 11


E-MTAB-5132:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 12

text: ArrayExpress

text: thale cress

characteristic: description

text: seedling

characteristic: developmental stage

text: total RNA depleted for ribosomal RNA

text: gene knock down

text: xrn3-8 mutant

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 12

characteristic: title


E-MTAB-5132:Sample 13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 13

text: ArrayExpress

text: thale cress

text: seedling

characteristic: ecotype

text: total RNA depleted for ribosomal RNA

characteristic: fraction

text: gene knock down

text: xrn3-8 mutant

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

characteristic: protocol

text: Arabidopsis thaliana

text: Sample 13


E-MTAB-5132:Sample 8

text: DUNDEE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5132:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: seedling

text: total RNA depleted for ribosomal RNA

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 8


E-MTAB-5132:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DUNDEE

text: public

text: E-MTAB-5132:Sample 9

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: seedling

text: total RNA depleted for ribosomal RNA

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 9


characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: Christensenella sp. Marseille-P2438

characteristic: organism

text: Christensenella sp. Marseille-P2438

characteristic: strain

text: Christensenella massiliensis genome

characteristic: title


characteristic: External Id

text: public

tag: Namespace:Department of Plant Sciences (IPV), CIGENE, Norwegian University of Life Sciences (NMBU), Arboretveien 6, As-1432, Norway

text: ArrayExpress

text: Lasang

characteristic: cultivar

text: Protocols: flower buds collected from two genotypes of Tripo (low seed yielding variety) and Lasang (High seed yielding variety) at early, middle and late flowering stages RNA was extracted using the Sigma SpectrumTM Plant Total RNA Kit (Sigma Life Science). On-Column DNAse kit was used to remove the DNA contamination. TruSeq Stranded Total RNA Library Prep Kit was used for library preparation for each sample

characteristic: description

text: early flowering

characteristic: developmental stage

text: Trifolium pratense

text: Trifolium pratense

text: flower bud

characteristic: organism part

text: Trifolium pratense


text: Department of Plant Sciences (IPV), CIGENE, Norwegian University of Life Sciences (NMBU), Arboretveien 6, As-1432, Norway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Lasang

text: early flowering

text: Trifolium pratense

text: Trifolium pratense

text: flower bud

text: Trifolium pratense


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Tripo

text: early flowering

text: Trifolium pratense

text: Trifolium pratense

text: flower bud

text: Trifolium pratense


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: Lasang

text: late flowering

text: Trifolium pratense

text: Trifolium pratense

text: flower bud

text: Trifolium pratense


text: public

text: ArrayExpress

text: Tripo

text: late flowering

text: Trifolium pratense

characteristic: organism

text: Trifolium pratense

text: flower bud

text: Trifolium pratense


text: public

text: ArrayExpress

text: Lasang

text: middle flowering

text: Trifolium pratense

text: Trifolium pratense

text: flower bud

text: Trifolium pratense

characteristic: title


characteristic: External Id

text: public

text: ArrayExpress

text: Tripo

text: middle flowering

text: Trifolium pratense

text: Trifolium pratense

text: flower bud

text: Trifolium pratense


text: CSISP

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: M tuberculosis


text: CSISP

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mtb


text: NATIONAL RESEARCH COUNCIL CANADA

text: public

tag: Namespace:NATIONAL RESEARCH COUNCIL CANADA

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

characteristic: project name

text: freshwater metagenome

text: MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


strain Alg239_V181

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Elham Karimi

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: strain Alg239_V181

tag: Namespace:Elham Karimi

characteristic: Submitter Id

text: We describe the draft genome sequence of Microbacterium sp. strain Alg239_V18, an actinobacterium retrieved from the marine sponge Spongia officinalis. Genome annotation revealed a vast gene repertoire involved in antibiotic and heavy metal-resistance, and a versatile carbohydrate metabolism encompassing chitin utilization potential and degradation of several carbon sources

characteristic: description

text: Ocean

text: Coastal water body

text: Seawater

text: Portugal

text: Marine Sponge

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Microbacteriaceae bacterium

text: Microbacteriaceae bacterium

text: Illumina

text: Microbacterium sp. strain Alg239_V18


characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

text: public

tag: Namespace:UNIVERSITY COLLEGE LONDON

text: human

characteristic: common name

text: Control, Unstimulated

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Monocyte RNA-Seq Samples

characteristic: title


text: UNIVERSITY COLLEGE LONDON

text: public

text: human

text: Control, LPS-Stimulated

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


text: UNIVERSITY COLLEGE LONDON

text: public

text: human

text: HD, LPS-Stimulated

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


text: UNIVERSITY COLLEGE LONDON

text: public

text: human

text: HD, Unstimulated

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


UCL 0705

text: UNIVERSITY COLLEGE LONDON

text: public

text: UCL 0705

text: human

text: HD, LPS-Stimulated

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


UCL 0711

text: UNIVERSITY COLLEGE LONDON

text: public

text: UCL 0711

text: human

text: Control, LPS-Stimulated

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


UCL 0739

text: UNIVERSITY COLLEGE LONDON

text: public

text: UCL 0739

text: human

text: Control, LPS-Stimulated

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


text: public

tag: Namespace:Academic Medical Center, University of Amsterdam

text: human lung metagenome

text: human lung metagenome

text: Endotracheal aspirate microbiome


text: Academic Medical Center, University of Amsterdam

text: public

text: human lung metagenome

text: human lung metagenome

text: Endotracheal aspirate microbiome


EC

text: public

text: EC

text: human lung metagenome

text: human lung metagenome

text: Endotracheal aspirate microbiome


text: USP

text: public

text: IPQ

characteristic: bio material

text: whole blood cells

characteristic: cell type

text: Psychiatry Institute - FMUSP

characteristic: collected by

text: human

text: DNA was extracted from whole blood and was quantified with Qubit™ (Life Technologies Corporation, Carlsbad, CA, USA). The exome was captured and enriched from genomic DNA using a Nextera exome enrichment kit (Illumina Inc., San Diego, CA, USA), representing 62 Mbp of the human genome (hg19 build). Sequencing was performed with the HiScan system (Illumina Inc., San Diego, CA, USA). Fragments were aligned around the hg19 reference genome using Burrows-Wheeler alignment (BWA) and variant calling was performed with GATK (Genome Analysis Toolkit).

text: Homo sapiens

text: Homo sapiens

text: Female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: USP

characteristic: INSDC center name

text: public

text: IPQ

text: whole blood cells

text: Psychiatry Institute - FMUSP

text: human

text: Homo sapiens

text: Homo sapiens

text: Male


text: USP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: IPQ

characteristic: cars

text: whole blood cells

text: Psychiatry Institute - FMUSP

text: human

text: Kyphosis, exhibits some difficulty standing on one foot, gait is symmetric with large steps; no alteration of gait stability

characteristic: neurological evaluation

text: Homo sapiens

text: Present eye contact and start interaction in an inadequate form very puerile but with no functionality, easily motivated and unmotivated laughter and collaborative, understands simple and some complex commands, uses imitation, verbal, simple sentences with exchange (mostly r for l), present syndromic features and probably ID.

characteristic: pq exam

text: Homo sapiens

text: Female


characteristic: External Id

text: USP

text: public

characteristic: Submitter Id

text: IPQ

text: whole blood cells

text: Psychiatry Institute - FMUSP

text: human

characteristic: common name

characteristic: description

text: Kyphoscoliosis, all deep reflexes are symmetric but slightly diminished, discrete hypotonia, gait is symmetric with large steps; no alteration of gait stability

text: Homo sapiens

characteristic: organism

text: Did not sustained eye contact or start interaction, agitation, unmotivated laughter; inappropriate social contact, understands simple commands, difficulty obeying some commands, no imitation, non-verbal (guttural sounds and screams are present); absence of functional communication, present syndromic features and probably ID

text: Homo sapiens

text: Male

text: QUADAUT_proband male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CONCEPCION

text: public

tag: Namespace:UNIVERSITY OF CONCEPCION

text: Sequencing through the 454 GS FLX technology of a mate pair library, from genomic DNA from a sulfur-oxidizing macrobacteria, isolated from sediments of the Humboldt Sulfuretum , front off central Chile.

text: Thiotrichales bacterium HS_08

text: Thiotrichales bacterium HS_08


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CONCEPCION

characteristic: INSDC center name

text: public

text: Sequencing through the 454 GS FLX technology of a single end library, from genomic DNA from a sulfur-oxidizing macrobacteria, isolated from sediments of the Humboldt Sulfuretum , front off central Chile.

text: Thiotrichales bacterium HS_08

text: Thiotrichales bacterium HS_08


text: Auckland University of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Auckland University of Technology

text: 16S rRNA gene amplicon from envrionmental DNA extracted from hypolithic sample, Devon Island, Canadian Arctic

text: biofilm metagenome

text: biofilm metagenome

text: Global biogeography of desert cyanobacteria


text: Auckland University of Technology

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16S rRNA gene amplicon from envrionmental DNA extracted from hypolithic sample, McMurdo Dry Valleys, Antarctica

text: biofilm metagenome

text: biofilm metagenome


text: Auckland University of Technology

text: public

text: 16S rRNA gene amplicon from envrionmental DNA extracted from hypolithic sample, Tibetan Plateau, China

text: biofilm metagenome

text: biofilm metagenome


text: Auckland University of Technology

text: public

text: 16S rRNA gene amplicon from envrionmental DNA extracted from hypolithic sample, Taklimakan Desert, China

text: biofilm metagenome

text: biofilm metagenome


text: Auckland University of Technology

text: public

text: nifH gene amplicon from envrionmental DNA extracted from hypolithic sample, Tibetan Plateau, China

text: biofilm metagenome

text: biofilm metagenome


text: Auckland University of Technology

text: public

text: nifH gene amplicon from hypolith sample, Taklimakan Desert, China

text: biofilm metagenome

text: biofilm metagenome


text: Auckland University of Technology

text: public

text: nifH gene amplicon from envrionmental DNA extracted from hypolithic sample, McMurdo Dry Valleys, Antarctica

text: biofilm metagenome

text: biofilm metagenome


text: Center of Innovative and bioprocessing

text: public

tag: Namespace:Center of Innovative and bioprocessing

characteristic: collection date

characteristic: depth

text: Soil

characteristic: environment (biome)

text: Field

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Metagenome sequencing

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Metagenomics of Filtered reads from soil


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: title


text: Clostridium perfringens

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Clostridium perfringens

text: Clostridium perfringens

text: Clostridium perfringens

characteristic: strain


text: Pragia fontium

text: SC

text: public

text: Pragia fontium

text: Pragia fontium

text: Pragia fontium


text: LNU

text: public

characteristic: collection date

text: seawater open mesopelagic subtropical Atlantic

characteristic: description

text: marine pelagic biome

characteristic: environment (biome)

text: marine pelagic

characteristic: environment (feature)

text: seawater

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: MOCA

characteristic: project name

text: metagenome

characteristic: sequencing method

text: water

characteristic: water environmental package


text: Gut Bacterium

characteristic: ArrayExpress-Phenotype

text: Clostridium difficile

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Clostridium difficile

characteristic: common name

text: Clostridioides difficile

characteristic: organism

text: Bacterial Genome

characteristic: sample description

text: Clostridioides difficile

text: Clostridium difficile

characteristic: title


text: Haemonchus contortus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

text: Haemonchus contortus


text: GSC

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Escherichia coli

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Tradis input

text: Escherichia coli

characteristic: strain


text: Escherichia coli

characteristic: ArrayExpress-Species

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Tradis output

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: ANSES

text: public

characteristic: collection date

text: Listeria monocytogenes

text: Food

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Food

characteristic: isolation source

characteristic: lat lon

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIa

characteristic: serovar


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Listeria monocytogenes

characteristic: common name

text: Food

text: France

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IVb


text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Listeria monocytogenes

text: Food

text: France

text: Food

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: IIc

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: ANSES

text: public

characteristic: collection date

text: Listeria monocytogenes

text: Food

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIb


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: gozbayram

text: public

text: Bacterial community in the anaerobic digestion of wheat straw in a lab-scale process

text: uncultured bacterium

text: uncultured bacterium

text: Bacterial communities in a lab-scale biogas reactor system


characteristic: External Id

text: Institute of Food Research

characteristic: INSDC center name

text: public

tag: Namespace:Institute of Food Research

text: ArrayExpress

characteristic: broker name

text: morphologically normal tissue adjacent to tumour

characteristic: clinical information

text: human

text: Protocols: Patients undergoing radical prostatectomy for organ confined prostate cancer were consented to allow the use of prostate tissue for research via the Biorepository at the Norfolk and Norwich University Hospital (NNUH) under ethical approval granted from the University of East Anglia (FMHS 20122014-37) to comply with the principles expressed in the Declaration of Helsinki. Patients underwent endoscopic extraperitoneal radical prostatectomy. All procedures were conducted by a single surgeon. The prostate gland was removed from the abdominal cavity immediately after resection and rapidly biopsied after extraction to avoid ischaemic artefacts using a standard core biopsy instrument. The extracted whole prostatectomy specimen was placed on a surgical table or equivalent and the subsequent steps were taken to collect the biopsy samples: (1) the apex and base of the gland were identified, the prostate was then cut transversely (axial section) half way along the gland, (2) using the midline and the urethra as guides, biopsies were taken from the peripheral and transition zones avoiding obvious tumour sites where feasible, (3) the remaining prostate gland was sent for histological analysis to inform the malignant status of each core. One tissue core from each zone was placed in RNAlater and stored at -80 °C for downstream RNA sequencing. Illumina barcoded TruSeq RNA library construction of 18 libraries from 18 total RNA samples

text: prostate carcinoma

characteristic: disease

text: benign

characteristic: histology

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: prostate

characteristic: organism part

text: peripheral zone of prostate

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

text: Institute of Food Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: prostate carcinoma

text: aggressive

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate

text: peripheral zone of prostate

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Food Research

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: prostate carcinoma

text: aggressive

text: Homo sapiens

text: Homo sapiens

text: prostate

text: transition zone of prostate

text: Homo sapiens

text: male


text: Institute of Food Research

text: public

text: ArrayExpress

characteristic: clinical information

text: human

text: prostate carcinoma

characteristic: disease

text: benign

characteristic: histology

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: prostate

characteristic: organism part

text: transition zone of prostate

characteristic: sampling site

text: Homo sapiens

text: male


E-MTAB-5115:Sample 1

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5115:Sample 1

tag: Namespace:Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics

text: ArrayExpress

text: undifferentiated human embryonic stem cell

characteristic: cell type

text: human

text: Protocols: Nascent RNA was captured using 45min pulse according to the manual to Click-iT® Nascent RNA Capture Kit. 1 µg of DNAse-treated RNA was treated with RiboZero Gold (Human/Mouse/Rat) kit to remove rRNAs, followed by RNA cleanup using the RNeasy Minelute RNA cleanup kit. Sequencing libraries were prepared using TruSeq Stranded total RNA LT kit according to manufacturer’s instructions using 11 cycles of PCR followed by purification with Agencourt Ampure XP beads. Libraries were evaluated on an Agilent 2100 Bioanalyzer using the DNA 1000 kit and DNA concentration was measured using a Qubit dsDNA HS Assay Kit. Samples were sequenced using a HiSeq2500 instrument to generate 50-nt single-end reads, sequencing depth was 20-40 Mio reads per library. H9 human ESCs (H9 line) were cultured in mTeSR1 medium on Matrigel-coated plates. Colonies were passaged for maintanence by Gentle Cell Dissociation Reagent Human ESCs were not treated and maintained in pluripotency using mTesr medium under same conditions and in parallel as samples prepared for total RNAseq. RNA-seq

text: Homo sapiens

text: Homo sapiens

characteristic: replicate

text: Homo sapiens

text: Sample 1


E-MTAB-5115:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics

text: public

text: E-MTAB-5115:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 2

characteristic: title


text: UCSDMI

characteristic: INSDC center name

text: public

text: Ant Solo n cont_A

characteristic: anonymized name

text: Missing: Not reported

characteristic: depth

text: control soil

characteristic: description

text: TRUE

characteristic: elevation

text: polar biome

characteristic: env biome

text: surface soil

characteristic: env feature

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Antarctica:Brazil:Commandante Ferrar station

characteristic: geo loc name

text: Ant Solo n cont

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: LBNL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: surface soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ant Solo n cont_B

text: Missing: Not reported

text: control soil

text: TRUE

text: polar biome

text: surface soil

text: soil

text: soil

text: TRUE

text: Ant Solo n cont

text: soil metagenome

characteristic: organism

text: LBNL

text: TRUE

text: TRUE

text: completed

text: surface soil

text: sequenced (16S)

text: soil metagenome


text: UCSDMI

characteristic: INSDC center name

text: public

text: Ant Solo n cont_C

characteristic: anonymized name

text: Missing: Not reported

characteristic: depth

text: control soil

characteristic: description

text: TRUE

characteristic: elevation

text: polar biome

characteristic: env biome

text: surface soil

characteristic: env feature

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Ant Solo n cont

text: soil metagenome

text: LBNL

text: TRUE

text: TRUE

text: completed

text: surface soil

text: sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: Ant Solo cont_A

text: Missing: Not reported

text: control soil

text: TRUE

text: polar biome

text: surface soil

text: soil

text: soil

text: TRUE

characteristic: geo loc name

text: Ant Solo cont

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: LBNL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: surface soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ant Solo cont_B

characteristic: anonymized name

text: Missing: Not reported

characteristic: depth

text: control soil

characteristic: description

text: TRUE

text: polar biome

text: surface soil

text: soil

text: soil

text: TRUE

text: Ant Solo cont

text: soil metagenome

characteristic: organism

text: LBNL

text: TRUE

text: TRUE

text: completed

text: surface soil

text: sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: Ant Solo cont_C

text: Missing: Not reported

text: control soil

text: TRUE

characteristic: elevation

text: polar biome

characteristic: env biome

text: surface soil

characteristic: env feature

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Ant Solo cont

text: soil metagenome

text: LBNL

text: TRUE

text: TRUE

text: completed

text: surface soil

text: sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Microcosms constructed at Brazilian Antarctic Station Comandante Ferraz using diesel-oil contaminated soil (15 days treatment)

text: TRUE

text: polar biome

text: oil contaminated soil

text: soil

text: soil

text: TRUE

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: LBNL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: oil contaminated soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: depth

characteristic: description

text: TRUE

text: polar biome

text: oil contaminated soil

text: soil

text: soil

text: TRUE

text: soil metagenome

characteristic: organism

text: LBNL

text: TRUE

text: TRUE

text: completed

text: oil contaminated soil

text: sequenced (16S)

text: soil metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GAZ:USA

characteristic: country

text: Stanleya pinnata HA, Pine Ridge (seleniferous)

text: TRUE

text: 0.4 MD 0

characteristic: elevation

text: coniferous forest biome

characteristic: env biome

text: rhizosphere

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: rhizosphere

text: USA:CO

text: TRUE

text: rhizome

characteristic: host common name

characteristic: host taxid

text: rhizosphere metagenome

text: CSU

text: FALSE

text: TRUE

text: completed

text: rhizome

text: rhizosphere metagenome

text: 15.63 MD 0.12

text: 2.33 MD 0.03b

text: 1.63 MD 0.09

text: 1.67 MD 0.03

text: 324.30 MD 2.3

text: 2.03 MD 0.07

text: 0.16 MD 0.01

text: 0.11 MD 0.05

text: 4.60 MD 0.12

text: 39.73 MD 0.12

text: 394 MD 1.53

text: 149 MD 1.97

text: 4.57 MD 0.09

text: 0.01 MD 0

text: 13.97 MD 0.12

text: 0.42 MD 0.02

text: 1.23 MD 0.03

text: 8.1 MD 0.06

text: 1.23 MD 0.09

text: 0.15 MD 0

text: 4.5 MD 0.06

characteristic: time of collection

text: Investigating the rhizosphere microbiome as influenced by soil selenium, plant species, plant selenium accumulation and geographic proximity

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: GAZ:USA

characteristic: depth

text: Astragalus bisulcatus HA, Pine Ridge (seleniferous)

text: TRUE

text: 0.43 MD 0.03

text: coniferous forest biome

text: rhizosphere

text: soil

text: soil

text: rhizosphere

text: USA:CO

characteristic: geo loc name

text: TRUE

text: rhizome

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: rhizosphere metagenome

text: CSU

text: FALSE

text: TRUE

characteristic: public

text: completed

text: rhizome

characteristic: sample type

text: rhizosphere metagenome

text: 13.9 MD 0.12

text: 1.63 MD 0.12

text: 0.78 MD 0.02

text: 0.72 MD 0.02

text: 350.20 MD 1.3

text: 16.25 MD 0.14

text: 0.41 MD 0.01

text: 0.08 MD 0.06

text: 11.7 MD 0.09

text: 7.5 MD 0.09

text: 453 MD 1.74

text: 61.3 MD 0.46

text: 11.67 MD 0.09

text: 0.04 MD 0.01

text: 24.40 MD 0.25

text: 1.15 MD 0.02

text: 2.83 MD 0.03

text: 2.1 MD 0.06

text: 1.6 MD 0.06

text: 1.2 MD 0.06

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