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characteristic: disease status

text: human oral biome

characteristic: environment (biome)

text: human-associated habitat

text: biofilm

text: Germany

text: human-oral

text: metagenome

text: human oral metagenome

characteristic: organism

text: OralMicrobiomeFanconi

text: human oral metagenome

text: pyrosequencing

text: male

characteristic: title


characteristic: External Id

text: CEBITEC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: oral cavity

characteristic: collection date

text: left cheek

text: normal mucosa

text: human oral biome

text: human-associated habitat

text: biofilm

text: Germany

text: human-oral

characteristic: humam oral environmental package

text: metagenome

text: human oral metagenome

text: OralMicrobiomeFanconi

characteristic: project name

text: human oral metagenome

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CEBITEC

text: public

characteristic: INSDC status

characteristic: age

text: oral cavity

characteristic: body site

text: right cheek

text: normal mucosa

text: human oral biome

text: human-associated habitat

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

text: metagenome

characteristic: investigation type

text: human oral metagenome

text: OralMicrobiomeFanconi

text: human oral metagenome

text: pyrosequencing

text: male


characteristic: External Id

text: CEBITEC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: oral cavity

text: left border of the tongue

characteristic: description

text: tumor

characteristic: disease status

text: human oral biome

characteristic: environment (biome)

text: human-associated habitat

text: biofilm

text: Germany

text: human-oral

text: metagenome

text: human oral metagenome

characteristic: organism

text: OralMicrobiomeFanconi

text: human oral metagenome

text: pyrosequencing

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UH

text: public

characteristic: INSDC status

unit: kg

characteristic: amount or size of sample collected

characteristic: collection date

text: composite of 8 soil cores, sieving <5 mm

characteristic: composite design/sieving (if any)

text: landfarming, no more dumping

characteristic: current land use

unit: m

characteristic: depth

text: Surface soil, total petroleum hydrocarbons 3.1 g/kg, bacterial clones

text: landfarming field

text: refinery waste landfarming field

text: soil

text: THP 3.1 g/kg

characteristic: experimental factor

text: Finland

characteristic: geographic location (elevation)

text: urea fertilisation, liming

characteristic: history/agrochemical additions

text: spreading of oily sludges 1980-2005

characteristic: history/previous land use

text: mimarks-survey

text: TOPO-TA Cloning, Invitrogen

characteristic: library construction method

text: by amplicon length, few of each OTUs sequenced

characteristic: library screening strategy

text: MOBIO RNA Power Soil Total RNA Isolation Kit+RNA Power Soil DNA Elution Accessory Kit

characteristic: nucleic acid extraction

text: uncultured bacterium

text: fD1 (AGAGTTTGATCCTGGCTCAG), PRUN518r (ATTACCGCGGCTGCTGG)

characteristic: pcr primers

characteristic: ph

text: 0.02 M CaCl2

characteristic: ph method

text: duplicates pooled

characteristic: pooling of DNA extracts (ifdone)

text: Oilfield

characteristic: project name

unit: g

characteristic: sample weight for DNA extraction

text: uncultured bacterium

text: manual

characteristic: sequence quality check

text: Sanger (both strands)

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: VarioMax CN

characteristic: total N method

unit: g/kg

characteristic: total n

text: VarioMax CN

characteristic: total organic C method

characteristic: total organic carbon

unit: g/g

characteristic: water content of soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

characteristic: composite design/sieving (if any)

text: landfarming, no more dumping

characteristic: current land use

characteristic: depth

text: Surface soil, total petroleum hydrocarbons 3.1 g/kg, archaeal clones

characteristic: description

text: landfarming field

characteristic: environment (biome)

text: refinery waste landfarming field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: THP 3.1 g/kg

characteristic: experimental factor

text: Finland

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: urea fertilisation, liming

characteristic: history/agrochemical additions

text: spreading of oily sludges 1980-2005

characteristic: history/previous land use

text: mimarks-survey

characteristic: investigation type

text: TOPO-TA Cloning, Invitrogen

characteristic: library construction method

characteristic: library screening strategy

characteristic: nucleic acid extraction

text: uncultured archaeon

characteristic: organism

text: Ar3f (TTCCGGTTGATCCTGCCGGA), PARCH519R_mod (TTACCGCGGCGGCTG)

text: 0.02 M CaCl2

text: duplicates pooled

text: Oilfield

text: uncultured archaeon

text: manual

text: Sanger (both strands)

text: soil

text: 16S rRNA

characteristic: title

text: VarioMax CN

text: VarioMax CN


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

characteristic: composite design/sieving (if any)

text: landfarming, no more dumping

characteristic: current land use

characteristic: depth

text: Surface soil, total petroleum hydrocarbons 6.8 g/kg, bacterial clones

text: landfarming field

text: refinery waste landfarming field

text: soil

text: THP 6.8 g/kg

text: Finland

text: urea fertilisation, liming

text: spreading of oily sludges 1980-2005

text: mimarks-survey

text: TOPO-TA Cloning, Invitrogen

text: uncultured bacterium

characteristic: pcr primers

characteristic: ph

text: 0.02 M CaCl2

characteristic: ph method

text: duplicates pooled

characteristic: pooling of DNA extracts (ifdone)

text: Oilfield

characteristic: project name

characteristic: sample weight for DNA extraction

text: uncultured bacterium

text: manual

characteristic: sequence quality check

text: Sanger (both strands)

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: VarioMax CN

characteristic: total N method

characteristic: total n

text: VarioMax CN

characteristic: total organic C method

characteristic: total organic carbon

characteristic: water content of soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

text: composite of 10 soil cores, sieving <5 mm

characteristic: composite design/sieving (if any)

text: landfarming, no more dumping

characteristic: current land use

characteristic: depth

text: Subsurface soil, total petroleum hydrocarbons 17 g/kg, archaeal clones

characteristic: description

text: landfarming field

characteristic: environment (biome)

text: refinery waste landfarming field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: THP 17 g/kg

characteristic: experimental factor

text: Finland

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: urea fertilisation, liming

characteristic: history/agrochemical additions

text: spreading of oily sludges 1980-2005

characteristic: history/previous land use

text: mimarks-survey

characteristic: investigation type

text: TOPO-TA Cloning, Invitrogen

characteristic: library construction method

characteristic: library screening strategy

characteristic: nucleic acid extraction

text: uncultured archaeon

characteristic: organism

text: 0.02 M CaCl2

text: duplicates pooled

text: Oilfield

text: uncultured archaeon

text: manual

text: Sanger (both strands)

text: soil

text: 16S rRNA

characteristic: title

text: VarioMax CN

text: VarioMax CN


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

characteristic: composite design/sieving (if any)

text: landfarming, no more dumping

characteristic: current land use

characteristic: depth

text: Subsurface soil, total petroleum hydrocarbons 12 g/kg, bacterial clones

text: landfarming field

text: refinery waste landfarming field

text: soil

text: THP 12 g/kg

text: Finland

text: urea fertilisation, liming

text: spreading of oily sludges 1980-2005

text: mimarks-survey

text: TOPO-TA Cloning, Invitrogen

text: uncultured bacterium

characteristic: pcr primers

characteristic: ph

text: 0.02 M CaCl2

characteristic: ph method

text: duplicates pooled

characteristic: pooling of DNA extracts (ifdone)

text: Oilfield

characteristic: project name

characteristic: sample weight for DNA extraction

text: uncultured bacterium

text: manual

characteristic: sequence quality check

text: Sanger (both strands)

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: VarioMax CN

characteristic: total N method

characteristic: total n

text: VarioMax CN

characteristic: total organic C method

characteristic: total organic carbon

characteristic: water content of soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

characteristic: composite design/sieving (if any)

text: landfarming, no more dumping

characteristic: current land use

characteristic: depth

text: Subsurface soil, total petroleum hydrocarbons 22 g/kg, archaeal clones

characteristic: description

text: landfarming field

characteristic: environment (biome)

text: refinery waste landfarming field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: THP 22 g/kg

characteristic: experimental factor

text: Finland

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: urea fertilisation, liming

characteristic: history/agrochemical additions

text: spreading of oily sludges 1980-2005

characteristic: history/previous land use

text: mimarks-survey

characteristic: investigation type

text: TOPO-TA Cloning, Invitrogen

characteristic: library construction method

characteristic: library screening strategy

characteristic: nucleic acid extraction

text: uncultured archaeon

characteristic: organism

text: 0.02 M CaCl2

text: duplicates pooled

text: Oilfield

text: uncultured archaeon

text: manual

text: Sanger (both strands)

text: soil

text: 16S rRNA

characteristic: title

text: VarioMax CN

text: VarioMax CN


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

characteristic: composite design/sieving (if any)

text: landfarming, no more dumping

characteristic: current land use

characteristic: depth

text: Subsurface soil, total petroleum hydrocarbons 44 g/kg, bacterial clones

text: landfarming field

text: refinery waste landfarming field

text: soil

text: THP 44 g/kg

text: Finland

text: urea fertilisation, liming

text: spreading of oily sludges 1980-2005

text: mimarks-survey

text: TOPO-TA Cloning, Invitrogen

text: uncultured bacterium

characteristic: pcr primers

characteristic: ph

text: 0.02 M CaCl2

characteristic: ph method

text: duplicates pooled

characteristic: pooling of DNA extracts (ifdone)

text: Oilfield

characteristic: project name

characteristic: sample weight for DNA extraction

text: uncultured bacterium

text: manual

characteristic: sequence quality check

text: Sanger (both strands)

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: VarioMax CN

characteristic: total N method

characteristic: total n

text: VarioMax CN

characteristic: total organic C method

characteristic: total organic carbon

characteristic: water content of soil


18s diversity in the seasurface

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MBA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 18s diversity in the seasurface

characteristic: Submitter Id

characteristic: collection date

text: marine

characteristic: environment (biome)

text: sea surface

characteristic: environment (feature)

text: seawater

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: United Kingdom

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Capsicum baccatum var. pendulum

characteristic: organism

text: 18s diversity in the seasurface

text: Capsicum baccatum var. pendulum

text: Ion torrent PGM

text: 18s diversity in the seasurface

characteristic: title

text: water

characteristic: water environmental package


dermal papilla

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SNU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: dermal papilla

text: human

characteristic: common name

text: land

text: city

text: air

text: South Korea

text: human-skin

characteristic: human skin environmental package

text: metagenome

text: Homo sapiens

text: sequencing of hair dermal papilla

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: dermal papilla


text: MQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Flow sorted and genome amplified Synechococcus cells sampled from CTD JR218028 14m depth on AMT18, 2008.

characteristic: description

text: marine

characteristic: environment (biome)

text: pelagic zone

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (depth)

text: metagenome

text: Synechococcus sp.

text: NERC population genomics of Synechococcus

text: Synechococcus sp.

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MQ

text: public

text: Flow sorted and genome amplified Synechococcus cells sampled from CTD JR218076 2m depth on AMT18, 2008.

text: marine

text: pelagic zone

text: water

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Synechococcus sp.

characteristic: organism

text: Synechococcus sp.

characteristic: title

text: water

characteristic: water environmental package


text: UU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: L

characteristic: amount or size of sample collected

text: 2010-12-1 - 2011-1-12

text: Bacterial Diversity based on 16S rDNA amplicon sequencing

text: sea

text: saline water

text: water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

text: Bakt 341F_Bakt 805R

characteristic: pcr primers

text: ASPIRE Microbiome

characteristic: project name

unit: practical salinity unit

characteristic: salinity

text: marine metagenome

text: 454 Sequencing

characteristic: sequencing method

unit: ºC

characteristic: temperature

text: Amundsen Sea Polynya Microbiome

text: Inoculum

characteristic: treatment

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

text: public

text: 2010-12-1 - 2011-1-12

characteristic: collection date

characteristic: description

text: sea

characteristic: environment (biome)

text: saline water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: Bakt 341F_Bakt 805R

text: ASPIRE Microbiome

text: marine metagenome

text: 454 Sequencing

text: Amundsen Sea Polynya Microbiome

text: control

text: water


text: UU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: 2010-12-1 - 2011-1-12

text: sea

text: saline water

text: water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: Bakt 341F_Bakt 805R

characteristic: pcr primers

text: ASPIRE Microbiome

characteristic: project name

characteristic: salinity

text: marine metagenome

text: 454 Sequencing

text: Amundsen Sea Polynya Microbiome

characteristic: title

text: control+nuts

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

text: public

text: 2010-12-1 - 2011-1-12

characteristic: collection date

characteristic: description

text: sea

characteristic: environment (biome)

text: saline water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (depth)

text: mimarks-survey

text: marine metagenome

text: Bakt 341F_Bakt 805R

text: ASPIRE Microbiome

text: marine metagenome

text: 454 Sequencing

characteristic: sequencing method

characteristic: temperature

text: Amundsen Sea Polynya Microbiome

text: mix

characteristic: treatment

text: water


text: UU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: 2010-12-1 - 2011-1-12

text: sea

text: saline water

text: water

text: Southern Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: Bakt 341F_Bakt 805R

characteristic: pcr primers

text: ASPIRE Microbiome

characteristic: project name

text: marine metagenome

text: 454 Sequencing

text: Amundsen Sea Polynya Microbiome

text: glut

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

text: public

text: 2010-12-1 - 2011-1-12

characteristic: collection date

characteristic: description

text: sea

characteristic: environment (biome)

text: saline water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (depth)

text: mimarks-survey

text: marine metagenome

text: Bakt 341F_Bakt 805R

text: ASPIRE Microbiome

characteristic: salinity

text: marine metagenome

text: 454 Sequencing

text: Amundsen Sea Polynya Microbiome

characteristic: title

text: NAG

text: water

characteristic: water environmental package


text: UU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: 2010-12-1 - 2011-1-12

text: sea

text: saline water

text: water

text: Southern Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: Bakt 341F_Bakt 805R

text: ASPIRE Microbiome

text: marine metagenome

text: 454 Sequencing

characteristic: sequencing method

characteristic: temperature

text: Amundsen Sea Polynya Microbiome

text: pyr

characteristic: treatment

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

text: public

text: 2010-12-1 - 2011-1-12

characteristic: collection date

characteristic: description

text: sea

characteristic: environment (biome)

text: saline water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (depth)

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: Bakt 341F_Bakt 805R

characteristic: pcr primers

text: ASPIRE Microbiome

characteristic: project name

text: marine metagenome

text: 454 Sequencing

text: Amundsen Sea Polynya Microbiome

text: Station Sample

text: water


text: UU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: 2010-12-1 - 2011-1-12

text: sea

text: saline water

text: water

text: Southern Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: Bakt 341F_Bakt 805R

text: ASPIRE Microbiome

characteristic: salinity

text: marine metagenome

text: 454 Sequencing

text: Amundsen Sea Polynya Microbiome

characteristic: title

text: 7d dark

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UU

text: public

text: 2010-12-1 - 2011-1-12

characteristic: collection date

characteristic: description

text: sea

characteristic: environment (biome)

text: saline water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (depth)

text: mimarks-survey

text: marine metagenome

text: Bakt 341F_Bakt 805R

text: ASPIRE Microbiome

text: marine metagenome

text: 454 Sequencing

characteristic: sequencing method

characteristic: temperature

text: Amundsen Sea Polynya Microbiome

text: 7d light

characteristic: treatment

text: water


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Shigella sonnei 53G

characteristic: common name

text: not provided

characteristic: country

text: not provided

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

characteristic: isolation source

text: Shigella sonnei 53G

characteristic: organism

characteristic: pmid

text: Shigella sonnei 53G

text: Not known

characteristic: specific host

characteristic: strain

text: Shigella sonnei 53G; Shigella sonnei


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI-UI

text: public

characteristic: collection date

text: Tropical

characteristic: environment (biome)

text: islands

characteristic: environment (feature)

text: fecal

characteristic: environment (material)

text: Ecuador

characteristic: geographic location (country and/or sea,region)

text: Ecuador

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: gut metagenome

text: Iguanas metagenome

characteristic: project name

text: gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: Iguanas enrichment

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Italy

characteristic: country

text: Carriage

characteristic: host status

text: Not known

characteristic: isolation source

text: Staphylococcus saprophyticus

characteristic: organism

text: Staphylococcus saprophyticus

text: Human

characteristic: specific host

characteristic: strain

text: 36_82B 9283323


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SYDNEY UNIVERSITY

text: public

tag: Namespace:SYDNEY UNIVERSITY

characteristic: collection date

text: urban biome

characteristic: environment (biome)

text: city

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea,region)

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

characteristic: humam oral environmental package

text: mimarks-survey

text: oral metagenome

text: Bacterial profile of dentine caries and the impact of pH on bacterial population diversity

text: oral metagenome

text: pyrosequencing

text: dentine caries


text: LSHTM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: First biological replicate of the TraDIS library

characteristic: description

text: United Kingdom: England, London

characteristic: geographic location (country and/or sea)

text: free-living

characteristic: host scientific name

text: Burkholderia pseudomallei K96243

text: Burkholderia pseudomallei K96243

text: Burkholderia pseudomallei TraDIS

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSHTM

text: public

characteristic: collection date

text: Second replicate of TraDIS

text: United Kingdom: England, London

text: free-living

text: Burkholderia pseudomallei K96243

characteristic: organism

text: Burkholderia pseudomallei K96243

characteristic: strain

text: Burkholderia pseudomallei TraDIS


text: RUSUNJ

characteristic: INSDC center name

text: public

text: aquifer and wetland sediment samples from Bemidji MN oil spill site collected summer 2012

text: aquifer sediment

characteristic: note

text: uncultured bacterium

text: uncultured bacterium

text: Bemidji 2012


text: RUSUNJ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wetland sediment

text: uncultured bacterium

text: uncultured bacterium

text: Bemidji 2012


text: CSISP

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HIV-infected individual on succesful antiretroviral therapy

text: urban biome

characteristic: environment (biome)

text: city

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human metagenome

text: Dysfunctional gut microbiota drives chronic immune activation in HIV-treated individuals

characteristic: project name

text: human metagenome

text: pyrosequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSISP

text: public

characteristic: Submitter Id

characteristic: collection date

text: Healthy Controls

characteristic: description

text: urban biome

text: city

text: Feces

text: Spain

text: human-gut

text: metagenome

text: human metagenome

characteristic: organism

text: human metagenome

text: pyrosequencing

characteristic: title


AM 0h

text: UGHENT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AM 0h

text: CGTATCGCCTCCCTCGCGCCATCAG, CTATGCGCCTTGCCAGCCCGCTCAG

characteristic: adapters

text: human oral mucosa model

characteristic: environment (biome)

text: oral mucosa

characteristic: environment (feature)

text: mucus

text: Belgium

text: human-oral

characteristic: humam oral environmental package

text: metagenome

text: AGCCTAAGCT

characteristic: multiplex identifiers

text: human oral metagenome

text: AGAGTTTGATCCTGGCTCAG, GTATTACCGCGGCTGCTGGCA

characteristic: pcr primers

text: Ugent GOA BOF12/GOA/008

text: human oral metagenome

text: 454 GS FLX

text: 16S rRNA

characteristic: target gene


A 24h

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGHENT

text: public

text: A 24h

characteristic: Submitter Id

text: human oral mucosa model

text: oral mucosa

text: mucus

characteristic: environment (material)

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

text: metagenome

characteristic: investigation type

text: ACTTGAACTG

text: human oral metagenome

text: Ugent GOA BOF12/GOA/008

characteristic: project name

text: human oral metagenome

text: 454 GS FLX

characteristic: sequencing method

text: 16S rRNA


AM 24h

text: UGHENT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AM 24h

characteristic: adapters

characteristic: collection date

characteristic: description

text: human oral mucosa model

characteristic: environment (biome)

text: oral mucosa

text: mucus

text: Belgium

text: human-oral

text: metagenome

text: ATCCGAATCG

text: human oral metagenome

characteristic: organism

text: Ugent GOA BOF12/GOA/008

text: human oral metagenome

text: 454 GS FLX

text: 16S rRNA

characteristic: title


Simple 24h

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGHENT

text: public

text: Simple 24h

characteristic: Submitter Id

text: human oral mucosa model

text: oral mucosa

characteristic: environment (feature)

text: mucus

characteristic: environment (material)

text: Belgium

text: human-oral

characteristic: humam oral environmental package

text: metagenome

text: CAGGTCCAGT

characteristic: multiplex identifiers

text: human oral metagenome

characteristic: pcr primers

text: Ugent GOA BOF12/GOA/008

text: human oral metagenome

text: 454 GS FLX

text: 16S rRNA

characteristic: target gene


complex 24h

text: UGHENT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: complex 24h

characteristic: adapters

text: human oral mucosa model

text: oral mucosa

text: mucus

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

text: metagenome

characteristic: investigation type

text: CTAAGCCTAG

text: human oral metagenome

text: Ugent GOA BOF12/GOA/008

characteristic: project name

text: human oral metagenome

text: 454 GS FLX

characteristic: sequencing method

text: 16S rRNA


A 48h

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGHENT

text: public

text: A 48h

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: human oral mucosa model

characteristic: environment (biome)

text: oral mucosa

characteristic: environment (feature)

text: mucus

text: Belgium

text: human-oral

text: metagenome

text: TAGGCTTCAG

text: human oral metagenome

characteristic: organism

text: Ugent GOA BOF12/GOA/008

text: human oral metagenome

text: 454 GS FLX

text: 16S rRNA

characteristic: title


AM 48h

text: UGHENT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AM 48h

characteristic: adapters

text: human oral mucosa model

text: oral mucosa

text: mucus

characteristic: environment (material)

text: Belgium

text: human-oral

characteristic: humam oral environmental package

text: metagenome

text: AGTTCTTGAC

characteristic: multiplex identifiers

text: human oral metagenome

characteristic: pcr primers

text: Ugent GOA BOF12/GOA/008

text: human oral metagenome

text: 454 GS FLX

text: 16S rRNA

characteristic: target gene


Simple 48h

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGHENT

text: public

text: Simple 48h

characteristic: Submitter Id

characteristic: collection date

text: human oral mucosa model

text: oral mucosa

text: mucus

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

text: metagenome

characteristic: investigation type

text: ACTTGTTCAG

text: human oral metagenome

text: Ugent GOA BOF12/GOA/008

characteristic: project name

text: human oral metagenome

text: 454 GS FLX

characteristic: sequencing method

text: 16S rRNA


complex 48h

text: UGHENT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: complex 48h

characteristic: adapters

characteristic: description

text: human oral mucosa model

characteristic: environment (biome)

text: oral mucosa

characteristic: environment (feature)

text: mucus

text: Belgium

text: human-oral

text: metagenome

text: TCAAGTTAGC

text: human oral metagenome

characteristic: organism

text: Ugent GOA BOF12/GOA/008

text: human oral metagenome

text: 454 GS FLX

text: 16S rRNA

characteristic: title


Athletes

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TFRC

text: public

text: Athletes

characteristic: Submitter Id

text: controls

characteristic: anonymized name

characteristic: collection date

text: human

characteristic: common name

text: athletes fecal samples

text: Human Gut

text: Human Gut

text: faeces

characteristic: environment (material)

text: Ireland

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: elite athletes

text: Homo sapiens

text: pyrosequencing

text: athletes


text: CSIRO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

unit: µM

characteristic: calcium

text: Fluid sample collected from the A7A oil well in the Tuna oil field in the Gippsland Basin, Australia.

text: Marine biome

text: Ocean

text: Ocean water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: magnesium

text: bicarbonate 1.17g/l

characteristic: miscellaneous parameter

text: marine metagenome

characteristic: ph

text: A7A oil well metagenome

characteristic: project name

characteristic: relevant electronic resources

characteristic: salinity

text: One liter of formation water was filtered through a 0.2-uM polyvinylidene difluoride (PVDF) filter disc and subjected to genomic DNA extraction using a Meta-G-Nome DNA isolation kit (Epicenter Biotechnologies).

characteristic: sample material processing

text: marine metagenome

text: Illumina SBS

characteristic: sequencing method

unit: µmol/kg

characteristic: sulfate

text: A7A oil well sample

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Grassland

characteristic: current land use

characteristic: depth

text: terrestrial biome

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Iceland

characteristic: geographic location (elevation)

text: A horizon

characteristic: horizon

text: metagenome

text: soil metagenome

characteristic: organism

text: 16S U515F/907R

characteristic: pcr primers

text: soil metagenome

text: Roche 454 GS FLX Titanium sequencer

text: soil

characteristic: soil environmental package

text: Histic Andosol

characteristic: soil taxonomic/fao classification

text: genomic soil DNA

characteristic: title