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text: Amplicon (V3-V4) of 16S rRNA gene from subject 37


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO- Public Health Research

text: public

text: human gut metagenome

characteristic: common name

text: fecal sample from subject 39

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

text: human-associated habitat

text: Spain

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: Amplicon (V3-V4) of 16S rRNA gene from subject 39

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO- Public Health Research

text: public

text: human gut metagenome

text: fecal sample from subject 40

text: terrestrial biome

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Amplicon (V3-V4) of 16S rRNA gene from subject 40


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO- Public Health Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut metagenome

text: fecal sample from subject 41

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: Amplicon (V3-V4) of 16S rRNA gene from subject 41


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO- Public Health Research

text: public

text: human gut metagenome

characteristic: common name

text: fecal sample from subject 42

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

text: human-associated habitat

text: Spain

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: Amplicon (V3-V4) of 16S rRNA gene from subject 42

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO- Public Health Research

text: public

text: human gut metagenome

text: fecal sample from subject 43

text: terrestrial biome

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Amplicon (V3-V4) of 16S rRNA gene from subject 43


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERISTY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UPPSALA UNIVERISTY

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: CH10 Normal


characteristic: ENA-LAST-UPDATE

text: UPPSALA UNIVERISTY

text: public

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: CH10 Tumor

characteristic: title


characteristic: External Id

text: UPPSALA UNIVERISTY

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: CH11 Normal


text: UPPSALA UNIVERISTY

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: CH11 Tumor


text: Yeast

characteristic: ArrayExpress-Species

text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Hatching:Long-pec - Hatching:Pec-fin - ZFS:0000033 - ZFS:0000034

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: TLF

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salmonella typhimurium, pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 1 (Ambion).

characteristic: sample description

text: Danio rerio

text: TLF

characteristic: strain


text: Larval:Protruding-mouth - ZFS:0000035

text: Whole embryo

text: Danio rerio

text: TLF

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 24 hours post injection. The RNA also contains ERCC spike mix 1 (Ambion).

text: Danio rerio

text: TLF


text: Whole embryo

text: Danio rerio

text: TLF

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: Total RNA from a single zebrafish embryo from the TLF strain mock injected with 8nl of 2%Phenol Red in PBS at 48hpf and collected 6 hours post injection. The RNA also contains ERCC spike mix 1 (Ambion).

text: Danio rerio

text: TLF


text: Larval:Protruding-mouth - ZFS:0000035

text: Whole embryo

text: Danio rerio

text: TLF

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: Total RNA from a single zebrafish embryo from the TLF strain injected with 8nl of Salmonella typhimurium, pathogen load of 179 CFU in 2%Phenol Red in PBS at 48hpf and collected 24 hours post infection. The RNA also contains ERCC spike mix 1 (Ambion).

text: Danio rerio

text: TLF


text: BGI

text: public

characteristic: collection date

characteristic: common name

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: CD-project

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Stool sample from China

characteristic: title

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human gut

text: human-associated habitat

text: faeces

text: China

text: China

text: human-gut

text: metagenome

text: human gut metagenome

text: MetaHIT-IGC

text: human gut metagenome

text: Illumina

text: Stool sample from China


FoFaeC

text: National Technical University of Athens

text: public

characteristic: SRA accession

text: FoFaeC

tag: Namespace:National Technical University of Athens

characteristic: Submitter Id

text: Ferulic acid esterase from Fusarium oxysporum that belongs to the fungal tannase family.

characteristic: description

text: Fusarium oxysporum

text: Fusarium oxysporum

text: Ferulic acid esterase from Fusarium oxysporum.


text: public

tag: Namespace:Ludwig Center for Cancer Research, University of Lausanne, Lausanne, Switzerland  Swiss Institute of Bioinformatics

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

characteristic: common name

text: Protocols: Spleens from two heterozygote Tg(lck:EGFP) fish were dissected and passed through a 40μm cell strainer using the plunger of a 1-mL syringe and cells were collected in cold 1xPBS/5% FBS. A non-transgenic line was used to set up the gating and exclude autofluorescent cells. Propidium iodide (PI) staining was used to exclude dead cells. Individual cells were sorted, using a Becton Dickinson Influx sorter with 488- and 561 nm lasers (Schulte et al., 2015) and collected in a single well of a 96 well plate containing 2.3 uL of 0.2 % Triton X-100 supplemented with 1 U/uL SUPERase In RNAse inhibitor (Ambion). The size, granularity and level of fluorescence for each cell were simultaneously recorded. The Smart-seq2 protocol (Picelli et al., 2014) was used to amplify the whole transcriptome and prepare libraries. Twenty-five cycles of PCR amplification were performed.

text: adult

characteristic: developmental stage

text: heterozygote Tg(lck:EGFP)

characteristic: genotype

characteristic: individual

text: Danio rerio

text: Danio rerio

text: spleen

characteristic: organism part

characteristic: plate

text: Danio rerio

text: good quality

characteristic: single cell well quality

characteristic: well

text: bulk cell control

characteristic: well information


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ludwig Center for Cancer Research, University of Lausanne, Lausanne, Switzerland Swiss Institute of Bioinformatics

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: zebrafish

text: adult

text: heterozygote Tg(lck:EGFP)

text: Danio rerio

characteristic: organism

text: Danio rerio

text: spleen

text: Danio rerio

text: good quality

characteristic: title

text: bulk cell control


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: PI fluorescence

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: forward scatter

text: heterozygote Tg(lck:EGFP)

characteristic: gfp fluorescence

text: Danio rerio

text: Danio rerio

text: spleen

text: Danio rerio

characteristic: side scatter

text: good quality

text: bulk cell control


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: zebrafish

text: adult

characteristic: developmental stage

text: heterozygote Tg(lck:EGFP)

characteristic: genotype

characteristic: individual

text: Danio rerio

text: Danio rerio

characteristic: plate

text: Danio rerio

text: good quality

characteristic: single cell well quality

characteristic: well

text: negative control

characteristic: well information


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: PI fluorescence

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: adult

text: heterozygote Tg(lck:EGFP)

text: Danio rerio

characteristic: organism

text: Danio rerio

text: spleen

characteristic: organism part

text: Danio rerio

text: good quality

characteristic: title

text: single cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: not available

text: ArrayExpress

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: not available

characteristic: forward scatter

text: heterozygote Tg(lck:EGFP)

characteristic: genotype

text: not available

characteristic: gfp fluorescence

characteristic: individual

text: Danio rerio

text: Danio rerio

text: spleen

text: Danio rerio

text: not available

characteristic: side scatter

text: good quality

text: single cell


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


E-MTAB-5080:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UZH

text: public

text: E-MTAB-5080:Sample 1

text: 0 to 6

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house fly

text: Protocols: All strains are described in {Dubendorfer:2002uz}{Scott:2014gi}{Schmidt:1997tw} and were cultured at 25°C in beakers filled with 140g food-mixture (150g flour, 50g yeast, 120g milk powder, 1000g bran) dissolved in 185ml water and 4ml Nipagin (66g Nipagin, 123g Nipasol in 2l of 96% Ethanol) until hatching and then transferred to cages at room temperature (RT) or kept in beakers at 18°C . Rearing of larvae and adult flies has been described in Schmidt et al, 1997. Since low density of larvae on standard medium can cause substantial decrease in survival rates, we reared injected embryos and the surviving larvae on porcine manure. To dispose of mites and other parasites and to avoid contamination with eggs or larvae from wild-type populations, manure was stored at -70° C for at least two weeks prior to use. Total RNA was prepared from 0-6 hrs and 1-8 hrs embryos with TRIzol reagent (Invitrogen) according to the manufacturer’s protocol. Libraries for sequencing were generated with the TruSeq RNA Sample Preparation kit (Illumina).

text: embryo

text: Musca domestica

characteristic: organism

text: Musca domestica

text: Musca domestica

text: male

characteristic: sex

text: Sample 1

characteristic: title


E-MTAB-5080:Sample 2

characteristic: External Id

text: UZH

text: public

text: E-MTAB-5080:Sample 2

text: 0 to 6

text: ArrayExpress

text: house fly

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: Musca domestica

text: Musca domestica

text: Musca domestica

text: female

text: Sample 2


E-MTAB-5080:Sample 3

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5080:Sample 3

text: 1 to 8

text: ArrayExpress

text: house fly

text: embryo

text: Musca domestica

text: Musca domestica

text: Musca domestica

text: male

text: Sample 3


E-MTAB-5080:Sample 4

text: UZH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5080:Sample 4

text: 1 to 8

text: ArrayExpress

text: house fly

text: embryo

text: Musca domestica

text: Musca domestica

text: Musca domestica

text: female

text: Sample 4


text: public

characteristic: SRA accession

tag: Namespace:THE ROSLIN INSTITUTE AND ROYAL (DICK) SCHOOL OF VETERINARY STUDIES

characteristic: Submitter Id

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Hot Water Supply

characteristic: isolation source

text: Legionella anisa

text: Legionella anisa

text: Legionella isolates linked to growing media samples


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: THE ROSLIN INSTITUTE AND ROYAL (DICK) SCHOOL OF VETERINARY STUDIES

text: public

text: United Kingdom

text: Patient

text: Legionella anisa

text: Legionella anisa


text: public

text: United Kingdom

text: Patient

text: Legionella longbeachae

characteristic: organism

text: Legionella longbeachae

characteristic: title


characteristic: External Id

text: public

text: United Kingdom

text: Compost

text: Legionella longbeachae

text: Legionella longbeachae


text: public

text: United Kingdom

text: Top soil

text: Legionella longbeachae

text: Legionella longbeachae


text: public

text: United Kingdom

text: Compost

text: unidentified

text: unidentified


text: public

text: New Zealand

text: Environmental compost

text: Legionella anisa

text: Legionella anisa


text: public

text: New Zealand

text: Patient

text: Legionella longbeachae

text: Legionella longbeachae


text: public

text: New Zealand

text: Patient

text: unidentified

text: unidentified


text: public

text: New Zealand

text: Environmental sump drain

text: Legionella longbeachae

text: Legionella longbeachae


text: public

text: New Zealand

text: Environmental compost

text: Legionella longbeachae

text: Legionella longbeachae


text: public

text: United Kingdom

text: Soil

text: Legionella longbeachae

text: Legionella longbeachae


text: public

text: United Kingdom

text: Legionella longbeachae

text: Legionella longbeachae


text: PUBLIC HEALTH ENGLAND

text: public

tag: Namespace:PUBLIC HEALTH ENGLAND

characteristic: broker name

characteristic: description

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC center name

text: public

text: GBR

text: Neisseria

characteristic: genus

characteristic: isolate

text: Neisseria meningitidis

text: Neisseria meningitidis

type: AMR curated data - CABBAGE

value: rifampin

value: susceptible

value: Neisseria meningitidis

value: penicillin

value: ciprofloxacin

value: chloramphenicol

value: cefotaxime


text: 29553330; 30687793; 32375989; 33770146

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

text: Neisseria

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: PUBLIC HEALTH ENGLAND

text: public

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: Neisseria

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: PUBLIC HEALTH ENGLAND

text: public

text: GBR

text: Neisseria

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: PUBLIC HEALTH ENGLAND

text: public

text: GBR

text: Neisseria

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: PUBLIC HEALTH ENGLAND

text: public

text: GBR

text: Neisseria

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: PUBLIC HEALTH ENGLAND

text: public

text: GBR

text: Neisseria

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UNIVERSITY OF ILLINOIS CHAMPAIGN-URBANA

text: public

tag: Namespace:UNIVERSITY OF ILLINOIS CHAMPAIGN-URBANA

text: pig

characteristic: common name

text: Hippocampal DNA methylation and gene transcription datasets from a 4 week old control piglet

text: Sus scrofa

text: Sus scrofa

text: Female

characteristic: sex

text: Hippocampus

characteristic: tissue type

text: Control Hippocampus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF ILLINOIS CHAMPAIGN-URBANA

text: public

text: pig

text: Hippocampal DNA methylation and gene transcription datasets from a 4 week old iron deficient piglet

text: Sus scrofa

text: Sus scrofa

text: Female

text: Hippocampus

text: Iron Deficient Hippocampus


characteristic: External Id

text: Dr.-Hans-Frisch-Str. 1-3

text: public

tag: Namespace:Dr.-Hans-Frisch-Str. 1-3

characteristic: collection date

text: uncultured microorganism

text: earthworm (Lumbricus terrestris) gut content

characteristic: isolation source

text: uncultured microorganism

characteristic: organism

text: uncultured microorganism

text: earthworm gut content

characteristic: title


text: Clostridium hastiforme

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC center name

text: public

text: Clostridium hastiforme

text: Tissierella praeacuta

text: Tissierella praeacuta

characteristic: strain


text: Helicobacter fennelliae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Helicobacter fennelliae

text: Helicobacter fennelliae

text: Helicobacter fennelliae


text: Wild type

characteristic: ArrayExpress-Phenotype

text: mixed

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: sample description

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BAYREUTH

text: public

tag: Namespace:UNIVERSITY OF BAYREUTH

characteristic: collection date

text: soil

characteristic: environment (biome)

text: agricultural soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: uncultured eukaryote

text: CCAGCASCYGCGGTAATTCC , ACTTTCGTTCTTGATYRA

characteristic: pcr primers

text: Oxygen shapes trophic interactions of a chitin-degrading soil microbiome

characteristic: project name

text: uncultured eukaryote

text: Illuminasequencing

characteristic: sequencing method


Euk-AnOxic-tEnd

text: UNIVERSITY OF BAYREUTH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Euk-AnOxic-tEnd

characteristic: Submitter Id

text: soil

text: agricultural soil

text: soil

text: Germany

text: mimarks-survey

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Illuminasequencing

text: Euk-AnOxic-tEnd

characteristic: title


Euk-Oxic-tEnd

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BAYREUTH

text: public

text: Euk-Oxic-tEnd

characteristic: collection date

text: soil

characteristic: environment (biome)

text: agricultural soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

text: mimarks-survey

text: uncultured eukaryote

text: uncultured eukaryote

text: Illuminasequencing

text: Euk-Oxic-tEnd


text: UNIVERSITY OF BAYREUTH

text: public

text: soil

text: agricultural soil

text: soil

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured microorganism

text: CGTGGACATCGACTGGGARTWYCC , CCCAGGCGCCGTAGARRTCRTARSWCA

characteristic: pcr primers

characteristic: project name

text: uncultured microorganism

text: Illuminasequencing

characteristic: sequencing method


text: UNIVERSITY OF BERN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF BERN

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: m

characteristic: sex

text: Brother_unaffected family member

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERN

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: m

text: Father_unaffected family member


text: UNIVERSITY OF BERN

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: f

text: Mother_unaffected family member


text: UNIVERSITY OF BERN

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: f


text: TGAC

text: public

text: green peach aphid

text: Myzus persicae

text: Myzus persicae

text: RNA extracted from 450 nymphs


text: public

tag: Namespace:Max-Planck-Institute for Molecular Biomedicine Department of Tissue Morphogenesis

text: ArrayExpress

characteristic: broker name

text: endothelial cell

characteristic: cell type

text: house mouse

text: Protocols: HA-tagged Mafb overexpressed MS1 ECs were cross-linked with 1% (wt/vol) formaldehyde for 10 minutes at room temperature and then added glycine to a final concentration of 0.15M. Chromatin was sonicated to an average fragment length of 150-250 bp using SFX250 digital sonifier (Branson) for 2 minutes: 0.7 second on / 1.3 second off on ice and immunoprecipitated with anti-HA antibody-conjugated magnetic beads (M180-11; MBL) overnight at 4°C. Following protein-DNA complex elution, samples were treated with RNaseA and proteinase K and incubated at 65°C overnight for reverse cross-linking. Immunoprecipitated DNA was purified using AMPure XP SPRI beads (Beckman Coulter). MS1 mouse pancreas ECs (CRL-2279; ATCC) were cultured in DMEM medium supplemented with 5% fetal calf serum (FCF) at 37°C and 5% CO2. HA-tagged Mafb construct was amplified by PCR, sub-cloned into pCR8/GW/TOPO (Invitrogen), and cloned with pLEX_307 (Addgene, #41392) by an LR recombination reaction. To produce lentiviruses, HEK293 cells were plated at a density of 8 x 106 per 10 cm dish. On the next day, the cells were transfected with 3μg of psPAX2 (Addgene, #12260), 1.5μg of pMD2.G (Addgene, #12259) and 4.5μg of lentiviral vector pLEX_307-HA-Mafb using 27μl Fugene 6 in 600µl Opti-MEM per dish. Virus-containing supernatants were collected at 24 hour, filtered through a 0.4-µm PVDF filter (Millipore), concentrated at 20,000 rpm for 2 hours using a optima L-100 XP ultracentrifuge (Beckman Coulter), re-suspended in knockout DMEM and then stored at -80°C until use. The lentivirus-infected cells were then subcultured and selected in puromycin (Sigma) or blasticidin (Calbiochem) to generate stable cell lines. Sequencing libraries were prepared with NEBNext Ultra DNA Library Prep Kit for Illumina (New England BioLabs)

characteristic: description

text: mouse postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: Max-Planck-Institute for Molecular Biomedicine Department of Tissue Morphogenesis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: endothelial cell

text: house mouse

text: mouse postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: endothelial cell

text: house mouse

text: Protocols: Mouse retinas were isolated, immersed in liquid nitrogen immediately to snap freeze, and stored at -80 °C for later use. We added 400μl of polysome buffer (50 mM Tris, pH 7.5, 100 mM KCl, 12 mM MgCl2, 1% Nonidet P-40, 1mM DTT, 200 U/ml RNasin, 1 mg/ml heparin, 100 μg/ml cyclohexamide, and 1x protease inhibitor mixture) to each sample and disrupted the tissue in 1.5 ml microcentrifuge tubes using pellet pestles (749540-0000; Kimble Chase). Postmitochondrial supernatant was formed by centrifugation for 10 minutes at 12,000 rpm at 4 °C and 10μl of the supernatant were saved for input. For IP against HA, we added 25μl of anti-HA antibody-conjugated magnetic beads (M180-11; MBL) to the retinal supernatant prior to incubation on an orbital shaker at 4°C overnight. IP beads were washed for four times with high-salt buffer (50 mM Tris, pH 7.5, 300 mM KCl, 12 mM MgCl2, 1% Nonidet P-40, 1mM DTT, and 100 μg/ml cyclohexamide) and resuspended in 350μl of RLT plus buffer plus β-mercaptoethanol. Total RNAs were extracted using RNeasy Micro kit (Qiagen) according to manufacturer’s instructions. RNA library construction was performed with the Illumina TruSeq Stranded Total RNA Sample Preparation Kit with Ribo-Zero (Illumina) according to the manufacturer’s instructions.

text: mouse postnatal

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: PHE

text: public

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes


text: she rong

text: public

tag: Namespace:she rong

characteristic: collection date

text: fish gut

characteristic: environment (biome)

text: fish gut

characteristic: environment (feature)

text: fish gut

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: fish gut metagenome

text: fish gut

characteristic: project name

text: fish gut metagenome

text: Miseq

characteristic: sequencing method

text: fish gut

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Institute of Biotechnology, Univerity of Helsinki

text: JC polyomavirus

text: JC polyomavirus

text: Distinct JC polyomavirus strains in patients with progressive multifocal leukoencephalopathy


text: Institute of Biotechnology, Univerity of Helsinki

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: JC polyomavirus

characteristic: organism

text: JC polyomavirus


text: SMU

text: public

text: Oral_microbiota_and_radiation-induced_mucositis

text: feces metagenome

text: feces metagenome

text: Oral microbiota and radiation-induced mucositis


text: Technische Universitat Munchen - WZW

text: public

tag: Namespace:Technische Universitat Munchen - WZW

text: Genome sequence of Candida glabrata, isolate FFUL887, which was found to be resistant to both fluconazole and voriconazole.

characteristic: description

characteristic: isolate

text: [Candida] glabrata

text: [Candida] glabrata

text: Genome sequence of Candida glabrata FFUL887


text: Trophozoite

characteristic: ArrayExpress-DevelopmentalStage

text: Plasmodium berghei

characteristic: ArrayExpress-Species

text: ANKA

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Plasmodium berghei

characteristic: common name

text: Plasmodium berghei

text: Serially blood passaged P.b ANKA host genetic background: Wild type C57 Bl/6

characteristic: sample description

text: Plasmodium berghei

text: ANKA

characteristic: strain

text: Plasmodium berghei


text: Trophozoite

text: Plasmodium berghei

text: ANKA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Mosquito transmitted P.b ANKA host genetic background: Wild type C57 Bl/6

text: Plasmodium berghei

text: ANKA

text: Plasmodium berghei

characteristic: title


text: Trophozoite

text: Plasmodium yoelii

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Plasmodium yoelii

text: Plasmodium yoelii

text: Serially blood passaged P.y 17XNL host genetic background: Wild type C57 Bl/6

text: Plasmodium yoelii

text: Plasmodium yoelii


text: Trophozoite

text: Plasmodium yoelii

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Plasmodium yoelii

text: Plasmodium yoelii

characteristic: organism

text: Mosquito transmitted P.y 17XNL host genetic background: Wild type C57 Bl/6

text: Plasmodium yoelii

text: Plasmodium yoelii


text: Plasmodium berghei

characteristic: ArrayExpress-Species

text: Anka

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Acute phase of infection host genetic background: Brown Norway rats

text: Plasmodium berghei

text: Anka


text: Plasmodium berghei

text: Anka

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Chronic phase of infection host genetic background: Brown Norway rats

text: Plasmodium berghei

text: Anka


text: Trophozoite

characteristic: ArrayExpress-DevelopmentalStage

text: Plasmodium chabaudi chabaudi

text: AS

text: SC

text: public

text: Plasmodium chabaudi chabaudi

characteristic: common name

text: Plasmodium chabaudi chabaudi

text: Serially blood passaged Pcc AShost genetic background: thicket rat

text: Plasmodium chabaudi chabaudi

text: AS

text: Plasmodium chabaudi chabaudi


text: Trophozoite

text: Plasmodium chabaudi chabaudi

text: AS

text: SC

text: public

text: Plasmodium chabaudi chabaudi

text: Plasmodium chabaudi chabaudi

text: Mosquito transmitted Pcc AShost genetic background: thicket rat

characteristic: sample description

text: Plasmodium chabaudi chabaudi

text: AS

characteristic: strain

text: Plasmodium chabaudi chabaudi


text: Trophozoite

text: Plasmodium chabaudi chabaudi

text: AS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Plasmodium chabaudi chabaudi

text: Plasmodium chabaudi chabaudi

text: Acute phase (MT) Pcc AShost genetic background: C3H/He

text: Plasmodium chabaudi chabaudi

text: AS

text: Plasmodium chabaudi chabaudi


text: Trophozoite

text: Plasmodium chabaudi chabaudi

text: CB

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Plasmodium chabaudi chabaudi

text: Plasmodium chabaudi chabaudi

text: Recrudescence (MT) Pcc CBhost genetic background: C57 Bl/6

text: Plasmodium chabaudi chabaudi

text: CB

text: Plasmodium chabaudi chabaudi

characteristic: title


characteristic: External Id

text: NORWEGIAN VETERINARY INSTITUTE

characteristic: INSDC center name

text: public

text: Atlantic salmon

text: Salmo salar

text: Salmo salar

text: Namsblank

text: Head kidney

characteristic: tissue type

text: Landlocked Atlantic salmon


text: Trophozoite

text: Plasmodium chabaudi chabaudi

text: AS

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Plasmodium chabaudi chabaudi

text: Plasmodium chabaudi chabaudi

text: Recrudescence (MT) Pcc AShost genetic background: C3H/He

text: Plasmodium chabaudi chabaudi

text: AS

text: Plasmodium chabaudi chabaudi


text: Trophozoite

text: Plasmodium chabaudi chabaudi

text: AS

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plasmodium chabaudi chabaudi

text: Plasmodium chabaudi chabaudi

characteristic: organism

text: Recrudescence, clone ahost genetic background: C57 Bl/6

text: Plasmodium chabaudi chabaudi

text: AS

text: Plasmodium chabaudi chabaudi


text: Trophozoite

characteristic: ArrayExpress-DevelopmentalStage

text: Plasmodium chabaudi chabaudi

characteristic: ArrayExpress-Species

text: AS

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Plasmodium chabaudi chabaudi

text: Plasmodium chabaudi chabaudi

text: Recrudescence, clone bhost genetic background: C57 Bl/6

text: Plasmodium chabaudi chabaudi

text: AS

text: Plasmodium chabaudi chabaudi


text: Plasmodium chabaudi chabaudi

text: AS

text: SC

text: public

text: Plasmodium chabaudi chabaudi

characteristic: common name

text: Plasmodium chabaudi chabaudi

text: Acute phase of infection host genetic background: Thicket rats

characteristic: sample description

text: Plasmodium chabaudi chabaudi

text: AS

characteristic: strain


text: Plasmodium chabaudi chabaudi

text: AS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Plasmodium chabaudi chabaudi

text: Plasmodium chabaudi chabaudi

text: Chronic phase of infection host genetic background: Thicket rats

text: Plasmodium chabaudi chabaudi

text: AS


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Institute of Plant Genetics, Polish Academy of Sciences

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Samples were collected from whole seedlings Plants were grown in 2 conditions: index5 - no vernalization, index6 - vernalization, 2 weeks cold and 7 days warm (21 deg C) The library was constructed by the 4C method (Splinter et al. 2012, Methods doi.org/10.1016/j.ymeth.2012.04.009; Hovel et al. 2012, Methods doi.org/10.1016/j.ymeth.2012.06.010)

characteristic: description

text: whole seedlings

characteristic: developmental stage

text: No vernalization

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

characteristic: title


text: Institute of Plant Genetics, Polish Academy of Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: whole seedlings

text: Vernalization

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: DUKE-NUS

text: public

text: P. aeruginosa strain with Tot1 terminator promoter in front of LasR

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


Plac

text: DUKE-NUS

text: public

text: Plac

text: P. aeruginosa strain with extra copy of LasR with Plac promoter

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Plac


text: UNIVERSITY OF BERN

text: public

text: pig

characteristic: common name

text: Sus scrofa

text: Sus scrofa

text: female

characteristic: sex

characteristic: specimen voucher


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF BERN

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: female

text: cDC2 _1297


text: Campylobacter jejuni

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Campylobacter jejuni


Test sample 1

text: Department of Immunology

text: public

text: Test sample 1

tag: Namespace:Department of Immunology

text: human

text: Test sample, do not use for analysis.

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: test-sample


tag: attribute

text: BANG

text: public

text: Heligmosomoides polygyrus bakeri

text: Heligmosomoides polygyrus bakeri

characteristic: title


text: Technische Universitat Munchen - WZW

characteristic: INSDC first public

text: public

text: Genetic diversity of Isolates of the rice pathogenic fungus Fusarium fujikuroi from different geographic origin (including one F. oxysporum strain as outgroup).

text: Fusarium fujikuroi

text: Fusarium fujikuroi

characteristic: strain

text: Comparative genomics of Fusarium fujikuroi strains


text: NIOO-KNAW

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

unit: m

characteristic: depth

text: terrestrial biome

characteristic: environment (biome)

text: grassland

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: CSE-PDL

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package


N

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: N

characteristic: Submitter Id

text: N

characteristic: description

text: terrestrial biome

text: grassland

text: soil

text: Netherlands

text: metagenome

text: soil metagenome

characteristic: organism

text: CSE-PDL

text: soil metagenome

text: Illumina

text: soil

text: N

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Department of Cell and Molecular Biology (CMB), Karolinska Institutet, Stockholm, Sweden.

unit: year

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Human primary islets were purchased from Prodo Laboratories Inc (Irvine, CA, USA) Qiagen RNeasy microkit with on-column DNAse digestion (Qiagen, Hombrechtikon, Swizerland) Illumina TruSeq Stranded mRNA Library prep kit following the manufacturer’s recommendations.

text: type 2 diabetes mellitus

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: islet of Langerhans

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Cell and Molecular Biology (CMB), Karolinska Institutet, Stockholm, Sweden.

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: islet of Langerhans

text: Homo sapiens

text: male


characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: islet of Langerhans

text: Homo sapiens

text: female


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: human

text: type 2 diabetes mellitus

text: Homo sapiens

text: Homo sapiens

text: islet of Langerhans

text: Homo sapiens

text: female

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: type 2 diabetes mellitus

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: islet of Langerhans

characteristic: organism part

text: Homo sapiens

text: male


E-MTAB-4948:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Shanghai Jiao Tong University

text: public

text: E-MTAB-4948:Sample 1

tag: Namespace:Shanghai Jiao Tong University

text: ArrayExpress

text: human

text: Protocols: Pleural effusion and peripheral blood samples were obtained from lung cancer patients in Shanghai Chest Hospital and Shanghai Municipal Hospital of Traditional Chinese Medicine with written informed consent. The clinical sample collection and experiment were carried out in accordance with guidelines and protocols that approved by the Ethics and Scientific Committees of both hospitals. Single candidate tumor cell whole genome amplification was conducted according to REPLI-g kit (Qiagen) protocol. In briefly, retrieved single cell into 4ul PBS by micromanipulation and added 3ul pre-prepared lysis buffer. Incubated for 10min at 65℃, neutralised reaction with adding 3ul stop solution. Added 29ul amplification buffer, 9ul deionized water and 1ul Phi29 DNA polymerase. Incubation at 30℃ for 8h and inactivation enzyme at 65℃ for 3 min. Amplified genomic DNA was then purified by Gel Extraction Kit (Qigen), and its concentration was determined by Nanodrop. 1ug of DNA amplifed from single cell random fragmented by dsDNA fragmentase (NEB). 150-500bp fragments were purified with Gel Extraction Kit (Qiagen). Applied NEBNext® Ultra End Repair/dA-Tailing Module kit to repair fragments ends and ligated to truncated PE P7 adaptors and barcoded P5 adaptors using NEB Next® Ultra Ligation Module kit. Purified products with Agencourt AMPure XP SPRI beads (Beckman Coulter), enriched the DNA fragments with adaptors by PCR. The coding exons captured with SureSelect All Exon V5 (Agilent Technologies) and posthybridization amplification following the manufacturer’s protocol. The whole exome sequencing was conducted on the Illumina HiSeqTM X Ten platform

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: pleura

text: Homo sapiens

text: Sample 1


E-MTAB-4948:Sample 2

text: Shanghai Jiao Tong University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-4948:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: human

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: pleura

text: Homo sapiens

text: Sample 2


E-MTAB-4948:Sample 3

text: Shanghai Jiao Tong University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4948:Sample 3

text: ArrayExpress

text: human

characteristic: description

text: lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pleura

text: Homo sapiens

text: Sample 3


E-MTAB-4948:Sample 4

text: Shanghai Jiao Tong University

text: public

text: E-MTAB-4948:Sample 4

text: ArrayExpress

characteristic: broker name

text: human

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: pleura

text: Homo sapiens

text: Sample 4

characteristic: title


E-MTAB-4948:Sample 5

text: Shanghai Jiao Tong University

text: public

text: E-MTAB-4948:Sample 5

text: ArrayExpress

text: human

characteristic: common name

text: lung carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pleura

text: Homo sapiens

text: Sample 5


E-MTAB-4948:Sample 6

text: Shanghai Jiao Tong University

text: public

text: E-MTAB-4948:Sample 6

text: ArrayExpress

text: human

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 6


characteristic: ENA-CHECKLIST

text: public

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: human

text: Protocols: Human primary islets (85-95% pure) were purchased from Prodo Laboratories Inc (Irvine, CA, USA) and cultured for 4 days in Prodo Islet Media Standard PIM(S) to recover after arrival. Islets were dissociated into single-cell suspension and viable individual cells were distributed by FACS into 384-well plates containing lysis buffer. Spike-in RNA from the External RNA Controls Consortium (ERCC) (Ambion, Life Technologies) was added to each well in 1:40 000 dilution. Single-cell RNA-seq libraries were generated as decribed in Picelli et al., 2014, Full-length RNA-seq from single cells using Smart-seq2, Nature Protocols.

text: normal

text: AZ

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: low quality cell

characteristic: single cell well quality


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ArrayExpress

text: delta cell

characteristic: cell type

text: human

text: normal

text: AZ

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: alpha cell

text: human

characteristic: description

text: normal

text: AZ

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: gamma cell

text: human

characteristic: common name

text: normal

characteristic: disease

text: AZ

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: ductal cell

text: human

text: normal

text: AZ

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: acinar cell

characteristic: cell type

text: human

characteristic: description

text: normal

text: AZ

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: ENA-CHECKLIST

text: public

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: beta cell

text: human

characteristic: common name

text: normal

characteristic: disease

text: AZ

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: unclassified endocrine cell

text: human

text: normal

text: AZ

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: co-expression cell

text: human

text: normal

text: AZ

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

text: public

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: MHC class II cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: AZ

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: PSC cell

text: human

text: normal

text: AZ

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: endothelial cell

text: human

text: normal

text: AZ

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: ENA-CHECKLIST

text: public

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: human

characteristic: common name

text: normal

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: low quality cell

characteristic: single cell well quality


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: beta cell

characteristic: cell type

text: human

characteristic: description

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: alpha cell

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: acinar cell

text: human

characteristic: common name

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: delta cell

characteristic: cell type

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: unclassified endocrine cell

text: human

characteristic: description

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: ENA-CHECKLIST

text: public

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: gamma cell

text: human

characteristic: common name

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: ductal cell

characteristic: cell type

text: human

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: epsilon cell

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

text: public

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: co-expression cell

text: human

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: PSC cell

characteristic: cell type

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: endothelial cell

text: human

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: ENA-CHECKLIST

text: public

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: mast cell

text: human

characteristic: common name

text: normal

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: description

text: type II diabetes mellitus

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: control, empty well


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: acinar cell

characteristic: cell type

text: human

text: type II diabetes mellitus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: human

text: type II diabetes mellitus

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: low quality cell


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: alpha cell

text: human

characteristic: common name

text: type II diabetes mellitus

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: gamma cell

characteristic: cell type

text: human

characteristic: description

text: type II diabetes mellitus

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: delta cell

text: human

text: type II diabetes mellitus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: unclassified endocrine cell

text: human

characteristic: common name

text: type II diabetes mellitus

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: beta cell

characteristic: cell type

text: human

text: type II diabetes mellitus

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: ductal cell

text: human

characteristic: description

text: type II diabetes mellitus

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: endothelial cell

text: human

characteristic: common name

text: type II diabetes mellitus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: co-expression cell

characteristic: cell type

text: human

text: type II diabetes mellitus

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: PSC cell

text: human

text: type II diabetes mellitus

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: unclassified cell

text: human

characteristic: common name

characteristic: description

text: type II diabetes mellitus

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: epsilon cell

characteristic: cell type

text: human

text: type II diabetes mellitus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: human

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: control, empty well


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: delta cell

text: human

characteristic: common name

text: normal

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

characteristic: description

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: low quality cell


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: alpha cell

characteristic: cell type

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: beta cell

text: human

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: PSC cell

text: human

characteristic: common name

text: normal

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: endothelial cell

characteristic: cell type

text: human

characteristic: description

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: gamma cell

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: co-expression cell

text: human

characteristic: common name

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: ductal cell

characteristic: cell type

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: epsilon cell

text: human

characteristic: description

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: unclassified cell

text: human

characteristic: common name

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: unclassified endocrine cell

characteristic: cell type

text: human

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: acinar cell

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: OK

characteristic: single cell well quality


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: female

text: control, empty well


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: female

text: low quality cell

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: ductal cell

characteristic: cell type

text: human

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: female

text: OK


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: unclassified endocrine cell

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: female

characteristic: sex

text: OK

characteristic: single cell well quality