characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age unit

text: smaug.oral

characteristic: anonymized name

text: UBERON:oral cavity

characteristic: body habitat

text: UBERON:saliva

characteristic: body product

text: UBERON:tongue

characteristic: body site

text: 2012-10-16 00:00:00

characteristic: depth

text: smaug.oral

characteristic: description

text: True

text: Smaug

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:saliva

text: host-associated

text: USA:TX:Houston

text: Komodo Dragon

text: Varanus komodoensis

text: oral metagenome

characteristic: organism

text: UCSDMI

text: False

text: Houston Zoo

characteristic: provenance

text: True

text: completed

text: Animal secretion

text: oral metagenome

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: smaug.skin

text: UBERON:shoulder skin

text: UBERON:sebum

text: UBERON:skin

text: 2012-10-16 00:00:00

text: smaug.skin.above.right.shoulder

text: True

text: Smaug

characteristic: elevation

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: host-associated

characteristic: env package

text: USA:TX:Houston

characteristic: geo loc name

text: Komodo Dragon

characteristic: host common name

text: Varanus komodoensis

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: skin metagenome

text: UCSDMI

text: False

text: Houston Zoo

text: True

characteristic: public

text: completed

text: Animal surface

characteristic: sample type

text: skin metagenome

text: Development of the oral microbiota in captive Komodo Dragons (Varanus komodoensis)

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2012-08-16 00:00:00

characteristic: depth

text: szelma.fecal

characteristic: description

text: True

text: Szelma

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

text: host-associated

text: USA:CA:Los Angeles

text: Komodo Dragon

text: Varanus komodoensis

text: gut metagenome

characteristic: organism

text: UCSDMI

text: False

text: Los Angeles Zoo

characteristic: provenance

text: True

text: completed

text: Animal distal gut

text: gut metagenome

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_1747:1747.szelma.992677.saliva

text: years

text: UBERON:oral cavity

text: UBERON:saliva

text: UBERON:tongue

text: 2012-08-16 00:00:00

text: szelma.saliva

text: True

text: Szelma

characteristic: elevation

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:saliva

characteristic: env matter

text: host-associated

characteristic: env package

text: USA:CA:Los Angeles

characteristic: geo loc name

text: Komodo Dragon

characteristic: host common name

text: Varanus komodoensis

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: oral metagenome

text: UCSDMI

text: False

text: Los Angeles Zoo

text: True

characteristic: public

text: completed

text: Animal secretion

characteristic: sample type

text: oral metagenome

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin

characteristic: body site

text: 2012-08-16 00:00:00

characteristic: depth

text: szelma.skin

characteristic: description

text: True

text: Szelma

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:sebum

text: host-associated

text: USA:CA:Los Angeles

text: Komodo Dragon

text: Varanus komodoensis

text: skin metagenome

characteristic: organism

text: UCSDMI

text: False

text: Los Angeles Zoo

characteristic: provenance

text: True

text: completed

text: Animal surface

text: skin metagenome

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2013-01-16 00:00:00

characteristic: date of birth

text: V. indicus cage 58 fecal

text: True

characteristic: elevation

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:feces

characteristic: env matter

text: host-associated

characteristic: env package

text: USA:CO:Greeley

characteristic: geo loc name

text: Varanus Indicus

characteristic: host common name

text: Varanus indicus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: UCSDMI

text: False

text: Greeley

text: True

characteristic: public

text: completed

text: Animal secretion

characteristic: sample type

text: gut metagenome

text: cage 58


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:oral cavity

characteristic: body habitat

text: UBERON:saliva

characteristic: body product

text: UBERON:mouth

characteristic: body site

text: 2013-01-16 00:00:00

characteristic: depth

text: V. indicus cage 58 oral

characteristic: description

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:saliva

text: host-associated

text: USA:CO:Greeley

text: Varanus Indicus

text: Varanus indicus

text: oral metagenome

characteristic: organism

text: UCSDMI

text: False

text: Greeley

characteristic: provenance

text: True

text: completed

text: Animal secretion

text: oral metagenome

characteristic: title

text: cage 58


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

text: public

text: years

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin

text: 2013-01-16 00:00:00

characteristic: date of birth

text: V. indicus case 58 skin

text: True

characteristic: elevation

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:sebum

characteristic: env matter

text: host-associated

characteristic: env package

text: USA:CO:Greeley

characteristic: geo loc name

text: Varanus Indicus

characteristic: host common name

text: Varanus indicus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: skin metagenome

text: UCSDMI

text: False

text: Greeley

text: True

characteristic: public

text: completed

text: Animal surface

characteristic: sample type

text: skin metagenome

text: cage 58


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1747:1747.v.rudicollis.44.fecal

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2013-01-16 00:00:00

characteristic: depth

text: V. rudicollis cage 44 fecal

characteristic: description

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:feces

text: host-associated

text: USA:CO:Greeley

text: Varanus Rudicollis

text: Varanus rudicollis

text: gut metagenome

characteristic: organism

text: UCSDMI

text: False

text: Greeley

characteristic: provenance

text: True

text: completed

text: Animal distal gut

text: gut metagenome

characteristic: title

text: cage 44


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

text: public

text: qiita_sid_1747:1747.v.rudicollis.44.oral

text: years

text: UBERON:oral cavity

text: UBERON:saliva

text: UBERON:mouth

text: 2013-01-16 00:00:00

characteristic: date of birth

text: V. rudicollis cage 44 oral

text: True

characteristic: elevation

text: ENVO:urban biome

characteristic: env biome

text: ENVO:animal-associated habitat

characteristic: env feature

text: ENVO:saliva

characteristic: env matter

text: host-associated

characteristic: env package

text: USA:CO:Greeley

characteristic: geo loc name

text: Varanus Rudicollis

characteristic: host common name

text: Varanus rudicollis

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: oral metagenome

text: UCSDMI

text: False

text: Greeley

text: True

characteristic: public

text: completed

text: Animal secretion

characteristic: sample type

text: oral metagenome

text: cage 44


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1747:1747.v.rudicollis.44.skin

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin

characteristic: body site

text: 2013-01-16 00:00:00

characteristic: depth

text: V. rudicollis cage 44 skin

characteristic: description

text: True

text: ENVO:urban biome

text: ENVO:animal-associated habitat

text: ENVO:sebum

text: host-associated

text: USA:CO:Greeley

text: Varanus Rudicollis

text: Varanus rudicollis

text: skin metagenome

characteristic: organism

text: UCSDMI

text: False

text: Greeley

characteristic: provenance

text: True

text: completed

text: Animal surface

text: skin metagenome

characteristic: title

text: cage 44


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEBITEC

characteristic: INSDC first public

text: public

characteristic: collection date

text: Draft genome sequence of Xanthomonas bromi LMG947

text: grass

characteristic: environment (biome)

text: Bromus carinatus

characteristic: environment (feature)

text: Bromus carinatus

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: isolate

text: Xanthomonas bromi

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: Xanthomonas bromi

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF TECHNOLOGY, SYDNEY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF TECHNOLOGY, SYDNEY

characteristic: Submitter Id

text: Here we examined patterns of proteorhodopsin containing bacteria and Archaea (PRBA) along the east coast of Australia. Surface seawater samples were collected at monthly intervals over a period of 12 months from 3 oceanographic time-series sites spanning 15° of latitude, and an amplicon sequencing approach was used to characterise the composition and diversity of proteorhopsin containing bacteria.

characteristic: description

text: ocean

text: coastal water

text: water

text: Australia

unit: m

characteristic: geographic location (depth)

text: 34.1192° S

text: 151.2267° E

text: metagenome

text: marine metagenome

characteristic: organism

text: AMMBI

text: marine metagenome

text: Miseq illumina

text: proteorhodopsin within Australia aquatic ecosystems

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

characteristic: INSDC first public

text: public

tag: Namespace:INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

characteristic: collection date

text: Real-time species typing and analysis of antibiotic resistance potential using Nanopore MinION sequencing

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: human

characteristic: host scientific name

text: clinical

text: human urine

characteristic: isolation source

text: mixed sample

text: mixed sample

text: FDA strain Seattle 1946 [DSM 1103, NCIB 12210]; Rosenbach, Seattle 1945

characteristic: serovar

text: Escherichia coli ATCC-25922; Staphylococcus aureus supse. aureus ATCC-25923

characteristic: strain

text: MinION mixture sequencing E. coli and S. aureus


characteristic: ENA-CHECKLIST

text: INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MiSEQ Sequencing three samples of Klebsiella pneumoniae.

text: USA

text: not provided

text: human

text: clinical

characteristic: isolate

text: human urine

text: Klebsiella pneumoniae ATCC BAA-2146

text: Klebsiella pneumoniae ATCC BAA-2146

text: K6 [CCUG 45421, LMG 20218, MCV37]

text: ATCC BAA-2146

text: MiSEQ Sequencing Klebsiella pneumoniae


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

text: public

characteristic: description

text: USA

text: not provided

text: human

text: clinical

text: human urine

text: Klebsiella pneumoniae 700603

characteristic: organism

text: Klebsiella pneumoniae 700603

text: 1000527, 7561

text: MiSEQ Sequencing Klebsiella pneumoniae 700603

characteristic: title


characteristic: External Id

text: INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

characteristic: INSDC first public

text: public

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: human

text: clinical

text: human urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: NCTC 9633 [NCDC 298-53, NCDC 410-68]

text: ATCC 13883

text: MiSEQ Sequencing Klebsiella pneumoniae ATCC 13883


characteristic: ENA-CHECKLIST

text: UNIBE-IG

text: public

text: cattle

characteristic: common name

text: belted

text: Bos taurus

text: Bos taurus

text: Belted Galloway


text: UNIBE-IG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: cattle

text: solid colored

text: Bos taurus

text: Bos taurus

text: Galloway


text: UNIBE-IG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: cattle

text: belted

text: Bos taurus

text: Bos taurus

text: Brown Swiss


text: UNIBE-IG

text: public

characteristic: Submitter Id

text: cattle

text: belt

text: Bos taurus

text: Bos taurus

text: Belted Galloway


characteristic: ENA-FIRST-PUBLIC

text: UNIBE-IG

text: public

text: cattle

text: belt

text: Bos taurus

text: Bos taurus

text: Brown Swiss


characteristic: ENA-LAST-UPDATE

text: UNIBE-IG

text: public

text: cattle

text: healthy control (solid brown)

text: Bos taurus

text: Bos taurus

text: Brown Swiss


Xiangxi River 1

text: Freshshwater Ecology

text: public

text: Xiangxi River 1

tag: Namespace:Freshshwater Ecology

text: backwater site

characteristic: description

text: water bacterioplankton

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

characteristic: geographic location (depth)

text: 31 N

characteristic: geographic location (latitude)

text: 110 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: Plankton metagenome of Xiangxi River

characteristic: project name

text: metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


Xiangxi River 2

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Freshshwater Ecology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Xiangxi River 2

characteristic: collection date

text: backwater site

text: water bacterioplankton

text: river

text: water

text: China

characteristic: geographic location (country and/or sea)

text: 31 N

text: 110 E

text: metagenome

text: metagenome

characteristic: organism

text: Plankton metagenome of Xiangxi River

text: metagenome

text: Illumina HiSeq

characteristic: title

text: water


Xiangxi River 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Freshshwater Ecology

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Xiangxi River 3

characteristic: Submitter Id

text: backwater site

characteristic: description

text: water bacterioplankton

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

text: 31 N

text: 110 E

text: metagenome

text: metagenome

text: Plankton metagenome of Xiangxi River

text: metagenome

text: Illumina HiSeq

text: WJB

text: water


Xiangxi River 4

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Freshshwater Ecology

text: public

text: Xiangxi River 4

text: riverine site

text: water bacterioplankton

text: river

text: water

text: China

characteristic: geographic location (depth)

text: 31 N

characteristic: geographic location (latitude)

text: 110 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: Plankton metagenome of Xiangxi River

characteristic: project name

text: metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


Xiangxi River 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Freshshwater Ecology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Xiangxi River 5

characteristic: collection date

text: riverine site

text: water bacterioplankton

text: river

text: water

text: China

characteristic: geographic location (country and/or sea)

text: 31 N

text: 110 E

text: metagenome

text: metagenome

characteristic: organism

text: Plankton metagenome of Xiangxi River

text: metagenome

text: Illumina HiSeq

characteristic: title

text: water


Xiangxi River 6

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Freshshwater Ecology

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Xiangxi River 6

characteristic: Submitter Id

text: riverine site

characteristic: description

text: water bacterioplankton

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

text: 31 N

text: 110 E

text: metagenome

text: metagenome

text: Plankton metagenome of Xiangxi River

text: metagenome

text: Illumina HiSeq

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GENEVA UNIVERSITY HOSPITALS

text: public

tag: Namespace:GENEVA UNIVERSITY HOSPITALS

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa genome


Elizabethkingia anophelis DSM-23781

text: JUSTUS LIEBIG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Elizabethkingia anophelis DSM-23781

tag: Namespace:JUSTUS LIEBIG UNIVERSITY

text: Elizabethkingia anophelis DSM2-3781

text: Elizabethkingia anophelis

text: Elizabethkingia anophelis

text: Elizabethkingia anophelis DSM-23781


Elizabethkingia endophytica JM-87

text: JUSTUS LIEBIG UNIVERSITY

characteristic: INSDC last update

text: public

text: Elizabethkingia endophytica JM-87

text: Elizabethkingia endophytica JM-87

text: Elizabethkingia endophytica

text: Elizabethkingia endophytica

text: Elizabethkingia endophytica JM-87


text: public

tag: Namespace:Leibniz Institute for freshwater ecology and inland fisheries

characteristic: collection date

characteristic: depth

text: Lake sediment

text: sediment

text: sediment

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: 53.1520 N

characteristic: geographic location (latitude)

text: 13.0233 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Achromatium oxaliferum

text: Lake Stechlin Achromatium

characteristic: project name

text: Achromatium oxaliferum

text: sediment

characteristic: sediment environmental package

text: Illumina

characteristic: sequencing method

text: Lake Stechlin Achromatium


Elizabethkingia meningoseptica CCUG 214

characteristic: ENA-CHECKLIST

characteristic: External Id

text: JUSTUS LIEBIG UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Elizabethkingia meningoseptica CCUG 214

characteristic: Submitter Id

text: Elizabethkingia meningoseptica CCUG 214

characteristic: description

text: Elizabethkingia meningoseptica

characteristic: organism

text: Elizabethkingia meningoseptica

text: Elizabethkingia meningoseptica CCUG 214

characteristic: title


Elizabethkingia miricola KCTC 12492

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: JUSTUS LIEBIG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Elizabethkingia miricola KCTC 12492

text: Elizabethkingia miricola KCTC 12492

text: Elizabethkingia miricola

text: Elizabethkingia miricola

text: Elizabethkingia miricola KCTC 12492


text: CEBITEC

text: public

characteristic: collection date

text: Draft genome of Streptococcus pneumoniae isolate 27700

text: human

characteristic: environment (biome)

text: Blood

characteristic: environment (feature)

text: Blood

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

characteristic: investigation type

characteristic: isolate

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CEBITEC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Draft genome of Streptococcus pneumoniae isolate 28838

characteristic: description

text: human

text: CSF

text: CSF

text: Germany

text: human-associated

text: mimarks-survey

text: Streptococcus pneumoniae

characteristic: organism

characteristic: project name

text: Streptococcus pneumoniae

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CEBITEC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Draft genome of Streptococcus pneumoniae isolate 38301

text: human

characteristic: environment (biome)

text: Nasopharynx

characteristic: environment (feature)

text: Nasopharynx

text: Germany

text: human-associated

text: mimarks-survey

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CEBITEC

text: public

text: Draft genome of Streptococcus pneumoniae isolate 40086

text: human

text: Nasopharynx

text: Nasopharynx

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

characteristic: investigation type

characteristic: isolate

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Illumina MiSeq


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CEBITEC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Draft genome of Streptococcus pneumoniae isolate 42538

characteristic: description

text: human

text: wound

text: wound

text: Germany

text: human-associated

text: mimarks-survey

text: Streptococcus pneumoniae

characteristic: organism

characteristic: project name

text: Streptococcus pneumoniae

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: External Id

text: EM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Guillaume Minard

characteristic: collected by

text: Viet Nam

text: Binh Phuoc (N12°6’42’’; E107°9’29’’ according to the World Geodetic System 1984)

characteristic: geographic location (region and locality)

text: Guillaume Minard

characteristic: identified by

text: 16S rDNA from the midgut of Aedes sp.

characteristic: note

text: unidentified

text: unidentified

text: midgut

characteristic: tissue type

text: Identification of sympatric cryptic species of Aedes albopictus subgroup in Vietnam: new perspectives in phylosymbiosis of insect vector

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Leibniz Institute for freshwater ecology and inland fisheries

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

characteristic: depth

text: Lake Sediment

characteristic: environment (biome)

text: sediment

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: 53.1520 N

characteristic: geographic location (latitude)

text: 13.0233 E

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Achromatium oxaliferum

text: Lake Stechlin Achromatium

text: Achromatium oxaliferum

text: sediment

characteristic: sediment environmental package

text: illumina

text: Lake Stechlin Achromatium


characteristic: ENA-CHECKLIST

characteristic: External Id

text: GENEVA UNIVERSITY HOSPITALS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: Deep sequencing of Pseudomonas aeruginosa populations


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GENEVA UNIVERSITY HOSPITALS

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 140331_SN1126_A_L001_HAK-112_R1140331_SN1126_A_L001_HAK-112_R1.fastq

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: title


text: WDRC KAUST

text: public

tag: Namespace:WDRC KAUST

characteristic: collection date

characteristic: common name

text: Sludge

characteristic: environment (biome)

text: MBR

characteristic: environment (feature)

text: Wastewater

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: MBR-Pathogen-Effluent

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: External Id

text: NEIKER TECNALIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:NEIKER TECNALIA

text: soil metagenome

characteristic: depth

text: Soil

text: Grassland

text: Soil

text: Spain

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

text: SoilMontana

text: soil metagenome

text: MiSeq

text: soil

characteristic: soil environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: JLU

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Probiotic Enterococcus faecalis Symbioflor 1 Clones

characteristic: description

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: JLU

characteristic: INSDC center name

text: public

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Enterococcus faecalis Symbioflor 1 Clones


characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Department of Biochemistry and Molecular Biology University of Southern Denmark

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Protocols: The following C. elegans strains were obtained from the Caenorhabditis Genetic Center, funded by the NIH Office of Research Infrastructure Programs (P40 OD010440): N2 Bristol wild type, DA1116 (eat-2(ad1116)II), MQ887(isp-1(qm150)IV), RB754 (aak-2(ok524)X), VC222 (raga-1(ok386)II), and RB1206 (rsks-1(ok1255)III), (three latter strains made by groups part of the International C. elegans Knockout Consortium). The generation of the CA AMPK strain was previously described 22,38 . CF1038 (daf-16(mu86)I) and CF1041 (daf-2(e1370)III) were obtained from the Kenyon lab via the Dillin lab. The SS104 (glp-4(bn2)) strain was a gift from K. Blackwell lab. The splicing reporter strain KH2235 (lin-15(n765)ybIs2167[eft-3::ret-1E4E5(+1)E6-GGS6-mCherry+eft-3::ret-1E4E5(+1)E6(+2) GGS6-EGFP+lin-15(+)+pRG5271Neo]X) was a gift from Hidehito Kuroyanagi. The inverted splicing reporter WBM535 was made by injecting modified minigene reporter plasmids into N2 worms. The plasmids were made by deleting the (+2) frameshift in the EGFP minigene and inserting a (+2) frameshift into the mCherry minigene. Worms were grown and maintained on standard nematode growth media (NGM) seeded with E. coli (OP50-1). E. coli bacteria were cultured overnight in LB at 37°C, after which 100 μl of liquid culture was seeded on plates to grow for 2 days at room temperature. All RNAi constructs came from the Ahringer RNAi library, except hrp-2 and hrpf-1 RNAi constructs, which originated from the Vidal RNAi library. RNAi experiments were carried out using E.coli HT115 bacteria on standard NGM plates containing 100μg/ml Carbenicillin. HT115 bacteria expressing RNAi constructs were grown overnight in LB supplemented with 100μg/ml Carbenicillin and 12.5μg/ml Tetracycline. NGM plus Carbenicillin plates were seeded 48 hours before use. Respective dsRNA expressing HT115 bacteria were induced by adding 100μl IPTG (100mM) one hour before introducing worms to the plate. RNAi was induced for all experiments from egg hatch. Total RNA was extracted using Qiazol reagent (QIAGEN), column purified by RNeasy mini kit (QIAGEN) according to manufacturer’s instructions. cDNA was synthesized using Quantitect Reverse Transcriptase kit (QIAGEN). cDNA libraries were prepared from 1μg total RNA using TruSeq RNA Sample preparation v2 kit (Illumina).

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: empty vector

characteristic: rna interference

text: Caenorhabditis elegans

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: Department of Biochemistry and Molecular Biology University of Southern Denmark

text: public

text: ArrayExpress

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: empty vector

text: Caenorhabditis elegans


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: public

characteristic: INSDC status

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: HeLa cells were grown in RPMI1640 supplemented with 10% FCS, glutamine and penicillin/streptomycin. The cells were reverse transfected using RNAiMAX (ThermoFisher Scientific) and siRNAs targeting SF1 (L-012662-01-0020, Dharmacon) or non-targeting siRNAs (D-001810-10-20) as control. After 24 hours, cells were re-transfected using the forward transfection protocol and 48 hours later harvested for RNA and protein. Total RNA was isolated using Isol-RNA lysis reagent (5 PRIME). RNA purity, integrity and concentration were determined using an Agilent 2100 Bioanalyzer (Agilent Technologies, Inc, USA). Only RNA with a RIN value of 8.0 or higher and a ratio (28s/18s) of above 1.8 was taken forward for sample preparation. Samples were processed for library constructions following the manufactory instructions (Illumina Tru Seq Stranded Total RNA sample preparation v2 Guide, Part #15031048 Rev.E October 2013 - “Low sample protocol”). In brief, 0.5 μg of total RNA from each tissue were depleted for cytoplasmic rRNA using the Ribo-Zero ribosomal reduction chemistry, chemically fragmented for 8 min at 94oC, and processed for 1st strand synthesis cDNA and then 2nd strand synthesis using dUTP instead of dTTP. After some purification steps, the cDNA was then end-repaired, purified, adenylated at the 3’-ends, and purified before adding the indexed adaptor sequences using the TruSeq Stranded LT Kit Index set A. Each library preparation was then enriched by 10 cycles of PCR, purified and finally validated in regards to size and concentration. For sizing, libraries were analyzed on the Agilent 2100 Bioanalyzer using a DNA 1000 kit from Agilent Technologies. The Libraries were quantified by qPCR using the KaPa Library quantification Kits (KaPa Biosystems, Cat KK4824).

text: Homo sapiens

text: Homo sapiens

text: non-targeting

text: Homo sapiens

text: HeLa


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: HeLa


text: ROBERT KOCH-INSTITUTE

text: public

tag: Namespace:ROBERT KOCH-INSTITUTE

text: Tai Health Consortium

characteristic: collected by

text: May 2008

characteristic: collection date

text: Cote d'Ivoire

characteristic: geographic location (country and/or sea)

text: Tai National Park

characteristic: geographic location (region and locality)

text: Pan troglodytes

characteristic: host

text: Bacillus cereus biovar anthracis

characteristic: organism

text: Bacillus cereus biovar anthracis


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

text: Pan troglodytes

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

text: Tai Health Consortium

text: Dec 2008

text: Cote d'Ivoire

text: Tai National Park

text: Pan troglodytes

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

text: public

characteristic: INSDC status

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

text: Cephalophus sp.

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

text: public

characteristic: SRA accession

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

text: Calliphoridae

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

text: public

characteristic: Submitter Id

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

text: Cercocebus atys

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

text: public

text: Tai Health Consortium

characteristic: collected by

text: Cote d'Ivoire

text: Tai National Park

text: Cercopithecus diana

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

text: public

text: Tai Health Consortium

characteristic: collection date

text: Cote d'Ivoire

text: Tai National Park

text: Herpestidae

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

text: public

text: Tai Health Consortium

text: Cote d'Ivoire

characteristic: geographic location (country and/or sea)

text: Tai National Park

text: Procolobus badius

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

text: public

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

characteristic: geographic location (region and locality)

text: Cercopithecus campbelli

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

text: public

text: PanAf Consortium

text: Liberia

text: Grebo

text: Calliphoridae

characteristic: host

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

text: public

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

text: Colobus polycomos

text: Bacillus cereus biovar anthracis

characteristic: organism

text: Bacillus cereus biovar anthracis


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

text: public

text: Tai Health Consortium

text: October 2013

text: Cote d'Ivoire

text: Tai National Park

text: Cephalophus sp.

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

text: public

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

text: Cercopithecus petaurista

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

text: public

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

text: Colobus sp.

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis


text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

text: public

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

text: Pan troglodytes

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis

text: Ca


text: ROBERT KOCH-INSTITUTE

characteristic: INSDC last update

text: public

text: Tai Health Consortium

text: Cote d'Ivoire

text: Tai National Park

text: Pan troglodytes

text: Bacillus cereus biovar anthracis

text: Bacillus cereus biovar anthracis

text: CIRef


text: GIS

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Total RNAs were isolated from either hMLOs, 2D-DA neurons, or undifferentiated hESCs using TRIzol Reagent (Invitrogen). DNA contaminants were digested with DNASE I (Ambion). DA neuron differentiation was performed follow floor-plate based neural induction protocol (Kriks et al., 2011). The hESCs were plated at 35 x 103 cells per cm2 and grown on matrigel in Basal medium 1 containing DMEM, 15% KSR, 2mM L-Glutamine and 10μM β-mercaptoethanol, with addition of 100nM LDN193189 (Stemgent) and 10μM SB431542 for 24 h. On day 1, medium was changed to Basal Medium 1 with addition of 100nM LDN193189, 10μM SB431542, 100ng/ml SHH-C25II, 2μM Purmorphamine (Stemgent) and 100ng/ml FGF8 for 2 days. On day 3, medium was changed with addition of 3μM CHIR99021. By day 5, medium was gradually shifted to N2 medium containing DMEM, N2 supplement, 2mM L-Glutamine and 10μM β-mercaptoethanol (Basal Medium 2) for 2 days interval as described previously (Chambers et al., 2009). On day 11 onwards, Basal medium 3 containing Neurobasal/B27/L-Glutamine (Invitrogen) was changed supplemented with 3μM CHIR99021 for 2 days. After which, Basal medium 3 supplemented with 10μM DAPT (Sigma-Aldrich), 0.2mM Ascorbic acid, 20ng/ml BDNF, 20ng/ml GDNF, 0.2mM db-cAMP and 1ng/ml TGF-β3 (Invitrogen) was used until day 20, media were changed every other day. On day 20, cells were dissociated using 0.05% Trypsin-EDTA and replated under high cell density (300 - 400 x 103 cells per cm2) on dishes pre-coated with 0.1mg/ml poly-lysine and 1μg/ml Laminin. Cells were grown in Neurobasal/B27 medium containing 10μM DAPT, 0.2mM Ascorbic acid, 20ng/ml BDNF, 20ng/ml GDNF, 0.2mM db-cAMP and 1ng/ml TGF-β3, and changed fresh medium every other day until experimental analysis as indicated. For RNA-seq library preparation of hMLOs and 2D-DA neurons, the total RNA was further purified by column (Puelink RNA Mini kit, Ambion), and was prepared using 4μg of total RNA according to manufacturer’s protocol (TruSeq RNA Sample Preparation Kit v2, Illumina). Samples were multiplexed and sequenced single read 150bp paired end (HiSeq 2000, Illumina).

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: cell

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GIS

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Protocols: Total RNAs were isolated from either hMLOs, 2D-DA neurons, or undifferentiated hESCs using TRIzol Reagent (Invitrogen). DNA contaminants were digested with DNASE I (Ambion). hPSC lines before passage 40 were used to generate hMLOs. The hPSCs were dissociated from intact colonies to single cells with TrypLETM Express (Life Technologies), and 10,000 cells were plated in each well of low-cell-adhesion 96-well culture plates with V-bottomed conical wells (Sumitomo Bakelite) to form uniform EBs. The wells contained neuronal induction medium containing DMEM/F12:Neurobasal (1:1), 1:100 N2 supplement (Invitrogen), 1:50 B27 without vitamin A (Invitrogen), 1% GlutaMAX (Invitrogen), 1% minimum essential media-nonessential amino acid (Invitrogen), and 0.1% β-mercaptoethanol (Invitrogen) supplemented with 1μg/ml heparin (Sigma-Aldrich), 10μM SB431542 (Stemgent), 200 ng/ml Noggin (Prospec), 0.8μM CHIR99021 (Reagents Direct), and 10μM ROCK inhibitor Y27632 (Calbiochem). The ROCK inhibitor was added for the first 48 h, and the neuronal induction medium was changed on day 2. On day 4, hMLOs were cultured with the addition of 100 ng/ml SHH-C25II (R&D Systems) and 100 ng/ml FGF8 (R&D Systems) for midbrain patterning. After 3 days, the hMLOs started to extrude neuroectodermal buds. At this point, the media was completely removed, and 30μl of reduced growth factor Matrigel was immediately added to each well using a pipettor equipped with a pre-chilled 200μl pipette tip. The Matrigel-embedded midbrain organoid was placed into a 37°C incubator for 30 min to allow the Matrigel to solidify and was grown in tissue growth induction medium containing Neurobasal medium, 1:100 N2 supplement (Invitrogen), 1:50 B27 without vitamin A (Invitrogen), 1% GlutaMAX (Invitrogen), 1% minimum essential media-nonessential amino acid (Invitrogen), and 0.1% β-mercaptoethanol (Invitrogen) supplemented with 2.5 μg/ml insulin (Sigma-Aldrich), 200 ng/ml laminin (Sigma-Aldrich), 100 ng/ml SHH-C25II (R&D Systems), and 100 ng/ml FGF8 (R&D Systems) for 24 h. Once the hMLOs were embedded in Matrigel, a more expanded neuroepithelium began to form in the organoids. To promote growth and differentiation, the hMLOs were transferred into ultra-low-attachment 6-well-plates (Costar) by pipetting using a cut 1000 μl pipette tip. The plates contained the final differentiation media, which consisted of Neurobasal medium, 1:100 N2 supplement (Invitrogen), 1:50 B27 without vitamin A (Invitrogen), 1% GlutaMAX (Invitrogen), 1% minimum essential media-nonessential amino acid (Invitrogen), 0.1% β-mercaptoethanol (Invitrogen), 10ng/ml BDNF (Peprotech), 10 ng/ml GDNF (Peprotech), 100 μM ascorbic acid (Sigma-Aldrich), and 125 μM db-cAMP (Sigma-Aldrich). The hMLOs were cultured using an orbital shaker to enhance nutrients and oxygen exchange (Lancaster and Knoblich, 2014). Antibiotics (100 U/ml penicillin G and 100 μg/ml streptomycin) were included in the culture media to prevent potential bacterial contamination over long-term culture. The medium was replaced every 3 days. For RNA-seq library preparation of hMLOs and 2D-DA neurons, the total RNA was further purified by column (Puelink RNA Mini kit, Ambion), and was prepared using 4μg of total RNA according to manufacturer’s protocol (TruSeq RNA Sample Preparation Kit v2, Illumina). Samples were multiplexed and sequenced single read 150bp paired end (HiSeq 2000, Illumina).

text: Homo sapiens

text: Homo sapiens

text: cell

text: Homo sapiens


text: GIS

text: public

text: ArrayExpress

text: human

text: Protocols: Total RNAs were isolated from either hMLOs, 2D-DA neurons, or undifferentiated hESCs using TRIzol Reagent (Invitrogen). DNA contaminants were digested with DNASE I (Ambion). The ventral half of the midbrain was dissected from second trimester prenatal brainstem under visual inspection, using a scalpel and hand-held dental drill. Cases were donated with informed consent of the mother, and were selected on the basis of the absence of any congenital anatomical abnormality on macroscopic brain inspection, and the absence of any major genetic defect noted on prenatal testing. The IRB approval is from the Western IRB, a private and fully accredited IRB that is used by many independent institutions in the USA: address 1019 39th Avenue SE Suite 120, Puyallup, WA 98374-2115. Study number: 1126332. WIRB protocol number: 20111080. Approval expires: 7/18/2016 RNA-seq libraries were constructed using Illumina TruSeq Stranded Total RNA Ribo-Zero sample Prep Kit following the manufacturer’s protocol. The ribosome RNAs were removed using Ribo-zero beads from ~ 800 ng DNAse treated total RNA. Following purification, the total RNA without Ribosome RNA was fragmented into small pieces using divalent cations under elevated temperature (94 degree) for 2 minutes. Under this condition, the range of the fragments length is from 130-290 bp with a median length of 185 bp. Reverse transcriptase and random primers were used to copy the cleaved RNA fragments into first strand cDNA. The second strand cDNA was synthesized using DNA Polymerase I and RNaseH, dUTP in place of dTTP. These cDNA fragments then went through an end repair process using T4 DNA polymerase, T4 PNK and Klenow DNA polymerase, and the addition of a single ‘A’ base using Klenow exo (3' to 5' exo minus), then ligation of the Illumina PE adapters using T4 DNA Ligase. An index (96 unique dual-index pairs) was inserted into Illumina adapters so that multiple samples can be sequenced in one lane of 8-lane flow cell if necessary. These products were then purified and enriched with 15 cycles of PCR to create the final cDNA library for high through put DNA sequencing using the H 100 base-pair paired-end reads and the Illumina HiSeq 2000, targeting approximately 100M reads per sample. The concentration of RNA libraries was measured by Qubit (Invitrogen, CA). The quality of RNA-seq library was measured by LabChipGX (Caliper, MA) using HT DNA 1K/12K/HiSens Labchip.

text: prenatal

characteristic: developmental stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: midbrain

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: External Id

text: GIS

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: prenatal

text: Homo sapiens

text: Homo sapiens

text: midbrain

text: Homo sapiens


text: GIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: prenatal

text: Homo sapiens

text: Homo sapiens

text: midbrain

text: Homo sapiens

text: female


text: UPPSALA UNIVERSITY, IEG, LIMNOLOGY

text: public

tag: Namespace:UPPSALA UNIVERSITY, IEG, LIMNOLOGY

text: marine metagenome

text: marine metagenome


text: ESTONIAN BIOCENTRE, ESTONIA

text: public

tag: Namespace:ESTONIAN BIOCENTRE, ESTONIA

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: ESTONIAN BIOCENTRE, ESTONIA

text: public

text: human

text: Hg N chrY capture

characteristic: description

text: Homo sapiens

text: Homo sapiens


E-MTAB-4862:Sample 185680

text: public

text: E-MTAB-4862:Sample 185680

tag: Namespace:Medical Clinic 1, Department of Medicine, University Hospital Erlangen, University of Erlangen-Nuremberg, Erlangen, Germany

text: ArrayExpress

text: Small intestine epithelial cell

characteristic: cell type

text: house mouse

text: Protocols: Murine small intestinal organoids were stimulated with 1000ng/ml IL-28A or left untreated for 24h. Total RNA was isolated and subjected to RNA-Seq (4 stimulated vs 4 unstimulated). The quality of the isolated RNA was determined with a Qubit (2.0) Fluorometer (Life Technologies, California, USA) and a Bioanalyzer 2100 (Agilent, Waldbronn, Germany). The TruSeq RNA Sample Prep Kit v2 (Illumina, Inc, California, USA) was used. Briefly, total RNA samples (100-1000 ng) were poly A enriched and then reverse-transcribed into double-stranded cDNA. The cDNA samples was fragmented, end-repaired and polyadenylated before ligation of TruSeq adapters containing the index for multiplexing Fragments containing TruSeq adapters on both ends were selectively enriched with PCR. The quality and quantity of the enriched libraries were validated using a Qubit (2.0) Fluorometer (Life Technologies, California, USA) and a Bioanalyzer 2100.

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain

text: Sample 185680

characteristic: title


E-MTAB-4862:Sample 185681

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Medical Clinic 1, Department of Medicine, University Hospital Erlangen, University of Erlangen-Nuremberg, Erlangen, Germany

text: public

characteristic: INSDC status

text: E-MTAB-4862:Sample 185681

text: ArrayExpress

text: Small intestine epithelial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 185681


E-MTAB-4862:Sample 185682

text: public

characteristic: SRA accession

text: E-MTAB-4862:Sample 185682

characteristic: Submitter Id

text: ArrayExpress

text: Small intestine epithelial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 185682


E-MTAB-4862:Sample 185683

text: public

text: E-MTAB-4862:Sample 185683

text: ArrayExpress

text: Small intestine epithelial cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: Sample 185683


E-MTAB-4862:Sample 185684

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4862:Sample 185684

text: ArrayExpress

text: Small intestine epithelial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 185684


E-MTAB-4862:Sample 185685

characteristic: External Id

text: public

text: E-MTAB-4862:Sample 185685

text: ArrayExpress

text: Small intestine epithelial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 185685


E-MTAB-4862:Sample 185686

characteristic: INSDC center name

text: public

text: E-MTAB-4862:Sample 185686

text: ArrayExpress

text: Small intestine epithelial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 185686


E-MTAB-4862:Sample 185687

characteristic: INSDC first public

text: public

text: E-MTAB-4862:Sample 185687

text: ArrayExpress

text: Small intestine epithelial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 185687


text: Centre for Genomic Regulation (crg)

characteristic: INSDC last update

text: public

tag: Namespace:Centre for Genomic Regulation (crg)

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: The RNAs of testes from 4 WT and 5 Zrsr1 mutant mice at day 15 Total RNA was extracted by Trizol prior to preparing the RNA libraries for the illumina HiSeq sequencing. RNAseq libraries were prepared from the testes of 4 wild-type mice and 5 Zrsr1 mutant mice (biological replicates) according to the manufacturer's protocol.

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus

characteristic: technical replicate


text: Centre for Genomic Regulation (crg)

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

text: public

characteristic: INSDC status

characteristic: collection date

text: MiSEQ Sequencing Klebsiella pneumoniae ST258

text: Greece

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: human

characteristic: host scientific name

text: clinical

characteristic: isolate

text: stool

characteristic: isolation source

text: 38.03 N 23.79 E

characteristic: lat lon

text: Klebsiella pneumoniae subsp. pneumoniae ST258

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: MinION Sequencing Klebsiella pneumoniae ST258

text: Greece

text: not provided

text: human

text: clinical

text: stool

text: 38.03 N 23.79 E

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

text: public

characteristic: INSDC status

text: Klebsiella pneumoniae ATCC BAA-2146

characteristic: description

text: USA

text: not provided

text: human

text: clinical

text: human urine

text: Klebsiella pneumoniae ATCC BAA-2146

text: Klebsiella pneumoniae ATCC BAA-2146

text: K6 [CCUG 45421, LMG 20218, MCV37]

characteristic: serovar

text: Klebsiella pneumoniae ATCC BAA-2146

characteristic: strain

text: MinION Sequencing Klebsiella pneumoniae ATCC BAA-2146


text: INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

text: public

characteristic: collection date

text: Klebsiella pneumoniae 700603

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: human

characteristic: host scientific name

text: clinical

characteristic: isolate

text: human urine

characteristic: isolation source

text: Klebsiella pneumoniae 700603

text: Klebsiella pneumoniae 700603

text: 1000527, 7561

text: Klebsiella pneumoniae ATCC 700603

text: MinION Sequencing Klebsiella pneumoniae 700603


characteristic: ENA-CHECKLIST

characteristic: External Id

text: INSTITUTE FOR MOLECULAR BIOSCIENCE UQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Klebsiella pneumoniae ATCC 13883

text: USA

text: not provided

text: human

text: clinical

text: human urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: NCTC 9633 [NCDC 298-53, NCDC 410-68]

text: Klebsiella pneumoniae ATCC-13883

text: MinION Sequencing Klebsiella pneumoniae ATCC 13883

characteristic: title


text: pancreas

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: DNA FROM PANCREATIC TUMOUR

characteristic: sample description

text: Mus musculus

text: mixed

text: PPAB8.2g_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

characteristic: strain

text: PPAB4.1h_panc tu 2


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB3.1h_panc tu


text: pancreas

text: Mus Musculus

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB5.1k_panc tu


text: pancreas

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

text: mixed

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB11.4f_panc tu

characteristic: title


text: pancreas

text: Mus Musculus

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB8.9d_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed


text: pancreas

text: Mus Musculus

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB4.11g_panc tu


text: pancreas

text: Mus Musculus

text: mixed

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAD9.1h_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

characteristic: sample description

text: Mus musculus

text: mixed

text: PPAB3.6j_panc tu


text: pancreas

text: Mus Musculus

text: mixed

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

characteristic: strain

text: PPAB4.9i_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB24.1F_panc tu


text: pancreas

text: Mus Musculus

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB20.5a_panc tu


text: pancreas

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

text: mixed

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB21.6a_panc tu

characteristic: title


text: pancreas

text: Mus Musculus

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB14.4a_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB17.2d_panc tu


text: pancreas

text: Mus Musculus

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB21.9f_panc tu


text: pancreas

text: Mus Musculus

text: mixed

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB20.7j_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

characteristic: sample description

text: Mus musculus

text: mixed

text: PPAB3.5e_panc tu


text: pancreas

text: Mus Musculus

text: mixed

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

characteristic: strain

text: PPAB9.1g_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB17.2c_panc tu


text: pancreas

text: Mus Musculus

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB9.3k_panc tu


text: pancreas

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

text: mixed

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB21.9g_panc tu

characteristic: title


text: pancreas

text: Mus Musculus

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAC3.1j_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed


text: pancreas

text: Mus Musculus

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC CYST

text: Mus musculus

text: mixed

text: PPAB28.2i_panc cyst


text: pancreas

text: Mus Musculus

text: mixed

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB8.4f_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC CYST

characteristic: sample description

text: Mus musculus

text: mixed

text: PPAB8.9e_panc cyst


text: pancreas

text: Mus Musculus

text: mixed

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

characteristic: strain

text: PPAB3.10b_panc tu


text: pancreas

text: Mus Musculus

text: mixed

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB3.3g_panc tu


text: pancreas

text: Mus Musculus

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC TUMOUR

text: Mus musculus

text: mixed

text: PPAB24.2g_panc tu


text: pancreas

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

text: mixed

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC CYST

text: Mus musculus

text: mixed

text: PPAB8.4f_panc cyst

characteristic: title


text: pancreas

text: Mus Musculus

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA FROM PANCREATIC CYST

text: Mus musculus

text: mixed

text: PPAB15.1a_panc cyst


text: Mus Musculus

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: DNA FROM TUMOUR

text: Mus musculus

text: mixed


E-MTAB-4762:Library-1 Plant-2 Zone-3

text: public

characteristic: SRA accession

text: E-MTAB-4762:Library-1 Plant-2 Zone-3

tag: Namespace:IGS (Genome Research of Industrial Microorganisms)- CeBiTec(Center for Biotechnology) -Bielefeld University

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: For the inoculation of lettuce leaves five days old mycelia disks of approximately 5-7 mm were used. From each individual plant nine detached leafs were placed in plastic containers with a layer of sterile agarose on the bottom, this was done for three different plants with mature heads. From each set eight leafs were inoculated with a single randomly placed mycelia disk, the remaining leaves functioned as blanks. During incubation the containers were loosely covered with clear plastic to retain moisture and allow for light penetration. Leaves were incubated for three days at room temperature. Subsequently samples were taken from the three interaction zones of each of the infected leaves, these cuttings were pooled per plant of origin. Interaction zone 1 is the dark brown lesion around the inoculation site, zone 2 was sampled from the lighter brown lesion and zone 3 was sampled from the green material outside of the lesion zones. After flash freezing in liquid nitrogen the samples were stored at -80 °C prior to further processing. The L. sativa cultivar Tizian (Syngenta Seeds GmbH) was cultivated under greenhouse conditions at the Bielefeld University (Germany). As substrate a 1:1 volume ratio of quartz sand and Archut Fruhstorfer einheitserde type N (Hawita gruppe GmbH, Germany) was used in one liter pots. The plants were fertilized weekly with a 0.1% Wuxal Top N solution (Wilhelm Haug GmbH and Co. KG, Germany). The rest of the week only water was supplemented based on requirement. The greenhouse had an average temperature of 18 °C during the cultivation period, the plants were exposed to natural light supplemented with artificial light (400 watt SON-T Agro Philips) on a 16/8 day and night regime. R. solani AG1-IB isolate 7/3/14 was obtained from the IGZ in Groβbeeren. The fungus was pre-cultivated on Difco Potato dextrose agar (Becton Dickinson, Heidelberg, Germany) at room temperature. The samples were grinded to a fine powder and per sample 0.75 ml was used for total RNA isolation with the RNeasy plant mini kit (Qiagen GmbH, Hilden, Germany) Per sample 2.25 μg of RNA was used for library preparation with the TruSeq® mRNA Sample Preparation Kit (stranded) (Illumina Inc., San Diego, U.S.A.).

characteristic: description

text: Lactuca sativa

characteristic: infect

text: Rhizoctonia solani

text: Rhizoctonia solani

text: Interaction zone 3

characteristic: sampling site

text: Rhizoctonia solani

text: Library-1 Plant-2 Zone-3


E-MTAB-4762:Library-10 Plant-1 Zone-3

characteristic: ENA-LAST-UPDATE

text: IGS (Genome Research of Industrial Microorganisms)- CeBiTec(Center for Biotechnology) -Bielefeld University

text: public

characteristic: INSDC status

text: E-MTAB-4762:Library-10 Plant-1 Zone-3

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

characteristic: organism

text: Rhizoctonia solani

text: Interaction zone 3

text: Rhizoctonia solani

text: Library-10 Plant-1 Zone-3


E-MTAB-4762:Library-11 Plant-1 Zone-2

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-4762:Library-11 Plant-1 Zone-2

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: Interaction zone 2

text: Rhizoctonia solani

text: Library-11 Plant-1 Zone-2


E-MTAB-4762:Library-12 Plant-3 Zone-4

characteristic: INSDC first public

text: public

text: E-MTAB-4762:Library-12 Plant-3 Zone-4

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: control

text: Rhizoctonia solani

text: Library-12 Plant-3 Zone-4

characteristic: title


E-MTAB-4762:Library-2 Plant-2 Zone-2

text: public

text: E-MTAB-4762:Library-2 Plant-2 Zone-2

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: Interaction zone 2

text: Rhizoctonia solani

text: Library-2 Plant-2 Zone-2


E-MTAB-4762:Library-3 Plant-2 Zone-1

text: public

text: E-MTAB-4762:Library-3 Plant-2 Zone-1

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: Interaction zone 1

text: Rhizoctonia solani

text: Library-3 Plant-2 Zone-1


E-MTAB-4762:Library-4 Plant-2 Zone-4

text: public

text: E-MTAB-4762:Library-4 Plant-2 Zone-4

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: control

text: Rhizoctonia solani

text: Library-4 Plant-2 Zone-4


E-MTAB-4762:Library-5 Plant-3 Zone-3

text: public

text: E-MTAB-4762:Library-5 Plant-3 Zone-3

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: Interaction zone 3

text: Rhizoctonia solani

text: Library-5 Plant-3 Zone-3


E-MTAB-4762:Library-6 Plant-3 Zone-2

text: public

text: E-MTAB-4762:Library-6 Plant-3 Zone-2

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: Interaction zone 2

text: Rhizoctonia solani

text: Library-6 Plant-3 Zone-2


E-MTAB-4762:Library-7 Plant-1 Zone-1

text: public

text: E-MTAB-4762:Library-7 Plant-1 Zone-1

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: Interaction zone 1

text: Rhizoctonia solani

text: Library-7 Plant-1 Zone-1


E-MTAB-4762:Library-8 Plant-1 Zone-4

text: public

text: E-MTAB-4762:Library-8 Plant-1 Zone-4

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: control

text: Rhizoctonia solani

text: Library-8 Plant-1 Zone-4


E-MTAB-4762:Library-9 Plant-3 Zone-1

text: public

text: E-MTAB-4762:Library-9 Plant-3 Zone-1

text: ArrayExpress

text: Lactuca sativa

text: Rhizoctonia solani

text: Rhizoctonia solani

text: Interaction zone 1

text: Rhizoctonia solani

text: Library-9 Plant-3 Zone-1


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Preterm faecal microbiota

characteristic: sample description

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Hvidovre Hospital

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Hvidovre Hospital

characteristic: collection date

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: Blood

characteristic: isolation source

text: Enterococcus faecium

text: Enterococcus faecium

text: Clinical VRE


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Hvidovre Hospital

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Denmark

text: diseased

text: Human

text: Rectal swab

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

text: Clinical VRE


characteristic: External Id

text: Hvidovre Hospital

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Denmark

text: diseased

text: Human

text: Wound

text: Enterococcus faecium

text: Enterococcus faecium

text: Clinical VRE

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Hvidovre Hospital

characteristic: INSDC last update

text: public

text: Denmark

text: diseased

text: Human

text: Urine

text: Enterococcus faecium

text: Enterococcus faecium

text: Clinical VRE


text: UNIVERSITY OF HELSINKI

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF HELSINKI

characteristic: collection date

text: Dominant hand

characteristic: description

text: human

characteristic: environment (biome)

text: skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

characteristic: investigation type

text: human skin metagenome

text: Human skin microbiome

characteristic: project name

text: human skin metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Human skin microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: INSDC center name

text: public

characteristic: INSDC status

tag: Namespace:HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: Submitter Id

text: Crop

characteristic: bodypart

text: C

characteristic: diet

text: metagenome

characteristic: organism

text: metagenome

text: Digesta

characteristic: type


characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Ileum

text: C

text: metagenome

text: metagenome

characteristic: title

text: Digesta


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Ileum

text: C

text: metagenome

text: metagenome

text: Mucosa


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Caeca

text: C

text: metagenome

text: metagenome

text: Digesta


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Caeca

text: C

text: metagenome

text: metagenome

text: Mucosa


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Crop

text: D

text: metagenome

text: metagenome

text: Digesta


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Ileum

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text: A

text: metagenome

text: metagenome

text: Mucosa


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Crop

text: G

text: metagenome

text: metagenome

text: Digesta


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Ileum

text: G

text: metagenome

text: metagenome

text: Digesta


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Ileum

text: G

text: metagenome

text: metagenome

text: Mucosa


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Caeca

text: G

text: metagenome

text: metagenome

text: Digesta