characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_2024:2024.visit5.MNIH95NP.BFL10A.FE

characteristic: Submitter Id

text: adult

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: antibiotic

text: TRUE

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: n

text: Had cesarean section

text: human gut metagenome

text: GAZ:Tanzania

text: Missing: Not collected

text: TRUE

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: hospital

characteristic: env feature

text: feces

characteristic: env matter

text: host-associated

characteristic: env package

text: feces

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: height or length

characteristic: hemoglobin

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: hiv

text: human

characteristic: host common name

text: Homo Sapiens

characteristic: host subject id

characteristic: host taxid

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: undernourished

text: MIssing: Not provided

text: human gut metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: stool

text: human gut metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: E


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2024:2024.visit5.MNIH95NP.BFL10A.O

text: adult

text: years

characteristic: anonymized name

text: TRUE

characteristic: bmi

text: UBERON:oral cavity

characteristic: body habitat

text: UBERON:saliva

characteristic: body product

text: UBERON:mouth

characteristic: body site

text: n

text: Had cesarean section

characteristic: comments

text: human oral metagenome

characteristic: common name

characteristic: compliance

text: GAZ:Tanzania

characteristic: country

characteristic: date extracted

text: Missing: Not collected

characteristic: depth

characteristic: description

text: TRUE

characteristic: dob

text: dense settlement biome

text: hospital

text: saliva

text: host-associated

text: saliva

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: human

text: Homo Sapiens

characteristic: host scientific name

text: MIssing: Not provided

text: MIssing: Not provided

characteristic: latitude

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: undernourished

text: MIssing: Not provided

text: human oral metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: saliva

text: human oral metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: The microbiota at multiple body sites during pregnancy in a rural Tanzanian population and the effects of Moringa supplemented probiotic yogurt.

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: C


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_2024:2024.visit5.MNIH95NP.BFL10A.V

characteristic: Submitter Id

text: adult

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: antibiotic

text: TRUE

text: UBERON:genito-urinary system

text: UBERON:mucus

text: UBERON:vagina

text: n

text: Had cesarean section

text: vagina metagenome

text: GAZ:Tanzania

text: Missing: Not collected

text: TRUE

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: hospital

characteristic: env feature

text: mucus

characteristic: env matter

text: host-associated

characteristic: env package

text: mucus

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: height or length

characteristic: hemoglobin

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: hiv

text: human

characteristic: host common name

text: Homo Sapiens

characteristic: host subject id

characteristic: host taxid

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: undernourished

text: MIssing: Not provided

text: human vaginal metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: vaginal

text: human vaginal metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: J


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2024:2024.visit5.MNIH96NP.BFL10S.FE

text: adult

text: years

characteristic: anonymized name

text: TRUE

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: n

text: human gut metagenome

characteristic: common name

characteristic: compliance

text: GAZ:Tanzania

characteristic: country

characteristic: date extracted

text: Missing: Not collected

characteristic: depth

characteristic: description

text: TRUE

characteristic: dob

text: dense settlement biome

text: hospital

text: feces

text: host-associated

text: feces

text: Missing: Not recorded

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: human

text: Homo Sapiens

characteristic: host scientific name

text: MIssing: Not provided

text: MIssing: Not provided

characteristic: latitude

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human gut metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: stool

text: human gut metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: F


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiita_sid_2024:2024.visit5.MNIH96NP.BFL10S.O

characteristic: Submitter Id

text: adult

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: antibiotic

text: TRUE

text: UBERON:oral cavity

text: UBERON:saliva

text: UBERON:mouth

text: n

text: human oral metagenome

text: GAZ:Tanzania

text: Missing: Not collected

text: TRUE

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: hospital

characteristic: env feature

text: saliva

characteristic: env matter

text: host-associated

characteristic: env package

text: saliva

text: Missing: Not recorded

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: height or length

characteristic: hemoglobin

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: hiv

text: human

characteristic: host common name

text: Homo Sapiens

characteristic: host subject id

characteristic: host taxid

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human oral metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: saliva

text: human oral metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: C


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2024:2024.visit5.MNIH96NP.BFL10S.V

text: adult

text: years

characteristic: anonymized name

text: TRUE

characteristic: bmi

text: UBERON:genito-urinary system

characteristic: body habitat

text: UBERON:mucus

characteristic: body product

text: UBERON:vagina

characteristic: body site

text: n

text: vagina metagenome

characteristic: common name

characteristic: compliance

text: GAZ:Tanzania

characteristic: country

characteristic: date extracted

text: Missing: Not collected

characteristic: depth

characteristic: description

text: TRUE

characteristic: dob

text: dense settlement biome

text: hospital

text: mucus

text: host-associated

text: mucus

text: Missing: Not recorded

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: human

text: Homo Sapiens

characteristic: host scientific name

text: MIssing: Not provided

text: MIssing: Not provided

characteristic: latitude

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human vaginal metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: vaginal

text: human vaginal metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: M


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiita_sid_2024:2024.visit5.MNIH97NP.BFL10H.FE

characteristic: Submitter Id

text: adult

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: antibiotic

text: TRUE

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: n

text: human gut metagenome

text: GAZ:Tanzania

text: Missing: Not collected

text: TRUE

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: hospital

characteristic: env feature

text: feces

characteristic: env matter

text: host-associated

characteristic: env package

text: feces

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: height or length

characteristic: hemoglobin

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: hiv

text: human

characteristic: host common name

text: Homo Sapiens

characteristic: host subject id

characteristic: host taxid

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human gut metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: stool

text: human gut metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: G


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2024:2024.visit5.MNIH97NP.BFL10H.O

text: adult

text: years

characteristic: anonymized name

text: TRUE

characteristic: bmi

text: UBERON:oral cavity

characteristic: body habitat

text: UBERON:saliva

characteristic: body product

text: UBERON:mouth

characteristic: body site

text: n

text: human oral metagenome

characteristic: common name

characteristic: compliance

text: GAZ:Tanzania

characteristic: country

characteristic: date extracted

text: Missing: Not collected

characteristic: depth

characteristic: description

text: TRUE

characteristic: dob

text: dense settlement biome

text: hospital

text: saliva

text: host-associated

text: saliva

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: human

text: Homo Sapiens

characteristic: host scientific name

text: MIssing: Not provided

text: MIssing: Not provided

characteristic: latitude

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human oral metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: saliva

text: human oral metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: D


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiita_sid_2024:2024.visit5.MNIH97NP.BFL10H.V

characteristic: Submitter Id

text: adult

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: antibiotic

text: TRUE

text: UBERON:genito-urinary system

text: UBERON:mucus

text: UBERON:vagina

text: n

text: vagina metagenome

text: GAZ:Tanzania

text: Missing: Not collected

text: TRUE

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: hospital

characteristic: env feature

text: mucus

characteristic: env matter

text: host-associated

characteristic: env package

text: mucus

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: height or length

characteristic: hemoglobin

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: hiv

text: human

characteristic: host common name

text: Homo Sapiens

characteristic: host subject id

characteristic: host taxid

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human vaginal metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: vaginal

text: human vaginal metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: H


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2024:2024.visit5.MNIH99NP.BFL10M.FE

text: adult

text: years

characteristic: anonymized name

text: TRUE

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: n

text: human gut metagenome

characteristic: common name

characteristic: compliance

text: GAZ:Tanzania

characteristic: country

characteristic: date extracted

text: Missing: Not collected

characteristic: depth

characteristic: description

text: TRUE

characteristic: dob

text: dense settlement biome

text: hospital

text: feces

text: host-associated

text: feces

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: human

text: Homo Sapiens

characteristic: host scientific name

text: MIssing: Not provided

text: MIssing: Not provided

characteristic: latitude

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human gut metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: stool

text: human gut metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: G


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiita_sid_2024:2024.visit5.MNIH99NP.BFL10M.O

characteristic: Submitter Id

text: adult

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: antibiotic

text: TRUE

text: UBERON:oral cavity

text: UBERON:saliva

text: UBERON:mouth

text: n

text: human oral metagenome

text: GAZ:Tanzania

text: Missing: Not collected

text: TRUE

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: hospital

characteristic: env feature

text: saliva

characteristic: env matter

text: host-associated

characteristic: env package

text: saliva

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: height or length

characteristic: hemoglobin

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: hiv

text: human

characteristic: host common name

text: Homo Sapiens

characteristic: host subject id

characteristic: host taxid

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human oral metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: saliva

text: human oral metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: C


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2024:2024.visit5.MNIH99NP.BFL10M.V

text: adult

text: years

characteristic: anonymized name

text: TRUE

characteristic: bmi

text: UBERON:genito-urinary system

characteristic: body habitat

text: UBERON:mucus

characteristic: body product

text: UBERON:vagina

characteristic: body site

text: n

text: vagina metagenome

characteristic: common name

characteristic: compliance

text: GAZ:Tanzania

characteristic: country

characteristic: date extracted

text: Missing: Not collected

characteristic: depth

characteristic: description

text: TRUE

characteristic: dob

text: dense settlement biome

text: hospital

text: mucus

text: host-associated

text: mucus

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: human

text: Homo Sapiens

characteristic: host scientific name

text: MIssing: Not provided

text: MIssing: Not provided

characteristic: latitude

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human vaginal metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: completed

text: vaginal

text: human vaginal metagenome

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: I


J.0167 cp complete genome

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: J.0167 cp complete genome

tag: Namespace:School of BioSciences, The University of Melbourne

characteristic: Submitter Id

text: J.0167 Helminthocladia australis cp complete genome

text: Helminthocladia australis

characteristic: organism

text: Helminthocladia australis

characteristic: specimen voucher

text: J.0167 cp complete genome

characteristic: title


text: BiGeA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: organic material

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: uncultured bacterium

text: Effect of Bifidobacterium breve on the intestinal microbiota of coeliac children on a gluten free diet

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BiGeA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Control

characteristic: description

text: human gut

text: organic material

text: faeces

text: Slovenia

text: human-gut

text: metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina MiSeq


text: KFU-TU

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


HV00480 cp complete genome

text: School of BioSciences, The University of Melbourne

text: public

text: HV00480 cp complete genome

text: HV00480 Hommersandiophycus borowitzkae cp complete genome

text: Hommersandiophycus borowitzkae

text: Hommersandiophycus borowitzkae

characteristic: specimen voucher

text: HV00480 cp complete genome


J.0158 cp complete genome

text: public

text: J.0158 cp complete genome

text: J.0158 Izziella formosana cp complete genome

text: Izziella formosana

text: Izziella formosana

text: J.0158 cp complete genome


text: BIMSB, MDC

text: public

tag: Namespace:BIMSB, MDC

text: ArrayExpress

characteristic: broker name

text: neural cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Ascl1-iNeurons, grown on a Millicell insert, were treated with cycloheximide (100 g/ml), separated on neurites and soma as described earlier and frozen in liquid nitrogen. 20 inserts were pooled together for neurites isolation, and two inserts for soma isolation. Ribo-seq libraries were generated as previously described (Ingolia, 2014), with some modifications. Each sample was lysed in 1 ml of polysome buffer (20 mM Tris pH 7.4, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 ug/ml cycloheximide, 5 U/ml Turbo DNase) and digested with 70 U of RNase I for 40 min at RT. As our analysis revealed that the quality and composition of the libraries generated with and without monosome recovery were comparable (Figure S1), ribosome isolation step was omitted Mouse Embryonic Stem Cells (mESC) with the doxycycline-inducible expression of Ascl1 (Ascl1-mESC) were generated as previously described (Iacovino et al., 2014). mESC were growth on gelatin coated flasks in 80% 2i/20% mESC medium. 2i medium: 50% Advanced DMEM/F12, 50% Neurobasal, 1X N2 (17502048 Life Technologies), 1X B27 (17504044 Life Technologies), 1 mM L-Glutamine (25030024 Gibco), 0.1 mM ß-Mercaptoethanol (ßME), 103 U/mL Leukaemia inhibitory factor (LIF, ESG1107 Merk Millipore), 3µM CHIR99021, 1µM PD03259901 (130-104-170 Milenyi Biotec). mESC medium: KnockoutTM DMEM, 14% Fetal bovine serum (10439016 Life Technologies), 0.1 mM ßME, 1 mM L-Glutamine, 1X MEM Non-essential Amino Acid (11140035 Life Technologies), 1X Nucleosides (ES008D Merck Millipore), 103 U/mL LIF. For neuronal differential into Ascl1-iNeurons and separation on soma and neurites, mESCs were allowed to form embryoid bodies (EB) by growing in suspension in AK differentiation medium (50% Advanced DMEM/F12, 50% Neurobasal, 10% Knockout Serum replacement (10828028 Life Technologies), 1 mM L-Glutamine, 0.1 mM ßME). After 1 day, EB formed from 106 mESCs were plated on a Millicell 6-well cell culture insert (PISP30R48 3 m Millipore), bottom-coated with Matrigel (356237 Corning). Cells were grown in a monolayer differentiation medium (Advanced DMEM/F12 supplemented with B27, N2 and 3 g/ml doxycycline). After 6 days one of the compartments was removed using cotton swabs and the membrane with the remaining compartment (soma or neurites) was used for either RNA extraction with TRIFast (peqGOLD) or protein extraction with 8M UREA, 0.1 M Tris-HCl pH 7.5. After RNAse digest, RNA was isolated using Direct-zol RNA MiniPrep (Biozym) and 400 ng of the isolated footprinted RNA were depleted of rRNA using RiboZero Gold rRNA removal kit (Illumina). The sample was concentrated using RNA clean and concentrator-5 kit (Biozym) and phosphorylated with 10 U PNK for 30 min at 37°C. The RNA was separated on a 15% Urea PAAG, 27-30 nt RNA fragments were eluted from gel Truseq small RNA library prep kit (RS-200-0012 Illumina)

text: Neurite

characteristic: fraction

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: BIMSB, MDC

text: public

text: ArrayExpress

text: neural cell

text: house mouse

text: Soma

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIMSB, MDC

text: public

text: ArrayExpress

text: neural cell

text: house mouse

text: Protocols: Mouse Embryonic Stem Cells (mESC) with the doxycycline-inducible expression of Ascl1 (Ascl1-mESC) were generated as previously described (Iacovino et al., 2014). mESC were growth on gelatin coated flasks in 80% 2i/20% mESC medium. 2i medium: 50% Advanced DMEM/F12, 50% Neurobasal, 1X N2 (17502048 Life Technologies), 1X B27 (17504044 Life Technologies), 1 mM L-Glutamine (25030024 Gibco), 0.1 mM ß-Mercaptoethanol (ßME), 103 U/mL Leukaemia inhibitory factor (LIF, ESG1107 Merk Millipore), 3µM CHIR99021, 1µM PD03259901 (130-104-170 Milenyi Biotec). mESC medium: KnockoutTM DMEM, 14% Fetal bovine serum (10439016 Life Technologies), 0.1 mM ßME, 1 mM L-Glutamine, 1X MEM Non-essential Amino Acid (11140035 Life Technologies), 1X Nucleosides (ES008D Merck Millipore), 103 U/mL LIF. For neuronal differential into Ascl1-iNeurons and separation on soma and neurites, mESCs were allowed to form embryoid bodies (EB) by growing in suspension in AK differentiation medium (50% Advanced DMEM/F12, 50% Neurobasal, 10% Knockout Serum replacement (10828028 Life Technologies), 1 mM L-Glutamine, 0.1 mM ßME). After 1 day, EB formed from 106 mESCs were plated on a Millicell 6-well cell culture insert (PISP30R48 3 m Millipore), bottom-coated with Matrigel (356237 Corning). Cells were grown in a monolayer differentiation medium (Advanced DMEM/F12 supplemented with B27, N2 and 3 g/ml doxycycline). After 6 days one of the compartments was removed using cotton swabs and the membrane with the remaining compartment (soma or neurites) was used for either RNA extraction with TRIFast (peqGOLD) or protein extraction with 8M UREA, 0.1 M Tris-HCl pH 7.5. 500 ng of total RNA isolated from neurites (isolated from Ascl1-iNeurons grown on ~ 3 Millicell inserts) or soma (~ 1/3 Millicell insert) was supplemented with the ERCC RNA spike-in mix (4456740 Ambion) Truseq stranded total RNA library prep kit (RS-122-2201 Illumina)

text: Neurite

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: BIMSB, MDC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: neural cell

text: house mouse

text: Soma

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: Institute of tropical medicine

characteristic: INSDC last update

text: public

tag: Namespace:Institute of tropical medicine

characteristic: Submitter Id

characteristic: collection date

text: skin

characteristic: environment (biome)

text: skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: Benin

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-skin

characteristic: human skin environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: BU microbiome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Sample from a Buruli ulcer skin wound


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of tropical medicine

text: public

characteristic: INSDC status

characteristic: SRA accession

text: skin

text: skin

text: skin

text: Benin

text: human-skin

text: metagenome

text: metagenome

characteristic: organism

text: BU microbiome

text: metagenome

text: Illumina

text: Sample from a non-Buruli ulcer skin wound

characteristic: title


characteristic: External Id

text: Institute of tropical medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: skin

characteristic: environment (biome)

text: skin

text: skin

text: Benin

text: human-skin

text: metagenome

text: metagenome

text: BU microbiome

text: metagenome

text: Illumina

text: Healthy skin swab from Benin


Blank

text: Institute of tropical medicine

text: public

text: Blank

text: skin

text: skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: Benin

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-skin

characteristic: human skin environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: BU microbiome

text: metagenome

text: Illumina

text: Blank reagents control sample


GTC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of tropical medicine

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GTC

text: skin

text: skin

text: skin

text: Benin

text: human-skin

text: metagenome

text: metagenome

text: BU microbiome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: GTC control sample


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Legionella pneumophila

characteristic: organism

text: Legionella pneumophila

text: Legionella pneumophila Paris

characteristic: title


Paris WT

text: public

text: Paris WT

text: Legionella pneumophila

text: Legionella pneumophila

text: Legionella pneumophila Paris


J.0237 cp complete genome

text: public

text: J.0237 cp complete genome

text: J.0237 Liagora harveyana cp complete genome

characteristic: description

text: Liagora harveyana

text: Liagora harveyana

characteristic: specimen voucher

text: J.0237 cp complete genome


J.0256 cp complete genome

text: public

text: J.0256 cp complete genome

text: J.0256 Liagoropsis maxima cp complete genome

text: Liagoropsis maxima

text: Liagoropsis maxima

text: J.0256 cp complete genome


J.0154 cp complete genome

text: public

text: J.0154 cp complete genome

text: J.0154 Neoizziella asiatica cp complete genome

text: Neoizziella asiatica

text: Neoizziella asiatica

text: J.0154 cp complete genome


J.0141 cp complete genome

text: public

text: J.0141 cp complete genome

text: J.0141 Nothogenia fastigiata cp complete genome

text: Nothogenia fastigiata

text: Nothogenia fastigiata

text: J.0141 cp complete genome


J.0255 cp complete genome

text: public

text: J.0255 cp complete genome

text: J.0255 Yamadaella caenomyce cp complete genome

text: Yamadaella caenomyce

text: Yamadaella caenomyce

text: J.0255 cp complete genome


C.0024 cp complete genome

text: public

text: C.0024 cp complete genome

text: C.0024 Trichogloeopsis pedicellata cp complete genome

text: Trichogloeopsis pedicellata

text: Trichogloeopsis pedicellata

text: C.0024 cp complete genome


Sample 1

text: Universidad de Leon

text: public

text: Sample 1

tag: Namespace:Universidad de Leon

text: Lens culinaris subsp. culinaris

text: Lens culinaris subsp. culinaris

text: Lens culinaris aereal parts, three week old plantlets


text: EMBL

text: public

characteristic: biological replicate

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: For 4C libraries we collected the following embryonic mouse tissues: - C57Bl/6 wild-type forelimbs (dissected into anterior, middle and posterior sections) and whole hindlimbs of E11.5 mouse embryos - INV(6-C2)/del(-90kb-C2) whole forelimbs and hindlimbs. For this purpose heterozygous INV(6-C2) mice were crossed with heterozygous del(-90kb-ShhSB2) mice. Compound heterozygous embryos could phenotypically easily be distinguished from all other phenotypes due to their small size and truncated limbs. All tissues were collected into PBS pH=7.4. Single cell suspensions were obtained by incubation in 1% trypsin at 37° C for 1 minute and rigorous pipetting with a blue P1000 tip. The cells were then immediately fixed with 2% formaldehyde in 10% FCS/PBS at room temperature for 10 minutes. Glycine was added to a final concentration of 0.1M and the samples were moved to ice to quench the cross‐linking reaction. The cells were centrifuged at 8000 rpm for 8 minutes at 4°C, and the supernatant removed. Cells were lysed in 1ml cold lysis buffer (50mM Hepes pH=8, 150mM NaCl, 5mM EDTA, 0.5% NP‐40 1.2% Triton X‐100) for 10 minutes on ice. Successful lysis was verified by Methyl Green‐Pyronin staining. Cell lysate was centrifuged at 8000 rpm at 4°C, the supernatant removed, and the pellet was frozen in liquid N2 until sufficient material was available. Once sufficient tissue had been collected, cells were resuspended in 62.5 µl 10X NlaIII restriction buffer, placed at 37ºC and 15 µl 10% SDS was added. Cells were incubated for 1h at 37ºC, while shaking at 900rpm to remove non-crosslinked proteins. Subsequently, SDS was sequestered, by adding 150µl 10% Triton X-100 and incubated at 37ºC while shaking at 900 RPM. The sample was then digested by adding 400U (40 µl) NlaIII and incubation at 37ºC. After 4h and 8h another 400U of enzyme was added (total: 1200U NlaIII), adjusting the volume and buffer concentration as necessary, and the restriction digest was continued overnight , during the two latter digests. The next day we verified digestion efficiency by de-crosslinking and proteinaseK-treating samples taken before and after digest and running on an 0.6% agarose gel. If digest was not sufficient further enzyme was added for another 4h. Following sufficient digestion, enzyme was inactivated by incubating 20 minutes at 65°C and samples were transferred to a 50ml falcon tube. Samples were ligated in a 7ml volume using 700µl 10X ligation buffer (0.3M Tris‐HCl pH=7.8, 0.1M MgCl2, 1.54% DTT, 0.5% ATP) and 50U T4 DNA ligase and incubated at 16°C overnight. We determined ligation efficiency by de-crosslinking and proteinaseK-treating 100µl of ligation reaction and running on an 0.6% agarose gel. If further ligation was necessary, we added fresh ATP and continued ligation for 4-6h. Once ligation was complete we de-crosslinked the sample overnight at 65ºC in the presence of 30µl Proteinase K (10mg/ml). The next morning, we added 30µl RNAse A (10mg/ml) and incubated the sample for 45 min at 37ºC. We then extracted DNA by adding 7ml phenol-chloroform and precipitating DNA using 7ml water, 1.5 ml 2M NaAcetate pH 5.6, 7 µl 20mg/ml glycogen and 35 ml 100% ethanol. The resulting pellet was dissolved in 150µl Tris pH 7.5 at 37ºC. The obtained 3C library was then subjected to a second round of overnight digestion using 60U DpnII in a 500µl volume. The next day we verified digestion efficiency and subsequently inactivated the enzyme by incubating the sample at 65ºC for 25 minutes. The sample was then subjected to phenol-chloroform extraction, resuspended in 100µl water and ligated overnight with 100U T4 DNA ligase in a final volume of 14.3ml. The next day the DNA was first phenol-chloroform extracted and then purified using the QIAquick PCR purification kit, using 3 columns per sample, eluting with 50µl 10mM Tris per column. 4C primers for the region of interest were selected from the Tanay lab 4C primer database {vandeWerken:2012gv}, further tested for off-targets using BiSearch {Aranyi:2006ip} and only primers with <50 hits were kept. For quality assessment of primers we tested them on 25, 50, 100 and 200ng of 4C template and kept only those with reproducible banding pattern at all concentrations. The final list of 4C primers is included in the Primer Table. Using these primers, we set up PCR reactions for sequencing with primers containing barcodes and the Solexa sequencing adapter at their 5’ end. For PCRs we used Expand Long Template system from Roche, using either 100 or 200ng of the 4C library as template and setting up 16 PCR reactions in parallel for each primer. PCR products were purified using Roche HighPure PCR product purification kit, adding an additional 1 min spin after the last wash step to remove all residual ethanol. The samples were eluted in 50μl 10 mM Tris pH=8.0, pooled and 1 µg each of approximately 40 PCR products were pooled to achieve a balanced base composition at the first 4 bases.

text: embryonic day 11.5

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Forelimb

characteristic: organism part

text: small size and truncated limbs

characteristic: phenotype

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: Mus musculus

text: Mus musculus

text: Hindlimb

text: small size and truncated limbs

text: Mus musculus


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: Mus musculus

text: Mus musculus

text: Anterior forelimb

text: wild type phenotype

text: Mus musculus


text: EMBL

text: public

characteristic: biological replicate

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 11.5

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Medial forelimb

text: wild type phenotype

text: Mus musculus

characteristic: title


text: EMBL

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryonic day 11.5

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Posterior forelimb

text: wild type phenotype

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: Mus musculus

text: Mus musculus

text: Hindlimb

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: Shh

text: Mus musculus

text: Mus musculus

text: Hindlimb

text: wild type phenotype

text: Mus musculus


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: Shh

text: Mus musculus

text: Mus musculus

text: Anterior forelimb

text: wild type phenotype

text: Mus musculus


text: EMBL

text: public

characteristic: biological replicate

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 11.5

text: ZRS

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Hindlimb

text: wild type phenotype

text: Mus musculus

text: ZRS

characteristic: title


text: EMBL

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryonic day 11.5

characteristic: developmental stage

text: ZRS

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Anterior forelimb

text: wild type phenotype

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: ZRS

text: Mus musculus

text: Mus musculus

text: Hindlimb

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: Shh

text: Mus musculus

text: Mus musculus

text: Forelimb

text: small size and truncated limbs

text: Mus musculus


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: Shh

text: Mus musculus

text: Mus musculus

text: Posterior forelimb

text: wild type phenotype

text: Mus musculus


text: EMBL

text: public

characteristic: biological replicate

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 11.5

text: Shh

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Hindlimb

text: small size and truncated limbs

text: Mus musculus

characteristic: title


text: EMBL

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryonic day 11.5

characteristic: developmental stage

text: ZRS

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Posterior forelimb

text: wild type phenotype

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: ZRS

text: Mus musculus

text: Mus musculus

text: Forelimb

characteristic: organism part

text: small size and truncated limbs

characteristic: phenotype

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: ZRS

text: Mus musculus

text: Mus musculus

text: Hindlimb

text: small size and truncated limbs

text: Mus musculus


E-MTAB-4981:Female Repl 1, clone J2

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4981:Female Repl 1, clone J2

tag: Namespace:Institute of Science and Technology Austria

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: 9-day old adult Daphnia were harvested from lab cultures Daphnia were grown at 20°C on a 15:9 hour light:dark cycle in semi-artificial medium and fed with algae every other day. cDNA preparation and ploy-A enrichment

text: Daphnia galeata

text: Daphnia galeata

text: Daphnia galeata

text: female

characteristic: sex

characteristic: strain

text: Female Repl 1, clone J2


E-MTAB-4981:Female Repl 1, clone M10

text: Institute of Science and Technology Austria

text: public

text: E-MTAB-4981:Female Repl 1, clone M10

text: ArrayExpress

characteristic: broker name

characteristic: description

text: Daphnia galeata

characteristic: organism

text: Daphnia galeata

text: Daphnia galeata

text: female

text: Female Repl 1, clone M10

characteristic: title


E-MTAB-4981:Female Repl 2, clone J2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4981:Female Repl 2, clone J2

text: ArrayExpress

text: Daphnia galeata

text: Daphnia galeata

text: Daphnia galeata

text: female

text: Female Repl 2, clone J2


E-MTAB-4981:Female Repl 2, clone M10

text: public

text: E-MTAB-4981:Female Repl 2, clone M10

text: ArrayExpress

text: Daphnia galeata

text: Daphnia galeata

text: Daphnia galeata

text: female

text: Female Repl 2, clone M10


E-MTAB-4981:Male Repl 1, clone J2

text: public

text: E-MTAB-4981:Male Repl 1, clone J2

text: ArrayExpress

text: Daphnia galeata

text: Daphnia galeata

text: Daphnia galeata

text: male

text: Male Repl 1, clone J2


E-MTAB-4981:Male Repl 1, clone M10

text: public

text: E-MTAB-4981:Male Repl 1, clone M10

text: ArrayExpress

text: Daphnia galeata

text: Daphnia galeata

text: Daphnia galeata

text: male

text: Male Repl 1, clone M10


E-MTAB-4981:Male Repl 2, clone J2

text: public

text: E-MTAB-4981:Male Repl 2, clone J2

text: ArrayExpress

text: Daphnia galeata

text: Daphnia galeata

text: Daphnia galeata

text: male

text: Male Repl 2, clone J2


E-MTAB-4981:Male Repl 2, clone M10

text: public

text: E-MTAB-4981:Male Repl 2, clone M10

text: ArrayExpress

text: Daphnia galeata

text: Daphnia galeata

text: Daphnia galeata

text: male

text: Male Repl 2, clone M10


text: UNIVERSITY OF HAMBURG

text: public

tag: Namespace:UNIVERSITY OF HAMBURG

text: Mixed mRNA probe (from 24 genotypically distinct lineages of the same species), transcribed into cDNA

text: Daphnia galeata

text: Daphnia galeata

text: Transcriptome sequencing


text: Kennedy Institute of Rheumatology

text: public

tag: Namespace:Kennedy Institute of Rheumatology

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Human cell lines (MCF-7) were cultured in DMEM (D6546-500ML; Sigma Aldrich) each supplemented with 10% fetal bovine serum (F7524-500ML; Sigma Aldrich), 2 mM L-glutamine (G7513- 100ML; Sigma Aldrich), 50 units/ml of penicillin, and 50 μg/ml of streptomycin (P0781-100ML; Sigma Aldrich). 500 μM BIQ for 26 hours total RNA was prepared using mirVanaTM miRNA isolation kit (AM1560; Life Technologies), according to manufacturer’s protocol. Genomic DNA was removed from RNA samples using TURBO DNA-freeTM Kit (AM1907; Life Technologies) according to the manufacturer’s protocol. poly-A selection from total RNA

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: bicyclic isoquinoline

characteristic: treatment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kennedy Institute of Rheumatology

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: Protocols: Human cell lines (MCF-7) were cultured in DMEM (D6546-500ML; Sigma Aldrich) each supplemented with 10% fetal bovine serum (F7524-500ML; Sigma Aldrich), 2 mM L-glutamine (G7513- 100ML; Sigma Aldrich), 50 units/ml of penicillin, and 50 μg/ml of streptomycin (P0781-100ML; Sigma Aldrich). 250 μM BNS for 16 hours total RNA was prepared using mirVanaTM miRNA isolation kit (AM1560; Life Technologies), according to manufacturer’s protocol. Genomic DNA was removed from RNA samples using TURBO DNA-freeTM Kit (AM1907; Life Technologies) according to the manufacturer’s protocol. poly-A selection from total RNA

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: bicyclic naphthalenylsulfonyl


text: Kennedy Institute of Rheumatology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ArrayExpress

text: human

text: Protocols: Human cell lines (MCF-7) were cultured in DMEM (D6546-500ML; Sigma Aldrich) each supplemented with 10% fetal bovine serum (F7524-500ML; Sigma Aldrich), 2 mM L-glutamine (G7513- 100ML; Sigma Aldrich), 50 units/ml of penicillin, and 50 μg/ml of streptomycin (P0781-100ML; Sigma Aldrich). 1 mM DMOG for 16 hours total RNA was prepared using mirVanaTM miRNA isolation kit (AM1560; Life Technologies), according to manufacturer’s protocol. Genomic DNA was removed from RNA samples using TURBO DNA-freeTM Kit (AM1907; Life Technologies) according to the manufacturer’s protocol. poly-A selection from total RNA

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: dimethyl N-oxalyl glycine


text: Kennedy Institute of Rheumatology

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Protocols: Human cell lines (MCF-7) were cultured in DMEM (D6546-500ML; Sigma Aldrich) each supplemented with 10% fetal bovine serum (F7524-500ML; Sigma Aldrich), 2 mM L-glutamine (G7513- 100ML; Sigma Aldrich), 50 units/ml of penicillin, and 50 μg/ml of streptomycin (P0781-100ML; Sigma Aldrich). 0.5% oxygen for 16 hours total RNA was prepared using mirVanaTM miRNA isolation kit (AM1560; Life Technologies), according to manufacturer’s protocol. Genomic DNA was removed from RNA samples using TURBO DNA-freeTM Kit (AM1907; Life Technologies) according to the manufacturer’s protocol. poly-A selection from total RNA

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: 0.5% oxygen


text: Kennedy Institute of Rheumatology

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Human cell lines (MCF-7) were cultured in DMEM (D6546-500ML; Sigma Aldrich) each supplemented with 10% fetal bovine serum (F7524-500ML; Sigma Aldrich), 2 mM L-glutamine (G7513- 100ML; Sigma Aldrich), 50 units/ml of penicillin, and 50 μg/ml of streptomycin (P0781-100ML; Sigma Aldrich). 250 μM IOX2 for 16 hours total RNA was prepared using mirVanaTM miRNA isolation kit (AM1560; Life Technologies), according to manufacturer’s protocol. Genomic DNA was removed from RNA samples using TURBO DNA-freeTM Kit (AM1907; Life Technologies) according to the manufacturer’s protocol. poly-A selection from total RNA

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: Kennedy Institute of Rheumatology

text: public

text: ArrayExpress

text: human

text: Protocols: Human cell lines (MCF-7) were cultured in DMEM (D6546-500ML; Sigma Aldrich) each supplemented with 10% fetal bovine serum (F7524-500ML; Sigma Aldrich), 2 mM L-glutamine (G7513- 100ML; Sigma Aldrich), 50 units/ml of penicillin, and 50 μg/ml of streptomycin (P0781-100ML; Sigma Aldrich). DMSO for 16 hours total RNA was prepared using mirVanaTM miRNA isolation kit (AM1560; Life Technologies), according to manufacturer’s protocol. Genomic DNA was removed from RNA samples using TURBO DNA-freeTM Kit (AM1907; Life Technologies) according to the manufacturer’s protocol. poly-A selection from total RNA

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF MICHIGAN

text: public

tag: Namespace:UNIVERSITY OF MICHIGAN

text: baker's yeast

text: DRIP IP

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: BY4741 DRIP IP


text: UNIVERSITY OF MICHIGAN

text: public

text: baker's yeast

text: DRIP input

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: BY4741 DRIP Input

characteristic: title


characteristic: ENA-CHECKLIST

text: UTRECHT UNIVERSITY

text: public

tag: Namespace:UTRECHT UNIVERSITY

text: reads of E. coli K12 with plasmid 118-2

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid 527-1

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid 707-3

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid 713-4

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid 754-7

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid 762-6

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid UMC323

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid UMC606

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid 047

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid 546

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: reads of E. coli K12 with plasmid 286

text: Escherichia coli

text: Escherichia coli


text: CEBITEC

text: public

text: Xanthomonas translucens pv. translucens DSM 18974


text: Universita degli studi di Milano

text: public

tag: Namespace:Universita degli studi di Milano

characteristic: collection date

text: river

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: Lambro

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universita degli studi di Milano

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: river

text: Italy

text: metagenome

text: metagenome

text: Lambro

text: metagenome

text: Ion Torrent

text: water


UCL 0651

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY COLLEGE LONDON

text: public

text: UCL 0651

tag: Namespace:UNIVERSITY COLLEGE LONDON

text: human

characteristic: common name

text: HD, LPS-Stimulated

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Monocyte RNA-Seq Samples

characteristic: title


text: UNIVERSITY COLLEGE LONDON

text: public

text: human

text: HD, Unstimulated

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


text: TUM

text: public

text: human

text: Human fecal sample used for sequencing internal control

text: Homo sapiens

characteristic: run date

text: Homo sapiens


text: UCSDMI

text: public

text: FALSE

characteristic: birthwtwhosd

characteristic: bmiwhozscore

characteristic: childage

text: S

characteristic: childsecretorstatus

characteristic: collection time

text: EC

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: familyincome

text: M

characteristic: feedingbroad

text: M

characteristic: gender

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: S

characteristic: mothersecretorstatus

text: S

text: Missing: Not provided

text: human gut metagenome

text: Centre for Children's Health Research, University of Queensland, Australia

text: TRUE

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: Maternal secretor status and child microbiota composition


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TRUE

characteristic: birthwtwhosd

characteristic: bmiwhozscore

characteristic: childage

text: S

characteristic: childsecretorstatus

characteristic: collection time

text: V

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: E

text: M

text: Homo sapiens

text: S

text: S

text: S

text: human gut metagenome

characteristic: organism

text: TRUE

text: stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: FALSE

text: S

text: V

text: omit

text: child faeces

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: familyincome

text: M

characteristic: feedingbroad

text: F

characteristic: gender

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: S

characteristic: mothersecretorstatus

text: S

text: Missing: Not provided

text: human gut metagenome

text: TRUE

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TRUE

characteristic: birthwtwhosd

characteristic: bmiwhozscore

characteristic: childage

text: S

characteristic: childsecretorstatus

characteristic: collection time

text: EC

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: E

text: M

text: Homo sapiens

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: TRUE

text: stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: TRUE

text: Missing: Not provided

text: V

text: omit

text: child faeces

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: familyincome

text: E

characteristic: feedingbroad

text: M

characteristic: gender

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

characteristic: mothersecretorstatus

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: TRUE

text: Missing: Not provided

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: FALSE

characteristic: birthwtwhosd

characteristic: bmiwhozscore

characteristic: childage

text: Missing: Not provided

characteristic: childsecretorstatus

characteristic: collection time

text: EC

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: E

text: F

text: Homo sapiens

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: TRUE

text: stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: TRUE

text: S

text: V

text: omit

text: child faeces

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: familyincome

text: E

characteristic: feedingbroad

text: F

characteristic: gender

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: S

characteristic: mothersecretorstatus

text: S

text: S

text: human gut metagenome

text: TRUE

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TRUE

characteristic: birthwtwhosd

characteristic: bmiwhozscore

characteristic: childage

text: N

characteristic: childsecretorstatus

characteristic: collection time

text: V

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: F

text: M

text: Homo sapiens

text: N

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: TRUE

text: stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: FALSE

text: Missing: Not provided

text: V

text: omit

text: child faeces

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: familyincome

text: E

characteristic: feedingbroad

text: F

characteristic: gender

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: N

characteristic: mothersecretorstatus

text: N

text: N

text: human gut metagenome

text: TRUE

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: FALSE

characteristic: birthwtwhosd

characteristic: bmiwhozscore

characteristic: childage

text: S

characteristic: childsecretorstatus

characteristic: collection time

text: V

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: E

text: M

text: Homo sapiens

text: S

text: S

text: S

text: human gut metagenome

characteristic: organism

text: TRUE

text: stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: FALSE

text: N

text: V

text: omit

text: child faeces

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Missing: Not provided

characteristic: familyincome

text: E

characteristic: feedingbroad

text: M

characteristic: gender

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

characteristic: mothersecretorstatus

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: TRUE

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TRUE

characteristic: birthwtwhosd

characteristic: bmiwhozscore

characteristic: childage

text: Missing: Not provided

characteristic: childsecretorstatus

characteristic: collection time

text: V

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: E

text: M

text: Homo sapiens

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: TRUE

text: stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: TRUE

text: N

text: V

text: omit

text: child faeces

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: familyincome

text: M

characteristic: feedingbroad

text: M

characteristic: gender

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

characteristic: mothersecretorstatus

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: TRUE

text: Missing: Not provided

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TRUE

text: Missing: Not provided

characteristic: birthwtwhosd

characteristic: bmiwhozscore

characteristic: childage

text: S

characteristic: childsecretorstatus

characteristic: collection time

text: Missing: Not provided

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: E

text: F

text: Homo sapiens

text: N

text: N

text: N

text: human gut metagenome

characteristic: organism

text: TRUE

text: stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: FALSE

text: Missing: Not provided

text: V

text: omit

text: child faeces

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: familyincome

text: E

characteristic: feedingbroad

text: F

characteristic: gender

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

characteristic: mothersecretorstatus

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: TRUE

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: FALSE

characteristic: birthwtwhosd

characteristic: bmiwhozscore

characteristic: childage

text: S

characteristic: childsecretorstatus

characteristic: collection time

text: EC

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: E

text: M

text: Homo sapiens

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: TRUE

text: stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: FALSE

text: N

text: EC

text: omit

text: child faeces

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: familyincome

text: E

characteristic: feedingbroad

text: F

characteristic: gender

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

characteristic: mothersecretorstatus

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: TRUE

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

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text: human gut metagenome

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text: Missing: Not provided

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text: Missing: Not provided

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text: Missing: Not provided

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: TRUE

text: Missing: Not provided

text: V

text: omit

text: child faeces

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characteristic: elevation

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characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

characteristic: mothersecretorstatus

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: TRUE

text: Missing: Not provided

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characteristic: sample type

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characteristic: ENA-FIRST-PUBLIC

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text: UCSDMI

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text: Missing: Not provided

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text: TRUE

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text: Missing: Not provided

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text: Missing: Not provided

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text: human gut metagenome

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text: Missing: Not provided

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text: N

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text: Missing: Not provided

text: Missing: Not provided

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text: TRUE

text: Missing: Not provided

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characteristic: sample type

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text: V

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text: urban biome

text: human-associated habitat

text: human-gut

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text: E

text: M

text: Homo sapiens

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

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text: Missing: Not provided

text: Missing: Not provided

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text: S

text: S

text: human gut metagenome

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text: human-associated habitat

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characteristic: host taxid

characteristic: latitude

characteristic: longitude

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characteristic: mothersecretorstatus

text: N

text: Missing: Not provided

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text: TRUE

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: male

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: UCSDMI

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characteristic: INSDC last update

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text: E

text: F

text: Homo sapiens

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: TRUE

text: Missing: Not provided

text: stool

text: human gut metagenome

text: female

characteristic: title


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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: TRUE

text: Missing: Not provided

text: N

text: Missing: Not provided

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text: child faeces

text: TRUE

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text: urban biome

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characteristic: longitude

text: Missing: Not provided

characteristic: mothersecretorstatus

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: TRUE

characteristic: prepregbmi

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: UCSDMI

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characteristic: INSDC last update

text: public

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characteristic: SRA accession

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text: FALSE

text: Missing: Not provided

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characteristic: bmiwhozscore

characteristic: childage

text: S

characteristic: childsecretorstatus

characteristic: collection time

text: Missing: Not provided

characteristic: deliverymode

text: omit

characteristic: depth

text: child faeces

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Missing: Not provided

text: M

text: Homo sapiens

text: S

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: TRUE

text: stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Molecular Biosciences

text: public

tag: Namespace:Institute for Molecular Biosciences

text: 4 venom glands

characteristic: amount or size of sample collected

text: BRAEMBL

characteristic: broker name

characteristic: collection date

text: Nucleic acid sequences and peptide sequences from venom-gland preparations from the Australian funnel-web spider Hadronyche formidabilis.

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: lat lon

text: Hadronyche formidabilis

text: All spiders used for complementary DNA (cDNA) library construction were first anesthetized using CO2, frozen at â80Â°C for 10 min, and then dissected at 4Â°C. To access the venom gland, the chelicerr ae were first removed from the base of the structure (towards the carapace). Once separated, each chelicera was individually cut from the ventral side up to the base of the fang in order to approach the venom gland from underneath. The cheliceral muscle that surrounds the venom gland was detached to expose the isolated venom gland. Dissected venom glands were placed immediately in TRIzolÂ® reagent (Invitrogen) to be processed.

characteristic: sample material processing

text: Hadronyche formidabilis

text: Hadronyche formidabilis


text: INRA-MIG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Bacillus weihenstephanensis INRA 5

text: Bacillus weihenstephanensis

text: Bacillus weihenstephanensis

text: INRA 5

characteristic: strain

text: Bacillus weihenstephanensis INRA 5