characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_1288:1288.WSBH27Aug07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.7.1.sequence

characteristic: altitude

characteristic: anonymized name

text: FALSE

text: 8/27/07 0:00

text: freshwater metagenome

text: GAZ:United States of America

text: freshwater metagenome WSBH27Aug07

characteristic: description

text: TRUE

characteristic: elevation

text: small lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: fresh water

characteristic: env matter

text: water

characteristic: env package

text: fresh water

text: TRUE

text: USA:WI

text: fresh water

characteristic: longitude

text: freshwater metagenome

characteristic: organism

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

text: Temperate Bog Lakes

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_1288:1288.WSBH27July07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.1.1.sequence

characteristic: Submitter Id

text: FALSE

text: 7/27/07 0:00

text: freshwater metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

text: freshwater metagenome WSBH27July07

text: TRUE

text: small lake biome

text: freshwater lake

text: fresh water

text: water

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: USA:WI

characteristic: geo loc name

text: fresh water

characteristic: host subject id

characteristic: latitude

text: freshwater metagenome

text: ANL

text: TRUE

text: TRUE

text: completed

text: fresh water

characteristic: sample type

text: sequenced (16S)

text: freshwater metagenome

characteristic: temp

text: Temperate Bog Lakes

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_1288:1288.WSBH27July07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.7.1.sequence

characteristic: altitude

characteristic: anonymized name

text: FALSE

text: 7/27/07 0:00

text: freshwater metagenome

text: GAZ:United States of America

text: freshwater metagenome WSBH27July07

characteristic: description

text: TRUE

characteristic: elevation

text: small lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: fresh water

characteristic: env matter

text: water

characteristic: env package

text: fresh water

text: TRUE

text: USA:WI

text: fresh water

characteristic: longitude

text: freshwater metagenome

characteristic: organism

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

text: Temperate Bog Lakes

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_1288:1288.WSBH27June07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.1.1.sequence

characteristic: Submitter Id

text: FALSE

text: 6/27/07 0:00

text: freshwater metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

text: freshwater metagenome WSBH27June07

text: TRUE

text: small lake biome

text: freshwater lake

text: fresh water

text: water

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: USA:WI

characteristic: geo loc name

text: fresh water

characteristic: host subject id

characteristic: latitude

text: freshwater metagenome

text: ANL

text: TRUE

text: TRUE

text: completed

text: fresh water

characteristic: sample type

text: sequenced (16S)

text: freshwater metagenome

text: Temperate Bog Lakes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_1288:1288.WSBH27June07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.7.1.sequence

characteristic: altitude

characteristic: anonymized name

text: FALSE

text: 6/27/07 0:00

text: freshwater metagenome

text: GAZ:United States of America

text: freshwater metagenome WSBH27June07

characteristic: description

text: TRUE

characteristic: elevation

text: small lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: fresh water

characteristic: env matter

text: water

characteristic: env package

text: fresh water

text: TRUE

text: USA:WI

text: fresh water

characteristic: longitude

text: freshwater metagenome

characteristic: organism

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

characteristic: temp

text: Temperate Bog Lakes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_1288:1288.WSBH29July07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.1.1.sequence

characteristic: Submitter Id

text: FALSE

text: 7/29/07 0:00

text: freshwater metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

text: freshwater metagenome WSBH29July07

text: TRUE

text: small lake biome

text: freshwater lake

text: fresh water

text: water

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: USA:WI

characteristic: geo loc name

text: fresh water

characteristic: host subject id

characteristic: latitude

text: freshwater metagenome

text: ANL

text: TRUE

text: TRUE

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

text: Temperate Bog Lakes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_1288:1288.WSBH29July07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.7.1.sequence

characteristic: altitude

characteristic: anonymized name

text: FALSE

text: 7/29/07 0:00

text: freshwater metagenome

text: GAZ:United States of America

text: freshwater metagenome WSBH29July07

characteristic: description

text: TRUE

characteristic: elevation

text: small lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: fresh water

characteristic: env matter

text: water

characteristic: env package

text: fresh water

text: TRUE

text: USA:WI

text: fresh water

characteristic: longitude

text: freshwater metagenome

characteristic: organism

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: fresh water

characteristic: sample type

text: sequenced (16S)

text: freshwater metagenome

text: Temperate Bog Lakes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_1288:1288.WSBH30Oct07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.1.1.sequence

characteristic: Submitter Id

text: FALSE

text: 10/30/07 0:00

text: freshwater metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

text: freshwater metagenome WSBH30Oct07

text: TRUE

text: small lake biome

text: freshwater lake

text: fresh water

text: water

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: USA:WI

characteristic: geo loc name

text: fresh water

characteristic: host subject id

characteristic: latitude

text: freshwater metagenome

text: ANL

text: TRUE

text: TRUE

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

characteristic: temp

text: Temperate Bog Lakes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_1288:1288.WSBH30Oct07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.7.1.sequence

characteristic: altitude

characteristic: anonymized name

text: FALSE

text: 10/30/07 0:00

text: freshwater metagenome

text: GAZ:United States of America

text: freshwater metagenome WSBH30Oct07

characteristic: description

text: TRUE

characteristic: elevation

text: small lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: fresh water

characteristic: env matter

text: water

characteristic: env package

text: fresh water

text: TRUE

text: USA:WI

text: fresh water

characteristic: longitude

text: freshwater metagenome

characteristic: organism

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

text: Temperate Bog Lakes

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_1288:1288.WSBH31July07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.1.1.sequence

characteristic: Submitter Id

text: FALSE

text: 7/31/07 0:00

text: freshwater metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

text: freshwater metagenome WSBH31July07

text: TRUE

text: small lake biome

text: freshwater lake

text: fresh water

text: water

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: USA:WI

characteristic: geo loc name

text: fresh water

characteristic: host subject id

characteristic: latitude

text: freshwater metagenome

text: ANL

text: TRUE

text: TRUE

text: completed

text: fresh water

characteristic: sample type

text: sequenced (16S)

text: freshwater metagenome

text: Temperate Bog Lakes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_1288:1288.WSBH31July07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.7.1.sequence

characteristic: altitude

characteristic: anonymized name

text: FALSE

text: 7/31/07 0:00

text: freshwater metagenome

text: GAZ:United States of America

text: freshwater metagenome WSBH31July07

characteristic: description

text: TRUE

characteristic: elevation

text: small lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: fresh water

characteristic: env matter

text: water

characteristic: env package

text: fresh water

text: TRUE

text: USA:WI

text: fresh water

characteristic: longitude

text: freshwater metagenome

characteristic: organism

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

characteristic: temp

text: Temperate Bog Lakes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_1288:1288.WSBH31May07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.1.1.sequence

characteristic: Submitter Id

text: FALSE

text: 5/31/07 0:00

text: freshwater metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

text: freshwater metagenome WSBH31May07

text: TRUE

text: small lake biome

text: freshwater lake

text: fresh water

text: water

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: USA:WI

characteristic: geo loc name

text: fresh water

characteristic: host subject id

characteristic: latitude

text: freshwater metagenome

text: ANL

text: TRUE

text: TRUE

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

text: Temperate Bog Lakes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_1288:1288.WSBH31May07.McMahon.Pool.1.and.1percentPhiX.110310.HWUSI.EAS552R.0357.s.7.1.sequence

characteristic: altitude

characteristic: anonymized name

text: FALSE

text: 5/31/07 0:00

text: freshwater metagenome

text: GAZ:United States of America

text: freshwater metagenome WSBH31May07

characteristic: description

text: TRUE

characteristic: elevation

text: small lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: fresh water

characteristic: env matter

text: water

characteristic: env package

text: fresh water

text: TRUE

text: USA:WI

text: fresh water

characteristic: longitude

text: freshwater metagenome

characteristic: organism

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: completed

text: fresh water

characteristic: sample type

text: sequenced (16S)

text: freshwater metagenome

text: Temperate Bog Lakes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: collection date

text: Denmark

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Bacteremia

characteristic: isolation source host associated

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: title


text: public

text: Germany

text: Homo sapiens

text: Yes

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

text: EESC/USP

text: public

text: Anerobic Reactor

characteristic: environment (biome)

text: Anerobic Reactor

characteristic: environment (feature)

text: Granular sludge

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: co-digestion of commercial laundry wastewater and domestic sewage

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF WARWICK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sample 2

tag: Namespace:UNIVERSITY OF WARWICK

characteristic: Submitter Id

text: bis-Mannich base resistance mutant

characteristic: description

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis mutants


Sample 3

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF WARWICK

text: public

text: Sample 3

text: bis-Mannich base resistance mutant

text: Mycobacterium smegmatis str. MC2 155

characteristic: organism

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis mutants

characteristic: title


Sample 4

text: UNIVERSITY OF WARWICK

text: public

text: Sample 4

text: bis-Mannich base resistance mutant

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis mutants


Sample 5

text: UNIVERSITY OF WARWICK

text: public

text: Sample 5

text: bis-Mannich base resistance mutant

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis mutants


Sample 6

text: UNIVERSITY OF WARWICK

text: public

text: Sample 6

text: Mycobacterium smegmatis resequencing of WT control

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis mutants


Sample 7

text: UNIVERSITY OF WARWICK

text: public

text: Sample 7

text: piperidinol resistance mutant

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis mutants


Sample 8

text: UNIVERSITY OF WARWICK

text: public

text: Sample 8

text: piperidinol resistance mutant

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis mutants


Sample 10

text: UNIVERSITY OF WARWICK

text: public

text: Sample 10

text: piperidinol resistance mutant

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis mutants


Sample 11

text: UNIVERSITY OF WARWICK

text: public

text: Sample 11

text: Resequencing of WT Mycobacterium smegmatis used as a control

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis mutants


text: BIOCANT

text: public

characteristic: collection date

unit: m

characteristic: depth

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: +38º 55’ 57.72’’

characteristic: geographic location (latitude)

text: -8º 21’ 19.49’’

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Quercus suber

text: RhizoCork

text: Quercus suber

text: Pyrosequencing

text: soil

characteristic: soil environmental package

text: Rhizosphere soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: TUFTS UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:TUFTS UNIVERSITY

text: abdomen, 03/11/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

characteristic: tissue type

text: Dog #7


characteristic: ENA-LAST-UPDATE

text: TUFTS UNIVERSITY

text: public

characteristic: Submitter Id

text: abdomen, 03/11/14

characteristic: description

text: unidentified bacterium

characteristic: organism

text: unidentified bacterium

text: skin

text: Dog #2

characteristic: title


text: TUFTS UNIVERSITY

text: public

text: pinna, 03/11/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #7


text: TUFTS UNIVERSITY

text: public

text: pinna, 03/11/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: abdomen, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: pinna, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #6


text: TUFTS UNIVERSITY

text: public

text: abdomen, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: pinna, 06/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: pinna, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #5


text: TUFTS UNIVERSITY

text: public

text: pinna, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: pinna, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #4


text: TUFTS UNIVERSITY

text: public

text: pinna, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: abdomen, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #6


text: TUFTS UNIVERSITY

text: public

text: pinna, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: pinna, 06/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: abdomen, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #5


text: TUFTS UNIVERSITY

text: public

text: abdomen, 06/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: abdomen, 005/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #4


text: TUFTS UNIVERSITY

text: public

text: abdomen, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: abdomen, 06/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: abdomen, 06/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: abdomen, 05/21/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #4


text: TUFTS UNIVERSITY

text: public

text: pinna, 06/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: abdomen, 07/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: pinna, 08/12/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: pinna, 10/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: pinna, 07/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: pinna, 08/12/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: pinna, 07/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: abdomen, 09/10/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: abdomen, 08/12/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: pinna, 10/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: abdomen, 10/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: abdomen, 09/10/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: pinna, 08/12/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: abdomen, 07/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: abdomen, 08/12/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: pinna, 09/10/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: pinna, 09/10/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: pinna, 09/10/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


text: TUFTS UNIVERSITY

text: public

text: abdomen, 09/10/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: abdomen, 08/12/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: pinna, 10/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: abdomen, 10/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: abdomen, 07/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #1


text: TUFTS UNIVERSITY

text: public

text: abdomen, 10/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #2


text: TUFTS UNIVERSITY

text: public

text: pinna, 07/09/14

text: unidentified bacterium

text: unidentified bacterium

text: skin

text: Dog #3


E-MTAB-5027:Sample 1

text: public

text: E-MTAB-5027:Sample 1

tag: Namespace:Department of Molecular Neuroscience at the UCL Institute of Neurology. http://ulelab.info/

text: NNNCCACNN

characteristic: barcode

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: HEK293 cells were crosslinked with 0.15mJ/cm2 254nm UV light. Following the iCLIP protocol the retrieval of protein-bound RNAs and construction of Illumina compatible libraries was done as described in Huppertz et al, 2014. The 3 prime adapter sequence is AGATCGGAAG

text: replicate 1

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 1


E-MTAB-5027:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Department of Molecular Neuroscience at the UCL Institute of Neurology. http://ulelab.info/

text: public

text: E-MTAB-5027:Sample 2

text: NNNTTAANN

text: ArrayExpress

text: human

text: replicate 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-5027:Sample 3

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5027:Sample 3

text: NNNAATANN

text: ArrayExpress

text: human

text: replicate 3

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 3


E-MTAB-5027:Sample 4

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5027:Sample 4

text: NNNTGGCNN

text: ArrayExpress

text: human

text: replicate 4

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 4


Pseudomonas frederiksbergensis FW305-62

characteristic: ENA-LAST-UPDATE

text: OAK RIDGE NATIONAL LABORATORY

text: public

text: Pseudomonas frederiksbergensis FW305-62

tag: Namespace:OAK RIDGE NATIONAL LABORATORY

characteristic: Submitter Id

text: Pseudomonas frederiksbergensis

text: Pseudomonas frederiksbergensis

text: Pseudomonas frederiksbergensis FW305-62


text: public

tag: Namespace:Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

text: ArrayExpress

text: thale cress

text: Protocols: Plants were flash-frozen in liquid nitrogen immediately upon harvest. RNAlater®-ICE (Ambion®), which prevents RNA from degrading, was cooled at -70°C, added to the samples and was allowed to penetrate the tissue at -20°C for 5 days. The third leaf was collected by microdissection under a microscope. Samples were microdissected in a Petri dish on dry ice to keep the samples below room temperature. Arabidopsis thaliana (L.) Heynh accessions were grown in a growth chamber under controlled environmental conditions (21°C, 55% relative humidity, 16¬ h day/ 8 h night, 110-120 μmol m-2 s-1 light intensity). Plants were germinated in soil-filled 96-well plates after four days of stratification at 4°C in the dark. Seedlings were transferred to pots at four days after stratification (DAS). Average-sized seedlings were selected using an in-house developed image algorithm in order to reduce seedling size effects at the beginning of the experiment. Before transfer, the relative water content of the pots was set at 1.2 g H2O/g dry soil for the mild drought treatment, the control condition was set at 2.2 g H2O/g dry soil. Once the seedlings were transferred to pots, they were placed on the automated phenotyping platform WIWAM (Skirycz et al., 2011b). The water content of the soil was kept constant until 10 DAS, after which it was lowered daily to target 0.7 g H2O/g dry soil for the mild drought treated plants (Fig. 1D). Pictures of the rosette of each plant were taken daily until 21 DAS and analyzed for the projected rosette area (PRA) (Skirycz et al., 2011b). Dissected leaves were ground with a Retsch machine (Retsch) and 3-mm metal balls. Samples were obtained from 3 independent biological repeats. RNA was extracted with TriZol (Invitrogen) according to the manufacturer’s instructions. RNA samples were subjected to DNA digestion with RNase-free DNase I kit (Qiagen), and subsequently, impurities were removed with the RNeasy mini kit (Qiagen). Library preparation was done using the TruSeq RNA Sample Preparation Kit v2 (Illumina). In brief, polyA containing mRNA molecules are reverse transcribed, double-stranded cDNA is generated and adapters are ligated. After quality control using 2100 Bioanalyzer (Agilent), clusters are generated through amplification using the TruSeq PE Cluster Kit v3-cBot-HS kit (Illumina) followed by sequencing on a Illumina HiSeq2000 with the TruSeq SBS Kit v3-HS (Illumina).

characteristic: description

text: Proliferative tissue

characteristic: developmental stage

characteristic: ecotype

text: control

characteristic: environmental stress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana


text: Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

text: public

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Proliferative tissue

text: Mild drought stress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: thale cress

text: Proliferative tissue

text: control

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

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characteristic: INSDC center name

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text: public

text: ArrayExpress

text: thale cress

text: Proliferative tissue

text: control

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

characteristic: technical replicate


characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: Proliferative tissue

text: Mild drought stress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana


text: public

text: ArrayExpress

text: thale cress

characteristic: description

text: Proliferative tissue

characteristic: developmental stage

text: Kondara

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text: control

characteristic: environmental stress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana


text: public

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Proliferative tissue

text: Kondara

text: Mild drought stress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: thale cress

text: Proliferative tissue

text: Sha

text: control

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: thale cress

text: Proliferative tissue

text: Sha

text: Mild drought stress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: thale cress

text: Proliferative tissue

text: Sorbo

text: control

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana


text: public

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: description

text: Proliferative tissue

characteristic: developmental stage

text: Sorbo

text: Mild drought stress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana


Pseudomonas frederiksbergensis FW305-53

text: OAK RIDGE NATIONAL LABORATORY

text: public

text: Pseudomonas frederiksbergensis FW305-53

text: Pseudomonas frederiksbergensis FW305-53

text: Pseudomonas frederiksbergensis

text: Pseudomonas frederiksbergensis

text: Pseudomonas frederiksbergensis FW305-53


Pseudomonas putida FW305-E2

text: OAK RIDGE NATIONAL LABORATORY

text: public

text: Pseudomonas putida FW305-E2

text: Pseudomonas putida

text: Pseudomonas putida

text: Pseudomonas putida FW305-E2


text: UCSDMI

text: public

text: 12/03/2013 16:00

text: domestic pig

text: true

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

characteristic: sample type

text: Sus scrofa domesticus


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 21/04/2013 16:00

text: domestic pig

characteristic: common name

text: true

text: Sus scrofa domesticus

characteristic: organism

text: University of Queensland Brisbane

text: true

text: faeces

text: Sus scrofa domesticus


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSDMI

text: public

text: 12/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 9/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 17/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: Submitter Id

text: 10/04/2013 16:00

text: domestic pig

characteristic: description

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 11/05/2013 16:00

text: domestic pig

text: true

characteristic: host subject id

characteristic: latitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: faeces

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 11/03/2013 16:00

text: domestic pig

text: true

characteristic: longitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

characteristic: sample type

text: Sus scrofa domesticus


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 26/05/2013 16:00

text: domestic pig

characteristic: common name

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 30/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

characteristic: organism

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: External Id

text: UCSDMI

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text: 24/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 4/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

text: 22/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: faeces

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 25/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: Submitter Id

text: 30/05/2013 16:00

text: domestic pig

characteristic: description

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 20/05/2013 16:00

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text: true

characteristic: host subject id

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text: Sus scrofa domesticus

text: University of Queensland Brisbane

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text: UCSDMI

text: public

text: 23/04/2013 16:00

text: domestic pig

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characteristic: longitude

text: Sus scrofa domesticus

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characteristic: sample type

text: Sus scrofa domesticus


characteristic: ENA-CHECKLIST

text: UCSDMI

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text: 13/04/2013 16:00

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characteristic: common name

text: true

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text: University of Queensland Brisbane

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text: faeces

text: Sus scrofa domesticus


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 18/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

characteristic: organism

text: University of Queensland Brisbane

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text: digesta

text: Sus scrofa domesticus


characteristic: External Id

text: UCSDMI

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text: 10/03/2013 16:00

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text: University of Queensland Brisbane

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characteristic: title


text: UCSDMI

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text: public

text: 21/03/2013 16:00

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text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

text: UCSDMI

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text: public

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text: Sus scrofa domesticus

text: University of Queensland Brisbane

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text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 3/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

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text: Sus scrofa domesticus


text: UCSDMI

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characteristic: Submitter Id

text: 15/05/2013 16:00

text: domestic pig

characteristic: description

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

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text: Sus scrofa domesticus


text: UCSDMI

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text: 2/04/2013 16:00

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characteristic: host subject id

characteristic: latitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

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text: 27/05/2013 16:00

text: domestic pig

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characteristic: longitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

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text: digesta

characteristic: sample type

text: Sus scrofa domesticus


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 23/05/2013 16:00

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characteristic: common name

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 7/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

characteristic: organism

text: University of Queensland Brisbane

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text: digesta

text: Sus scrofa domesticus


characteristic: External Id

text: UCSDMI

text: public

text: 2/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus

characteristic: title


text: UCSDMI

characteristic: INSDC center name

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text: public

text: 13/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

text: 21/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 22/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: Submitter Id

text: 26/03/2013 16:00

text: domestic pig

characteristic: description

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: faeces

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 1/04/2013 16:00

text: domestic pig

text: true

characteristic: host subject id

characteristic: latitude

text: Sus scrofa domesticus

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text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 10/05/2013 16:00

text: domestic pig

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characteristic: longitude

text: Sus scrofa domesticus

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text: true

text: digesta

characteristic: sample type

text: Sus scrofa domesticus


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text: UCSDMI

text: public

text: 18/05/2013 16:00

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characteristic: common name

text: true

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text: digesta

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characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 11/04/2013 16:00

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characteristic: organism

text: University of Queensland Brisbane

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text: digesta

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characteristic: External Id

text: UCSDMI

text: public

text: 17/04/2013 16:00

text: domestic pig

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text: faeces

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characteristic: title


text: UCSDMI

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text: public

text: 12/05/2013 16:00

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characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

text: 1/05/2013 16:00

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text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

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text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 24/04/2013 16:00

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text: University of Queensland Brisbane

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text: UCSDMI

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characteristic: Submitter Id

text: 6/04/2013 16:00

text: domestic pig

characteristic: description

text: true

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text: 8/04/2013 16:00

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characteristic: host subject id

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text: Sus scrofa domesticus

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text: UCSDMI

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text: 22/05/2013 16:00

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characteristic: longitude

text: Sus scrofa domesticus

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text: Sus scrofa domesticus


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text: UCSDMI

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text: true

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text: University of Queensland Brisbane

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characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 20/03/2013 16:00

text: domestic pig

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text: Sus scrofa domesticus

characteristic: organism

text: University of Queensland Brisbane

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text: digesta

text: Sus scrofa domesticus


characteristic: External Id

text: UCSDMI

text: public

text: 8/03/2013 16:00

text: domestic pig

text: true

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text: University of Queensland Brisbane

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characteristic: title


text: UCSDMI

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text: public

text: 23/03/2013 16:00

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text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

text: UCSDMI

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text: public

text: 25/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: faeces

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text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 26/04/2013 16:00

text: domestic pig

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text: Sus scrofa domesticus

text: University of Queensland Brisbane

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text: UCSDMI

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characteristic: Submitter Id

text: 1/06/2013 16:00

text: domestic pig

characteristic: description

text: true

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text: UCSDMI

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text: 4/04/2013 16:00

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characteristic: host subject id

characteristic: latitude

text: Sus scrofa domesticus

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text: UCSDMI

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text: 31/03/2013 16:00

text: domestic pig

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characteristic: longitude

text: Sus scrofa domesticus

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text: Sus scrofa domesticus


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text: UCSDMI

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characteristic: common name

text: true

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characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

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text: 16/04/2013 16:00

text: domestic pig

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text: Sus scrofa domesticus

characteristic: organism

text: University of Queensland Brisbane

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text: Sus scrofa domesticus


characteristic: External Id

text: UCSDMI

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text: 27/03/2013 16:00

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text: Sus scrofa domesticus

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 14/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: faeces

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

text: 14/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 14/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: Submitter Id

text: 28/03/2013 16:00

text: domestic pig

characteristic: description

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 6/03/2013 16:00

text: domestic pig

text: true

characteristic: host subject id

characteristic: latitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 5/05/2013 16:00

text: domestic pig

text: true

characteristic: longitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

characteristic: sample type

text: Sus scrofa domesticus


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 24/05/2013 16:00

text: domestic pig

characteristic: common name

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 7/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

characteristic: organism

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: External Id

text: UCSDMI

text: public

text: 31/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2/06/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

text: 16/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: Submitter Id

text: 17/03/2013 16:00

text: domestic pig

characteristic: description

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 18/04/2013 16:00

text: domestic pig

text: true

characteristic: host subject id

characteristic: latitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 15/04/2013 16:00

text: domestic pig

text: true

characteristic: longitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

characteristic: sample type

text: Sus scrofa domesticus


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 29/05/2013 16:00

text: domestic pig

characteristic: common name

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 30/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

characteristic: organism

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: External Id

text: UCSDMI

text: public

text: 28/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 19/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

text: 3/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: faeces

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 16/05/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: Submitter Id

text: 13/05/2013 16:00

text: domestic pig

characteristic: description

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 28/04/2013 16:00

text: domestic pig

text: true

characteristic: host subject id

characteristic: latitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

text: 25/05/2013 16:00

text: domestic pig

text: true

characteristic: longitude

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

characteristic: sample type

text: Sus scrofa domesticus


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 7/03/2013 16:00

text: domestic pig

characteristic: common name

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: 9/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

characteristic: organism

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: External Id

text: UCSDMI

text: public

text: 15/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

text: 27/04/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 19/03/2013 16:00

text: domestic pig

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: UCSDMI

text: public

characteristic: Submitter Id

text: 29/03/2013 16:00

text: domestic pig

characteristic: description

text: true

text: Sus scrofa domesticus

text: University of Queensland Brisbane

text: true

text: digesta

text: Sus scrofa domesticus


text: public

tag: Namespace:SWISS FEDERAL INSTITUTE OF TECHNOLOGY ZURICH

text: house mouse

text: Sample 1179 2weeks post-op

text: Mus musculus

text: Mus musculus

characteristic: time point after surgery

text: Skin from Mouse tails

characteristic: tissue type


text: SWISS FEDERAL INSTITUTE OF TECHNOLOGY ZURICH

text: public

text: house mouse

text: Sample 1193 2weeks post-op

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1198 6weeks post-op

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1199 6weeks post-op

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1200 6weeks post-op

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1203 6weeks post-op

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1222 2weeks post-op

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1223 2weeks post-op

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1221 2weeks post-op

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1414 Control

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1419 Control

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1427 Control

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1428 Control

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

text: house mouse

text: Sample 1429 Control

text: Mus musculus

text: Mus musculus

text: Skin from Mouse tails


text: public

characteristic: collection date

text: Trinidad&Tobago

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: 9/28/10 0:00

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: depth

text: TRUE

characteristic: elevation

text: large river biome

characteristic: env biome

text: dam

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

characteristic: extracted DNA avail now

text: CrustControl

characteristic: host subject id

characteristic: hour

characteristic: latitude

characteristic: longitude

text: soil metagenome

characteristic: organism

text: CCME

text: TRUE

text: TRUE

characteristic: public

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

text: MokiCamp

characteristic: site

text: MokiCamp

characteristic: site name

text: RECOVERY OF BIOLOGICAL SOIL CRUST-LIKE MICROBIAL COMMUNITIES IN PREVIOUSLY SUBMERGED SOILS OF GLEN CANYON


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: 9/30/10 0:00

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

text: large river biome

text: dam

text: soil

text: soil

text: soil

text: TRUE

text: soil metagenome

text: CCME

text: TRUE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: Hcanyon

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: TRUE

text: 9/30/10 0:00

text: soil metagenome

text: GAZ:United States of America

text: TRUE

characteristic: elevation

text: large river biome

characteristic: env biome

text: dam

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

characteristic: extracted DNA avail now

characteristic: host subject id

characteristic: hour

characteristic: latitude

characteristic: longitude

text: soil metagenome

characteristic: organism

text: CCME

text: TRUE

text: TRUE

characteristic: public

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

characteristic: site

text: Hcanyon

characteristic: site name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: 9/30/10 0:00

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

text: large river biome

text: dam

text: soil

text: soil

text: soil

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: soil metagenome

text: CCME

text: TRUE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: Hcanyon

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: TRUE

text: 9/30/10 0:00

text: soil metagenome

text: GAZ:United States of America

text: TRUE

characteristic: elevation

text: large river biome

characteristic: env biome

text: dam

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

characteristic: host subject id

characteristic: hour

characteristic: latitude

characteristic: longitude

text: soil metagenome

characteristic: organism

text: CCME

text: TRUE

text: TRUE

characteristic: public

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

characteristic: site

text: Hcanyon

characteristic: site name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: 9/29/10 0:00

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

text: large river biome

text: dam

text: soil

text: soil

text: soil

text: TRUE

text: soil metagenome

text: CCME

text: TRUE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: Halls

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: TRUE

text: 9/29/10 0:00

text: soil metagenome

text: GAZ:United States of America

text: TRUE

characteristic: elevation

text: large river biome

characteristic: env biome

text: dam

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

characteristic: host subject id

characteristic: hour

characteristic: latitude

characteristic: longitude

text: soil metagenome

characteristic: organism

text: CCME

text: TRUE

text: TRUE

characteristic: public

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

characteristic: site

text: Halls

characteristic: site name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: 9/29/10 0:00

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

text: large river biome

text: dam

text: soil

text: soil

text: soil

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: soil metagenome

text: CCME

text: TRUE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: Halls

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: TRUE

text: 9/29/10 0:00

text: soil metagenome

text: GAZ:United States of America

text: TRUE

characteristic: elevation

text: large river biome

characteristic: env biome

text: dam

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

characteristic: host subject id

characteristic: hour

characteristic: latitude

characteristic: longitude

text: soil metagenome

characteristic: organism

text: CCME

text: TRUE

text: TRUE

characteristic: public

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

characteristic: site

text: Stilton

characteristic: site name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: 9/29/10 0:00

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

text: large river biome

text: dam

text: soil

text: soil

text: soil

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: soil metagenome

text: CCME

text: TRUE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: Stilton

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: TRUE

text: 9/29/10 0:00

text: soil metagenome

text: GAZ:United States of America

text: TRUE

characteristic: elevation

text: large river biome

characteristic: env biome

text: dam

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

characteristic: extracted DNA avail now

characteristic: host subject id

characteristic: hour

characteristic: latitude

characteristic: longitude

text: soil metagenome

characteristic: organism

text: CCME

text: TRUE

text: TRUE

characteristic: public

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

characteristic: site

text: Stilton

characteristic: site name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: 9/29/10 0:00

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

text: large river biome

text: dam

text: soil

text: soil

text: soil

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: soil metagenome

text: CCME

text: TRUE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: Stilton

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: TRUE

text: 9/29/10 0:00

text: soil metagenome

text: GAZ:United States of America

text: TRUE

characteristic: elevation

text: large river biome

characteristic: env biome

text: dam

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

characteristic: host subject id

characteristic: hour

characteristic: latitude

characteristic: longitude

text: soil metagenome

characteristic: organism

text: CCME

text: TRUE

text: TRUE

characteristic: public

characteristic: replicate

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

characteristic: site

text: Stilton

characteristic: site name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: The pure TAMRA- subpopulation of Krebs-2 tumor cells obtained by FACS sorting.

characteristic: description

text: Mus musculus

text: Mus musculus

text: Tamra-negative cells

characteristic: title


text: Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences

text: public

text: house mouse

text: The population of Krebs-2 tumor cells enriched with Tamra+ cells by FACS sorting.

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Tamra-positive cells


text: public

tag: Namespace:UNIVERSITY OF VETERINARY MEDICINE VIENNA

text: pig

text: Austria

characteristic: geographic location (country and/or sea)

text: Sus scrofa

text: Sus scrofa

text: fecaes, ileum and ileocaecal lymph nodes


text: UNIVERSITY OF VETERINARY MEDICINE VIENNA

text: public

text: pig

text: Austria

text: Sus scrofa

text: Sus scrofa


text: CHENGDU INSTITUTE OF BIOLOGY, CAS

text: public

tag: Namespace:CHENGDU INSTITUTE OF BIOLOGY, CAS

characteristic: collection date

characteristic: depth

text: Mountain meadow

characteristic: environment (biome)

text: Mountain meadow

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: pH experiment

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: pH