characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: description

text: CAST young 1

characteristic: individual

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

characteristic: single cell id

text: multiple cells

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: naive thymus-derived CD4-positive, alpha-beta T cell

characteristic: cell type

text: southeastern Asian house mouse

characteristic: common name

text: Protocols: Cells were purified from spleen in two different sub-species of mice (C57BL/6 and CAST/EiJ; all male animals) using EASY cell strainer (30 μm, Greiner BioOne), cell separation media (lympholyte, #CL5035) and the CD4+ CD62L+ T Cell Isolation Kit II (Miltenyi Biotec, #130-093-227). We use a microfluidics-based approach (5-10 μm Auto Prep Integrated Fluidic Circuit - IFC, Fluidigm, San Francisco, CA) to capture single cells and the C1 Single cell Auto Prep System (Fluidigm) to prepare single-cell RNA-Seq libraries CD4+ T cells. Purified cells were directly loaded into the microfluidics (naive CD4+ T cells) or were stimulated on 96 round-plates coated with anti-CD3ε and anti-CD28 for 3 hours (activated CD4+ T cells). cDNAs were made on-chip (Fluidigm C1, 5-10um IFC) with Clontech SMARTer Ultra Low RNA kit. ERCC spike-in RNA (Ambion) (1 µL diluted at 1:50,000) was added to the C1 lysis mix. Sequencing libraries were prepared using Illumina Nextera XT kit (Illumina) using the recommendation in the Fluidigm protocol (# PN 100-7168 K1).

text: CAST young 1

text: Mus musculus castaneus

characteristic: organism

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: no cell

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus

text: CAST/EiJ

characteristic: strain

characteristic: title

type: has member


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: description

text: CAST young 1

characteristic: individual

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

characteristic: single cell id

text: not OK

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST young 1

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: OK

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


text: EMBL-EBI

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: southeastern Asian house mouse

characteristic: common name

text: CAST young 1

text: Mus musculus castaneus

characteristic: organism

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: debris

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus

text: CAST/EiJ


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: description

text: CAST young 2

characteristic: individual

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

text: no cell

text: CAST/EiJ

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST young 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: single cell id

text: not OK

characteristic: single cell well quality

text: CAST/EiJ


text: EMBL-EBI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: southeastern Asian house mouse

characteristic: common name

text: CAST young 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: OK

text: CAST/EiJ


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: description

text: CAST young 2

characteristic: individual

text: Mus musculus castaneus

characteristic: organism

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

text: debris

text: CAST/EiJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST young 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: multiple cells

text: CAST/EiJ

characteristic: strain

characteristic: title


text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST young 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: single cell id

text: OK

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus

text: CAST/EiJ


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: southeastern Asian house mouse

characteristic: common name

characteristic: description

text: CAST young 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: not OK

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST young 2

characteristic: individual

text: Mus musculus castaneus

characteristic: organism

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

text: debris

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST young 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: single cell id

text: no cell

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: southeastern Asian house mouse

text: CAST young 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: multiple cells

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus

text: CAST/EiJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: common name

characteristic: description

text: CAST young 2

characteristic: individual

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: multiple cells; debris

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: western European house mouse

text: B6 young 1

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

characteristic: single cell id

text: multiple cells


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: western European house mouse

text: B6 young 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: OK

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: western European house mouse

characteristic: common name

text: B6 young 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: debris

characteristic: single cell well quality


text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: western European house mouse

characteristic: description

text: B6 young 1

characteristic: individual

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: not OK


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: age

text: ArrayExpress

text: western European house mouse

text: B6 young 1

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

characteristic: single cell id

text: no cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: western European house mouse

text: B6 young 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: multiple cells; debris

characteristic: strain

characteristic: title


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: western European house mouse

characteristic: common name

text: B6 young 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: OK

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: western European house mouse

characteristic: description

text: B6 young 1

characteristic: individual

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: multiple cells

text: anti-CD3e and anti-CD28 for 3 hours


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: western European house mouse

text: B6 young 1

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

characteristic: single cell id

text: not OK

text: anti-CD3e and anti-CD28 for 3 hours


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: western European house mouse

characteristic: common name

text: B6 young 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: no cell

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: western European house mouse

text: B6 young 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: debris

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: western European house mouse

characteristic: description

text: B6 young 2

characteristic: individual

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: multiple cells


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: western European house mouse

characteristic: common name

text: B6 young 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

characteristic: single cell id

text: no cell


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: western European house mouse

text: B6 young 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: OK

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: western European house mouse

characteristic: description

text: B6 young 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: not OK

characteristic: single cell well quality


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: western European house mouse

text: B6 young 2

characteristic: individual

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: debris


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: SRA accession

text: ArrayExpress

text: western European house mouse

characteristic: common name

text: B6 young 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

characteristic: single cell id

text: OK

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: western European house mouse

text: B6 young 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: no cell

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: strain

characteristic: title


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: cell type

text: western European house mouse

characteristic: description

text: B6 young 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: multiple cells

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: SRA accession

text: ArrayExpress

text: western European house mouse

characteristic: common name

text: B6 young 2

characteristic: individual

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

text: not OK

text: anti-CD3e and anti-CD28 for 3 hours


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: western European house mouse

text: B6 young 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: single cell id

text: debris

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: cell type

text: western European house mouse

text: B6 young 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: multiple cells; debris

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: SRA accession

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: common name

characteristic: description

text: CAST old 1

characteristic: individual

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: OK

characteristic: single cell well quality

text: CAST/EiJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: southeastern Asian house mouse

text: CAST old 1

text: Mus musculus castaneus

characteristic: organism

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

text: not OK

text: CAST/EiJ


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: cell type

text: southeastern Asian house mouse

text: CAST old 1

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: single cell id

text: multiple cells

text: CAST/EiJ


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

characteristic: SRA accession

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: common name

text: CAST old 1

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: no cell

text: CAST/EiJ

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: Submitter Id

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: description

text: CAST old 1

characteristic: individual

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: debris

characteristic: single cell well quality

text: CAST/EiJ


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: southeastern Asian house mouse

text: CAST old 1

text: Mus musculus castaneus

characteristic: organism

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

text: OK

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus

text: CAST/EiJ


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

characteristic: cell type

text: southeastern Asian house mouse

text: CAST old 1

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: single cell id

text: no cell

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: Submitter Id

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: common name

characteristic: description

text: CAST old 1

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: not OK

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ

characteristic: strain

characteristic: title


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: southeastern Asian house mouse

text: CAST old 1

characteristic: individual

text: Mus musculus castaneus

characteristic: organism

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: multiple cells

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST old 1

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

text: debris

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus

text: CAST/EiJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell type

text: southeastern Asian house mouse

characteristic: common name

characteristic: description

text: CAST old 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: single cell id

text: not OK

text: CAST/EiJ


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: southeastern Asian house mouse

text: CAST old 2

characteristic: individual

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: no cell

text: CAST/EiJ

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST old 2

text: Mus musculus castaneus

characteristic: organism

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: multiple cells

characteristic: single cell well quality

text: CAST/EiJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell type

text: southeastern Asian house mouse

characteristic: common name

text: CAST old 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

text: OK

text: CAST/EiJ


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: southeastern Asian house mouse

characteristic: description

text: CAST old 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: single cell id

text: debris

text: CAST/EiJ


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST old 2

characteristic: individual

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: OK

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus

text: CAST/EiJ

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST old 2

text: Mus musculus castaneus

characteristic: organism

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: multiple cells

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: southeastern Asian house mouse

characteristic: common name

text: CAST old 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: sex

text: not OK

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

text: ArrayExpress

text: southeastern Asian house mouse

characteristic: description

text: CAST old 2

characteristic: individual

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

characteristic: single cell id

text: no cell

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus

text: CAST/EiJ


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: southeastern Asian house mouse

text: CAST old 2

text: Mus musculus castaneus

text: Mus musculus castaneus

text: Mus musculus castaneus

text: male

text: debris

text: anti-CD3e and anti-CD28 for 3 hours

text: CAST/EiJ

characteristic: strain

characteristic: title


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: western European house mouse

text: B6 old 1

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: OK

characteristic: single cell well quality


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

text: ArrayExpress

text: western European house mouse

characteristic: common name

characteristic: description

text: B6 old 1

characteristic: individual

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

text: not OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: western European house mouse

text: B6 old 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: single cell id

text: multiple cells


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: western European house mouse

text: B6 old 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: no cell

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: cell type

text: western European house mouse

text: B6 old 1

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: debris

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: ArrayExpress

text: western European house mouse

characteristic: common name

characteristic: description

text: B6 old 1

characteristic: individual

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

text: multiple cells

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: western European house mouse

text: B6 old 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: single cell id

text: OK

text: anti-CD3e and anti-CD28 for 3 hours


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: western European house mouse

text: B6 old 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: no cell

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: ArrayExpress

text: western European house mouse

characteristic: common name

characteristic: description

text: B6 old 1

characteristic: individual

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: not OK

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: western European house mouse

text: B6 old 1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

text: debris

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: western European house mouse

text: B6 old 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: single cell id

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: ArrayExpress

text: western European house mouse

characteristic: common name

characteristic: description

text: B6 old 2

characteristic: individual

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: debris

characteristic: strain

characteristic: title


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: western European house mouse

text: B6 old 2

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: no cell

characteristic: single cell well quality


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: western European house mouse

text: B6 old 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

text: not OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: ArrayExpress

characteristic: cell type

text: western European house mouse

characteristic: common name

characteristic: description

text: B6 old 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: single cell id

text: multiple cells


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: western European house mouse

text: B6 old 2

characteristic: individual

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: OK

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: western European house mouse

text: B6 old 2

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: not OK

characteristic: single cell well quality

text: anti-CD3e and anti-CD28 for 3 hours


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: western European house mouse

characteristic: common name

text: B6 old 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: sex

text: debris

text: anti-CD3e and anti-CD28 for 3 hours


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: western European house mouse

characteristic: description

text: B6 old 2

characteristic: individual

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

characteristic: single cell id

text: no cell

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: stimulus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: western European house mouse

text: B6 old 2

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: male

text: multiple cells

text: anti-CD3e and anti-CD28 for 3 hours

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Cancer Research UK Cambridge Institute University of Cambridge

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The Tc1 mouse line was obtained from Dr. E. Fisher and Dr. V. Tybulewizc and housed in the Biological Resources Unit (BRU) in the Cancer Research UK - Cambridge Institute under the Home Office Licence (PPL 70/7535). For maintenance of the transgenic line, the human chromosome 21 (HsChr21) was transmitted through the female germline by breeding female Tc1 mice to male (129S8 x C57BL/6J) F1 mice (conventional breeding setup). For male germline transmission, female (129S8 x C57BL/6J) F1 mice were crossed with male Tc1 mice. Liver samples were prepared by direct perfusion of the liver with buffered salt solution and fresh-frozen in liquid nitrogen. Total RNA was extracted from 25mg of liver tissue that was homogenised in Precellys tubes CK28-R (Bertin Technology) on the TissueLyser for 2x10 seconds with 10 seconds break using QIAzol Lysis Reagent (Qiagen). Pure RNA was obtained following the manufacturer’s instructions (Qiagen) and subsequently treated with DNase using the Turbo DNA-free Kit (Thermo Fisher Scientific, AM1907). 5 ug of DNase-treated total RNA were depleted of ribosomal RNA using the Ribo-Zero Kit (Epicentre RZC110424) following manufacturer’s instructions. First strand cDNA synthesis was performed using the First strand mix (Life Technologies) and Super Script II (Life Technologies) at the following programme: 10 minutes at 25C, 50 minutes at 42C and 15 minutes at 70C. cDNA was cleaned up using the Qiagen PCR purification kit according to manufacturer’s instructions. Second strand synthesis was performed by incubating the sample with First strand buffer (Life Technologies), 2mM DTT, Second strand buffer (Life Technologies), 0.2 mM mixture of dATP, dGTP, dCTP and dUTP, 1U of Escherichia coli ligase (NEB), 3U of Escherichia coli DNA polymerase I (NEB) and 1U of RNaseH (Invitrogen) for 1-2 hours at 16C. cDNA was purified again with Qiagen PCR purification kit. Libraries were prepared following the Illumina TruSeq RNA sample prep Low Throughput kit instructions with the exception that samples were treated with 1ul Uracil N-glycosylase (UNG) (Applied Biosystems) for 15 minutes at 37C before PCR amplification.

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

characteristic: organism part

text: Female germline

characteristic: phenotype

text: Mus musculus

text: male

text: fresh specimen

characteristic: specimen with known storage state


text: Cancer Research UK Cambridge Institute University of Cambridge

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

characteristic: individual

text: Mus musculus

text: Mus musculus

text: liver

text: Female germline

text: Mus musculus

text: male

characteristic: sex

text: fresh specimen


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Male germline

text: Mus musculus

text: male

text: fresh specimen

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF OXFORD

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: ancestor

text: Pseudomonas fluorescens Pf0-1

characteristic: organism

text: Pseudomonas fluorescens Pf0-1

characteristic: title


text: UNIVERSITY OF OXFORD

characteristic: INSDC center name

text: public

text: N=200 bottleneck

text: Pseudomonas fluorescens Pf0-1

text: Pseudomonas fluorescens Pf0-1


text: UNIVERSITY OF OXFORD

characteristic: INSDC first public

text: public

text: N=600 bottleneck

text: Pseudomonas fluorescens Pf0-1

text: Pseudomonas fluorescens Pf0-1


text: UNIVERSITY OF OXFORD

text: public

characteristic: INSDC status

text: N=2000 bottleneck

text: Pseudomonas fluorescens Pf0-1

text: Pseudomonas fluorescens Pf0-1


text: Anopheles Funestus

characteristic: ArrayExpress-Species

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles funestus

text: Anopheles funestus


text: Vibrio cholerae

text: Vibrio cholerae O1 Inaba

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae O1 Inaba


text: Vibrio cholerae

text: Vibrio cholerae O1 OGAWA

text: SC

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae O1 OGAWA


text: public

tag: Namespace:Service de Biologie Integrative et Genetique Moleculaire (SBIGeM)/I2BC/UMR9198-CEA/CNRS/Universite Paris-Saclay

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: lung fibroblast

characteristic: cell type

text: human

text: Protocols: MEM+10%FBS+glutamine+pyruvate+non-essential amino acids in 5%02 + 5%C02 etoposide 20 µM Ribo-Zero Magnetic Gold Kip (Epicentre) Illumina TruSeq adapters

characteristic: description

text: hTERT

characteristic: genetic modification

text: sh-NoTarget

characteristic: genotype

text: senescence induced by etoposide

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Service de Biologie Integrative et Genetique Moleculaire (SBIGeM)/I2BC/UMR9198-CEA/CNRS/Universite Paris-Saclay

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: lung fibroblast

text: human

text: hTERT

text: sh-NoTarget

text: senescence induced by etoposide

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: lung fibroblast

text: human

characteristic: common name

text: hTERT

text: senescence induced by etoposide

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: title


text: CREA-ORT

text: public

characteristic: collection date

unit: m

characteristic: depth

text: Agricultural soil

characteristic: environment (biome)

text: Compost

characteristic: environment (feature)

text: Compost

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: CarbOnFarm

characteristic: project name

text: compost metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Pithovirus sp. LC8

text: Pithovirus sp. LC8

characteristic: strain

text: Pithovirus massiliensis genome


text: public

tag: Namespace:MRC-University of Glasgow Centre for Virus Research

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: TBEVIFN

characteristic: title


text: MRC-University of Glasgow Centre for Virus Research

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: TBEVIFN


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: TBEV


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: MockIFN


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Mock


text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The Tc1 mouse line was obtained from Dr. E. Fisher and Dr. V. Tybulewizc and housed in the Biological Resources Unit (BRU) in the Cancer Research UK - Cambridge Institute under the Home Office Licence (PPL 70/7535). For male germline transmission, female (129S8 x C57BL/6J) F1 mice were crossed with male Tc1 mice. Liver samples were prepared by direct perfusion of the liver with buffered salt solution and fresh-frozen in liquid nitrogen. Samples were subjected to manual homogenisation followed by DNA purification by phenol chloroform extraction or using the QIAGEN 100/G genomic tip kit. For each individual Bio-CAP experiment, 25 μl of NeutrAvidin Agarose Resin (Thermo Scientific, 29200) was washed with BC100 buffer and then incubated with 50 μl of 0.5 μg/μl biotinylated hKDM2b-CxxC protein diluted in BC100 buffer for 1 hour at 4°C. The conjugated resin/CxxC protein was then washed with CAP100 buffer (12.5% glycerol, 0.1% Triton-x-100, 20 mM HEPES pH 7.9, 100 mM NaCl). Genomic DNA was sonicated to an average size of 150-250 bp using a Diagenode Bioruptor. Sonicated DNA was then diluted in CAP100 buffer to a concentration of 16 μg/ml and a 100 μl Input sample was retained. For each Bio-CAP experiment, 500 μl of diluted sonicated DNA, corresponding to approximately 8 μg of DNA, was added to the conjugated CxxC resin. The DNA and resin were incubated at 4°C for 1 hour with gentle mixing. The resin was then collected by centrifugation at 1500 x g for 3 minutes at 4°C, and the unbound flowthrough (FT) material was removed. The resin and any associated DNA was washed twice with 1 ml of CAP100 buffer, before the first elution was performed by adding 50 μl of CAP300 (12.5% glycerol, 0.1% Triton-x-100, 20 mM HEPES pH 7.9, 300 mM NaCl) to the resin and incubating at room temperature for 10 minutes. Following centrifugation a 50 μl elution fraction was carefully collected. The elution process was repeated using another 50 μl of CAP300 and the 300 mM elution fractions were pooled (giving a total volume of 100 μl). Subsequent elutions were performed in the same way using buffers with 500 mM, 700 mM and 1 M NaCl sequentially. Each 100 μl elution fraction, together with 100 μl of both the Input and FT samples, was purified using a PCR purification column (Qiagen) and DNA was eluted in a volume of 50 μl. The 700 mM and 1 M fractions were pooled for sequencing. Bio-CAP material was quantified using the High Sensitivity Qubit system (Invitrogen) and the fragmentation profile was assessed using a DNA HS Agilent 2200 TapeStation chip or a DNA HS Agilent 2100 Bioanalyzer chip. Bio-CAP material was then prepared for Solexa sequencing using the NEBNextTM DNA Sample Prep Master Mix Set 1, according to manufacturer's specifications.

characteristic: description

text: Input

characteristic: fraction

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: testis

characteristic: organism part

text: Male Germline

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: non-methylated DNA

text: Mus musculus

text: Mus musculus

text: testis

text: Male Germline

text: Mus musculus

text: male

text: fresh specimen


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: non-methylated DNA

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Male Germline

text: Mus musculus

text: male

text: fresh specimen

characteristic: strain

characteristic: title


text: THE UNIVERSITY OF NEW SOUTH WALES

text: public

tag: Namespace:THE UNIVERSITY OF NEW SOUTH WALES

text: Andrew S. Kinsela

characteristic: collected by

characteristic: collection date

characteristic: description

text: Groundwater

characteristic: environment (biome)

text: Australia

characteristic: geographic location (country and/or sea)

text: New South Wales - Lucas Heights

characteristic: geographic location (region and locality)

text: metagenome

text: metagenome

text: Illumina - NextSeq500

characteristic: sequencing method

text: Little Forest Legacy Site


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

text: public

text: Andrew S. Kinsela

text: KWR15-045-LF-C Bad sample. Left at RT overnight.

text: Groundwater

text: Australia

text: New South Wales - Lucas Heights

text: metagenome

text: metagenome

text: Illumina - NextSeq500

text: Little Forest Legacy Site


text: UQ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Brisbane, Australia

characteristic: isolate

text: Sputum

characteristic: isolation source

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: sub strain

text: Pseudomonas aeruginosa AUST-02 sub-type M3L7 within-host study 1


text: ETH ZURICH D-BSSE

text: public

tag: Namespace:ETH ZURICH D-BSSE

text: human

characteristic: common name

text: Whole exome sequencing of clear cell renal cell carcinoma tumor and matched normal

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ccRCC_tumor_and_matched_normal_sample_WXS

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA ONIRIS

text: public

tag: Namespace:INRA ONIRIS

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium CNCM I-4031


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

text: Jasmine Berg

characteristic: collected by

text: Switzerland

characteristic: geographic location (country and/or sea)

text: Lake Cadagno

characteristic: geographic location (region and locality)

text: Water

characteristic: note

text: unidentified bacterium

text: unidentified bacterium

text: Chemocline samples from Lake Cadagno waters


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Jasmine Berg

text: Switzerland

text: Lake Cadagno

text: Water

text: unidentified bacterium

text: unidentified bacterium


text: GSC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UNIBE-IG

text: public

text: horse

characteristic: common name

text: Akhal-Teke - male

characteristic: description

text: Equus caballus

text: Equus caballus

text: Akhal-Teke


text: UNIBE-IG

text: public

text: horse

text: Akhal-Teke - female

text: Equus caballus

characteristic: organism

text: Equus caballus

text: Akhal-Teke

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIBE-IG

text: public

text: horse

text: Arabian - female

text: Equus caballus

text: Equus caballus

text: Arabian


text: UNIBE-IG

text: public

text: horse

text: Franches-Montagnes - female

text: Equus caballus

text: Equus caballus

text: Franches-Montagnes


text: UNIBE-IG

text: public

text: horse

text: Franches-Montagnes- male

text: Equus caballus

text: Equus caballus

text: Franches-Montagnes


text: UNIBE-IG

text: public

text: horse

text: Franches-Montagnes - male

text: Equus caballus

text: Equus caballus

text: Franches-Montagnes


text: UNIBE-IG

text: public

text: horse

text: Haflinger- female

text: Equus caballus

text: Equus caballus

text: Haflinger


text: UNIBE-IG

text: public

text: horse

text: Koninklijk Warmbloed Paard Nederland

text: Equus caballus

text: Equus caballus

text: Koninklijk Warmbloed Paard Nederland


text: UNIBE-IG

text: public

text: horse

text: Quarter Horse - female

text: Equus caballus

text: Equus caballus

text: Quarter Horse


text: UNIBE-IG

text: public

text: horse

text: Quarter Horse - male

text: Equus caballus

text: Equus caballus

text: Quarter Horse


text: UNIBE-IG

text: public

text: horse

text: Swiss Warmblood - female

text: Equus caballus

text: Equus caballus

text: Swiss Warmblood


text: URMITE

text: public

text: Bacteria abnormis

text: Bacteria abnormis


text: URMITE

text: public

text: Bacteria aborigena

text: Bacteria aborigena


text: URMITE

text: public

text: Bacteria acuminatocercata

text: Bacteria acuminatocercata


text: URMITE

text: public

text: Bacteria aetolus

text: Bacteria aetolus


text: URMITE

text: public

text: Bacteria amazonica

text: Bacteria amazonica


text: URMITE

text: public

text: Bacteria annulicornis

text: Bacteria annulicornis


text: Mouse

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mammary Epithelial

characteristic: ArrayExpress-CellType

text: Tumour

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Immunoprecipitate

text: TNBC cancer

text: female

characteristic: ArrayExpress-Sex

text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: BCL11A chipseq

characteristic: sample description

text: Homo sapiens


text: Mammary Epithelial

text: Tumour

text: TNBC cancer

text: female

text: Homo sapiens

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

text: CHD8 chipseq

text: Homo sapiens


text: Mammary Epithelial

text: Tumour

text: TNBC cancer

text: female

text: Homo sapiens

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: ARID1A chipseq

text: Homo sapiens


text: Mammary Epithelial

text: Tumour

text: TNBC cancer

text: female

text: Homo sapiens

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

text: Homo sapiens

characteristic: organism

text: H3K27_3ME chipseq

text: Homo sapiens

characteristic: title


text: Mammary Epithelial

characteristic: ArrayExpress-CellType

text: Tumour

characteristic: ArrayExpress-DevelopmentalStage

text: TNBC cancer

characteristic: ArrayExpress-Phenotype

text: female

text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

text: Homo sapiens

text: H3K27_AC chipseq

text: Homo sapiens

text: MCAC


text: Mammary Epithelial

text: Tumour

text: TNBC cancer

text: female

characteristic: ArrayExpress-Sex

text: Homo sapiens

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

text: Homo sapiens

text: Input DNA

characteristic: sample description

text: Homo sapiens

text: MCinput


text: Mammary Epithelial

text: Tumour

characteristic: ArrayExpress-Immunoprecipitate

text: TNBC cancer (with BCL11A KD)

text: female

text: Homo sapiens

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: BCL11A chipseq

text: Homo sapiens


text: Mammary Epithelial

text: Tumour

text: TNBC cancer (with BCL11A KD)

text: female

text: Homo sapiens

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: CHD8 chipseq

text: Homo sapiens


text: Mammary Epithelial

text: Tumour

text: TNBC cancer (with BCL11A KD)

text: female

text: Homo sapiens

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: ARID1A chipseq

text: Homo sapiens


text: Mammary Epithelial

characteristic: ArrayExpress-CellType

text: Tumour

characteristic: ArrayExpress-DevelopmentalStage

text: TNBC cancer (with BCL11A KD)

characteristic: ArrayExpress-Phenotype

text: female

text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: H3K27_3ME chipseq

text: Homo sapiens

characteristic: title


text: Mammary Epithelial

text: Tumour

text: TNBC cancer (with BCL11A KD)

text: female

characteristic: ArrayExpress-Sex

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

text: Homo sapiens

text: H3K27_AC chipseq

characteristic: sample description

text: Homo sapiens

text: MSAC


text: Mammary Epithelial

text: Tumour

text: TNBC cancer (with BCL11A KD)

text: female

text: Homo sapiens

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: Input DNA

text: Homo sapiens

text: MSinput


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

characteristic: depth

text: Fecal sample taken from individual NA.01

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.02

characteristic: description

text: False

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: False

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.04

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

text: Missing: Not provided

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: Missing: Not provided

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: male

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.06

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

text: Missing: Not provided

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: Missing: Not provided

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: Missing: Not provided

text: Missing: Not provided

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.07

characteristic: description

text: False

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: False

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.10

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.12

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: Missing: Not provided

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.13

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.14

characteristic: description

text: False

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: False

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.15

characteristic: description

text: False

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: False

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.16

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.17

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.18

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.20

characteristic: description

text: True

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: True

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.21

characteristic: description

text: False

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: False

characteristic: body mass index

text: Missing: Not provided

text: GAZ:Italy

characteristic: country

text: False

text: True

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: True

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

text: human

text: human gut metagenome

characteristic: organism

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: years

text: False

text: Missing: Not provided

text: GAZ:Italy

characteristic: depth

text: Fecal sample taken from individual NA.23

characteristic: description

text: False

text: True

characteristic: elevation

text: EMP sample

text: Host associated

text: Animal

text: Distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: True

characteristic: extracted DNA avail now

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Italy:Naples

characteristic: geo loc name

characteristic: glycaemia

characteristic: height or length

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: ANL

text: True

text: True

text: completed

text: Stool

text: sequenced (16S)

text: human gut metagenome

text: Missing: Not provided

text: female

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided