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text: The knowledge of species composition and functional aspects of the human microbiome is steadily increasing; but still limited information regarding its variation on a global scale is available. Due to the microbial involvement in inflammatory bowel diseases and their increase in global frequency; shared patterns across populations may hold important clinical relevance. In this study; we analyze a set of 89 mucosal biopsies sampled from individuals of German; Lithuanian and Indian origins; using bacterial community profiling of a roughly equal number of healthy controls; Crohn Disease and Ulcerative Colitis patients from each location. From each individual sample 16S rDNA and rRNA are analyzed as proxies for standing and active microbial community structure; respectively. We find pronounced regional as well as global disease patterns in the major phyla and patterns of diversity; which differ when investigated in the standing or active community. Geography appears to dominate patterns of beta diversity; with European samples being more similar to each other; which is more pronounced in the active microbial community. However; when geographic influence is accounted for; some universal patterns of disease become apparent. In particular; two genera belonging to the Clostridium leptum subgroup; Faecalibacteria and Papillibacter; display consistent patterns with respect to disease status and may thus serve as reliable �microbiomarkers�. These analyses reveal the importance of the interaction of geography and disease in the interpretation of disease-associated changes in microbial communities and highlight the added value of analyzing communities on both the rDNA and rRNA level.

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text: Regional patterns of the standing and active human gut microbiome in health and inflammatory bowel diseases

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text: pyrosequencing

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text: DNA

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text: 16S rRNA

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text: MPIEVB

characteristic: INSDC center name

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characteristic: SRA accession

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text: mucosa

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text: Sigmoid colon

characteristic: body site

text: ChimeraSlayer; Usearch 4.1 database

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text: human

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text: organism-associated habitat

characteristic: environment (biome)

text: organism-associated habitat

characteristic: environment (feature)

text: mucus

characteristic: environment (material)

text: microbiome

characteristic: experimental factor

text: Ulcerative Colitis

characteristic: gastrointestinal tract disorder

text: Germany

characteristic: geographic location (longitude)

text: human-gut

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text: BMRP

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text: mucosa

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text: ChimeraSlayer; Usearch 4.1 database

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text: remission

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text: organism-associated habitat

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text: microbiome

text: Crohn Disease

text: Germany

characteristic: geographic location (latitude)

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characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

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text: mucosa

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text: ChimeraSlayer; Usearch 4.1 database

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characteristic: geographic location (latitude)

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text: India

characteristic: geographic location (latitude)

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text: metagenome

characteristic: investigation type

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