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text: The knowledge of species composition and functional aspects of the human microbiome is steadily increasing; but still limited information regarding its variation on a global scale is available. Due to the microbial involvement in inflammatory bowel diseases and their increase in global frequency; shared patterns across populations may hold important clinical relevance. In this study; we analyze a set of 89 mucosal biopsies sampled from individuals of German; Lithuanian and Indian origins; using bacterial community profiling of a roughly equal number of healthy controls; Crohn Disease and Ulcerative Colitis patients from each location. From each individual sample 16S rDNA and rRNA are analyzed as proxies for standing and active microbial community structure; respectively. We find pronounced regional as well as global disease patterns in the major phyla and patterns of diversity; which differ when investigated in the standing or active community. Geography appears to dominate patterns of beta diversity; with European samples being more similar to each other; which is more pronounced in the active microbial community. However; when geographic influence is accounted for; some universal patterns of disease become apparent. In particular; two genera belonging to the Clostridium leptum subgroup; Faecalibacteria and Papillibacter; display consistent patterns with respect to disease status and may thus serve as reliable �microbiomarkers�. These analyses reveal the importance of the interaction of geography and disease in the interpretation of disease-associated changes in microbial communities and highlight the added value of analyzing communities on both the rDNA and rRNA level.

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text: Regional patterns of the standing and active human gut microbiome in health and inflammatory bowel diseases

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text: 16S rRNA

characteristic: target gene

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characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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characteristic: body mass index

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text: ChimeraSlayer; Usearch 4.1 database

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text: human

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characteristic: environment (biome)

text: organism-associated habitat

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text: mucus

characteristic: environment (material)

text: microbiome

characteristic: experimental factor

text: Crohn Disease

characteristic: gastrointestinal tract disorder

text: Lithuania

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

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text: Homo sapiens

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characteristic: INSDC center name

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text: organism-associated habitat

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characteristic: geographic location (latitude)

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characteristic: geographic location (latitude)

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characteristic: INSDC center name

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text: organism-associated habitat

characteristic: environment (biome)

text: organism-associated habitat

characteristic: environment (feature)

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characteristic: environment (material)

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characteristic: experimental factor

text: Healthy

characteristic: gastrointestinal tract disorder

text: Lithuania

characteristic: geographic location (longitude)

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text: organism-associated habitat

text: organism-associated habitat

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text: Lithuania

characteristic: geographic location (latitude)

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characteristic: body mass index

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characteristic: geographic location (longitude)

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characteristic: gastrointestinal tract disorder

text: Lithuania

characteristic: geographic location (longitude)

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text: software

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characteristic: geographic location (latitude)

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text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: TCTACGTAGC

characteristic: multiplex identifiers

text: Homo sapiens

characteristic: pcr primers

text: pathological

characteristic: phenotype

text: BMRP

characteristic: project name

text: biopsy

characteristic: sample collection device or method

text: Homo sapiens

text: software

characteristic: sequence quality check

text: pyrosequencing

characteristic: sequencing method

text: cDNA

characteristic: sequencing template

text: female

characteristic: sex

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: mucosa

characteristic: body product

text: Sigmoid colon

characteristic: body site

text: ChimeraSlayer; Usearch 4.1 database

characteristic: chimera check

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: remission

characteristic: disease status

text: organism-associated habitat

characteristic: environment (biome)

text: organism-associated habitat

characteristic: environment (feature)

text: mucus

characteristic: environment (material)

text: microbiome

characteristic: experimental factor

text: Crohn Disease

characteristic: gastrointestinal tract disorder

text: Lithuania

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

text: no medication

characteristic: medication

text: TGTACTACTC

text: Homo sapiens

characteristic: organism

text: pathological

text: BMRP

text: biopsy

text: Homo sapiens

text: software

text: pyrosequencing

text: cDNA

text: male

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH-FS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: m

characteristic: depth

text: boreal forest

text: forest

text: soil

text: Finland

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: fungal diversity in peatland

characteristic: project name

text: soil metagenome

text: 454 Titanium

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: boreal forest soil

type: has member


characteristic: ENA-CHECKLIST

text: DTU-GE

text: public

text: National Food Institute (DTU Food)

characteristic: collected by

characteristic: collection date

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: No

characteristic: note

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: National Food Institute (DTU Food)

text: Denmark

text: healthy

text: Sus scrofa domesticus

text: Yes

text: No

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

text: ROSLIN

text: public

text: sheep

characteristic: common name

text: Texel male sheep Animal#20118011

characteristic: description

text: Ovis aries

text: Ovis aries

text: Texel male sheep

characteristic: title


text: songb@vims.edu

text: public

characteristic: collection date

characteristic: depth

text: estuary

characteristic: environment (biome)

text: estuary

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: USA

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured bacterium

text: DNRA in New River Estuary

characteristic: project name

text: uncultured bacterium

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: nrfA genes in New River Estuary


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBBTEC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: urine

characteristic: isolation source

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

text: IBBTEC

text: public

characteristic: collection date

text: Spain

text: diseased

text: Homo sapiens

text: abscess

text: Escherichia coli

text: Escherichia coli

characteristic: title


characteristic: AnalysisSampleID

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

text: public

tag: Namespace:UNIVERSITY OF WATERLOO

characteristic: age

text: mouth

characteristic: body site

text: 16S rRNA gene sequences (V3 region) of human oral samples from subgingival, supragingival, and tongue plaque.

characteristic: description

text: omnivore

characteristic: diet

text: healthy

characteristic: disease status

text: human

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: plaque

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea

text: Canada

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-oral

characteristic: humam oral environmental package

text: mimarks-survey

characteristic: investigation type

text: human oral metagenome

text: Community structure analysis in chronic periodontitis and novel oral sampling sites for detecting disease indicators

characteristic: project name

text: Tongue

characteristic: sample region

text: human oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: female

characteristic: sex

text: Human oral sample, 16S rRNA V3

characteristic: total mass


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: mouth

characteristic: body site

characteristic: collection date

characteristic: description

text: omnivore

text: healthy

text: human

text: mouth

text: plaque

text: Canada

text: Canada

characteristic: geographic location (country and/or sea)

text: Canada

text: human-oral

text: mimarks-survey

text: human oral metagenome

characteristic: organism

text: Supra

text: human oral metagenome

text: Illumina MiSeq

text: female

text: Human oral sample, 16S rRNA V3

characteristic: title


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WATERLOO

text: public

text: mouth

text: omnivore

characteristic: diet

text: healthy

characteristic: disease status

text: human

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: plaque

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea

text: Canada

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-oral

characteristic: humam oral environmental package

text: mimarks-survey

characteristic: investigation type

text: human oral metagenome

characteristic: project name

text: Subg

characteristic: sample region

text: human oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: female

characteristic: sex

text: Human oral sample, 16S rRNA V3

characteristic: total mass


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: mouth

characteristic: body site

characteristic: collection date

characteristic: description

text: omnivore

text: healthy

text: human

text: mouth

text: plaque

text: Canada

text: Canada

characteristic: geographic location (country and/or sea)

text: Canada

text: human-oral

text: mimarks-survey

text: human oral metagenome

characteristic: organism

text: Tongue

text: human oral metagenome

text: Illumina MiSeq

text: male

text: Human oral sample, 16S rRNA V3

characteristic: title


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WATERLOO

text: public

text: mouth

text: omnivore

characteristic: diet

text: healthy

characteristic: disease status

text: human

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: plaque

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea

text: Canada

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-oral

characteristic: humam oral environmental package

text: mimarks-survey

characteristic: investigation type

text: human oral metagenome

characteristic: project name

text: Supra

characteristic: sample region

text: human oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: male

characteristic: sex

text: Human oral sample, 16S rRNA V3

characteristic: total mass


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: mouth

characteristic: body site

characteristic: collection date

characteristic: description

text: omnivore

text: healthy

text: human

text: mouth

text: plaque

text: Canada

text: Canada

characteristic: geographic location (country and/or sea)

text: Canada

text: human-oral

text: mimarks-survey

text: human oral metagenome

characteristic: organism

text: Subg

text: human oral metagenome

text: Illumina MiSeq

text: male

text: Human oral sample, 16S rRNA V3

characteristic: title


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WATERLOO

text: public

text: mouth

text: omnivore

characteristic: diet

text: periodontitis

characteristic: disease status

text: human

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: plaque

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea

text: Canada

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-oral

characteristic: humam oral environmental package

text: mimarks-survey

characteristic: investigation type

text: human oral metagenome

characteristic: project name

text: Tongue

characteristic: sample region

text: human oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: female

characteristic: sex

text: Human oral sample, 16S rRNA V3

characteristic: total mass


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: mouth

characteristic: body site

characteristic: collection date

characteristic: description

text: omnivore

text: periodontitis

text: human

text: mouth

text: plaque

text: Canada

text: Canada

characteristic: geographic location (country and/or sea)

text: Canada

text: human-oral

text: mimarks-survey

text: human oral metagenome

characteristic: organism

text: Supra

text: human oral metagenome

text: Illumina MiSeq

text: female

text: Human oral sample, 16S rRNA V3

characteristic: title


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WATERLOO

text: public

text: mouth

text: omnivore

characteristic: diet

text: periodontitis

characteristic: disease status

text: human

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: plaque

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea

text: Canada

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-oral

characteristic: humam oral environmental package

text: mimarks-survey

characteristic: investigation type

text: human oral metagenome

characteristic: project name

text: Subg

characteristic: sample region

text: human oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: female

characteristic: sex

text: Human oral sample, 16S rRNA V3

characteristic: total mass


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: mouth

characteristic: body site

characteristic: collection date

characteristic: description

text: omnivore

text: periodontitis

text: human

text: mouth

text: plaque

text: Canada

text: Canada

characteristic: geographic location (country and/or sea)

text: Canada

text: human-oral

text: mimarks-survey

text: human oral metagenome

characteristic: organism

text: Tongue

text: human oral metagenome

text: Illumina MiSeq

text: male

text: Human oral sample, 16S rRNA V3

characteristic: title


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WATERLOO

text: public

text: mouth

text: omnivore

characteristic: diet

text: periodontitis

characteristic: disease status

text: human

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: plaque

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea

text: Canada

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-oral

characteristic: humam oral environmental package

text: mimarks-survey

characteristic: investigation type

text: human oral metagenome

characteristic: project name

text: Supra

characteristic: sample region

text: human oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: male

characteristic: sex

text: Human oral sample, 16S rRNA V3

characteristic: total mass


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: mouth

characteristic: body site

characteristic: collection date

characteristic: description

text: omnivore

text: periodontitis

text: human

text: mouth

text: plaque

text: Canada

text: Canada

characteristic: geographic location (country and/or sea)

text: Canada

text: human-oral

text: mimarks-survey

text: human oral metagenome

characteristic: organism

text: Subg

text: human oral metagenome

text: Illumina MiSeq

text: male

text: Human oral sample, 16S rRNA V3

characteristic: title


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WATERLOO

text: public

text: mouth

text: vegetarian

characteristic: diet

text: periodontitis

characteristic: disease status

text: human

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: plaque

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea

text: Canada

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-oral

characteristic: humam oral environmental package

text: mimarks-survey

characteristic: investigation type

text: human oral metagenome

characteristic: project name

text: Tongue

characteristic: sample region

text: human oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: female

characteristic: sex

text: Human oral sample, 16S rRNA V3

characteristic: total mass


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: mouth

characteristic: body site

characteristic: collection date

characteristic: description

text: vegetarian

text: periodontitis

text: human

text: mouth

text: plaque

text: Canada

text: Canada

characteristic: geographic location (country and/or sea)

text: Canada

text: human-oral

text: mimarks-survey

text: human oral metagenome

characteristic: organism

text: Supra

text: human oral metagenome

text: Illumina MiSeq

text: female

text: Human oral sample, 16S rRNA V3

characteristic: title


characteristic: AnalysisSampleID

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WATERLOO

text: public

text: mouth

text: vegetarian

characteristic: diet

text: periodontitis

characteristic: disease status

text: human

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: plaque

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea

text: Canada

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-oral

characteristic: humam oral environmental package

text: mimarks-survey

characteristic: investigation type

text: human oral metagenome

characteristic: project name

text: Subg

characteristic: sample region

text: human oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: female

characteristic: sex

text: Human oral sample, 16S rRNA V3

characteristic: total mass


characteristic: AnalysisSampleID

text: Low

characteristic: BtiTreatment

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: µM/L

characteristic: ammonium

unit: µg/L

characteristic: chlorophyll

characteristic: collection date

text: V3 region of 16S rRNA genes from a mosquito mesocosm.

characteristic: description

unit: µmol/kg

characteristic: dissolved oxygen

text: freshwater biome

text: freshwater wetland

text: pond water

text: USA

characteristic: geographic location (country and/or sea)

text: USA

characteristic: geographic location (depth)

text: mimarks-survey

characteristic: mesocosm

unit: µmol/L

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen

text: aquatic metagenome

characteristic: organism

characteristic: pcr primers

text: Bti and aquatic microbial community interactions

characteristic: sample well

text: aquatic metagenome

text: Illumina MiSeq

characteristic: srp

characteristic: sulfate

characteristic: target gene

characteristic: target subfragment

unit: ºC

characteristic: temperature

text: 16S rRNA genes from mosquito mesocosms

characteristic: title

text: water

characteristic: water environmental package


characteristic: AnalysisSampleID

text: High

characteristic: BtiTreatment

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: ammonium

characteristic: chlorophyll

characteristic: collection date

characteristic: description

characteristic: dissolved oxygen

text: freshwater biome

characteristic: environment (biome)

text: freshwater wetland

characteristic: environment (feature)

text: pond water

characteristic: environment (material)

text: USA

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: project name

text: aquatic metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA genes from mosquito mesocosms

text: water


characteristic: AnalysisSampleID

text: Control

characteristic: BtiTreatment

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: freshwater biome

text: freshwater wetland

text: pond water

text: USA

characteristic: geographic location (country and/or sea)

text: USA

characteristic: geographic location (depth)

text: mimarks-survey

characteristic: mesocosm

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen

text: aquatic metagenome

characteristic: organism

characteristic: pcr primers

characteristic: sample well

text: aquatic metagenome

text: Illumina MiSeq

characteristic: srp

characteristic: sulfate

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

text: 16S rRNA genes from mosquito mesocosms

characteristic: title

text: water

characteristic: water environmental package


characteristic: AnalysisSampleID

text: High

characteristic: BtiTreatment

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: ammonium

characteristic: chlorophyll

characteristic: collection date

characteristic: description

characteristic: dissolved oxygen

text: freshwater biome

characteristic: environment (biome)

text: freshwater wetland

characteristic: environment (feature)

text: pond water

characteristic: environment (material)

text: USA

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: project name

text: aquatic metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA genes from mosquito mesocosms

text: water


characteristic: AnalysisSampleID

text: Low

characteristic: BtiTreatment

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: freshwater biome

text: freshwater wetland

text: pond water

text: USA

characteristic: geographic location (country and/or sea)

text: USA

characteristic: geographic location (depth)

text: mimarks-survey

characteristic: mesocosm

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen

text: aquatic metagenome

characteristic: organism

characteristic: pcr primers

characteristic: sample well

text: aquatic metagenome

text: Illumina MiSeq

characteristic: srp

characteristic: sulfate

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

text: 16S rRNA genes from mosquito mesocosms

characteristic: title

text: water

characteristic: water environmental package


characteristic: AnalysisSampleID

text: Control

characteristic: BtiTreatment

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: ammonium

characteristic: chlorophyll

characteristic: collection date

characteristic: description

characteristic: dissolved oxygen

text: freshwater biome

characteristic: environment (biome)

text: freshwater wetland

characteristic: environment (feature)

text: pond water

characteristic: environment (material)

text: USA

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: project name

text: aquatic metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA genes from mosquito mesocosms

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Statens Serum Institut, Flemming Scheutz

characteristic: collected by

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Faeces

characteristic: isolation source host associated

text: No

characteristic: note

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

text: Homo sapiens

text: Yes

text: Faeces

text: No

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Yes

text: Faeces

text: No

text: Morganella morganii

text: Morganella morganii


text: University of Vermont - USA

characteristic: INSDC last update

text: public

tag: Namespace:University of Vermont - USA

text: Sebasticook Lake, ME

characteristic: description

text: water

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: NECC Metagenomics

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: NECC metagenomics

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UDEL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: estuarine

text: tidal estuary

text: sediment

text: USA

characteristic: geographic location (elevation)

text: metagenome

text: sediment metagenome

characteristic: organism

text: White Oak Estuary Sediment Metagenome

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: White Oak Estuary Sediment Metagenome


characteristic: External Id

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: human gut metagenome

text: MetaHIT-IGC

text: human gut metagenome

text: Illumina

text: Stool sample from chinese


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NIOO-KNAW

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: description

text: anthropogenic terrestrial biome

text: river bank

text: soil

text: Netherlands

text: metagenome

characteristic: investigation type

text: soil metagenome

text: BioCoPro

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: III

text: anthropogenic terrestrial biome

characteristic: environment (biome)

text: river bank

text: soil

text: Netherlands

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

characteristic: organism

text: BioCoPro

text: soil metagenome

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NIOO-KNAW

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IV

text: anthropogenic terrestrial biome

text: river bank

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: BioCoPro

text: soil metagenome

text: soil


characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: VIII

characteristic: description

text: anthropogenic terrestrial biome

text: river bank

text: soil

text: Netherlands

text: metagenome

characteristic: investigation type

text: soil metagenome

text: BioCoPro

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: VI

text: anthropogenic terrestrial biome

characteristic: environment (biome)

text: river bank

text: soil

text: Netherlands

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

characteristic: organism

text: BioCoPro

text: soil metagenome

text: soil


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: X

text: anthropogenic terrestrial biome

text: river bank

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: BioCoPro

text: soil metagenome

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

characteristic: INSDC first public

text: public

text: VII

characteristic: description

text: anthropogenic terrestrial biome

text: river bank

text: soil

text: Netherlands

text: metagenome

characteristic: investigation type

text: soil metagenome

text: BioCoPro

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEBITEC

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: bacteria

characteristic: environment (biome)

text: seaside

text: soil

text: India

characteristic: geographic location (elevation)

text: metagenome

text: metagenome

characteristic: organism

text: Chitin

text: metagenome

text: soil

text: Metagenome sequencing of a chitin enriched culture


Luumaki

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Luumaki

tag: Namespace:UNIVERSITY OF HELSINKI

text: boreal forest

text: forest soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: soil metagenome

text: Spatial patterns of microbial diversity and activity in an aged creosote contaminated site

text: soil metagenome

text: pyrosequencing

text: soil

text: 16S rRNA amplicon sequences from cresote polluted soil


45-02 elevated CO2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Thünen Institute of Biodiversity

characteristic: INSDC first public

text: public

text: 45-02 elevated CO2

tag: Namespace:Thünen Institute of Biodiversity

text: agricultural field

text: agricultural field

text: soil

text: Germany

text: metagenome

characteristic: investigation type

text: Hordeum vulgare

text: Barley rhizosphere procaryotes

characteristic: project name

text: Hordeum vulgare

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Barley rhizosphere procaryotes

characteristic: title


51-08 ambient CO2

characteristic: ENA-CHECKLIST

text: Thünen Institute of Biodiversity

characteristic: INSDC last update

text: public

text: 51-08 ambient CO2

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: agricultural field

characteristic: environment (biome)

text: agricultural field

text: soil

text: Germany

characteristic: geographic location (elevation)

text: metagenome

text: Hordeum vulgare

characteristic: organism

text: Barley rhizosphere procaryotes

text: Hordeum vulgare

text: Illumina MiSeq

text: soil

text: Barley rhizosphere procaryotes


52-09 elevated CO2

characteristic: ENA-FIRST-PUBLIC

text: Thünen Institute of Biodiversity

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 52-09 elevated CO2

text: agricultural field

text: agricultural field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Hordeum vulgare

text: Barley rhizosphere procaryotes

text: Hordeum vulgare

text: Illumina MiSeq

text: soil

text: Barley rhizosphere procaryotes


47-04 elevated CO2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Thünen Institute of Biodiversity

characteristic: INSDC first public

text: public

text: 47-04 elevated CO2

text: agricultural field

text: agricultural field

text: soil

text: Germany

text: metagenome

characteristic: investigation type

text: Hordeum vulgare

text: Barley rhizosphere procaryotes

characteristic: project name

text: Hordeum vulgare

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Barley rhizosphere procaryotes

characteristic: title


50-07 elevated CO2

characteristic: ENA-CHECKLIST

text: Thünen Institute of Biodiversity

characteristic: INSDC last update

text: public

text: 50-07 elevated CO2

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: agricultural field

characteristic: environment (biome)

text: agricultural field

text: soil

text: Germany

characteristic: geographic location (elevation)

text: metagenome

text: Hordeum vulgare

characteristic: organism

text: Barley rhizosphere procaryotes

text: Hordeum vulgare

text: Illumina MiSeq

text: soil

text: Barley rhizosphere procaryotes


48-05 elevated CO2

characteristic: ENA-FIRST-PUBLIC

text: Thünen Institute of Biodiversity

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 48-05 elevated CO2

text: agricultural field

text: agricultural field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Hordeum vulgare

text: Barley rhizosphere procaryotes

text: Hordeum vulgare

text: Illumina MiSeq

text: soil

text: Barley rhizosphere procaryotes


44-01 ambient CO2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Thünen Institute of Biodiversity

characteristic: INSDC first public

text: public

text: 44-01 ambient CO2

text: agricultural field

text: agricultural field

text: soil

text: Germany

text: metagenome

characteristic: investigation type

text: Hordeum vulgare

text: Barley rhizosphere procaryotes

characteristic: project name

text: Hordeum vulgare

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Barley rhizosphere procaryotes

characteristic: title


55-12 elevated CO2

characteristic: ENA-CHECKLIST

text: Thünen Institute of Biodiversity

characteristic: INSDC last update

text: public

text: 55-12 elevated CO2

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: agricultural field

characteristic: environment (biome)

text: agricultural field

text: soil

text: Germany

characteristic: geographic location (elevation)

text: metagenome

text: Hordeum vulgare

characteristic: organism

text: Barley rhizosphere procaryotes

text: Hordeum vulgare

text: Illumina MiSeq

text: soil

text: Barley rhizosphere procaryotes