text: public

text: E-MTAB-39101469448482:Hfq-Flag_Log_Phase_CL_delta_gcvB_pgcvB_Repeat3

text: ArrayExpress

text: cross link RNA

characteristic: experimental process

text: Hfq-flag

text: log phase


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-39101469448482:Total_Hfq-Flag_Iron_Limitation_CL_Repeat1

tag: Namespace:The Hebrew University of Jerusalem, Israel

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: E .coli Strains MG1655 and HM34 were grown overnight in LB at 37 °C with shaking (200 r.p.m.), diluted 100-fold in fresh LB, and re-grown with shaking at 37 °C to log phase (OD600 = 0.5), with the addition of 2,2'-Dipyridyl (200 µM, 30 min) RNA was extracted according to the standard LS-TriReagent protocol (Sigma) RNAtag-Seq protocol (Shishkin et al., 2015)

characteristic: description

text: cross link RNA

text: Hfq-flag

characteristic: genotype

text: iron limitation in log phase

characteristic: growth condition

text: Escherichia coli str. K-12 substr. MG1655

characteristic: organism

characteristic: title


text: The Hebrew University of Jerusalem, Israel

text: public

text: E-MTAB-39101469448482:Total_Hfq-Flag_Iron_Limitation_CL_Repeat2

text: ArrayExpress

text: cross link RNA

characteristic: experimental process

text: Hfq-flag

text: iron limitation in log phase


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-39101469448482:Total_Hfq-Flag_Iron_Limitation_CL_Repeat3

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: iron limitation in log phase


characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-39101469448482:Total_Hfq-Flag_Log_Phase_CL_Repeat1

text: ArrayExpress

text: Protocols: E .coli Strains MG1655 and HM34 were grown overnight in LB at 37 °C with shaking (200 r.p.m.), diluted 100-fold in fresh LB, and re-grown with shaking at 37 °C to log phase (OD600 = 0.5) RNA was extracted according to the standard LS-TriReagent protocol (Sigma) RNAtag-Seq protocol (Shishkin et al., 2015)

text: cross link RNA

text: Hfq-flag

text: log phase


characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-39101469448482:Total_Hfq-Flag_Log_Phase_CL_Repeat2

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: log phase


characteristic: External Id

text: public

text: E-MTAB-39101469448482:Total_Hfq-Flag_Log_Phase_CL_Repeat3

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: log phase


characteristic: INSDC center name

text: public

text: E-MTAB-39101469448482:Total_Hfq-Flag_Log_Phase_CL_Repeat4

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: log phase


characteristic: INSDC first public

text: public

text: E-MTAB-39101469448482:Total_Hfq-Flag_Log_Phase_CL_Repeat5

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: log phase


characteristic: INSDC last update

text: public

text: E-MTAB-39101469448482:Total_Hfq-Flag_Log_Phase_CL_Repeat6

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: log phase


text: public

characteristic: INSDC status

text: E-MTAB-39101469448482:Total_Hfq-Flag_Stationary_Phase_CL_Repeat1

text: ArrayExpress

text: Protocols: E .coli Strains MG1655 and HM34 were grown overnight in LB at 37 °C with shaking (200 r.p.m.), diluted 100-fold in fresh LB, and re-grown with shaking at 37 °C to stationary phase (6 hr) RNA was extracted according to the standard LS-TriReagent protocol (Sigma) RNAtag-Seq protocol (Shishkin et al., 2015)

text: cross link RNA

text: Hfq-flag

text: stationary phase


text: public

characteristic: SRA accession

text: E-MTAB-39101469448482:Total_Hfq-Flag_Stationary_Phase_CL_Repeat2

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: stationary phase


text: public

text: E-MTAB-39101469448482:Total_Hfq-Flag_Stationary_Phase_CL_Repeat3

characteristic: Submitter Id

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: stationary phase


text: Agricultural University of Athens

text: public

tag: Namespace:Agricultural University of Athens

text: Complete genome sequence of Streptococcus thermophilus ACA-DC 2

text: Yogurt

characteristic: isolation source

text: Streptococcus thermophilus

text: Streptococcus thermophilus

text: ACA-DC 2

characteristic: strain

text: Complete genome of Streptococcus thermophilus ACA-DC 2


text: university clinic Essen

text: public

tag: Namespace:university clinic Essen

text: human

characteristic: common name

text: genomic mutations of eEF2K in HCC

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: tissue type

text: genomic mutations of eEF2K in HCC

type: has member


text: university clinic Essen

text: public

text: human

text: genomic mutations of eEF2K in HCC

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: genomic mutations of eEF2K in liver tissue

characteristic: title


characteristic: ENA-CHECKLIST

text: ICL-CFB

text: public

text: 7 days old Cysts

characteristic: age

text: ArrayExpress

characteristic: broker name

text: MDCK Type II

characteristic: cell line

text: dog

text: Protocols: MDCK cysts growth HGF treatment RNAeasy Miniprep Kit Illumina TruSeq

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Canis lupus familiaris

text: 12 Hours of HGF exposure

characteristic: stimulus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BUGS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Togo

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: CSF

text: Streptococcus suis

text: Streptococcus suis


text: BAYLOR COLLEGE OF ME

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:BAYLOR COLLEGE OF ME

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: SSwes


characteristic: ENA-CHECKLIST

text: Centre for Organismal Studies (COS)

text: public

tag: Namespace:Centre for Organismal Studies (COS)

text: ArrayExpress

characteristic: broker name

text: Protocols: 17-18 days old seedlings from Sex-1 and Apo-1 accessions were used. Seedlings were snap-frozen and kept at -80ºC until RNA extraction Plants were grown in a dedicated plant growth chamber with 16-hours photo period/8-hours darkness cycle, 60-65% humidity and 22ºC. Leaves from all the plants were ploidy genotyped either in a Partec flow cytometer (Sysmex, Germany) or in a Guava® easyCyte flow cytometer (Millipore, USA). RNA Extraction was performed using QIAGEN RNeasy Mini Kit and DNase-treated according to manufacturer’s instructions (Qiagen, USA). The RNA quality was further validated in a Bioanalyzer (Life Technologies, USA). library preparation was performed as per the routine pipeline established at the facility of Fasteris

characteristic: description

text: Boechera gunnisoniana

text: Boechera gunnisoniana

text: seedling

characteristic: organism part

text: sexual reproduction

characteristic: phenotype

text: Boechera gunnisoniana

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Organismal Studies (COS)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Boechera Stricta

text: Boechera Stricta

text: seedling

text: apomixis reproduction

text: Boechera Stricta


text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY COLLEGE LONDON

text: human

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


text: KI-BN

text: public

characteristic: INSDC status

text: synthetic construct

text: synthetic construct

text: HT-SELEX for ZNF394 using an extended DBD construct


zuhua

text: SMU

text: public

characteristic: SRA accession

text: zuhua

text: feces metagenome

text: feces metagenome


rong

text: SMU

text: public

text: rong

characteristic: Submitter Id

text: feces metagenome

text: feces metagenome


text: UCSDMI

text: public

text: Missing: Not provided

characteristic: age

text: drone

characteristic: age group

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:tissue

characteristic: body product

text: UBERON:intestine

characteristic: body site

text: True

text: insect gut metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Whole intestine tissue, with food content.

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: True

characteristic: latitude

characteristic: longitude

text: insect gut metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee intestine with content

characteristic: sample type

text: insect gut metagenome

text: male

characteristic: sex

text: Microbiome of honey bees from Puerto Rico

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: drone

characteristic: age group

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:tissue

characteristic: body product

text: UBERON:intestine

characteristic: body site

text: True

text: insect gut metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: True

text: insect gut metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: bee intestine with content

text: insect gut metagenome

text: male

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: nurse

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:tissue

text: UBERON:intestine

text: False

text: insect gut metagenome

text: GAZ:Puerto Rico

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: False

characteristic: latitude

characteristic: longitude

text: insect gut metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee intestine with content

characteristic: sample type

text: insect gut metagenome

text: female

characteristic: sex

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: worker

characteristic: age group

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:tissue

characteristic: body product

text: UBERON:intestine

characteristic: body site

text: False

text: insect gut metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: False

text: insect gut metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: bee intestine with content

text: insect gut metagenome

text: female

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: worker

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:tissue

text: UBERON:intestine

text: False

text: insect gut metagenome

text: GAZ:Puerto Rico

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: False

characteristic: latitude

characteristic: longitude

text: insect gut metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee intestine with content

characteristic: sample type

text: insect gut metagenome

text: female

characteristic: sex

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: worker

characteristic: age group

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:tissue

characteristic: body product

text: UBERON:intestine

characteristic: body site

text: True

text: insect gut metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: True

text: insect gut metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: bee intestine with content

text: insect gut metagenome

text: female

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Missing: Not provided

text: queen

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:tissue

text: UBERON:intestine

text: True

text: insect gut metagenome

text: GAZ:Puerto Rico

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: True

characteristic: latitude

characteristic: longitude

text: insect gut metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee intestine with content

characteristic: sample type

text: insect gut metagenome

text: female

characteristic: sex

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: worker

characteristic: age group

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:tissue

characteristic: body product

text: UBERON:intestine

characteristic: body site

text: Missing: Not provided

text: False

text: insect gut metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: False

text: insect gut metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: bee intestine with content

text: insect gut metagenome

text: female

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: nurse

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:tissue

text: UBERON:intestine

text: Missing: Not provided

text: False

text: insect gut metagenome

text: GAZ:Puerto Rico

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: False

characteristic: latitude

characteristic: longitude

text: insect gut metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee intestine with content

characteristic: sample type

text: insect gut metagenome

text: female

characteristic: sex

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: queen

characteristic: age group

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:tissue

characteristic: body product

text: UBERON:intestine

characteristic: body site

text: Missing: Not provided

text: True

text: insect gut metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: True

text: insect gut metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: bee intestine with content

text: insect gut metagenome

text: female

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: age

text: nurse

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:tissue

text: UBERON:intestine

text: False

text: insect gut metagenome

text: GAZ:Puerto Rico

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

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text: False

characteristic: latitude

characteristic: longitude

text: insect gut metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee intestine with content

characteristic: sample type

text: insect gut metagenome

text: female

characteristic: sex

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: worker

characteristic: age group

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:tissue

characteristic: body product

text: UBERON:intestine

characteristic: body site

text: Missing: Not provided

text: True

text: insect gut metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: True

text: insect gut metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: bee intestine with content

text: insect gut metagenome

text: female

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: queen

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:tissue

text: UBERON:intestine

text: True

text: insect gut metagenome

text: GAZ:Puerto Rico

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: True

characteristic: latitude

characteristic: longitude

text: insect gut metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee intestine with content

characteristic: sample type

text: insect gut metagenome

text: female

characteristic: sex

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

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text: UBERON:multi-cellular organism

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text: UBERON:tissue

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text: Missing: Not provided

text: True

text: insect gut metagenome

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text: GAZ:Puerto Rico

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text: village biome

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text: UBERON:multi-cellular organism

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text: insect gut metagenome

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characteristic: elevation

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text: True

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text: days

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text: True

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text: Complete Head

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text: PuertoRico:Gurabo

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text: organic material

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text: UBERON:tissue

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text: False

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text: Complete Head

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text: True

text: village biome

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text: organic material

text: host-associated

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text: PuertoRico:Gurabo

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text: True

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text: insecta-associated habitat

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text: organic material

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text: host-associated

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text: PuertoRico:Gurabo

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text: honey bee

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text: False

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text: True

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text: organic material

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text: True

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text: False

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text: Complete Head

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text: True

text: village biome

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text: PuertoRico:Gurabo

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text: host-associated

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text: True

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text: Missing: Not provided

text: True

text: insect metagenome

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text: GAZ:Puerto Rico

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text: Complete Head

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text: True

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text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: True

text: insect metagenome

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text: completed

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text: Complete Head

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text: insecta-associated habitat

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text: organic material

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text: False

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text: Complete Head

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text: True

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text: PuertoRico:Gurabo

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text: True

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text: True

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text: PuertoRico:Gurabo

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text: Missing: Not provided

text: True

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text: Complete Head

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text: True

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text: organic material

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text: organic material

text: PuertoRico:Gurabo

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text: Apis mellifera

text: True

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characteristic: elevation

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text: True

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text: True

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characteristic: Submitter Id

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:secretion

characteristic: body product

text: UBERON:hypopharynx

characteristic: body site

text: Missing: Not provided

text: True

text: insect metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Royal Jelly preserved and frozen

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: Royal Jelly 30

text: True

text: insect metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: royal jelly

text: insect metagenome

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:secretion

text: UBERON:hypopharynx

text: Missing: Not provided

text: True

text: insect metagenome

text: GAZ:Puerto Rico

text: Royal Jelly preserved and frozen

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

text: Royal Jelly 36

characteristic: host subject id

characteristic: host taxid

text: True

characteristic: latitude

characteristic: longitude

text: insect metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: royal jelly

characteristic: sample type

text: insect metagenome

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:secretion

characteristic: body product

text: UBERON:hypopharynx

characteristic: body site

text: Missing: Not provided

text: True

text: insect metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Royal Jelly preserved and frozen

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: Royal Jelly P4

text: True

text: insect metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: royal jelly

text: insect metagenome

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: larvae

characteristic: age group

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:body

text: UBERON:body

text: True

text: insect metagenome

text: GAZ:Puerto Rico

text: Whole Larval Body

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: True

characteristic: latitude

characteristic: longitude

text: insect metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee larva

characteristic: sample type

text: insect metagenome

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: larvae

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:body

characteristic: body product

text: UBERON:body

characteristic: body site

text: True

text: insect metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Whole Larval Body

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: True

text: insect metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: bee larva

text: insect metagenome

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: pupae

characteristic: age group

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:body

text: UBERON:body

text: True

text: insect metagenome

text: GAZ:Puerto Rico

text: Whole Pupae body

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: True

characteristic: latitude

characteristic: longitude

text: insect metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee pupa

characteristic: sample type

text: insect metagenome

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: larvae

text: days

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: True

text: UBERON:multi-cellular organism

characteristic: body habitat

text: UBERON:body

characteristic: body product

text: UBERON:body

characteristic: body site

text: Missing: Not provided

text: True

text: insect metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Whole Larval Body

characteristic: description

text: True

text: village biome

text: insecta-associated habitat

text: organic material

text: host-associated

text: organic material

text: PuertoRico:Gurabo

text: honey bee

text: Apis mellifera

text: True

text: insect metagenome

characteristic: organism

text: ANL

text: FALSE

text: True

text: completed

text: bee larva

text: insect metagenome

characteristic: title

text: Gurabo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: pupae

characteristic: age group

text: days

text: True

text: UBERON:multi-cellular organism

text: UBERON:body

text: UBERON:body

text: Missing: Not provided

text: True

text: insect metagenome

text: GAZ:Puerto Rico

text: Whole Pupae body

text: True

characteristic: elevation

text: village biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: organic material

characteristic: env matter

text: host-associated

characteristic: env package

text: organic material

text: PuertoRico:Gurabo

characteristic: geo loc name

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: True

characteristic: latitude

characteristic: longitude

text: insect metagenome

text: ANL

text: FALSE

text: True

characteristic: public

text: completed

text: bee pupa

characteristic: sample type

text: insect metagenome

text: Gurabo

characteristic: village


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: Submitter Id

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: clpX suppressor

characteristic: title


CNCM I-4031

text: INRA ONIRIS

text: public

text: CNCM I-4031

tag: Namespace:INRA ONIRIS

text: Lactococcus piscium

text: Lactococcus piscium

text: CNCM I-4031

characteristic: strain

text: complete sequence of Lactococcus piscium CNCM I-4031


text: UNIVERSITY OF COPENHAGEN

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: SA564 clpX


text: University of Lubeck

text: public

tag: Namespace:University of Lubeck

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: investigation type

text: Homo sapiens

text: Gut Microbiome of Parkinson

characteristic: project name

text: Homo sapiens

text: MiSeq

characteristic: sequencing method

text: Gut patient


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Lubeck

text: public

text: human

text: Germany

text: Homo sapiens

text: Gut Microbiome of Parkinson

text: Homo sapiens

text: MiSeq

text: Gut control


text: University of Cambridge

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Cambridge

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: long day conditions (16 hr light), 20 degrees Celcius Arabidopsis thaliana rosette leaves TruSeq DNA sample prep kit. Illumina sequencing

text: HEI10 Col/Ler F2

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana


text: Ceftriaxone sensitive (0.094mg/l); Azithromycin sensitive 0.5mg/l)

characteristic: AMR

text: PHE

text: public

text: GBR

characteristic: NG-MAST type

characteristic: SRA accession

characteristic: Submitter Id

text: Azi sensitive

characteristic: description

text: Neisseria

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae

text: serogroup w11/111

characteristic: serogroup

text: male - utheral site

characteristic: source

characteristic: title

type: AMR curated data - CABBAGE

value: ceftriaxone

value: broth dilution

value: mg/L

value: Neisseria gonorrhoeae

value: azithromycin


text: Ceftriaxone sensitive (0.094mg/l); Azithromycin sensitive 0.75mg/l)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

text: Azi sensitive

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: male - utheral site


text: Ceftriaxone sensitive (0.008mg/l); Azithromycin reisistant (>256mg/l)

characteristic: AMR

text: PHE

text: public

text: GBR

characteristic: NG-MAST type

characteristic: SRA accession

characteristic: Submitter Id

text: HL-AziR

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: male - utheral site


text: PHE

text: public

text: GBR

text: Azi sensitive

characteristic: description

text: Neisseria

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: female - cervical site


text: PHE

text: public

text: GBR

text: Azi sensitive

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae

text: serogroup w11/111

characteristic: serogroup

text: male - utheral site

characteristic: source

characteristic: title


text: Ceftriaxone sensitive (0.016mg/l); Azithromycin reisistant (>256mg/l)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHE

text: public

text: GBR

text: HL-AziR

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: male - utheral site


text: Ceftriaxone sensitive (0.004mg/l); Azithromycin reisistant (>256mg/l)

text: PHE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

text: HL-AziR

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: female - cervical site


text: Ceftriaxone sensitive (0.006mg/l); Azithromycin reisistant (>256mg/l)

characteristic: AMR

text: PHE

text: public

text: GBR

characteristic: NG-MAST type

characteristic: SRA accession

characteristic: Submitter Id

text: HL-AziR

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: male - utheral site


text: PHE

text: public

text: GBR

text: HL-AziR

characteristic: description

text: Neisseria

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: male - utheral site


text: Ceftriaxone sensitive (0.023mg/l); Azithromycin reisistant (>256mg/l)

text: PHE

text: public

text: GBR

text: HL-AziR

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae

text: serogroup w11/111

characteristic: serogroup

text: female - throat site

characteristic: source

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHE

text: public

text: GBR

text: HL-AziR

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: female - cervical site


text: PHE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

text: HL-AziR

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: male - rectal


text: Ceftriaxone sensitive (0.012mg/l); Azithromycin reisistant (>256mg/l)

characteristic: AMR

text: PHE

text: public

text: GBR

characteristic: NG-MAST type

characteristic: SRA accession

characteristic: Submitter Id

text: HL-AziR

text: Neisseria

text: Homo sapiens

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: male - utheral site


text: PHE

text: public

text: GBR

text: Azi sensitive

characteristic: description

text: Neisseria

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: serogroup w11/111

text: male - pharyngeal


text: public

text: Isolat10_1_IonXpress_003_R_2012_11_15_08_02_41_user_SN1-87_Auto_user_SN1-87_88

tag: Namespace:Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: DTU-GE

characteristic: broker name

text: The clinical microbiological laboratory at Hvidovre Hospital

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E. coli, ST409

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Clinical samples

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Isolat12_IonXpress_002_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80

characteristic: Submitter Id

text: DTU-GE

text: No

text: Denmark

text: diseased

text: Human

text: Yes

text: E. coli, ST95

text: Escherichia coli

text: Escherichia coli

text: Clinical samples


text: public

text: Isolat19_IonXpress_004_R_2012_11_15_08_02_41_user_SN1-87_Auto_user_SN1-87_88

text: DTU-GE

characteristic: broker name

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: diseased

text: Human

text: Yes

text: . coli, ST127

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: Clinical samples


characteristic: ENA-CHECKLIST

text: public

text: Isolat20_IonXpress_005_R_2012_11_15_08_02_41_user_SN1-87_Auto_user_SN1-87_88

text: DTU-GE

text: No

text: Denmark

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E. coli, ST1193

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Clinical samples

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Isolat21_combine_IonXpress_006_R_2012_11_16_14_31_50

text: DTU-GE

text: No

text: Denmark

text: diseased

text: Human

text: Yes

text: P. mirabilis

text: Proteus mirabilis

text: Proteus mirabilis

text: Clinical samples


text: public

characteristic: SRA accession

text: Isolat24_combine_IonXpress_009_R_2012_11_16_14_31_50

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Human

text: Yes

text: E. coli, ST227

text: Escherichia coli

text: Escherichia coli

text: Clinical samples


characteristic: ENA-CHECKLIST

text: public

text: Isolat25_combine_IonXpress_010_R_2012_11_16_09_40_45

text: DTU-GE

text: No

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E. faecalis, ST16

characteristic: isolate

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Clinical samples


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Isolat26_IonXpress_003_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80

text: DTU-GE

text: No

text: Denmark

text: diseased

text: Human

text: Yes

text: E. coli, ST597

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Clinical samples

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Isolat27_IonXpress_012_R_2012_11_16_09_40_45_user_SN1-88_Auto_user_SN1-88_89

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

characteristic: collected by

characteristic: collection date

text: No

text: Denmark

text: diseased

text: Human

text: Yes

text: S. lugdunensis

text: Staphylococcus lugdunensis

text: Staphylococcus lugdunensis

text: Clinical samples


characteristic: ENA-CHECKLIST

text: public

text: Isolat28_IonXpress_004_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80

text: DTU-GE

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

text: Yes

text: Mixed culture

text: mixed culture ATCC 39027

text: mixed culture ATCC 39027

text: Clinical samples


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Isolat29_combine_IonXpress_013_R_2012_11_21_13_36_55

text: DTU-GE

text: No

text: Denmark

text: diseased

text: Human

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E. faecalis, ST19

characteristic: isolate

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Clinical samples


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Isolat31_1_IonXpress_009_R_2012_12_06_09_02_39_user_SN1-98_Auto_user_SN1-98_99

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: No

text: Denmark

text: diseased

text: Human

text: Yes

text: E. faecalis

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: Clinical samples

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: Isolat32_combine_IonXpress_010_R_2012_11_28_14_01_47

text: DTU-GE

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

text: Human

text: Yes

text: E. faecalis, ST41

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Clinical samples


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Isolat33_combine_IonXpress_011_R_2012_11_28_14_01_47

text: DTU-GE

text: No

text: Denmark

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

text: Yes

text: E. faecalis, ST40

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Clinical samples


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Isolat34_combine_IonXpress_012_R_2012_11_28_14_01_47

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: No

text: Denmark

text: diseased

text: Human

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Mixed culture

characteristic: isolate

text: mixed culture ATCC 39027

text: mixed culture ATCC 39027

text: Clinical samples


characteristic: ENA-CHECKLIST

text: public

text: Isolat35_combine_IonXpress_013_R_2012_11_28_14_01_47

text: DTU-GE

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Human

text: Yes

text: E. coli, E. faecalis

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: Clinical samples

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Isolat3_IonXpress_006_R_2012_12_06_09_02_39_user_SN1-98_Auto_user_SN1-98_99

text: DTU-GE

text: The clinical microbiological laboratory at Hvidovre Hospital

text: No

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

text: Human

text: Yes

text: E. faecalis, ST40

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Clinical samples


text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Isolat4_IonXpress_007_R_2012_12_06_09_02_39_user_SN1-98_Auto_user_SN1-98_99

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: No

text: Denmark

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

text: Yes

text: Clostridium

text: Clostridium beijerinckii NCIMB 8052

text: Clostridium beijerinckii NCIMB 8052

text: Clinical samples


characteristic: ENA-CHECKLIST

text: public

text: Isolat6_IonXpress_001_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80

text: DTU-GE

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Human

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E. coli, ST14

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: Clinical samples


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Food Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Institute  of Food Research

text: term baby

characteristic: description

text: human gut

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: United Kingdom

text: human-gut

characteristic: humam oral environmental package

text: metagenome

characteristic: investigation type

text: feces metagenome

characteristic: organism

text: early life microbiota

characteristic: project name

text: feces metagenome

text: HiSeq 2000

characteristic: sequencing method

text: infant faeces

characteristic: title


HV04073 cp complete genome

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HV04073 cp complete genome

tag: Namespace:School of BioSciences, The University of Melbourne

characteristic: Submitter Id

text: Actinotrichia fragilis

text: Actinotrichia fragilis

characteristic: specimen voucher

text: Actinotrichia fragilis HV04073 cp complete genome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Food Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: preterm faeces no probiotic

text: human gut

text: human gut

text: human gut

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: feces metagenome

text: early life microbiota

text: feces metagenome

text: HiSeq 2000 Illumina

text: infant faeces


text: UNIVERSITY OF EXETER

text: public

tag: Namespace:UNIVERSITY OF EXETER

text: roach minnow

characteristic: common name

text: Genomic sequences of roach from the UK

characteristic: description

text: Rutilus rutilus

characteristic: organism

text: Rutilus rutilus

text: male

characteristic: sex

text: Sequences from roach from the UK

characteristic: title


characteristic: ENA-CHECKLIST

text: Institute of Food Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: preterm probiotic

text: human gut

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: United Kingdom

text: human-gut

text: metagenome

characteristic: investigation type

text: feces metagenome

text: early life microbiota

characteristic: project name

text: feces metagenome

text: HiSeq 2000

characteristic: sequencing method

text: infant faeces


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Center for Molecular Medicine University of Cologne

text: ArrayExpress

characteristic: broker name

text: induced pluripotent stem cell

characteristic: cell type

text: human

text: Protocols: Organoids were derived from healthy human induced pluripotent stem cells in vitro as previously described (Gabriel et al., EMBO J., 2016). RNA from 3 organoids infected with the Brazilian Zika virus strain and 3 control organoids was isolated and subjected to high-throughput sequencing. PolyA+ TruSeq protocol

text: control

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Center for Molecular Medicine University of Cologne

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: induced pluripotent stem cell

text: human

characteristic: common name

characteristic: description

text: control

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: ZIKV infection

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


J.0258 cp complete genome

characteristic: ENA-FIRST-PUBLIC

text: School of BioSciences, The University of Melbourne

text: public

text: J.0258 cp complete genome

text: Dermonema virens

text: Dermonema virens

characteristic: specimen voucher

text: J.0258 cp complete genome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MELBOURNE

text: public

tag: Namespace:UNIVERSITY OF MELBOURNE

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: host health state

text: human

characteristic: host scientific name

characteristic: isolate

text: human

characteristic: isolation source

text: Enterococcus faecium

text: Enterococcus faecium


HV04073 cp complete genome1

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: HV04073 cp complete genome1

text: Actinotrichia fragilis

text: Actinotrichia fragilis

text: HV04073 cp complete genome1


HV04060 cp complete genome

text: public

characteristic: SRA accession

text: HV04060 cp complete genome

text: HV04060 Dichotomaria marginata cp complete genome

characteristic: description

text: Dichotomaria marginata

characteristic: organism

text: Dichotomaria marginata

text: HV04060 cp complete genome

characteristic: title


JFC0074 cp complete genome

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: JFC0074 cp complete genome

characteristic: Submitter Id

text: JFC0074 Galaxaura rugosa cp complete genome

text: Galaxaura rugosa

text: Galaxaura rugosa

characteristic: specimen voucher

text: JFC0074 cp complete genome


characteristic: External Id

text: UCSDMI

text: public

text: qiita_sid_2024:2024.birth.MNIH01UP.BFF10S.FE

text: adult

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: TRUE

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: No vaginal swabs due to heavy bleeding

characteristic: comments

text: human gut metagenome

characteristic: common name

characteristic: compliance

text: GAZ:Tanzania

characteristic: country

characteristic: date extracted

characteristic: depth

text: TRUE

characteristic: dob

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: hospital

characteristic: env feature

text: feces

characteristic: env matter

text: host-associated

characteristic: env package

text: feces

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

characteristic: height or length

characteristic: hemoglobin

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: hiv

text: human

characteristic: host common name

text: Homo Sapiens

characteristic: host subject id

characteristic: host taxid

text: MIssing: Not provided

text: alive

text: MIssing: Not provided

characteristic: latitude

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human gut metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: FALSE

text: completed

text: stool

text: human gut metagenome

text: female

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: The microbiota at multiple body sites during pregnancy in a rural Tanzanian population and the effects of Moringa supplemented probiotic yogurt.

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: K


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2024:2024.birth.MNIH01UP.BFF10S.O

characteristic: Submitter Id

text: adult

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: TRUE

characteristic: bmi

text: UBERON:oral cavity

characteristic: body habitat

text: UBERON:saliva

characteristic: body product

text: UBERON:mouth

characteristic: body site

text: No vaginal swabs due to heavy bleeding

characteristic: comments

text: human oral metagenome

characteristic: common name

characteristic: compliance

text: GAZ:Tanzania

characteristic: description

text: TRUE

text: dense settlement biome

text: hospital

text: saliva

text: host-associated

text: saliva

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: human

text: Homo Sapiens

characteristic: host scientific name

text: MIssing: Not provided

text: alive

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human oral metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: FALSE

text: completed

text: saliva

text: human oral metagenome

text: female

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: MIssing: Not provided

text: MIssing: Not provided

text: D


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiita_sid_2024:2024.birth.MNIH01UP.BFF10S.infant.FE

text: infant

text: Missing: Not provided

text: years

text: TRUE

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: GAZ:Tanzania

characteristic: country

characteristic: date extracted

characteristic: depth

text: TRUE

characteristic: dob

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: hospital

characteristic: env feature

text: feces

characteristic: env matter

text: host-associated

characteristic: env package

text: feces

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: height or length

text: Missing: Not recorded

characteristic: hemoglobin

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: hiv

text: human

characteristic: host common name

text: Homo Sapiens

characteristic: host subject id

characteristic: host taxid

text: MIssing: Not provided

text: alive

text: MIssing: Not provided

characteristic: latitude

text: MIssing: Not provided

characteristic: lims

text: MIssing: Not provided

characteristic: live births

text: MIssing: Not provided

characteristic: longitude

text: MIssing: Not provided

characteristic: malaria

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human gut metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: FALSE

text: MIssing: Not provided

text: completed

text: MIssing: Not provided

text: stool

text: human gut metagenome

text: female

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: K


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2024:2024.birth.MNIH01UP.BFF10S.infant.O

characteristic: Submitter Id

text: infant

text: Missing: Not provided

characteristic: age

text: years

characteristic: age unit

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: UBERON:oral cavity

characteristic: body habitat

text: UBERON:saliva

characteristic: body product

text: UBERON:mouth

characteristic: body site

text: human oral metagenome

characteristic: common name

characteristic: compliance

text: GAZ:Tanzania

characteristic: country

characteristic: date extracted

characteristic: depth

characteristic: description

text: TRUE

characteristic: dob

text: dense settlement biome

text: hospital

text: saliva

text: host-associated

text: saliva

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: human

text: Homo Sapiens

characteristic: host scientific name

text: MIssing: Not provided

text: alive

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human oral metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: FALSE

text: MIssing: Not provided

text: completed

text: MIssing: Not provided

text: saliva

text: human oral metagenome

text: female

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: Missing: Not reported

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2024:2024.birth.MNIH02UP.BFF10F.BM

text: adult

text: years

text: TRUE

characteristic: bmi

text: UBERON:breast

text: UBERON:breast milk

text: UBERON:mammary gland

text: i

text: human milk metagenome

text: GAZ:Tanzania

text: TRUE

characteristic: elevation

text: dense settlement biome

characteristic: env biome

text: hospital

characteristic: env feature

text: breast milk

characteristic: env matter

text: host-associated

characteristic: env package

text: breast milk

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: Missing: Not recorded

text: TRUE

text: TRUE

text: Missing: Not recorded

characteristic: height or length

characteristic: hemoglobin

text: Missing: Not recorded

text: Missing: Not recorded

characteristic: hiv

text: human

characteristic: host common name

text: Homo Sapiens

characteristic: host subject id

characteristic: host taxid

text: MIssing: Not provided

text: alive

text: MIssing: Not provided

characteristic: latitude

text: MIssing: Not provided

characteristic: lims

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: human milk metagenome

text: MIssing: Not provided

text: MIssing: Not provided

text: TRUE

text: UWO

text: UWO

text: FALSE

text: MIssing: Not provided

text: FALSE

text: completed

text: breast milk

text: human milk metagenome

text: female

text: female

text: MIssing: Not provided

text: MIssing: Not provided

text: MIssing: Not provided

text: FALSE

text: MIssing: Not provided

text: L