E-MTAB-5171:Margin oxBS-seq part 1

text: CRUK-CI University of Cambridge

text: public

text: E-MTAB-5171:Margin oxBS-seq part 1

text: ArrayExpress

characteristic: broker name

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: normal

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female

text: Margin oxBS-seq part 1


E-MTAB-5171:Margin oxBS-seq part 2

status: PUBLIC

tag: attribute

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characteristic: External Id

text: CRUK-CI University of Cambridge

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5171:Margin oxBS-seq part 2

tag: Namespace:CRUK-CI University of Cambridge

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

text: Surgical sample taken from the non-enhancing margin

text: human

text: Protocols: Brain tumour biopsies were fixed in 10% formalin and embedded in paraffin wax from which 4-µm-thick sections were cut and stained with haematoxylin and eosin. The diagnosis of glioblastoma multiforme (WHO grade IV) was made by light microscopical examination of H&E-stained sections. Supra-total resection of a right frontal intrinsic tumour with maximum diameter of the enhancing component of 19mm, surrounded by only minimal oedema. Surgical samples were taken from the enhancing tumour mass and corresponding non-enhancing margin using advanced surgical techniques. Each tumour and margin sample was frozen to -80°C immediately on collection. The frozen samples were then defrosted and a 50 mg portion taken for DNA/RNA extraction. The samples were homogenised and then divided for DNA and RNA extraction. DNA extraction of both tissues and blood was performed using the QIAGEN DNeasy Blood and Tissue Kit, RNA extraction was performed using the QIAGEN RNeasy Mini Kit. Quantification was performed using the Qubit quantification assay. The tumour/normal pair used in this study was the sample judged most pure by comparison with blood DNA using whole genome sequencing. PCR-free ReBuilT libraries for bisulfite sequencing were generated following our previously published method (pubmed id: 27031619). For the generation of PCR-free libraries for oxBS, libraries were oxidised (TrueMethyl Kit from CEGX) prior to bisulfite treatment. In brief, 350 and 175 ng of sonicated DNA from tumour and margin respectively were end repaired and dA-tailed before ligation of customized adapter pair. After (oxidative)-bisulfite treatment, degraded fragments were recovered through primer extension before dA-tailing and second adapter ligation. The high-resolution aim of this project led to divide each sample in 3 parts in order to be able to perform sequencing. Parts were subsequently immobilized on streptavidin coated magnetic beads, washed with binding buffer, eluted with 50 mM NaOH at 60°C for 15 minutes.

text: normal

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Margin oxBS-seq part 2

characteristic: title

type: has member


E-MTAB-5171:Margin oxBS-seq part 3

text: CRUK-CI University of Cambridge

text: public

text: E-MTAB-5171:Margin oxBS-seq part 3

text: ArrayExpress

characteristic: broker name

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: normal

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female

text: Margin oxBS-seq part 3


E-MTAB-5171:Tumour BS-seq part 1

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CRUK-CI University of Cambridge

text: public

text: E-MTAB-5171:Tumour BS-seq part 1

text: ArrayExpress

text: Surgical sample taken from the enhancing tumour mass

text: human

text: Protocols: Brain tumour biopsies were fixed in 10% formalin and embedded in paraffin wax from which 4-µm-thick sections were cut and stained with haematoxylin and eosin. The diagnosis of glioblastoma multiforme (WHO grade IV) was made by light microscopical examination of H&E-stained sections. Supra-total resection of a right frontal intrinsic tumour with maximum diameter of the enhancing component of 19mm, surrounded by only minimal oedema. Surgical samples were taken from the enhancing tumour mass and corresponding non-enhancing margin using advanced surgical techniques. PCR-free ReBuilT libraries for bisulfite sequencing were generated following our previously published method (pubmed id: 27031619). For the generation of PCR-free libraries for oxBS, libraries were oxidised (TrueMethyl Kit from CEGX) prior to bisulfite treatment. In brief, 350 and 175 ng of sonicated DNA from tumour and margin respectively were end repaired and dA-tailed before ligation of customized adapter pair. After (oxidative)-bisulfite treatment, degraded fragments were recovered through primer extension before dA-tailing and second adapter ligation. The high-resolution aim of this project led to divide each sample in 3 parts in order to be able to perform sequencing. Parts were subsequently immobilized on streptavidin coated magnetic beads, washed with binding buffer, eluted with 50 mM NaOH at 60°C for 15 minutes. Each tumour and margin sample was frozen to -80°C immediately on collection. The frozen samples were then defrosted and a 50 mg portion taken for DNA/RNA extraction. The samples were homogenised and then divided for DNA and RNA extraction. DNA extraction of both tissues and blood was performed using the QIAGEN DNeasy Blood and Tissue Kit, RNA extraction was performed using the QIAGEN RNeasy Mini Kit. Quantification was performed using the Qubit quantification assay. The tumour/normal pair used in this study was the sample judged most pure by comparison with blood DNA using whole genome sequencing. PCR-free ReBuilT libraries for bisulfite sequencing were generated following our previously published method (pubmed id: 27031619). For the generation of PCR-free libraries for oxBS, libraries were oxidised (TrueMethyl Kit from CEGX) prior to bisulfite treatment. In brief, 350 and 175 ng of sonicated DNA from tumour and margin respectively were end repaired and dA-tailed before ligation of customized adapter pair. After (oxidative)-bisulfite treatment, degraded fragments were recovered through primer extension before dA-tailing and second adapter ligation. The high-resolution aim of this project led to divide each sample in 3 parts in order to be able to perform sequencing. Parts were subsequently immobilized on streptavidin coated magnetic beads, washed with binding buffer, eluted with 50 mM NaOH at 60°C for 15 minutes.

text: glioblastoma multiforme

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female

text: Tumour BS-seq part 1

text: WHO grade IV

characteristic: tumor grading


E-MTAB-5171:Tumour BS-seq part 2

text: CRUK-CI University of Cambridge

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text: public

characteristic: INSDC status

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text: E-MTAB-5171:Tumour BS-seq part 2

text: ArrayExpress

text: human

text: glioblastoma multiforme

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female

text: Tumour BS-seq part 2

text: WHO grade IV


E-MTAB-5171:Tumour BS-seq part 3

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text: public

text: E-MTAB-5171:Tumour BS-seq part 3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: glioblastoma multiforme

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: female

text: Tumour BS-seq part 3

text: WHO grade IV


E-MTAB-5171:Tumour oxBS-seq part 1

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text: E-MTAB-5171:Tumour oxBS-seq part 1

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characteristic: broker name

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text: human

characteristic: common name

text: glioblastoma multiforme

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female

characteristic: sex

text: Tumour oxBS-seq part 1

characteristic: title

text: WHO grade IV


E-MTAB-5171:Tumour oxBS-seq part 2

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text: E-MTAB-5171:Tumour oxBS-seq part 2

text: ArrayExpress

text: human

characteristic: description

text: glioblastoma multiforme

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female

text: Tumour oxBS-seq part 2

text: WHO grade IV


E-MTAB-5171:Tumour oxBS-seq part 3

text: CRUK-CI University of Cambridge

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5171:Tumour oxBS-seq part 3

text: ArrayExpress

text: human

text: glioblastoma multiforme

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female

text: Tumour oxBS-seq part 3

text: WHO grade IV

characteristic: tumor grading


E-MTAB-5171:Tumour RNA-seq

text: CRUK-CI University of Cambridge

text: public

characteristic: SRA accession

text: E-MTAB-5171:Tumour RNA-seq

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: Protocols: Brain tumour biopsies were fixed in 10% formalin and embedded in paraffin wax from which 4-µm-thick sections were cut and stained with haematoxylin and eosin. The diagnosis of glioblastoma multiforme (WHO grade IV) was made by light microscopical examination of H&E-stained sections. Supra-total resection of a right frontal intrinsic tumour with maximum diameter of the enhancing component of 19mm, surrounded by only minimal oedema. Surgical samples were taken from the enhancing tumour mass and corresponding non-enhancing margin using advanced surgical techniques. Libraries for each part of the tumour and margin samples were prepared using TruSeq RNA Access kit (Illumina), using an input of 40 and 20ng respectively. Each tumour and margin sample was frozen to -80°C immediately on collection. The frozen samples were then defrosted and a 50 mg portion taken for DNA/RNA extraction. The samples were homogenised and then divided for DNA and RNA extraction. DNA extraction of both tissues and blood was performed using the QIAGEN DNeasy Blood and Tissue Kit, RNA extraction was performed using the QIAGEN RNeasy Mini Kit. Quantification was performed using the Qubit quantification assay. The tumour/normal pair used in this study was the sample judged most pure by comparison with blood DNA using whole genome sequencing. PCR-free ReBuilT libraries for bisulfite sequencing were generated following our previously published method (pubmed id: 27031619). For the generation of PCR-free libraries for oxBS, libraries were oxidised (TrueMethyl Kit from CEGX) prior to bisulfite treatment. In brief, 350 and 175 ng of sonicated DNA from tumour and margin respectively were end repaired and dA-tailed before ligation of customized adapter pair. After (oxidative)-bisulfite treatment, degraded fragments were recovered through primer extension before dA-tailing and second adapter ligation. The high-resolution aim of this project led to divide each sample in 3 parts in order to be able to perform sequencing. Parts were subsequently immobilized on streptavidin coated magnetic beads, washed with binding buffer, eluted with 50 mM NaOH at 60°C for 15 minutes.

text: glioblastoma multiforme

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: female

text: Tumour RNA-seq

text: WHO grade IV


E-MTAB-5154:Rev-in-nef Residue 1 Input

text: UCSF

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text: Protocols: Viral RNA isolation via ZR-96 Zymo Kit & iScript Advanced Adaptor & Barcode added via PCR

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E-MTAB-5154:Rev-in-nef Residue 2 Input

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E-MTAB-5154:Rev-in-nef Residue 3 Input

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E-MTAB-5154:Rev-in-nef Residue 4 Input

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E-MTAB-5154:Rev-in-nef Residue 5 Input

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E-MTAB-5154:Rev-in-nef Residue 6 Input

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E-MTAB-5154:Rev-in-nef Residue 7 Input

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E-MTAB-5154:Rev-in-nef Residue 8 Input

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E-MTAB-5154:Rev-in-nef Residue 9 Input

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E-MTAB-5154:Rev-in-nef Residue 10 Input

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E-MTAB-5154:Rev-in-nef Residue 11 Input

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E-MTAB-5154:Rev-in-nef Residue 12 Input

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E-MTAB-5154:Rev-in-nef Residue 13 Input

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text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 13 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 14 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 14 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 14 Input


name: E-MTAB-5154:Rev-in-nef Residue 14 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 14 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 14 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 14 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 15 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 15 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 15 Input


name: E-MTAB-5154:Rev-in-nef Residue 15 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 15 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 15 Replicate 2

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 15 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 16 Input

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 16 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 16 Input


name: E-MTAB-5154:Rev-in-nef Residue 16 Replicate 1

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 16 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 16 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 16 Replicate 2

characteristic: title


E-MTAB-5154:Rev-in-nef Residue 17 Input

characteristic: External Id

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 17 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 17 Input


name: E-MTAB-5154:Rev-in-nef Residue 17 Replicate 1

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 17 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 17 Replicate 2

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 17 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 18 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 18 Input

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 18 Input


name: E-MTAB-5154:Rev-in-nef Residue 18 Replicate 1

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 18 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 18 Replicate 2

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 18 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 19 Input

text: UCSF

text: public

characteristic: SRA accession

text: E-MTAB-5154:Rev-in-nef Residue 19 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 19 Input


name: E-MTAB-5154:Rev-in-nef Residue 19 Replicate 1

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 19 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 19 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 19 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 20 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 20 Input

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 20 Input


name: E-MTAB-5154:Rev-in-nef Residue 20 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 20 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 20 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 20 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 21 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 21 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 21 Input


name: E-MTAB-5154:Rev-in-nef Residue 21 Replicate 1

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 21 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 21 Replicate 2

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 21 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 22 Input

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 22 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 22 Input


name: E-MTAB-5154:Rev-in-nef Residue 22 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 22 Replicate 1

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 22 Replicate 2

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 22 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 23 Input

text: UCSF

characteristic: INSDC center name

text: public

text: E-MTAB-5154:Rev-in-nef Residue 23 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 23 Input


name: E-MTAB-5154:Rev-in-nef Residue 23 Replicate 1

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 23 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 23 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 23 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 24 Input

text: UCSF

characteristic: INSDC last update

text: public

text: E-MTAB-5154:Rev-in-nef Residue 24 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 24 Input


name: E-MTAB-5154:Rev-in-nef Residue 24 Replicate 1

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 24 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 24 Replicate 2

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 24 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 25 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 25 Input

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 25 Input


name: E-MTAB-5154:Rev-in-nef Residue 25 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 25 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 25 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 25 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 26 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 26 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 26 Input


name: E-MTAB-5154:Rev-in-nef Residue 26 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 26 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 26 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 26 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 27 Input

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 27 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 27 Input


name: E-MTAB-5154:Rev-in-nef Residue 27 Replicate 1

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 27 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 27 Replicate 2

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 27 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 28 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 28 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 28 Input

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 28 Replicate 1

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 28 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 28 Replicate 2

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 28 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 29 Input

text: UCSF

characteristic: INSDC first public

text: public

text: E-MTAB-5154:Rev-in-nef Residue 29 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 29 Input


name: E-MTAB-5154:Rev-in-nef Residue 29 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 29 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 29 Replicate 2

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 29 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 30 Input

text: UCSF

text: public

characteristic: INSDC status

text: E-MTAB-5154:Rev-in-nef Residue 30 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 30 Input


name: E-MTAB-5154:Rev-in-nef Residue 30 Replicate 1

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 30 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 30 Replicate 2

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 30 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 31 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 31 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 31 Input


name: E-MTAB-5154:Rev-in-nef Residue 31 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 31 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 31 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 31 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 32 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 32 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 32 Input


name: E-MTAB-5154:Rev-in-nef Residue 32 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 32 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 32 Replicate 2

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 32 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 33 Input

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 33 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 33 Input


name: E-MTAB-5154:Rev-in-nef Residue 33 Replicate 1

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 33 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 33 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 33 Replicate 2

characteristic: title


E-MTAB-5154:Rev-in-nef Residue 34 Input

characteristic: External Id

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 34 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 34 Input


name: E-MTAB-5154:Rev-in-nef Residue 34 Replicate 1

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 34 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 34 Replicate 2

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 34 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 35 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 35 Input

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 35 Input


name: E-MTAB-5154:Rev-in-nef Residue 35 Replicate 1

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 35 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 35 Replicate 2

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 35 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 36 Input

text: UCSF

text: public

characteristic: SRA accession

text: E-MTAB-5154:Rev-in-nef Residue 36 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 36 Input


name: E-MTAB-5154:Rev-in-nef Residue 36 Replicate 1

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 36 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 36 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 36 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 37 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 37 Input

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 37 Input


name: E-MTAB-5154:Rev-in-nef Residue 37 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 37 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 37 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 37 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 38 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 38 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 38 Input


name: E-MTAB-5154:Rev-in-nef Residue 38 Replicate 1

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 38 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 38 Replicate 2

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 38 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 39 Input

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 39 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 39 Input


name: E-MTAB-5154:Rev-in-nef Residue 39 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 39 Replicate 1

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 39 Replicate 2

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 39 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 40 Input

text: UCSF

characteristic: INSDC center name

text: public

text: E-MTAB-5154:Rev-in-nef Residue 40 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 40 Input


name: E-MTAB-5154:Rev-in-nef Residue 40 Replicate 1

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 40 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 40 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 40 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 41 Input

text: UCSF

characteristic: INSDC last update

text: public

text: E-MTAB-5154:Rev-in-nef Residue 41 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 41 Input


name: E-MTAB-5154:Rev-in-nef Residue 41 Replicate 1

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 41 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 41 Replicate 2

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 41 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 42 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 42 Input

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 42 Input


name: E-MTAB-5154:Rev-in-nef Residue 42 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 42 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 42 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 42 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 43 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 43 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 43 Input


name: E-MTAB-5154:Rev-in-nef Residue 43 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 43 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 43 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 43 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 44 Input

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 44 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 44 Input


name: E-MTAB-5154:Rev-in-nef Residue 44 Replicate 1

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 44 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 44 Replicate 2

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 44 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 45 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 45 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 45 Input

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 45 Replicate 1

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 45 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 45 Replicate 2

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 45 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 46 Input

text: UCSF

characteristic: INSDC first public

text: public

text: E-MTAB-5154:Rev-in-nef Residue 46 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 46 Input


name: E-MTAB-5154:Rev-in-nef Residue 46 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 46 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 46 Replicate 2

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 46 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 47 Input

text: UCSF

text: public

characteristic: INSDC status

text: E-MTAB-5154:Rev-in-nef Residue 47 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 47 Input


name: E-MTAB-5154:Rev-in-nef Residue 47 Replicate 1

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 47 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 47 Replicate 2

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 47 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 48 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 48 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 48 Input


name: E-MTAB-5154:Rev-in-nef Residue 48 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 48 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 48 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 48 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 49 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 49 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 49 Input


name: E-MTAB-5154:Rev-in-nef Residue 49 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 49 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 49 Replicate 2

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 49 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 50 Input

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 50 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 50 Input


name: E-MTAB-5154:Rev-in-nef Residue 50 Replicate 1

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 50 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 50 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 50 Replicate 2

characteristic: title


E-MTAB-5154:Rev-in-nef Residue 51 Input

characteristic: External Id

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 51 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 51 Input


name: E-MTAB-5154:Rev-in-nef Residue 51 Replicate 1

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 51 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 51 Replicate 2

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 51 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 52 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 52 Input

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 52 Input


name: E-MTAB-5154:Rev-in-nef Residue 52 Replicate 1

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 52 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 52 Replicate 2

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 52 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 53 Input

text: UCSF

text: public

characteristic: SRA accession

text: E-MTAB-5154:Rev-in-nef Residue 53 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 53 Input


name: E-MTAB-5154:Rev-in-nef Residue 53 Replicate 1

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 53 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 53 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 53 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 54 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 54 Input

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 54 Input


name: E-MTAB-5154:Rev-in-nef Residue 54 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 54 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 54 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 54 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 55 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 55 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 55 Input


name: E-MTAB-5154:Rev-in-nef Residue 55 Replicate 1

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 55 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 55 Replicate 2

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 55 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 56 Input

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 56 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 56 Input


name: E-MTAB-5154:Rev-in-nef Residue 56 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 56 Replicate 1

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 56 Replicate 2

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 56 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 57 Input

text: UCSF

characteristic: INSDC center name

text: public

text: E-MTAB-5154:Rev-in-nef Residue 57 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 57 Input


name: E-MTAB-5154:Rev-in-nef Residue 57 Replicate 1

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 57 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 57 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 57 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 58 Input

text: UCSF

characteristic: INSDC last update

text: public

text: E-MTAB-5154:Rev-in-nef Residue 58 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 58 Input


name: E-MTAB-5154:Rev-in-nef Residue 58 Replicate 1

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 58 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 58 Replicate 2

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 58 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 59 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 59 Input

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 59 Input


name: E-MTAB-5154:Rev-in-nef Residue 59 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 59 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 59 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 59 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 60 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 60 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 60 Input


name: E-MTAB-5154:Rev-in-nef Residue 60 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 60 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 60 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 60 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 61 Input

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 61 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 61 Input


name: E-MTAB-5154:Rev-in-nef Residue 61 Replicate 1

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 61 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 61 Replicate 2

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 61 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 62 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 62 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 62 Input

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 62 Replicate 1

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 62 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 62 Replicate 2

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 62 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 63 Input

text: UCSF

characteristic: INSDC first public

text: public

text: E-MTAB-5154:Rev-in-nef Residue 63 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 63 Input


name: E-MTAB-5154:Rev-in-nef Residue 63 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 63 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 63 Replicate 2

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 63 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 64 Input

text: UCSF

text: public

characteristic: INSDC status

text: E-MTAB-5154:Rev-in-nef Residue 64 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 64 Input


name: E-MTAB-5154:Rev-in-nef Residue 64 Replicate 1

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 64 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 64 Replicate 2

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 64 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 65 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 65 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 65 Input


name: E-MTAB-5154:Rev-in-nef Residue 65 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 65 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 65 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 65 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 66 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 66 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 66 Input


name: E-MTAB-5154:Rev-in-nef Residue 66 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 66 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 66 Replicate 2

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 66 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 67 Input

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 67 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 67 Input


name: E-MTAB-5154:Rev-in-nef Residue 67 Replicate 1

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 67 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 67 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 67 Replicate 2

characteristic: title


E-MTAB-5154:Rev-in-nef Residue 68 Input

characteristic: External Id

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 68 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 68 Input


name: E-MTAB-5154:Rev-in-nef Residue 68 Replicate 1

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 68 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 68 Replicate 2

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 68 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 69 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 69 Input

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 69 Input


name: E-MTAB-5154:Rev-in-nef Residue 69 Replicate 1

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 69 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 69 Replicate 2

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 69 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 70 Input

text: UCSF

text: public

characteristic: SRA accession

text: E-MTAB-5154:Rev-in-nef Residue 70 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 70 Input


name: E-MTAB-5154:Rev-in-nef Residue 70 Replicate 1

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 70 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 70 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 70 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 71 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 71 Input

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 71 Input


name: E-MTAB-5154:Rev-in-nef Residue 71 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 71 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 71 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 71 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 72 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 72 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 72 Input


name: E-MTAB-5154:Rev-in-nef Residue 72 Replicate 1

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 72 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 72 Replicate 2

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 72 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 73 Input

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 73 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 73 Input


name: E-MTAB-5154:Rev-in-nef Residue 73 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 73 Replicate 1

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 73 Replicate 2

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 73 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 74 Input

text: UCSF

characteristic: INSDC center name

text: public

text: E-MTAB-5154:Rev-in-nef Residue 74 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 74 Input


name: E-MTAB-5154:Rev-in-nef Residue 74 Replicate 1

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 74 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 74 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 74 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 75 Input

text: UCSF

characteristic: INSDC last update

text: public

text: E-MTAB-5154:Rev-in-nef Residue 75 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 75 Input


name: E-MTAB-5154:Rev-in-nef Residue 75 Replicate 1

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 75 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 75 Replicate 2

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 75 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 76 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 76 Input

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 76 Input


name: E-MTAB-5154:Rev-in-nef Residue 76 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 76 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 76 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 76 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 77 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 77 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 77 Input


name: E-MTAB-5154:Rev-in-nef Residue 77 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 77 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 77 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 77 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 78 Input

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 78 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 78 Input


name: E-MTAB-5154:Rev-in-nef Residue 78 Replicate 1

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 78 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 78 Replicate 2

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 78 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 79 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 79 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 79 Input

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 79 Replicate 1

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 79 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 79 Replicate 2

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 79 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 80 Input

text: UCSF

characteristic: INSDC first public

text: public

text: E-MTAB-5154:Rev-in-nef Residue 80 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 80 Input


name: E-MTAB-5154:Rev-in-nef Residue 80 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 80 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 80 Replicate 2

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 80 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 81 Input

text: UCSF

text: public

characteristic: INSDC status

text: E-MTAB-5154:Rev-in-nef Residue 81 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 81 Input


name: E-MTAB-5154:Rev-in-nef Residue 81 Replicate 1

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 81 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 81 Replicate 2

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 81 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 82 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 82 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 82 Input


name: E-MTAB-5154:Rev-in-nef Residue 82 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 82 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 82 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 82 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 83 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 83 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 83 Input


name: E-MTAB-5154:Rev-in-nef Residue 83 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 83 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 83 Replicate 2

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 83 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 84 Input

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 84 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 84 Input


name: E-MTAB-5154:Rev-in-nef Residue 84 Replicate 1

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 84 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 84 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 84 Replicate 2

characteristic: title


E-MTAB-5154:Rev-in-nef Residue 85 Input

characteristic: External Id

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 85 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 85 Input


name: E-MTAB-5154:Rev-in-nef Residue 85 Replicate 1

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 85 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 85 Replicate 2

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 85 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 86 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 86 Input

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 86 Input


name: E-MTAB-5154:Rev-in-nef Residue 86 Replicate 1

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 86 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 86 Replicate 2

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 86 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 87 Input

text: UCSF

text: public

characteristic: SRA accession

text: E-MTAB-5154:Rev-in-nef Residue 87 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 87 Input


name: E-MTAB-5154:Rev-in-nef Residue 87 Replicate 1

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 87 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 87 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 87 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 88 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 88 Input

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 88 Input


name: E-MTAB-5154:Rev-in-nef Residue 88 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 88 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 88 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 88 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 89 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 89 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 89 Input


name: E-MTAB-5154:Rev-in-nef Residue 89 Replicate 1

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 89 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 89 Replicate 2

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 89 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 90 Input

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 90 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 90 Input


name: E-MTAB-5154:Rev-in-nef Residue 90 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 90 Replicate 1

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 90 Replicate 2

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 90 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 91 Input

text: UCSF

characteristic: INSDC center name

text: public

text: E-MTAB-5154:Rev-in-nef Residue 91 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 91 Input


name: E-MTAB-5154:Rev-in-nef Residue 91 Replicate 1

text: UCSF

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 91 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 91 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 91 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 92 Input

text: UCSF

characteristic: INSDC last update

text: public

text: E-MTAB-5154:Rev-in-nef Residue 92 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 92 Input


name: E-MTAB-5154:Rev-in-nef Residue 92 Replicate 1

text: UCSF

text: public

characteristic: INSDC status

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 92 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 92 Replicate 2

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 92 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 93 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 93 Input

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 93 Input


name: E-MTAB-5154:Rev-in-nef Residue 93 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

characteristic: organism

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 93 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 93 Replicate 2

text: UCSF

text: public

text: ArrayExpress

characteristic: broker name

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 93 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 94 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 94 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

characteristic: point mutation status

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 94 Input


name: E-MTAB-5154:Rev-in-nef Residue 94 Replicate 1

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: protein mutated

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 94 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 94 Replicate 2

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

characteristic: randomized position

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 94 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 95 Input

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 95 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 95 Input


name: E-MTAB-5154:Rev-in-nef Residue 95 Replicate 1

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 95 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 95 Replicate 2

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 95 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 96 Input

text: UCSF

text: public

text: E-MTAB-5154:Rev-in-nef Residue 96 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 96 Input

characteristic: title


name: E-MTAB-5154:Rev-in-nef Residue 96 Replicate 1

characteristic: External Id

text: UCSF

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 96 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 96 Replicate 2

text: UCSF

characteristic: INSDC center name

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 96 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 97 Input

text: UCSF

characteristic: INSDC first public

text: public

text: E-MTAB-5154:Rev-in-nef Residue 97 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 97 Input


name: E-MTAB-5154:Rev-in-nef Residue 97 Replicate 1

text: UCSF

text: public

text: ArrayExpress

characteristic: description

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 97 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 97 Replicate 2

text: UCSF

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 97 Replicate 2


E-MTAB-5154:Rev-in-nef Residue 98 Input

text: UCSF

text: public

characteristic: INSDC status

text: E-MTAB-5154:Rev-in-nef Residue 98 Input

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: before mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 98 Input


name: E-MTAB-5154:Rev-in-nef Residue 98 Replicate 1

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 98 Replicate 1


name: E-MTAB-5154:Rev-in-nef Residue 98 Replicate 2

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HIV-1 vector pNL4-3

text: HIV-1 vector pNL4-3

text: after mutation

text: rev

text: HIV-1 vector pNL4-3

text: Rev-in-nef Residue 98 Replicate 2