characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: chla

text: 05/08/14 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 05/08/14 12:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: chla

text: 06/05/14 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC center name

text: public

text: 06/05/14 12:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: chla

text: 07/04/14 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 07/04/14 12:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 02/10/14 10:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: River

characteristic: env biome

text: Riverine water

characteristic: env feature

text: Freshwater spring

characteristic: env matter

text: water

characteristic: env package

text: freshwater metagenome

characteristic: oxygen

text: False

text: False

text: water

text: NER

text: freshwater metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC center name

text: public

text: 06/08/14 10:00

text: True

text: EMP

text: River

text: Riverine water

text: Freshwater spring

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: freshwater metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

text: NER

characteristic: sampletype

text: freshwater metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 09/04/14 10:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: River

characteristic: env biome

text: Riverine water

characteristic: env feature

text: Freshwater spring

characteristic: env matter

text: water

characteristic: env package

text: freshwater metagenome

characteristic: oxygen

text: False

text: False

text: water

text: NER

text: freshwater metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: chla

text: 01/10/14 10:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 24/02/14 10:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 26/12/13 10:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 26/09/13 10:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 28/11/13 10:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 29/10/13 10:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 29/08/13 10:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 03/06/13 10:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 04/07/14 10:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 04/08/14 10:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 05/06/14 10:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 07/02/14 10:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 07/05/14 10:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 08/04/14 10:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 01/10/14 11:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 02/09/14 11:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 24/02/14 11:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 26/12/13 11:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 26/09/13 11:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 28/11/13 11:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 29/10/13 11:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 29/08/13 11:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 03/06/13 11:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 04/07/14 11:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 04/08/14 11:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 05/06/14 11:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 07/02/14 11:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 07/05/14 11:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 08/04/14 11:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 01/10/14 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 02/09/14 12:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 24/02/14 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 24/02/14 12:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 26/12/13 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 26/09/13 12:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 28/11/13 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 29/10/13 12:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 29/08/13 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 03/06/13 12:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 04/07/14 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 04/08/14 12:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 05/06/14 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 07/02/14 12:00

text: True

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 07/05/14 12:00

characteristic: depth

characteristic: description

text: True

characteristic: elevation

text: EMP

characteristic: emp status

text: Estuary

characteristic: env biome

text: Estuarine water

characteristic: env feature

text: Brackish water

characteristic: env matter

text: water

characteristic: env package

text: estuary metagenome

characteristic: oxygen

text: False

text: False

text: water

text: estuary metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: chla

text: 08/04/14 12:00

text: True

text: EMP

text: Estuary

text: Estuarine water

text: Brackish water

text: water

characteristic: geo loc name

characteristic: host subject id

characteristic: julianday

characteristic: latitude

characteristic: longitude

text: estuary metagenome

characteristic: organism

characteristic: ph

text: False

characteristic: precipitation

text: False

characteristic: public

characteristic: run number

characteristic: salinity

text: water

characteristic: sample type

characteristic: sampletype

text: estuary metagenome

characteristic: secchim

characteristic: temp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

characteristic: Submitter Id

characteristic: collection date

text: biogas reactor (CSTR, grass silage and cow manure)

characteristic: environment (biome)

text: anoxid, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: Coumarin inhibition

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

text: Inhibition of aceto- and methanogenesis by coumarin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: anoxid, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: metagenome

text: uncultured microorganism

characteristic: organism

text: Coumarin inhibition

text: uncultured microorganism

text: pyrosequencing


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: anoxid, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

text: Germany

text: metagenome

text: uncultured bacterium

text: Coumarin inhibition

text: uncultured bacterium

text: pyrosequencing


text: public

tag: Namespace:Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University

text: Seed sample for the enrichment reactor.

characteristic: description

text: wastewater metagenome

text: wastewater metagenome

text: Holmes metagenome


text: Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University

text: public

text: Reactor sample from 2013-11-05

text: wastewater metagenome

text: wastewater metagenome

text: Holmes metagenome


text: public

text: Reactor sample from 2013-11-25. The main experiments were prepared at this date.

text: wastewater metagenome

text: wastewater metagenome

text: Holmes metagenome


text: public

text: Reactor sample from 2013-12-13.

text: wastewater metagenome

text: wastewater metagenome

text: Holmes metagenome


text: public

text: Reactor sample from 2013-12-19.

text: wastewater metagenome

text: wastewater metagenome

text: Holmes metagenome


text: public

tag: Namespace:Institute of Medical Microbiology and Hospital Epidemiology

text: Recombinant clones of 26695 generated by single and multiple in vitro transformation events

text: Helicobacter pylori

text: Helicobacter pylori

text: Contig assembly of recombinant clones of Helicobacter pylori str. 26695


text: Institute of Medical Microbiology and Hospital Epidemiology

text: public

text: Helicobacter pylori

text: Helicobacter pylori


text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CEA Saclay

text: public

tag: Namespace:CEA Saclay

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: Protocols: All strains were grown in YPD rich medium at 30°C to 0.6 OD600, then shifted at 37°C for 90min The cell pellets are resuspended in 1 ml of FA/SDS/PMSF buffer (50 mM HEPES-KOH, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% Triton X100, 0.1% sodium deoxycholate, 0.1% SDS, 1 mM PMSF) and transferred to 1.5 mL Eppendorf tubes. 0.75 mL glass beads (425-600 μm, Sigma) are then added to each tube, and the yeast cells were lysed at 4°C for 15 min by vortexing. Pierce the bottom of a 12 ml Greiner tube with a hot needle (0.7x30 mm or 0.5x15 mm) and place in a Falcon50 with a pierced cap. The lysates are transfered in the pierced tubes. Wash each Epp with twice 1 ml of FA/SDS/PMSF buffer (4 ml per extract). Spin down 1 min/2000 rpm. Gently resuspend the pellet with a 5 ml pipet and transfer in a sterile 15 ml Corex tube. Spin down 20 min / 12000 rpm / 4°C in a JA17 rotor (Beckmann). Vacuum the supernatant. The cross-linked chromatin appears as a transparent layer around the pellet. Transfer the pellet in a 2 ml Epp with a burned Pasteur pipet. Add 0.8 ml of FA/SDS/PMSF buffer in the Corex and resuspend with the Pasteur pipet. Transfer in the Epp. Wash the Corex with 0.8 ml FA/SDS/PMSF buffer. Homogenize the Epp with the Pasteur pipet and incubate on a rotating wheal at 4°C for 1 to 2 hours.Spin down 20 min / 12000 rpm / 4°C. Vacuum the supernatant and resuspend in 1.6 ml FA/SDS/PMSF buffer with a burned Pasteur pipet.Place the tubes in a mix water / ice / NaCl. Sonicator settings: Pulse - 60% - Power 4. Sonicate 3 times 40 sec with 20 sec intervals. Split in 800μl aliquots and performe an additional sonication step with Bioruptor (Diagenode), 6 cycles of 40s with medium intensity setting. Average size of fragments obtained is 200bp.Transfer in a 12 ml Greiner tube and add 0.5 ml FA/SDS/PMSF buffer. Incubate on a rotating wheal for 30 min to 1 hour at 4°C. Spin down 30 min / 10000 rpm / 4°C on a JA20 rotor (Beckmann).Transfer the supernatant in a new tube. Aliquot the supernatant (the chromatin is now soluble). Aliquots of 650 μl and freeze in liquid nitrogen.Chromatin fragment control: Take an aliquot of 100 μl of chromatin and add 25 μl Pronase buffer 5X and 6.25 μl of Pronase (20 mg/ml in H20). Incubate 1 hour at 37 °C and O/N at 65 °C (digestproteins and reverse crosslink). Add 3.5 μl of RNaseA 1mg/ml and incubate 1 hour at 37 °C. Purify on a Quiagen PCR purification column (Elute wih 50 μl Tris 10 mM pH8.5). Load on gel (1.5% in TAE -100V).Immunoprecipitation:Wash 50 μl of Dynabeads Ig 4 times with 500 μl PBS BSA 0.1% buffer. Resuspend in 100 μl PBS BSA 0.1 % buffer. Add antibody (5μl 8WG16 or 1μL 12CA5 or any for TAp tagged strains). Incubate 30 min at 1300 rpm in an Eppendorf shaker at 30 °C. Wash 2X 500 μl PBS BSA 0.1%. Wash 1X 500 μl PBS BSA 0.1% with shaking 10 min at 1300 rpm / 30 °C. Wash 1X 500 μl PBS BSA 0.1%.Spin down the chromatin from the -80°C for 15 min / 12000 rpm / 4 °C. Add 50 μl of PBS BSA 10mg/ml to the beads and then 500 μl of chromatin.Incubate 2h at 21 °C in an Eppendorf shaker (1300 rpm). Resuspend with 500 μl FA/SDS and change tube. Wash 2X 1 ml FA/SDS + NaCl (final concentration 500 mM). Wash 1X 1 ml FA/SDS + NaCl with shaking 10 min at 1300 rpm / 21 °C. Wash 1X with 500 μl IP buffer (Tris pH7.5 125 mM, EDTA 25 mM, SDS 2.5%). Wash 1X with 500 μl TE. Elute with 125 μl Pronase Buffer 1X for 20 min at 65 °C in an Eppendorf shaker at 600 rpm. Cool down at RT. Add 6.25 μl Pronase to the supernatant. Incubate 1h at 37 °C and O/N at 65 °C. Add 25 μl of Pronase buffer 5X and 6.25 μl of Pronase to 100 μl of chromatin remaining from the initial tube (total DNA).Incubate 1h at 37 °C and O/N at 65 °C. Add 3.5 μl RNAseA (1mg/ml) and incubate 1h at 37 °C. Purify DNA on a Qiagen PCR purification column. Illumina TruSeq ChIP Library Prep Kit

text: tagging

characteristic: genetic modification

text: MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TAF1::3HA::HIS3 med10::KanMX6 // med10-196 CEN TRP1

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEA Saclay

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: baker's yeast

text: tagging

text: MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TAF1::3HA::HIS3 med10::KanMX6 // MED10 CEN TRP1

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


HeLa WT BLV

text: GIGA-R, University of Liege

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HeLa WT BLV

tag: Namespace:GIGA-R, University of Liege

characteristic: Submitter Id

text: HeLa cell line transfected with a wild type BLV provirus, followed by 3’RACE to amplify near full length cDNA from the BLV antisense transcripts.

text: Bovine leukemia virus

text: Bovine leukemia virus

text: HeLa transfected WT BLV


HeLa DEL BLV

text: GIGA-R, University of Liege

text: public

text: HeLa DEL BLV

text: HeLa cell line transfected with a BLV provirus where the BLV microRNAs were removed, followed by 3’RACE to amplify near full length cDNA from the BLV antisense transcripts.

characteristic: description

text: Bovine leukemia virus

text: Bovine leukemia virus

text: HeLa transfected Del miR BLV


HeLa INV BLV

text: GIGA-R, University of Liege

text: public

text: HeLa INV BLV

text: HeLa cell line transfected with a BLV provirus where the BLV microRNAs were inverted in orientation, followed by 3’RACE to amplify near full length cDNA from the BLV antisense transcripts.

text: Bovine leukemia virus

text: Bovine leukemia virus

text: HeLa transfected INV miR BLV


E. coli-R4b

text: Virginia Commonwealth University

text: public

text: E. coli-R4b

text: Escherichia coli K-12

characteristic: reference URL

characteristic: reference id

text: Escherichia coli K-12


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VRIJE UNIVERSITEIT BRUSSEL

text: public

tag: Namespace:VRIJE UNIVERSITEIT BRUSSEL

characteristic: collection date

text: coffee

characteristic: environment (biome)

text: processing

characteristic: environment (feature)

text: surface

characteristic: environment (material)

text: Ecuador

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: fermentation metagenome

characteristic: project name

text: fermentation metagenome

text: Illumina

characteristic: sequencing method

text: coffee


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lab of microbiology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Lab of microbiology

characteristic: Submitter Id

unit: m

characteristic: depth

text: hypersaline lake

text: hypersaline lake

text: sediment

text: Australia

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: BE-Basic-FES

text: uncultured bacterium

text: sediment

characteristic: sediment environmental package

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VRIJE UNIVERSITEIT BRUSSEL

text: public

characteristic: collection date

text: coffee

characteristic: environment (biome)

text: processing

characteristic: environment (feature)

text: surface

characteristic: environment (material)

text: Ecuador

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: fermentation metagenome

text: fermentation metagenome

text: Illumina

text: coffee processing


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIBE-IG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: dog

characteristic: common name

text: Canis lupus familiaris

text: Canis lupus familiaris

text: A splice defect in the EDA gene in dogs with an X-linked ectodermal dysplasia


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

characteristic: Submitter Id

text: 4 week

characteristic: age

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

characteristic: experimental factor 1

text: infect

characteristic: experimental factor 2

text: time

characteristic: experimental factor 3

text: pen2-1, pad4-1, sag101-2 triple mutant

characteristic: genotype

text: Blumeria graminis f. sp. hordei isolate K1

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: leaf (EFO_0000993)

characteristic: organism part

characteristic: recurated from

text: Arabidopsis thaliana

text: 6 hour

characteristic: time

text: ENA Crop Plant sample enhanced annotation

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 4 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: infect

text: time

text: pen2-1, pad4-1, sag101-2 triple mutant

text: Blumeria graminis f. sp. hordei isolate A6

text: Arabidopsis thaliana

text: leaf (EFO_0000993)

text: Arabidopsis thaliana

text: 6 hour


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

characteristic: Submitter Id

text: 4 week

characteristic: age

text: thale cress

characteristic: common name

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

characteristic: experimental factor 1

text: infect

text: time

text: pen2-1, pad4-1, sag101-2 triple mutant

text: Arabidopsis thaliana

text: leaf (EFO_0000993)

text: Arabidopsis thaliana

text: 12 hour


text: ENA

text: public

text: 4 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: infect

characteristic: experimental factor 2

text: time

characteristic: experimental factor 3

text: pen2-1, pad4-1, sag101-2 triple mutant

characteristic: genotype

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: leaf (EFO_0000993)

characteristic: organism part

characteristic: recurated from

text: Arabidopsis thaliana

text: 12 hour


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 4 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: infect

text: time

text: pen2-1, pad4-1, sag101-2 triple mutant

text: Arabidopsis thaliana

text: leaf (EFO_0000993)

text: Arabidopsis thaliana

text: 18 hour

characteristic: time

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 4 week

characteristic: age

text: thale cress

characteristic: common name

text: Col-0 (EFO_0005148)

text: genotype

text: infect

text: time

text: pen2-1, pad4-1, sag101-2 triple mutant

text: Arabidopsis thaliana

text: leaf (EFO_0000993)

text: Arabidopsis thaliana

text: 18 hour


text: ENA

text: public

text: 4 week

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

characteristic: experimental factor 1

text: infect

characteristic: experimental factor 2

text: time

characteristic: experimental factor 3

text: pen2-1, pad4-1, sag101-2 triple mutant

characteristic: genotype

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: leaf (EFO_0000993)

text: Arabidopsis thaliana

text: 24 hour


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 4 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: infect

text: time

text: pen2-1, pad4-1, sag101-2 triple mutant

text: Arabidopsis thaliana

text: leaf (EFO_0000993)

characteristic: organism part

characteristic: recurated from

text: Arabidopsis thaliana

text: 24 hour


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Japanese rice

text: Nipponbare (EFO_0007587)

characteristic: cultivar

text: organism part

text: Oryza sativa Japonica Group

text: coleoptile, root, shoot, and leaf

text: Oryza sativa Japonica Group

characteristic: title


text: ENA

text: public

text: Japanese rice

characteristic: common name

text: Nipponbare (EFO_0007587)

text: organism part

characteristic: experimental factor 1

text: Oryza sativa Japonica Group

text: anther, pistil and plant embryo

text: Oryza sativa Japonica Group


text: ENA

text: public

text: 5 week

characteristic: age

text: water

characteristic: chemical compound

text: thale cress

text: 0 micromolar

characteristic: dose

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: chemical compound

text: dose

characteristic: experimental factor 2

text: protocol

characteristic: experimental factor 3

text: Arabidopsis thaliana

characteristic: organism

text: leaf (EFO_0000993)

text: RNA-seq of coding RNA (EFO_0003738)

characteristic: protocol

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 5 week

text: flagellin peptide flg22

text: thale cress

text: 1 micromolar

text: Col-0 (EFO_0005148)

text: chemical compound

text: dose

text: protocol

text: Arabidopsis thaliana

text: leaf (EFO_0000993)

characteristic: organism part

text: RNA-seq of coding RNA (EFO_0003738)

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 6 week

text: none (EFO_0001461)

text: thale cress

characteristic: common name

text: 0 micromolar

text: Col-0 (EFO_0005148)

text: chemical compound

characteristic: experimental factor 1

text: dose

text: protocol

text: Arabidopsis thaliana

text: leaf (EFO_0000993)

text: RNA-seq of non coding RNA (EFO_0003737)

text: Arabidopsis thaliana

characteristic: title


text: ENA

text: public

text: B73 inbred line (EFO_0007022)

characteristic: cultivar

text: whole plant flowering stage

characteristic: dev stage

text: none (EFO_0001461)

characteristic: environmental stress

text: environmental stress

text: organism part

characteristic: experimental factor 2

text: Zea mays

characteristic: organism

text: plant ovary (EFO_0001052)

text: Zea mays


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

text: public

text: B73 inbred line (EFO_0007022)

text: whole plant flowering stage

text: drought environment

text: environmental stress

text: organism part

text: Zea mays

text: plant ovary (EFO_0001052)

text: Zea mays


text: ENA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: B73 inbred line (EFO_0007022)

text: whole plant flowering stage

text: none (EFO_0001461)

text: environmental stress

text: organism part

text: Zea mays

text: leaf meristem

characteristic: organism part

characteristic: recurated from

text: Zea mays


characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: B73 inbred line (EFO_0007022)

text: whole plant flowering stage

text: drought environment

text: environmental stress

text: organism part

text: Zea mays

text: leaf meristem

text: Zea mays


text: ENA

text: public

text: thale cress

characteristic: common name

text: flower development stage

text: Columbia (EFO_0005147)

characteristic: ecotype

text: sample type

characteristic: experimental factor 1

text: transgene

text: pMDC99-AGO1:HA-AGO1-DDH transgenic line

characteristic: genotype

text: Arabidopsis thaliana

text: flower (EFO_0001024)

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

text: ENA

text: public

text: thale cress

text: flower development stage

characteristic: dev stage

text: Columbia (EFO_0005147)

text: sample type

text: transgene

characteristic: experimental factor 2

text: pMDC99-AGO1:HA-AGO1-DAH transgenic line

text: Arabidopsis thaliana

characteristic: organism

text: flower (EFO_0001024)

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 4 week

characteristic: age

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: none (EFO_0001461)

characteristic: genetic modification

text: wild type genotype

text: Arabidopsis thaliana

text: aerial part (EFO_0001901)

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 4 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: transgenic (EFO_0004020)

text: SlHsfA3-overexpressing line

text: Arabidopsis thaliana

text: aerial part (EFO_0001901)

characteristic: organism part

characteristic: recurated from

text: Arabidopsis thaliana


text: ENA

text: public

characteristic: Submitter Id

text: 4 week

text: thale cress

characteristic: common name

text: seedling

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

characteristic: experimental factor 1

text: none (EFO_0001461)

text: wild-type

characteristic: genotype

text: Arabidopsis thaliana

text: aerial part (EFO_0001901)

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

text: public

text: 4 week

text: thale cress

text: seedling

characteristic: dev stage

text: Col-0 (EFO_0005148)

text: genotype

text: transgenic (EFO_0004020)

text: 35Spro:SsCBF1 overexpressing line

text: Arabidopsis thaliana

characteristic: organism

text: aerial part (EFO_0001901)

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 8 day

characteristic: age

text: Huangzao4 inbred line

characteristic: cultivar

text: seedling

text: control (EFO_0001461)

characteristic: disease staging

text: cultivar

text: disease staging

characteristic: experimental factor 2

text: infect

characteristic: experimental factor 3

text: none (EFO_0001461)

characteristic: infect

text: Zea mays

text: radicle (EFO_0001019)

text: susceptible to head smut

characteristic: phenotype

text: Zea mays


text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 8 day

text: Huangzao4 inbred line

text: seedling

text: no hyphal existence

text: cultivar

characteristic: experimental factor 1

text: disease staging

text: infect

text: Sporisorium reilianum f. sp. zeae

text: Zea mays

text: radicle (EFO_0001019)

characteristic: organism part

text: susceptible to head smut

characteristic: recurated from

text: Zea mays


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

text: public

text: 8 day

text: Huangzao4 inbred line

text: seedling

characteristic: dev stage

text: hyphal existence

text: cultivar

text: disease staging

text: infect

text: Sporisorium reilianum f. sp. zeae

text: Zea mays

characteristic: organism

text: radicle (EFO_0001019)

text: susceptible to head smut

text: Zea mays

characteristic: title


text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 8 day

characteristic: age

text: Mo17 inbred line

characteristic: cultivar

text: seedling

text: control (EFO_0001461)

characteristic: disease staging

text: cultivar

text: disease staging

characteristic: experimental factor 2

text: infect

characteristic: experimental factor 3

text: none (EFO_0001461)

text: Zea mays

text: radicle (EFO_0001019)

text: resistant to head smut

text: Zea mays


text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 8 day

text: Mo17 inbred line

text: seedling

text: no hyphal existence

text: cultivar

characteristic: experimental factor 1

text: disease staging

text: infect

text: Sporisorium reilianum f. sp. zeae

characteristic: infect

text: Zea mays

text: radicle (EFO_0001019)

text: resistant to head smut

characteristic: phenotype

text: Zea mays


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

text: public

text: 8 day

text: Mo17 inbred line

text: seedling

characteristic: dev stage

text: hyphal existence

text: cultivar

text: disease staging

text: infect

text: Sporisorium reilianum f. sp. zeae

text: Zea mays

text: radicle (EFO_0001019)

characteristic: organism part

text: resistant to head smut

characteristic: recurated from

text: Zea mays


text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 7 day

characteristic: age

text: Japanese rice

characteristic: common name

text: Dongjin

characteristic: cultivar

text: seedling

text: genotype

text: protocol

text: none (EFO_0001461)

characteristic: genetic modification

text: wild type genotype

characteristic: genotype

text: Oryza sativa Japonica Group

characteristic: organism

text: whole organism (EFO_0002906)

text: ChIP-seq (EFO_0002692)

characteristic: protocol

text: Oryza sativa Japonica Group

characteristic: title


characteristic: ENA-CHECKLIST

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 7 day

text: Japanese rice

text: Dongjin

text: seedling

text: genotype

characteristic: experimental factor 1

text: protocol

characteristic: experimental factor 2

text: gene knock out (EFO_0000506)

text: jmj703 mutant

text: Oryza sativa Japonica Group

text: whole organism (EFO_0002906)

text: ChIP-seq (EFO_0002692)

text: Oryza sativa Japonica Group


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

text: public

text: 7 day

text: Japanese rice

text: Dongjin

text: seedling

characteristic: dev stage

text: genotype

text: protocol

text: none (EFO_0001461)

text: wild type genotype

text: Oryza sativa Japonica Group

text: whole organism (EFO_0002906)

characteristic: organism part

text: RNA-seq (EFO_0002770)

characteristic: recurated from

text: Oryza sativa Japonica Group


text: ENA

characteristic: INSDC first public

text: public

text: 7 day

characteristic: age

text: Japanese rice

characteristic: common name

text: Dongjin

characteristic: cultivar

text: seedling

text: genotype

text: protocol

text: gene knock out (EFO_0000506)

characteristic: genetic modification

text: jmj703 mutant

characteristic: genotype

text: Oryza sativa Japonica Group

characteristic: organism

text: whole organism (EFO_0002906)

text: RNA-seq (EFO_0002770)

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2 week

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: organism part

text: protocol

characteristic: experimental factor 3

text: cmt2-3 mutant

text: Arabidopsis thaliana

text: shoot (EFO_0000992)

text: Bisulfite-seq (EFO_0003753)

characteristic: protocol

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

text: public

text: 2 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: organism part

characteristic: experimental factor 2

text: protocol

text: cmt3-12 mutant

text: Arabidopsis thaliana

text: shoot (EFO_0000992)

characteristic: organism part

text: Bisulfite-seq (EFO_0003753)

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

text: ENA

characteristic: INSDC first public

text: public

text: 3 week

characteristic: age

text: thale cress

characteristic: common name

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: ddm1-2 mutant

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: root (EFO_0000989)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: organism part

text: protocol

characteristic: experimental factor 3

text: ddm1, drd1 mutant

text: Arabidopsis thaliana

text: shoot (EFO_0000992)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

text: public

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: ddm1, rdr2 mutant

text: Arabidopsis thaliana

text: shoot (EFO_0000992)

text: Bisulfite-seq (EFO_0003753)

characteristic: protocol

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

text: ENA

characteristic: INSDC first public

text: public

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: organism part

characteristic: experimental factor 2

text: protocol

text: drd1-7 mutant

text: Arabidopsis thaliana

text: root (EFO_0000989)

characteristic: organism part

text: Bisulfite-seq (EFO_0003753)

characteristic: recurated from

text: Arabidopsis thaliana


text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2 week

characteristic: age

text: thale cress

characteristic: common name

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: drm2-3 mutant

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: shoot (EFO_0000992)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: organism part

text: protocol

characteristic: experimental factor 3

text: met1-6 mutant

text: Arabidopsis thaliana

text: root (EFO_0000989)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: rdr2-1 mutant

text: Arabidopsis thaliana

text: root (EFO_0000989)

text: Bisulfite-seq (EFO_0003753)

characteristic: protocol

text: Arabidopsis thaliana

characteristic: title


text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: organism part

characteristic: experimental factor 2

text: protocol

text: wild type genotype

text: Arabidopsis thaliana

text: root (EFO_0000989)

characteristic: organism part

text: Bisulfite-seq (EFO_0003753)

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

text: public

text: 2 week

characteristic: age

text: thale cress

characteristic: common name

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: shoot (EFO_0000992)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: organism part

text: protocol

characteristic: experimental factor 3

text: wild type genotype

text: Arabidopsis thaliana

text: root (EFO_0000989)

text: MNase-seq (EFO_0003751)

text: Arabidopsis thaliana


text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: ddm1, drd1 mutant

text: Arabidopsis thaliana

text: root (EFO_0000989)

text: RNA-seq (EFO_0002770)

characteristic: protocol

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

text: public

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: organism part

characteristic: experimental factor 2

text: protocol

text: ddm1 mutant

text: Arabidopsis thaliana

text: root (EFO_0000989)

characteristic: organism part

text: RNA-seq (EFO_0002770)

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

text: public

text: 3 week

characteristic: age

text: thale cress

characteristic: common name

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: drd1 mutant

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: root (EFO_0000989)

text: RNA-seq (EFO_0002770)

text: Arabidopsis thaliana


text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: organism part

text: protocol

characteristic: experimental factor 3

text: met1 mutant

text: Arabidopsis thaliana

text: root (EFO_0000989)

text: RNA-seq (EFO_0002770)

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 3 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: wild type genotype

text: Arabidopsis thaliana

text: root (EFO_0000989)

text: RNA-seq (EFO_0002770)

characteristic: protocol

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

text: public

text: 2 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: organism part

characteristic: experimental factor 2

text: protocol

text: cmt2-4 mutant

text: Arabidopsis thaliana

text: shoot (EFO_0000992)

characteristic: organism part

text: Bisulfite-seq (EFO_0003753)

characteristic: recurated from

text: Arabidopsis thaliana


text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2 week

characteristic: age

text: thale cress

characteristic: common name

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: cmt2-5 mutant

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: shoot (EFO_0000992)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 2 week

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: organism part

text: protocol

characteristic: experimental factor 3

text: cmt2-6 mutant

text: Arabidopsis thaliana

text: shoot (EFO_0000992)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 4 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: h1 mutant

text: Arabidopsis thaliana

text: root (EFO_0000989)

text: Bisulfite-seq (EFO_0003753)

characteristic: protocol

text: Arabidopsis thaliana

characteristic: title


text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 4 week

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: organism part

characteristic: experimental factor 2

text: protocol

text: wild type genotype

text: Arabidopsis thaliana

text: root (EFO_0000989)

characteristic: organism part

text: Bisulfite-seq (EFO_0003753)

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

text: public

text: 10 day

characteristic: age

text: thale cress

characteristic: common name

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: ddm1 mutant

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: whole organism (EFO_0002906)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 10 day

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: organism part

text: protocol

characteristic: experimental factor 3

text: h1.1, ddm1 mutant

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 10 day

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: h1.2, ddm1 mutant

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

text: Bisulfite-seq (EFO_0003753)

characteristic: protocol

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

text: public

text: 10 day

text: thale cress

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: organism part

characteristic: experimental factor 2

text: protocol

text: h1, ddm1 mutant

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

characteristic: organism part

text: Bisulfite-seq (EFO_0003753)

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

text: public

text: 10 day

characteristic: age

text: thale cress

characteristic: common name

text: Col-0 (EFO_0005148)

text: genotype

text: organism part

text: protocol

text: h1 mutant

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: whole organism (EFO_0002906)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 10 day

text: thale cress

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: organism part

text: protocol

characteristic: experimental factor 3

text: wild type genotype

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

text: Bisulfite-seq (EFO_0003753)

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 11 day

text: none (EFO_0001461)

characteristic: chemical compound

text: thale cress

text: seedling

characteristic: dev stage

text: 0 microgram per milliliter

characteristic: dose

text: Columbia (EFO_0005147)

text: chemical compound

text: dose

text: genotype

text: wild type genotype

text: continuous light regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

text: public

text: 11 day

characteristic: age

text: none (EFO_0001461)

text: thale cress

characteristic: common name

text: seedling

text: 0 microgram per milliliter

text: Columbia (EFO_0005147)

text: chemical compound

characteristic: experimental factor 1

text: dose

characteristic: experimental factor 2

text: genotype

text: upf1 mutant

characteristic: genotype

text: continuous light regimen

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

characteristic: organism part

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 11 day

text: none (EFO_0001461)

text: thale cress

text: seedling

text: 0 microgram per milliliter

text: Columbia (EFO_0005147)

characteristic: ecotype

text: chemical compound

text: dose

text: genotype

characteristic: experimental factor 3

text: upf3 mutant

text: continuous light regimen

text: Arabidopsis thaliana

characteristic: organism

text: whole organism (EFO_0002906)

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 11 day

text: none (EFO_0001461)

characteristic: chemical compound

text: thale cress

text: seedling

characteristic: dev stage

text: 0 microgram per milliliter

characteristic: dose

text: Columbia (EFO_0005147)

text: chemical compound

text: dose

text: genotype

text: upf1, upf3 double mutant

text: continuous light regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

text: public

text: 11 day

characteristic: age

text: water

text: thale cress

characteristic: common name

text: seedling

text: 0 microgram per milliliter

text: Columbia (EFO_0005147)

text: chemical compound

characteristic: experimental factor 1

text: dose

characteristic: experimental factor 2

text: genotype

text: wild type genotype

characteristic: genotype

text: continuous light regimen

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

characteristic: organism part

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 11 day

text: cycloheximide

text: thale cress

text: seedling

text: 10 microgram per milliliter

text: Columbia (EFO_0005147)

characteristic: ecotype

text: chemical compound

text: dose

text: genotype

characteristic: experimental factor 3

text: wild type genotype

text: continuous light regimen

text: Arabidopsis thaliana

characteristic: organism

text: whole organism (EFO_0002906)

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 11 day

text: thale cress

text: seedling

characteristic: dev stage

text: Col-0 (EFO_0005148)

text: genotype

text: PTB1, PTB2 miRNA knockdown

text: continuous light regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

text: Arabidopsis thaliana

characteristic: title


text: ENA

text: public

text: 11 day

characteristic: age

text: thale cress

characteristic: common name

text: seedling

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: PTB3 miRNA knockdown

characteristic: genotype

text: continuous light regimen

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

characteristic: organism part

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 11 day

text: thale cress

text: seedling

text: Col-0 (EFO_0005148)

text: genotype

text: wild type genotype

text: continuous light regimen

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC last update

text: public

text: 11 day

text: thale cress

text: seedling

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: PTB2 overexpression

text: continuous light regimen

text: Arabidopsis thaliana

characteristic: organism

text: whole organism (EFO_0002906)

text: Arabidopsis thaliana


text: ENA

text: public

characteristic: INSDC status

text: 11 day

characteristic: age

text: thale cress

text: seedling

characteristic: dev stage

text: Col-0 (EFO_0005148)

text: genotype

text: PTB3 overexpression

text: continuous light regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

text: Arabidopsis thaliana

characteristic: title


text: ENA

text: public

text: 11 day

text: thale cress

characteristic: common name

text: seedling

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: PTB1 overexpression

characteristic: genotype

text: continuous light regimen

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

characteristic: organism part

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: 5 day

text: thale cress

text: seedling

text: Col-0 (EFO_0005148)

text: genotype

text: none (EFO_0001461)

characteristic: genetic modification

text: wild type genotype

text: continuous light regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: 5 day

text: thale cress

text: seedling

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: transgenic (EFO_0004020)

text: continuous light regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana


text: ENA

text: public

characteristic: INSDC status

text: rice

characteristic: common name

text: Xieyou9308 hybrid

characteristic: cultivar

text: 2 formation of axillary shoot stage

characteristic: dev stage

text: cultivar

characteristic: experimental factor 2

text: Oryza sativa

text: root (EFO_0000989)

text: Oryza sativa

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

text: public

text: rice

text: R9308 parent line

text: 2 formation of axillary shoot stage

text: cultivar

characteristic: experimental factor 1

text: Oryza sativa

text: root (EFO_0000989)

characteristic: organism part

characteristic: recurated from

text: Oryza sativa


characteristic: ENA-FIRST-PUBLIC

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: rice

text: Xieqingzao B parent line

text: 2 formation of axillary shoot stage

text: cultivar

text: Oryza sativa

text: root (EFO_0000989)

text: Oryza sativa


characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: rice

text: Xieyou9308 hybrid

text: inflorescence emergence stage

text: cultivar

text: Oryza sativa

text: root (EFO_0000989)

text: Oryza sativa


text: ENA

text: public

characteristic: INSDC status

text: rice

characteristic: common name

text: R9308 parent line

text: inflorescence emergence stage

text: cultivar

text: Oryza sativa

characteristic: organism

text: root (EFO_0000989)

text: Oryza sativa


text: ENA

text: public

text: rice

text: Xieqingzao B parent line

characteristic: cultivar

text: inflorescence emergence stage

characteristic: dev stage

text: cultivar

characteristic: experimental factor 2

text: Oryza sativa

text: root (EFO_0000989)

text: Oryza sativa


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

text: public

text: 14 day

characteristic: age

text: thale cress

text: seedling

text: Col-0 (EFO_0005148)

characteristic: ecotype

text: genotype

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 14 day

text: thale cress

text: seedling

text: Col-0 (EFO_0005148)

text: genotype

characteristic: experimental factor 1

text: mos2-2 mutant

text: Arabidopsis thaliana

text: whole organism (EFO_0002906)

characteristic: organism part

characteristic: recurated from

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: long-grained rice

characteristic: common name

text: 93-11 line

text: genotype

text: temperature

text: wild type genotype

text: Oryza sativa Indica Group

text: inflorescence (EFO_0001029)

text: Oryza sativa Indica Group

text: 22 degree celsius

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ENA

text: public

text: long-grained rice

text: 93-11 line

characteristic: cultivar

text: genotype

text: temperature

characteristic: experimental factor 2

text: near-isogenic line 5 of Zhu1S

text: Oryza sativa Indica Group

characteristic: organism

text: inflorescence (EFO_0001029)

text: Oryza sativa Indica Group

text: 22 degree celsius


characteristic: ENA-FIRST-PUBLIC

text: ENA

characteristic: INSDC center name

text: public

text: long-grained rice

text: 93-11 line

text: genotype

text: temperature

text: near-isogenic line 8 of Zhu1S

characteristic: genotype

text: Oryza sativa Indica Group

text: inflorescence (EFO_0001029)

text: Oryza sativa Indica Group

text: 22 degree celsius

characteristic: title


text: ENA

characteristic: INSDC first public

text: public

text: long-grained rice

text: 93-11 line

text: genotype

characteristic: experimental factor 1

text: temperature

text: wild type genotype

text: Oryza sativa Indica Group

text: inflorescence (EFO_0001029)

characteristic: organism part

characteristic: recurated from

text: Oryza sativa Indica Group

text: 30 degree celsius


characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: long-grained rice

text: 93-11 line

text: genotype

text: temperature

text: near-isogenic line 5 of Zhu1S

text: Oryza sativa Indica Group

text: inflorescence (EFO_0001029)

text: Oryza sativa Indica Group

text: 30 degree celsius


characteristic: ENA-CHECKLIST

text: ENA

text: public

characteristic: Submitter Id

text: long-grained rice

characteristic: common name

text: 93-11 line

text: genotype

text: temperature

text: near-isogenic line 8 of Zhu1S

text: Oryza sativa Indica Group

text: inflorescence (EFO_0001029)

text: Oryza sativa Indica Group

text: 30 degree celsius

characteristic: temperature


characteristic: External Id

text: ENA

text: public

text: Japanese rice

text: Nipponbare (EFO_0007587)

characteristic: cultivar

text: genotype

text: protocol

characteristic: experimental factor 2

text: wild type genotype

text: Oryza sativa Japonica Group

characteristic: organism

text: leaf (EFO_0000993)

text: Bisulfite-seq (EFO_0003753)

characteristic: protocol

text: Oryza sativa Japonica Group


characteristic: ENA-FIRST-PUBLIC

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Japanese rice

text: Nipponbare (EFO_0007587)

text: genotype

text: protocol

text: PiZ-t line, T2 plants

characteristic: genotype

text: Oryza sativa Japonica Group

text: leaf (EFO_0000993)

text: Bisulfite-seq (EFO_0003753)

text: Oryza sativa Japonica Group

characteristic: title


characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC last update

text: public

text: Japanese rice

text: Nipponbare (EFO_0007587)

text: genotype

characteristic: experimental factor 1

text: protocol

text: PiZ-t line, T4 plants

text: Oryza sativa Japonica Group

text: leaf (EFO_0000993)

characteristic: organism part

text: Bisulfite-seq (EFO_0003753)

characteristic: recurated from

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

text: ENA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Japanese rice

characteristic: common name

text: Nipponbare (EFO_0007587)

text: genotype

text: protocol

text: PiZ-t line, T6 plants

text: Oryza sativa Japonica Group

text: leaf (EFO_0000993)

text: Bisulfite-seq (EFO_0003753)

text: Oryza sativa Japonica Group


characteristic: External Id

text: ENA

text: public

text: Japanese rice

text: Nipponbare (EFO_0007587)

characteristic: cultivar

text: genotype

text: protocol

characteristic: experimental factor 2

text: Pi9 line, T6 plants

text: Oryza sativa Japonica Group

characteristic: organism

text: leaf (EFO_0000993)

text: Bisulfite-seq (EFO_0003753)

text: Oryza sativa Japonica Group