text: Res

characteristic: Acronym of the soil name

text: GnS-GII

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Crop soil

characteristic: depth

characteristic: description

text: cropland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CGTCGATCTC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: humain

text: gut microbiota

text: gut microbiota

characteristic: environment (material)

text: France

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: Enterocolite

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: NEC

characteristic: title


text: Chp

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

characteristic: Number of the biological replicate

text: Crop soil

characteristic: current land use

unit: m

characteristic: depth

text: Five different soils representing forest, grassland and arable biomes were collected from across France. All necessary permits were obtained from the respective land owners (INRA, ADEME, and private owners) for the described field studies. Five individual cores (20 cm depth) were sampled at each site using an unaligned sampling design within a defined area. Replicate soil cores were then bulked to obtain a composite sample for each site. After sieving soil samples to <4 mm, aliquots of 50 g were stored at -40degC prior to DNA extraction. Several physico-chemical parameters were measured for each soil: texture, pH, CaCO3, and total C and N. Physical and chemical analyses were performed by the Soil Analysis Laboratory of INRA (Arras, France, http://www.lille.inra.fr/las) using standard procedures (Plassart et al., 2012 - PLOS ONE).

characteristic: description

text: cropland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CACGTGTCGC

characteristic: multiplex identifiers

text: This protocol is a version of ISO-11063 standard (Martin-Laurent et al., 2001). Soil was added to a bead beating tube containing 2 g of glass beads of 106 µm diameter and eight glass beads of 2 mm diameter. Each soil sample was mixed with a solution of 100 mM Tris-HCl (pH 8), 100 mM EDTA (pH8), 100 mM NaCl, 2% (w/v) polyvinylpyrrolidone (40 g/mol) and 2% (w/v) sodium dodecyl sulfate. Tubes were then shaken for 30 s at 1600 rpm in a mini bead-beater cell disruptor (Mikro-Dismembrator, Braun Biotech International) before incubation for 10 min at 70degC and centrifugation at 14,000g for 1 min. Finally, nucleic acids were precipitated by adding 1 volume of ice-cold isopropanol. The DNA pellets obtained after centrifugation (14,000g for 5 min at 4degC) were washed with 70% ethanol (full details are described in Martin-Laurent et al. (2001) and Philippot et al. (2010)).

characteristic: nucleic acid extraction

text: soil metagenome

text: 5ng of DNA were used for a 25µl PCR conducted under the following conditions: initial denaturation: 94degC_3.0min; 35 cycles of denaturation: 94degC_1.0min; annealing: 52degC_1.0min;elongation: 72degC_1.0min;final elongation:72degC_5.0min. A second PCR of 9 cycles was then conducted under similar PCR conditions with purified PCR products and ten base pair multiplex identifiers added to the primers at 5' position to specifically identify each sample and avoid PCR biases.

characteristic: pcr conditions

text: FR1:5-ANCCATTCAATCGGTANT-3;FF390:5-CGATAACGAACGAGACCT-3

characteristic: pcr primers

characteristic: ph

text: Ecofinders

unit: g

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rDNA

characteristic: target gene

unit: % sand/silt/clay

characteristic: texture

unit: g/kg

characteristic: total n

characteristic: total organic carbon


text: Chp

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop soil

characteristic: current land use

text: cropland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CATACTCTAC

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rDNA

characteristic: title


text: Epo

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Crop soil

characteristic: depth

characteristic: description

text: cropland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CGTGTCTCTA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Chp

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop soil

characteristic: current land use

text: cropland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGAGACGCGC

text: soil metagenome

characteristic: organism

text: 5ng of DNA were used for a 25µl PCR conducted under the following conditions: initial denaturation: 94degC_2.0min; 35 cycles of denaturation: 94degC_0.5min;annealing: 52degC_0.5min;elongation: 72degC_1.0min;final elongation: 72degC_7.0min. A second PCR of 9 cycles was then conducted under similar PCR conditions with purified PCR products and ten base pair multiplex identifiers added to the primers at 5' position to specifically identify each sample and avoid PCR biases.

text: F479:5-CAGCMGCYGCNGTAANAC-3; R888:5-CCGYCAATTCMTTTRAGT-3

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rDNA

characteristic: title


text: Chp

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Crop soil

characteristic: depth

characteristic: description

text: cropland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CATCTACTGA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Chp

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop soil

characteristic: current land use

text: cropland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGAGCTAGCT

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rDNA

characteristic: title


text: Epo

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Crop soil

characteristic: depth

characteristic: description

text: cropland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CACTGATGTC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Epo

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop soil

characteristic: current land use

text: cropland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CACGTGTCGC

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rDNA

characteristic: title


text: Epo

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Crop soil

characteristic: depth

characteristic: description

text: cropland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CGTAGACTAG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Epo

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop soil

characteristic: current land use

text: cropland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CACGTAGATC

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rDNA

characteristic: title


text: Epo

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Crop soil

characteristic: depth

characteristic: description

text: cropland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CAGTAGACGT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Forest soil

characteristic: current land use

text: temperate woodland biome

text: planted forest

text: forest soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CATCGAGCAG

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rDNA

characteristic: title


characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Forest soil

characteristic: depth

characteristic: description

text: temperate woodland biome

characteristic: environment (biome)

text: planted forest

characteristic: environment (feature)

text: forest soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CATCGAGCAG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Forest soil

characteristic: current land use

text: temperate woodland biome

text: planted forest

text: forest soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CATACTCTAC

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rDNA

characteristic: title


characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Forest soil

characteristic: depth

characteristic: description

text: temperate woodland biome

characteristic: environment (biome)

text: planted forest

characteristic: environment (feature)

text: forest soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CAGTAGACGT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Forest soil

characteristic: current land use

text: temperate woodland biome

text: planted forest

text: forest soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGCGACATCT

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rDNA

characteristic: title


characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Forest soil

characteristic: depth

characteristic: description

text: temperate woodland biome

characteristic: environment (biome)

text: planted forest

characteristic: environment (feature)

text: forest soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CGTGCTGTGT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Lus

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Grassland

characteristic: current land use

text: temperate grassland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGTAGACTAG

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rDNA

characteristic: title


text: Lus

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Grassland

characteristic: depth

characteristic: description

text: temperate grassland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CGTCTAGTAC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Lus

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Grassland

characteristic: current land use

text: temperate grassland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGTATATGCT

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rDNA

characteristic: title


text: Lus

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Grassland

characteristic: depth

characteristic: description

text: temperate grassland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CGTGTCTCTA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Lus

characteristic: Acronym of the soil name

text: ISO

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Grassland

characteristic: current land use

text: temperate grassland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGATCGTATA

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characteristic: organism

text: Ecofinders

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characteristic: ENA-LAST-UPDATE

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text: INRA-CMSE

characteristic: INSDC center name

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text: temperate grassland biome

characteristic: environment (biome)

text: farm

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text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CACGTAGATC

characteristic: multiplex identifiers

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text: soil metagenome

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text: cropland biome

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text: agricultural soil

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text: France

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characteristic: geographic location (longitude)

text: mimarks-survey

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text: agricultural soil

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text: cropland biome

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text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

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text: France

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characteristic: geographic location (longitude)

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characteristic: collection date

text: Crop soil

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text: cropland biome

text: farm

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text: France

characteristic: geographic location (latitude)

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text: This protocol is a modified version of ISO-11063 standard standard which includes a different mechanical lysis step (FastPrep bead-beating instead of the recommended bead-beating). Soil was added to a 15 mL Falcon tube containing 2.5 g of 1.4 mm diameter ceramic beads, 2 g of 106 µm diameter silica beads and and four glass beads of 4 mm diameter. Each soil sample was mixed with a solution of 100 mM Tris-HCl (pH 8), 100 mM EDTA (pH8), 100 mM NaCl, 2% (w/v) polyvinylpyrrolidone (40 g/mol) and 2% (w/v) sodium dodecyl sulfate. Tubes were then shaken for 3x30s at 4 m/sec in a FastPrep-24 (MP-Biomedicals, NY, USA) before incubation for 10 min at 70degC and centrifugation at 14,000g for 1 min. After removing the supernatant, proteins were precipitated with 1/10 volume of 3 M sodium acetate prior to centrifugation (14,000g for 5 min at 4degC). Finally, nucleic acids were precipitated by adding 1 volume of ice-cold isopropanol. The DNA pellets obtained after centrifugation (14,000g for 5 min at 4degC) were washed with 70% ethanol.

text: soil metagenome

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text: Grassland

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characteristic: depth

characteristic: description

text: temperate grassland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CACTCGCACG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Lus

characteristic: Acronym of the soil name

text: ISOm

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Grassland

characteristic: current land use

text: temperate grassland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGAGACGCGC

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rDNA

characteristic: title


text: Lus

characteristic: Acronym of the soil name

text: ISOm

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Grassland

characteristic: depth

characteristic: description

text: temperate grassland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CGATCGTATA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Res

characteristic: Acronym of the soil name

text: ISOm

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop soil

characteristic: current land use

text: cropland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGATCGTATA

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rDNA

characteristic: title


text: Lus

characteristic: Acronym of the soil name

text: ISOm

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Grassland

characteristic: depth

characteristic: description

text: temperate grassland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CGCTATCTAT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


text: Lus

characteristic: Acronym of the soil name

text: ISOm

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Number of the biological replicate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Grassland

characteristic: current land use

text: temperate grassland biome

text: farm

text: agricultural soil

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGAGACGCGC

text: soil metagenome

characteristic: organism

text: Ecofinders

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rDNA

characteristic: title


text: Res

characteristic: Acronym of the soil name

text: ISOm

characteristic: Acronym of the used DNA extraction method

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

text: public

text: Crop soil

characteristic: depth

characteristic: description

text: cropland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: agricultural soil

text: France

characteristic: geographic location (elevation)

text: mimarks-survey

text: CGTCTAGTAC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr conditions

characteristic: pcr primers

characteristic: ph

text: Ecofinders

characteristic: sample weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rDNA

characteristic: target gene

characteristic: texture

characteristic: total n

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH/IB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: year

characteristic: age

text: stool

characteristic: body product

characteristic: collection date

text: Parkinson's disease

characteristic: disease status

text: terrestrial biome

text: human-associated habitat

text: stool

characteristic: environment (material)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Yes

characteristic: medical history performed

text: PIGD

characteristic: miscellaneous parameter

text: ACTGAGTC

text: human gut metagenome

characteristic: organism

text: forward: AGAGTTTGATCMTGGCTCAG, reverse: GTATTACCGCGGCTGCTG

text: Parkinson's Disease Microbiome

characteristic: project name

text: human gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: female

characteristic: sex

characteristic: target subfragment

text: Parkinson 120

characteristic: title

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SECONDGENOME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

characteristic: environment (biome)

text: Oral Metagenome

characteristic: environment (feature)

text: Oral Swab

text: USA

text: human-oral

characteristic: humam oral environmental package

text: metagenome

text: human oral metagenome

text: Oral Cancer Microbiome

text: human oral metagenome

text: Illumina MiSeq 16S V4

text: Oral Cancer Microbiome


text: SECONDGENOME

text: public

characteristic: collection date

text: Human

text: Oral Metagenome

text: Oral Swab

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

text: metagenome

characteristic: investigation type

text: human oral metagenome

characteristic: organism

text: Oral Cancer Microbiome

characteristic: project name

text: human oral metagenome

text: 454 GS Junior 16S V4

characteristic: sequencing method

text: Oral Cancer Microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNAG

characteristic: INSDC center name

text: public

text: Emilio Botin, Emilio Cano, Manuel Sanchez and Pablo Vargas

characteristic: collected by

text: Farga

characteristic: cultivar

text: DNA extracted from the leaves of Santander, a millenial olive tree belonging to Olea europaea subsp. europea variety europea

characteristic: description

text: Olea europaea subsp. europaea

text: Olea europaea subsp. europaea

text: europaea

characteristic: sub species

text: leaf

characteristic: tissue type

text: Olea europaea subsp. europea (Santander)

characteristic: title


Sand-I

text: EESC/USP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sand-I

characteristic: Submitter Id

characteristic: collection date

text: Biomass from support material (sand) from stage I (with sucrose)

text: Anaerobic bioreactor

characteristic: environment (biome)

text: Anaerobic bioreactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Brazil

characteristic: geographic location (latitude)

text: metagenome

text: environmental samples

text: BACTERIAL COMMUNITY COMPOSITION AND DIVERSITY OF AN ANAEROBIC SYSTEM TREATING LAUNDRY WASTEWATER

text: environmental samples

text: Pyrosequencing

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


Sand-II

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EESC/USP

characteristic: INSDC center name

text: public

text: Sand-II

text: Biomass from support material (sand) from stage II (without sucrose)

text: Anaerobic bioreactor

text: Anaerobic bioreactor

text: sludge

text: Brazil

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: environmental samples

characteristic: organism

characteristic: project name

text: environmental samples

text: Pyrosequencing

characteristic: sequencing method

text: wastewater/sludge


Phase Separator I

text: EESC/USP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Phase Separator I

characteristic: Submitter Id

text: Biomass from phase separator from stage I (with sucrose)

characteristic: description

text: Anaerobic bioreactor

text: Anaerobic bioreactor

text: sludge

text: Brazil

text: metagenome

text: environmental samples

text: environmental samples

text: Pyrosequencing

characteristic: title

text: wastewater/sludge


Phase separator-II

characteristic: ENA-CHECKLIST

text: EESC/USP

text: public

text: Phase separator-II

characteristic: collection date

text: Biomass from phase separator from stage II (without sucrose)

text: Anaerobic bioreactor

characteristic: environment (biome)

text: Anaerobic bioreactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Brazil

characteristic: geographic location (latitude)

text: metagenome

text: environmental samples

text: environmental samples

text: Pyrosequencing

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


SUPPORT MATERIAL-I

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EESC/USP

characteristic: INSDC center name

text: public

text: SUPPORT MATERIAL-I

text: BACTERIAL COMMUNITY FROM AN ANAEROBIC FLUIDIZED BED REACTOR INVOLVED IN THE LINEAR ALCOHOL ETHOXYLATE DEGRADATION

text: Anaerobic reactor

text: Anaerobic reactor

text: sludge

text: Brazil

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: environmental samples

characteristic: organism

text: environmental samples

text: Pyrosequencig

text: Biomass from the support materia from the phase I (with sucrose)

text: wastewater/sludge


SUPPORT MATERIAL-II

text: EESC/USP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SUPPORT MATERIAL-II

characteristic: Submitter Id

text: Anaerobic reactor

text: Anaerobic reactor

text: sludge

text: Brazil

text: metagenome

text: environmental samples

characteristic: project name

text: environmental samples

text: Pyrosequencig

characteristic: sequencing method

text: Biomass from the support materia from the phase II (without sucrose)

text: wastewater/sludge


PHASE SEPARATOR-I

characteristic: ENA-CHECKLIST

text: EESC/USP

text: public

text: PHASE SEPARATOR-I

characteristic: collection date

characteristic: description

text: Anaerobic reactor

characteristic: environment (biome)

text: Anaerobic reactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Brazil

text: metagenome

text: environmental samples

text: environmental samples

text: Pyrosequencig

text: Biomass from the phase separator from the phase I (with sucrose)

characteristic: title

text: wastewater/sludge


PHASE SEPARATOR-II

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EESC/USP

characteristic: INSDC center name

text: public

text: PHASE SEPARATOR-II

text: Anaerobic reactor

text: Anaerobic reactor

text: sludge

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: environmental samples

text: environmental samples

text: Pyrosequencig

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: MPIPZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Soil bacterial community profile #1 of the greenhouse replicate experiment #1, sequenced in Library L28

text: Soil

text: Soil

text: Germany

characteristic: host taxid

text: metagenome

characteristic: investigation type

characteristic: miscellaneous parameter

text: ACTGCA

characteristic: multiplex identifiers

text: root metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPIPZ

text: public

characteristic: collection date

text: Soil bacterial community profile #2 of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: description

text: Soil

characteristic: environment (biome)

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Germany

text: metagenome

text: AGAGTC

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

characteristic: project name

text: root metagenome

text: pyrosequencing

characteristic: sequencing method

characteristic: title


characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Soil bacterial community profile #3 of the greenhouse replicate experiment #1, sequenced in Library L28

text: Soil

text: Soil

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host taxid

text: metagenome

text: AGCTGA

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPIPZ

text: public

characteristic: collection date

text: Root bacterial community profile #1 from A. halleri (genotype Auby) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: description

text: Root

text: Auby

characteristic: genotype

text: Germany

text: metagenome

characteristic: investigation type

characteristic: miscellaneous parameter

text: AGTCAG

characteristic: multiplex identifiers

text: root metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Root bacterial community profile #2 from A. halleri (genotype Auby) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: environment (biome)

characteristic: environment (feature)

text: Root

characteristic: environment (material)

text: Auby

text: Germany

text: metagenome

text: ATATCG

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

characteristic: project name

text: root metagenome

text: pyrosequencing

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPIPZ

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Root bacterial community profile #3 from A. halleri (genotype Auby) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: description

text: Root

text: Auby

characteristic: genotype

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host taxid

text: metagenome

text: ATCGAT

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Root bacterial community profile #2 from A. lyrata (genotype Mn47) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: environment (biome)

text: Root

text: Mn

text: Germany

text: metagenome

characteristic: investigation type

characteristic: miscellaneous parameter

text: ATGCTA

characteristic: multiplex identifiers

text: root metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPIPZ

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Root bacterial community profile #3 from A. lyrata (genotype Mn47) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: environment (feature)

text: Root

characteristic: environment (material)

text: Mn

text: Germany

text: metagenome

text: CACAGT

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

characteristic: project name

text: root metagenome

text: pyrosequencing

characteristic: sequencing method

characteristic: title


characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Root bacterial community profile #1 from A. thaliana (genotype Ler) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: description

characteristic: environment (biome)

text: Root

text: Ler

characteristic: genotype

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host taxid

text: metagenome

text: GACTAG

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPIPZ

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Root bacterial community profile #2 from A. thaliana (genotype Ler) of the greenhouse replicate experiment #1, sequenced in Library L28

text: Root

text: Ler

text: Germany

text: metagenome

characteristic: investigation type

characteristic: miscellaneous parameter

text: GAGATC

characteristic: multiplex identifiers

text: root metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Root bacterial community profile #3 from A. thaliana (genotype Ler) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: description

characteristic: environment (feature)

text: Root

characteristic: environment (material)

text: Ler

text: Germany

text: metagenome

text: GATCGA

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

characteristic: project name

text: root metagenome

text: pyrosequencing

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPIPZ

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Root bacterial community profile #1 from C. hirsuta (genotype Oxford) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: environment (biome)

text: Root

text: Ox

characteristic: genotype

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host taxid

text: metagenome

text: GTACAC

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Root bacterial community profile #2 from C. hirsuta (genotype Oxford) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: description

text: Root

text: Ox

text: Germany

text: metagenome

characteristic: investigation type

characteristic: miscellaneous parameter

text: GTCACA

characteristic: multiplex identifiers

text: root metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPIPZ

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Root bacterial community profile #3 from C. hirsuta (genotype Oxford) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: environment (feature)

text: Root

characteristic: environment (material)

text: Ox

text: Germany

text: metagenome

text: GTGTGT

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

characteristic: project name

text: root metagenome

text: pyrosequencing

characteristic: sequencing method

characteristic: title


characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Root bacterial community profile #1 from A. thaliana (genotype Col) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: description

characteristic: environment (biome)

text: Root

text: Col

characteristic: genotype

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host taxid

text: metagenome

text: TACGTA

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPIPZ

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Root bacterial community profile #2 from A. thaliana (genotype Col) of the greenhouse replicate experiment #1, sequenced in Library L28

text: Root

text: Col

text: Germany

text: metagenome

characteristic: investigation type

characteristic: miscellaneous parameter

text: TAGCAT

characteristic: multiplex identifiers

text: root metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Arabidopsis relatives root microbiota

text: root metagenome

text: pyrosequencing


characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Root bacterial community profile #3 from A. thaliana (genotype Col) of the greenhouse replicate experiment #1, sequenced in Library L28

characteristic: description

characteristic: environment (feature)

text: Root

characteristic: environment (material)

text: Col

text: Germany

text: metagenome

text: TATACG

text: root metagenome

text: plant-associated

text: Arabidopsis relatives root microbiota

characteristic: project name

text: root metagenome

text: pyrosequencing

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MPIPZ

text: public

characteristic: SRA accession

characteristic: Submitter Id

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text: Root bacterial community profile #1 from A. halleri (genotype Auby) of the greenhouse replicate experiment #1, sequenced in Library L28

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text: Root bacterial community profile #2 from A. halleri (genotype Auby) of the greenhouse replicate experiment #1, sequenced in Library L28

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text: Root bacterial community profile #2 from A. lyrata (genotype Mn47) of the greenhouse replicate experiment #1, sequenced in Library L28

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