E-MTAB-4724:Sample 39

text: NC State University

text: public

text: E-MTAB-4724:Sample 39

text: ArrayExpress

characteristic: description

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 39


E-MTAB-4724:Sample 40

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NC State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4724:Sample 40

tag: Namespace:NC State University

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: The experiments were conducted in greenhouse conditions. Meloidogyne hapla in all experiments were maintained on the root system of Tomato (cv. Rutgers). An egg mass of M. hapla isolated by the standard bleach procedure was purified on a 40% sucrose density gradient as previously described (Byrd et al. 1996). For sterile M. hapla egg hatches, hatcheries were prepared with mesh-based sieves in a shallow bowl. The collection of viable infective J2 was obtained after three days of hatching. Host plant, Medicago truncatula, was synchronously inoculated with M. hapla J2. The acquisition of homogenous mixture J2 was supported by collecting over three days after egg isolation and hatching, which diluted the potential effects of post-hatch age of J2 on larval penetration variance. RKN and host plant materials were harvested at indicated time points and immediately frozen in liquid nitrogen. RNA isolation procedure was followed by the Dynabeads® RNA DirectTM Purifciation Kit protocol. The RNA quality and concentration were checked on Bioanalyzer 2100 (Agilent, Santa Clara, CA, USA) and RNA Pico Chip respectively. Libraries were prepared using a TruSeq RNA library prep kit v1 (Illumina, San Diego, CA, USA).

text: Meloidogyne hapla infected

characteristic: infect

text: root metagenome

characteristic: organism

text: root metagenome

text: root

characteristic: organism part

text: root metagenome

characteristic: time

text: Sample 40

characteristic: title

type: has member


E-MTAB-4724:Sample 41

text: NC State University

text: public

text: E-MTAB-4724:Sample 41

text: ArrayExpress

characteristic: description

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 41


E-MTAB-4724:Sample 42

characteristic: ENA-CHECKLIST

text: NC State University

text: public

text: E-MTAB-4724:Sample 42

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 42


E-MTAB-4724:Sample 43

characteristic: ENA-FIRST-PUBLIC

text: NC State University

text: public

text: E-MTAB-4724:Sample 43

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 43


E-MTAB-4724:Sample 44

characteristic: ENA-LAST-UPDATE

text: NC State University

text: public

text: E-MTAB-4724:Sample 44

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 44


E-MTAB-4724:Sample 45

characteristic: External Id

text: NC State University

text: public

text: E-MTAB-4724:Sample 45

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 45


E-MTAB-4724:Sample 46

text: NC State University

characteristic: INSDC center name

text: public

text: E-MTAB-4724:Sample 46

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 46


text: NC State University

characteristic: INSDC first public

text: public

text: E-MTAB-4724:Sample2_shoot_2_day_after_infection

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: shoot

text: root metagenome

text: 2 day


text: NC State University

characteristic: INSDC last update

text: public

text: E-MTAB-4724:Sample3_shoot_4_day_after_infection

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: shoot

text: root metagenome

text: 4 day


text: NC State University

text: public

characteristic: INSDC status

text: E-MTAB-4724:Sample4_shoot_5_day_after_infection

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: shoot

text: root metagenome

text: 5 day


text: NC State University

text: public

characteristic: SRA accession

text: E-MTAB-4724:Sample5_shoot_7_day_after_infection

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: shoot

text: root metagenome

text: 7 day


text: NC State University

text: public

text: E-MTAB-4724:Sample6_root_1_day_after_infection

characteristic: Submitter Id

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: 1 day


text: NC State University

text: public

text: E-MTAB-4724:Sample7_root_2_day_after_infection

text: ArrayExpress

characteristic: broker name

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: 2 day


text: NC State University

text: public

text: E-MTAB-4724:Sample8_root_4_day_after_infection

text: ArrayExpress

text: Meloidogyne hapla infected

characteristic: infect

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: 4 day


text: NC State University

text: public

text: E-MTAB-4724:Sample9_root_5_day_after_infection

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

characteristic: organism

text: root metagenome

text: root

text: root metagenome

text: 5 day


E-MTAB-4732:HEK293 control 1

text: public

text: E-MTAB-4732:HEK293 control 1

tag: Namespace:Institute of Molecular Life Sciences University of Zurich

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: Protocols: HEK293 control and TDP-43 KD preparation 3'-end Lexogen Reverse kit

text: control

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: non-targeting siRNA

characteristic: rna interference

text: Homo sapiens

text: HEK293 control 1


E-MTAB-4732:HEK293 control 2

characteristic: ENA-CHECKLIST

text: Institute of Molecular Life Sciences University of Zurich

text: public

text: E-MTAB-4732:HEK293 control 2

text: ArrayExpress

text: human

characteristic: description

text: control

text: Homo sapiens

text: Homo sapiens

text: non-targeting siRNA

text: Homo sapiens

text: HEK293 control 2

characteristic: title


E-MTAB-4732:HEK293 control 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4732:HEK293 control 3

text: ArrayExpress

text: human

text: control

text: Homo sapiens

text: Homo sapiens

text: non-targeting siRNA

text: Homo sapiens

text: HEK293 control 3


E-MTAB-4732:HEK293 control 4

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4732:HEK293 control 4

text: ArrayExpress

text: human

text: control

text: Homo sapiens

text: Homo sapiens

text: non-targeting siRNA

text: Homo sapiens

text: HEK293 control 4


E-MTAB-4732:HEK293 control 5

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4732:HEK293 control 5

characteristic: Submitter Id

text: ArrayExpress

text: human

text: control

text: Homo sapiens

text: Homo sapiens

text: non-targeting siRNA

text: Homo sapiens

text: HEK293 control 5


E-MTAB-4732:HEK293 control 6

text: public

text: E-MTAB-4732:HEK293 control 6

text: ArrayExpress

characteristic: broker name

text: human

text: control

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: non-targeting siRNA

text: Homo sapiens

text: HEK293 control 6


E-MTAB-4732:HEK293 TDP-43 KD 1

text: public

text: E-MTAB-4732:HEK293 TDP-43 KD 1

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: TDP-43 knock-down

text: Homo sapiens

text: Homo sapiens

text: TDP-43 stealth siRNA

text: Homo sapiens

text: HEK293 TDP-43 KD 1


E-MTAB-4732:HEK293 TDP-43 KD 2

text: public

text: E-MTAB-4732:HEK293 TDP-43 KD 2

text: ArrayExpress

text: human

text: TDP-43 knock-down

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: TDP-43 stealth siRNA

characteristic: rna interference

text: Homo sapiens

text: HEK293 TDP-43 KD 2


E-MTAB-4732:HEK293 TDP-43 KD 3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4732:HEK293 TDP-43 KD 3

text: ArrayExpress

text: human

characteristic: description

text: TDP-43 knock-down

text: Homo sapiens

text: Homo sapiens

text: TDP-43 stealth siRNA

text: Homo sapiens

text: HEK293 TDP-43 KD 3


E-MTAB-4732:HEK293 TDP-43 KD 4

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4732:HEK293 TDP-43 KD 4

text: ArrayExpress

text: human

text: TDP-43 knock-down

text: Homo sapiens

text: Homo sapiens

text: TDP-43 stealth siRNA

text: Homo sapiens

text: HEK293 TDP-43 KD 4

characteristic: title


E-MTAB-4732:HEK293 TDP-43 KD 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4732:HEK293 TDP-43 KD 5

text: ArrayExpress

text: human

text: TDP-43 knock-down

text: Homo sapiens

text: Homo sapiens

text: TDP-43 stealth siRNA

text: Homo sapiens

text: HEK293 TDP-43 KD 5


E-MTAB-4732:HEK293 TDP-43 KD 6

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4732:HEK293 TDP-43 KD 6

text: ArrayExpress

text: human

text: TDP-43 knock-down

text: Homo sapiens

text: Homo sapiens

text: TDP-43 stealth siRNA

text: Homo sapiens

text: HEK293 TDP-43 KD 6


characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF CALIFORNIA - SAN FRANCISCO

characteristic: collection date

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MAAP

characteristic: project name

text: human gut metagenome

text: Sequencing by synthesis

characteristic: sequencing method

text: Neonatal Gut Microbiome and Luminal Microenvironment Predicts Childhood Multi-Sensitized Atopy.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CALIFORNIA - SAN FRANCISCO

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: human-associated habitat

text: feces

text: USA

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: MAAP

text: human gut metagenome

text: Sequencing by synthesis

characteristic: title


characteristic: External Id

text: UNIVERSITY OF LEEDS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF LEEDS

characteristic: collection date

text: Snow and ice

characteristic: environment (biome)

text: Snow and ice

text: Snow and ice

text: Svalbard

text: metagenome

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: metagenome

text: Linking microbial diversity and functionality of Arctic glacial surface habitats

text: metagenome

text: Ion Torrent


text: UNIVERSITY OF LEEDS

text: public

text: snow and ice

text: snow and ice

characteristic: environment (feature)

text: snow and ice

characteristic: environment (material)

text: Svalbard

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Ion Torrent


text: Neisseria meningitidis

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Neisseria meningitidis

characteristic: common name

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis


text: Neisseria lactamica

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Neisseria lactamica

text: Neisseria lactamica

text: Neisseria lactamica

characteristic: title


text: Neisseria polysaccharea

text: SC

text: public

text: Neisseria polysaccharea

text: Neisseria polysaccharea

text: Neisseria polysaccharea


text: Neisseria subflava

text: SC

text: public

text: Neisseria subflava

text: Neisseria subflava

text: Neisseria subflava


text: Neisseria cinerea

text: SC

text: public

text: Neisseria cinerea

text: Neisseria cinerea

text: Neisseria cinerea


text: CRG

text: public

text: Jurkat

characteristic: cell type

text: human

text: Homo sapiens

text: Homo sapiens

text: T lymphocyte

characteristic: tissue type


text: CRG

text: public

text: Jurkat

text: human

text: Homo sapiens

text: Homo sapiens

text: T lymphocyte


text: academisch medisch centrum

text: public

tag: Namespace:academisch medisch centrum

characteristic: collection date

text: human

text: ENVO:dense settlement biome

characteristic: environment (biome)

text: ENVO:human-associated habitat

characteristic: environment (feature)

text: anthropogenic environmental material(ENVO:0010001)

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

text: E: 629022.35

characteristic: geographic location (latitude)

text: N: 5803906.2

characteristic: geographic location (longitude)

text: human-associated

characteristic: humam oral environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: academisch medisch centrum

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: ENVO:dense settlement biome

text: ENVO:human-associated habitat

text: Netherlands

text: E: 629022.35

text: N: 5803906.2

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina


text: Hohenheim University

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Hohenheim University

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: arabidopsis populations

characteristic: title


text: NCKU

text: public

characteristic: collection date

text: TMAH-degradingi consortia from a UASB reactor

characteristic: description

text: wastewater

characteristic: environment (biome)

text: anaerobic reactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

text: CM

text: UASB

characteristic: reactor type

text: wastewater metagenome

text: pyrosequencing

text: TMAH-degrading consortia

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NCKU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: TMAH-degradingi consortia from a CSTR reactor

text: wastewater

text: anaerobic reactor

text: sludge

text: Taiwan

text: metagenome

text: wastewater metagenome

text: CM

characteristic: project name

text: CSTR

text: wastewater metagenome

text: pyrosequencing

characteristic: sequencing method

text: TMAH-degrading consortia

text: wastewater/sludge


E-MTAB-4752:Sample 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4752:Sample 1

tag: Namespace:Laboratory of Molecular Medicine and Genomics, University of Salerno

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: prostate cancer cell line

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Human prostate cancers cell lines, PC3 were obtained from American type culture collection (ATCC - Manassas, VA, USA) and authenticated by PCR/short tandem repeat (STR) analysis PC3 cells were cultured in DMEM medium containing 10% foetal bovine serum (FBS, EuroClone®), 2mM Glutammine and 100 U/ml of penicillin/streptomycin (EuroClone®). Human prostate fibroblasts (HPFs and CAFs) were isolated from surgical explantation after patient informed consent in accord with the Ethics Committee of the Azienda Ospedaliera Universitaria Careggi. Briefly, HPFs and CAFs were extracted from prostate of benign prostate hyperplasia-bearing patients and from intra-tumoural regions of prostate of PCa-bearing patients respectively. Tissues were digested overnight in 1 mg/ml collagenase I, and cells were plated in DMEM containing 10% FBS. PC3 induction were performed with a treatment for 72h with conditioned mediums (CM-HPF or CM-CAF) (CM from HPFs and CAFs was obtained by 48-h serum-starved cells, clarified by centrifugation, and freshly used) PC3 induction were performed with a treatment for 72h with conditioned mediums (CM-HPF or CM-CAF) (CM from HPFs and CAFs was obtained by 48-h serum-starved cells, clarified by centrifugation, and freshly used) Indexed libraries were prepared from 1 ug purified RNA with TruSeq Stranded Total RNA Sample Prep Kit (Illumina) according to the manufacturer’s instructions

characteristic: description

text: cancer associated fibroblast conditioned media

characteristic: growth condition

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-4752:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Molecular Medicine and Genomics, University of Salerno

text: public

text: E-MTAB-4752:Sample 10

text: ArrayExpress

text: prostate cancer cell line

text: human

text: human prostate fibroblasts conditioned media

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 10


E-MTAB-4752:Sample 11

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-4752:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: prostate cancer cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 11


E-MTAB-4752:Sample 12

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4752:Sample 12

text: ArrayExpress

text: prostate cancer cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 12


E-MTAB-4752:Sample 2

text: public

text: E-MTAB-4752:Sample 2

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: prostate cancer cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-4752:Sample 3

text: public

text: E-MTAB-4752:Sample 3

text: ArrayExpress

text: prostate cancer cell line

characteristic: cell type

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 3


E-MTAB-4752:Sample 4

text: public

text: E-MTAB-4752:Sample 4

text: ArrayExpress

text: prostate cancer cell line

text: human

characteristic: description

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 4


E-MTAB-4752:Sample 5

text: public

text: E-MTAB-4752:Sample 5

text: ArrayExpress

text: prostate cancer cell line

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-4752:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4752:Sample 6

text: ArrayExpress

text: prostate cancer cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 6


E-MTAB-4752:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4752:Sample 7

text: ArrayExpress

text: prostate cancer cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 7


E-MTAB-4752:Sample 8

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4752:Sample 8

text: ArrayExpress

text: prostate cancer cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 8


E-MTAB-4752:Sample 9

text: public

characteristic: SRA accession

text: E-MTAB-4752:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: prostate cancer cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 9


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: MAAP

characteristic: project name

text: human gut metagenome

text: Sequencing by synthesis

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: altitude

text: False

text: 12/4/14 12:00

text: bioreactor metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: True

text: Inoc

characteristic: elevation

text: ENVO:urban biome

characteristic: env biome

text: ENVO:anot applicableerobic bioreactor

characteristic: env feature

text: ENVO:anaerobic sludge

characteristic: env matter

text: True

text: True

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: bioreactor metagenome

characteristic: organism

text: Inoc

text: Inoc

characteristic: phase

text: Ithaca

text: Cornell

text: True

text: completed

characteristic: sample size

text: anaerobic reactor biomass

characteristic: sample type

text: sequenced (16S)

text: bioreactor metagenome

characteristic: title

text: High n-caprylate productivities and specificities from dilute ethanol and acetate: chain elongation with microbiomes to upgrade syngas fermentation products


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

text: False

text: 1/1/15 12:00

text: bioreactor metagenome

characteristic: common name

text: GAZ:United States of America

text: True

text: ENVO:urban biome

text: ENVO:anaerobic bioreactor

text: ENVO:anaerobic sludge

text: True

text: True

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text: UCSDMI

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text: GAZ:United States of America

characteristic: country

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characteristic: elevation

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text: True

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characteristic: host subject id

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characteristic: ENA-CHECKLIST

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characteristic: host taxid

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characteristic: host taxid

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characteristic: SRA accession

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text: UCSDMI

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characteristic: SRA accession

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text: False

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characteristic: host taxid

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text: bioreactor metagenome

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text: bioreactor metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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text: public

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text: False

text: 6/9/15 12:00

text: bioreactor metagenome

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text: True

text: ENVO:urban biome

text: ENVO:anaerobic bioreactor

text: ENVO:anaerobic sludge

text: True

text: True

text: bioreactor metagenome

text: 210_OLR_63.8_Eth_Ace_15_HRT_1.5_Overload

characteristic: phase

text: Ithaca

text: Cornell

text: True

text: completed

characteristic: sample size

text: anaerobic reactor biomass

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text: sequenced (16S)

text: bioreactor metagenome

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text: UCSDMI

text: public

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characteristic: Submitter Id

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text: False

text: 6/19/15 12:00

text: bioreactor metagenome

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text: GAZ:United States of America

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text: True

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characteristic: env matter

text: True

text: True

characteristic: host subject id

text: bioreactor metagenome

text: Ithaca

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text: anaerobic reactor biomass

text: sequenced (16S)

text: bioreactor metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ALASKA FAIRBANKS

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF ALASKA FAIRBANKS

text: Station 33

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: seawater 5m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Station 60

text: seawater metagenome

text: seawater metagenome

text: seawater 1m

characteristic: title


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 60

characteristic: description

text: seawater metagenome

text: seawater metagenome

text: seawater 137m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 60

text: seawater metagenome

text: seawater metagenome

text: seawater 860m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 60

text: seawater metagenome

text: seawater metagenome

text: seawater 57m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 60

text: seawater metagenome

text: seawater metagenome

text: seawater 25m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 60

text: seawater metagenome

text: seawater metagenome

text: seawater 415m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 60

text: seawater metagenome

text: seawater metagenome

text: seawater 240m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 61

text: seawater metagenome

text: seawater metagenome

text: seawater 29m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 61

text: seawater metagenome

text: seawater metagenome

text: seawater 12m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 61

text: seawater metagenome

text: seawater metagenome

text: seawater 20m


text: UNIVERSITY OF ALASKA FAIRBANKS

text: public

text: Station 61

text: seawater metagenome

text: seawater metagenome

text: seawater 1m


text: BAYLOR COLLEGE OF ME

text: public

tag: Namespace:BAYLOR COLLEGE OF ME

text: Escherichia coli K-12

text: Escherichia coli K-12

text: ChIP-Seq samples


text: NCKU

text: public

characteristic: collection date

text: sludge from 30cm in a UASB reactor

text: wastewater

characteristic: environment (biome)

text: Reactor

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text: sludge

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text: Taiwan

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

text: CMb

characteristic: project name

text: wastewater metagenome

text: Miseq

characteristic: sequencing method

text: Bacterial members of TMAH-degrading consortia

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: NCKU

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: sludge at 200cm in a UASB reactor

text: wastewater

text: Reactor

text: sludge

text: Taiwan

text: metagenome

text: wastewater metagenome

text: CMb

text: wastewater metagenome

text: Miseq

text: wastewater/sludge


text: NCKU

text: public

characteristic: SRA accession

characteristic: Submitter Id

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text: sludge from 400cm in a UASB reactor

characteristic: description

text: wastewater

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text: Reactor

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text: sludge

text: Taiwan

text: metagenome

text: wastewater metagenome

characteristic: organism

text: CMb

text: wastewater metagenome

text: Miseq

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text: wastewater/sludge


text: NCKU

text: public

text: sludge from a CSTR reactor

text: wastewater

text: Reactor

text: sludge

characteristic: environment (material)

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

text: CMb

characteristic: project name

text: wastewater metagenome

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characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

tag: Namespace:National Institute for Environmental Studies

text: Complete genome sequence of Cyanobium sp. NIES-981

text: Cyanobium sp. NIES-981

text: Cyanobium sp. NIES-981

characteristic: strain


text: UNIVERSITY TOULOUSE III

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY TOULOUSE III

characteristic: Submitter Id

text: Lactococcus lactis subsp. lactis

characteristic: organism

text: Lactococcus lactis subsp. lactis

text: L. lactis subsp. lactis A12

characteristic: title


text: UNIVERSITY OF LEEDS

text: public

characteristic: collection date

text: Snow and ice

characteristic: environment (biome)

text: Snow and ice

characteristic: environment (feature)

text: Snow and ice

characteristic: environment (material)

text: Svalbard

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: metagenome

text: metagenome

text: Ion Torrent


E-MTAB-3897:Control 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3897:Control 1

tag: Namespace:Robarts Research Institute Western University, London, ON, CANADA

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: VAChTNkx2.1-Cre-flox/flox mice were generated by crossing VAChTflox/flox (crossed for 5 generations with C57BL/6J) with the Nkx2.1-Cre mouse line (C57BL/6J-Tg(Nkx2-1- cre)2Sand/J), purchased from The Jackson Laboratory (JAX stock no. 008661). Control mice used were VAChTflox/flox littermates RNA libraries were then constructed using the standard Illumina protocols.

characteristic: description

text: VAChTflox/flox

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: hippocampus

characteristic: organism part

text: wild type

characteristic: phenotype

text: Mus musculus

text: Control 1


E-MTAB-3897:Control 2

text: Robarts Research Institute Western University, London, ON, CANADA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3897:Control 2

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: VAChTflox/flox

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hippocampus

text: wild type

text: Mus musculus

text: Control 2

characteristic: title


E-MTAB-3897:Control 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3897:Control 3

text: ArrayExpress

text: house mouse

text: VAChTflox/flox

text: Mus musculus

text: Mus musculus

text: hippocampus

text: wild type

text: Mus musculus

text: Control 3


E-MTAB-3897:Control 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3897:Control 4

text: ArrayExpress

text: house mouse

text: VAChTflox/flox

text: Mus musculus

text: Mus musculus

text: hippocampus

text: wild type

text: Mus musculus

text: Control 4


E-MTAB-3897:Tg 1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3897:Tg 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: hippocampus

text: hippocampal Acetycholine release knockout

text: Mus musculus

text: Tg 1


E-MTAB-3897:Tg 2

text: public

text: E-MTAB-3897:Tg 2

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: hippocampus

text: Mus musculus

text: Tg 2


E-MTAB-3897:Tg 3

text: public

text: E-MTAB-3897:Tg 3

text: ArrayExpress

text: house mouse

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: hippocampus

text: Mus musculus

text: Tg 3


text: Anopheles Gambiae

characteristic: ArrayExpress-Species

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Danio rerio

text: SC

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: DNA from Zebrafish for Exome pulldown

characteristic: sample description

text: Danio rerio


characteristic: ArrayExpress-DevelopmentalStage

text: Spinal cord

characteristic: ArrayExpress-OrganismPart

text: Control

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: SMA Het P2 Rep2

text: Mus musculus

characteristic: strain


text: Spinal cord

text: Control

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: SMA Het P6 Rep2

text: Mus musculus

characteristic: title


text: Spinal cord

text: Control

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: SMA Het P10 Rep2

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Spinal cord

characteristic: ArrayExpress-OrganismPart

text: SMA

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: SMA Hom P2 Rep2

characteristic: sample description

text: Mus musculus


text: Spinal cord

text: SMA

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: SMA Hom P6 Rep2

text: Mus musculus


text: Spinal cord

text: SMA

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: SMA Hom P10 Rep2

text: Mus musculus

characteristic: strain


text: Spinal cord

text: Control

text: Mus musculus

characteristic: External Id

text: SC

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characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: SMA Het P2 Rep3

text: Mus musculus

characteristic: title


text: Spinal cord

text: Control

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: SMA Het P6 Rep3

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Spinal cord

characteristic: ArrayExpress-OrganismPart

text: Control

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: SMA Het P10 Rep3

characteristic: sample description

text: Mus musculus


text: Spinal cord

text: SMA

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: SMA Hom P2 Rep3

text: Mus musculus


text: Spinal cord

text: SMA

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: SMA Hom P6 Rep3

text: Mus musculus

characteristic: strain


text: Spinal cord

text: SMA

text: Mus musculus

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: SMA Hom P10 Rep3

text: Mus musculus

characteristic: title


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Infant fecal microbiota

text: Homo sapiens


text: Mycobacterium abscessus

text: SC

characteristic: INSDC last update

text: public

text: Mycobacterium abscessus

text: Mycobacterium abscessus

text: Mycobacterium abscessus


text: Normal

characteristic: ArrayExpress-Phenotype

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: sample description

text: Mus musculus


text: Oesophageal

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mouse

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


text: breast cancer

characteristic: ArrayExpress-CellType

text: Homo sapiens

characteristic: ENA-CHECKLIST

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: prostate cancer

text: Homo sapiens

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: BIRMINGHAM UNIVERSITY

text: public

tag: Namespace:BIRMINGHAM UNIVERSITY

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: Nasal Swab

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus


text: female

characteristic: ArrayExpress-Sex

text: Human gut metagenome

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Human gut metagenome

characteristic: common name

text: human gut metagenome

characteristic: organism

text: Human faecal sample

text: human gut metagenome

characteristic: title


text: male

text: Human gut metagenome

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Human gut metagenome

text: human gut metagenome

text: Human faecal sample

characteristic: sample description

text: human gut metagenome


text: unidentified

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: unidentified

text: unidentified

text: Negative kit control

text: unidentified


text: fermentation metagenome

text: SC

text: public

text: fermentation metagenome

text: fermentation metagenome

text: fermentor sample

text: fermentation metagenome


text: unidentified

text: SC

text: public

text: unidentified

text: unidentified

text: Dnase free water

text: unidentified


text: chlamydia pneumonia and mus musculus

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Streptococcus pneumoniae

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Staphylococcus aureus

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: CEBITEC

text: public

characteristic: collection date

text: Biogas plant

characteristic: environment (biome)

text: Biogas plant

characteristic: environment (feature)

text: Biogas plant sludge

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: metagenome

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Biphasic study to characterize agricultural biogas plants by high-throughput 16S rRNA gene amplicon sequencing and microscopic analysis


text: Tumour

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


E-MTAB-4747:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GenXPro GmbH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4747:Sample 1

tag: Namespace:GenXPro GmbH

text: ArrayExpress

characteristic: broker name

text: HUVEC cell

characteristic: cell type

text: human

text: Protocols: Investigations with human umbilical vein endothelial cells (HUVEC) were performed with written informed consent from six paras and following the ethical guidelines. Umbilical cords were collected after birth and stored at 2-8 °C. HUVEC were isolated with pre-warmed (37 °C) GibcoTM dispase solution (3.6-3.8 U/ml; Thermo Fisher Scientific, Darmstadt, Germany, 17105041) within one to four hours after birth. After incubation for one hour, the obtained cell suspension was centrifuged (5 min., 200 g), the supernatant discarded and the cell pellet resuspended in complete endothelial cell growth medium (PromoCell, Heidelberg, Germany, C-22210, Suppl. C-39210) supplemented with 5% heat inactivated fetal bovine serum (FBS; Thermo Fisher Scientific, 10500-064). HUVEC were seeded in an appropriate number and size of culture flasks (Sarstedt AG & Co., Numbrecht, Germany, 83.3911.002) and propagated in complete endothelial cell growth medium supplemented with 5% FBS. To facilitate cell attachment, the flasks have been coated with gelatin type B solution (Sigma-Aldrich, Saint-Louis, MO, USA, G9391) 2% in 0.1 M HCl. At a confluence of 95-100% HUVEC were dissociated with GibcoTM trypsin-EDTA 0.05% (Thermo Fisher Scientific, 25300-054). For Xellulin-based cell culture, Xell-Discs (Xellutec GmbH, Neuried, Germany, XRM-6w-1) have been coated with 0.5 ml Cellovations® rat tail (type I) collagen solution (750 μg/ml in 0.1% acetic acid; PELOBiotech GmbH, Martinsried, Germany, PB-LU-000-0003-100-f), washed two times with DPBS (1x) w/o Ca & Mg (Thermo Fisher Scientific, 14190-094) and then preincubated in complete endothelial cell growth medium supplemented with a total of 20% FBS overnight. Propagated HUVEC passage 1 were seeded at a density of 3.8x104 cells/cm2 per Xell-Disc and cultivated in complete endothelial cell growth medium supplemented with 1% FBS. The culture medium was replaced the next day and then twice a week. After three weeks and six weeks, respectively, HUVEC were detached with collagenase type IV (500 U/ml; Thermo Fisher Scientific, 17104-019). For standard cell culture, propagated HUVEC passage 1 were seeded with a density of 2.2x104 cells/cm2 in 6-well cell culture plates (Techno Plastic Products AG, Trasadingen, Switzerland, 92006) that have been coated with 1 ml Cellovations® rat tail (type I) collagen solution (750 μg/ml 0.1% acetic acid). The HUVEC were fed with complete endothelial cell growth medium supplemented with a total of 1% or 5% FBS. Medium was changed the day after. Confluent monolayers were harvested two days after cell seeding. HUVEC both on collagen-coated Xellulin and on collagen-coated plastic were maintained at 37 °C in a humidified atmosphere with 5% CO2. Native HUVEC were freshly isolated from six umbilical cords and then propagated (passage 0). Ten samples HUVEC passage 1 were cultured on Xellulin and twelve samples HUVEC passage 1 in standard plastic cell culture. Sample nomenclature is given in Supplementary Table 1. Additionally, HUVEC cultivated on Xellulin for one year and for two months, respectively, were detached, propagated on plasticware and then re-seeded on Xellulin. For RNA isolation from native HUVEC, the umbilical vein was washed with DPBS (1x) w/o Ca & Mg and thereafter incubated with 5 to 7 ml RNAprotect cell reagent (Qiagen, Hilden, Germany, 76526) for two minutes. The liquid was transferred to a centrifuge tube. After another washing step with DPBS (1x) w/o Ca & Mg, HUVEC were isolated by incubation with pre-warmed (37 °C) GibcoTM dispase solution (3.6-3.8 U/ml) for one hour. All liquids were collected in one centrifuge tube. The cells were pelleted (5 min., 5,000 g) and the supernatant was discarded. For RNA isolation and purification the RNeasy Mini Kit (Qiagen, 74104) was used according to the manufacturer’s protocol. Briefly, the cell pellet was disrupted in lysis buffer. The lysate obtained was applied to QiaShredder columns (Qiagen, 79654), fully homogenized through centrifugation, and precipitated by adding 100% ethanol (Carl Roth GmbH & Co. KG, Karlsruhe, Germany, 5054.5). Afterwards, the elution procedure of the samples was done using RNeasy mini columns. The eluates were stored at -20°C until further processing. For extracting RNA from HUVEC passage 1, the cells were washed with DPBS (1x) w/o Ca & Mg and all liquid was discarded. To guard the cells from changes in their expression pattern, 600 μl RNAprotect cell reagent was added to the cells and incubated for two minutes. Cells were detached with a cell scraper and transferred into a centrifuge tube. For harvesting residual HUVEC, Xellulin and plastic surface, respectively, was washed with an additional ml of DPBS (1x) w/o Ca & Mg and the liquid was transferred to the centrifuge tube used previously. The detached cells were pelleted.

characteristic: description

text: Native HUVEC

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

characteristic: passage number

text: Homo sapiens

text: Sample 1


E-MTAB-4747:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 10

text: ArrayExpress

text: HUVEC cell

text: human

text: HUVEC grown on collagen-coated conventional cell culture plastic

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 10


E-MTAB-4747:Sample 11

text: GenXPro GmbH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4747:Sample 11

text: ArrayExpress

text: HUVEC cell

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 11


E-MTAB-4747:Sample 12

text: GenXPro GmbH

characteristic: INSDC last update

text: public

text: E-MTAB-4747:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: HUVEC cell

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 12


E-MTAB-4747:Sample 13

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 13

text: ArrayExpress

text: HUVEC cell

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 13


E-MTAB-4747:Sample 14

characteristic: ENA-LAST-UPDATE

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 14

text: ArrayExpress

text: HUVEC cell

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 14

characteristic: title


E-MTAB-4747:Sample 15

characteristic: External Id

text: GenXPro GmbH

text: public

characteristic: INSDC status

text: E-MTAB-4747:Sample 15

text: ArrayExpress

text: HUVEC cell

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 15


E-MTAB-4747:Sample 16

text: GenXPro GmbH

text: public

characteristic: SRA accession

text: E-MTAB-4747:Sample 16

text: ArrayExpress

characteristic: broker name

text: HUVEC cell

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 16


E-MTAB-4747:Sample 17

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 17

text: ArrayExpress

text: HUVEC cell

characteristic: cell type

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 17


E-MTAB-4747:Sample 18

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 18

text: ArrayExpress

text: HUVEC cell

text: human

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

characteristic: passage number

text: Homo sapiens

text: Sample 18


E-MTAB-4747:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 19

text: ArrayExpress

text: HUVEC cell

text: human

text: HUVEC grown on collagen-coated Xellulin

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 19


E-MTAB-4747:Sample 2

text: GenXPro GmbH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4747:Sample 2

text: ArrayExpress

text: HUVEC cell

text: human

text: Native HUVEC

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-4747:Sample 20

text: GenXPro GmbH

characteristic: INSDC last update

text: public

text: E-MTAB-4747:Sample 20

characteristic: Submitter Id

text: ArrayExpress

text: HUVEC cell

text: human

text: HUVEC grown on collagen-coated Xellulin

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 20


E-MTAB-4747:Sample 21

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 21

text: ArrayExpress

text: HUVEC cell

text: human

characteristic: common name

text: HUVEC grown on collagen-coated Xellulin

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 21


E-MTAB-4747:Sample 22

characteristic: ENA-LAST-UPDATE

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 22

text: ArrayExpress

text: HUVEC cell

text: human

text: HUVEC grown on collagen-coated Xellulin

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 22

characteristic: title


E-MTAB-4747:Sample 23

characteristic: External Id

text: GenXPro GmbH

text: public

characteristic: INSDC status

text: E-MTAB-4747:Sample 23

text: ArrayExpress

text: HUVEC cell

text: human

text: HUVEC grown on collagen-coated Xellulin

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 23


E-MTAB-4747:Sample 24

text: GenXPro GmbH

text: public

characteristic: SRA accession

text: E-MTAB-4747:Sample 24

text: ArrayExpress

characteristic: broker name

text: HUVEC cell

text: human

text: HUVEC grown on collagen-coated Xellulin

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 24


E-MTAB-4747:Sample 25

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 25

text: ArrayExpress

text: HUVEC cell

characteristic: cell type

text: human

characteristic: description

text: HUVEC grown on collagen-coated Xellulin

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 25


E-MTAB-4747:Sample 26

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 26

text: ArrayExpress

text: HUVEC cell

text: human

text: HUVEC grown on collagen-coated Xellulin

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

characteristic: passage number

text: Homo sapiens

text: Sample 26


E-MTAB-4747:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 27

text: ArrayExpress

text: HUVEC cell

text: human

text: HUVEC grown on collagen-coated Xellulin

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 27


E-MTAB-4747:Sample 28

text: GenXPro GmbH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4747:Sample 28

text: ArrayExpress

text: HUVEC cell

text: human

text: HUVEC grown on collagen-coated Xellulin

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 28


E-MTAB-4747:Sample 3

text: GenXPro GmbH

characteristic: INSDC last update

text: public

text: E-MTAB-4747:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: HUVEC cell

text: human

text: Native HUVEC

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 3


E-MTAB-4747:Sample 4

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 4

text: ArrayExpress

text: HUVEC cell

text: human

characteristic: common name

text: Native HUVEC

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 4


E-MTAB-4747:Sample 5

characteristic: ENA-LAST-UPDATE

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 5

text: ArrayExpress

text: HUVEC cell

text: human

text: Native HUVEC

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-4747:Sample 6

characteristic: External Id

text: GenXPro GmbH

text: public

characteristic: INSDC status

text: E-MTAB-4747:Sample 6

text: ArrayExpress

text: HUVEC cell

text: human

text: Native HUVEC

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 6


E-MTAB-4747:Sample 7

text: GenXPro GmbH

text: public

characteristic: SRA accession

text: E-MTAB-4747:Sample 7

text: ArrayExpress

characteristic: broker name

text: HUVEC cell

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 7


E-MTAB-4747:Sample 8

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 8

text: ArrayExpress

text: HUVEC cell

characteristic: cell type

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 8


E-MTAB-4747:Sample 9

text: GenXPro GmbH

text: public

text: E-MTAB-4747:Sample 9

text: ArrayExpress

text: HUVEC cell

text: human

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

characteristic: passage number

text: Homo sapiens

text: Sample 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: 10 to 12

unit: hour

characteristic: age

text: ArrayExpress

text: fruit fly

text: Protocols: The 82 genotyped lines were selected from the 205 in the DGRP collection based on three criteria: 1) including lines with the highest quality and depth of genome sequencing, 2) avoiding pairs of highly-related lines and (3) avoiding lines with unusual levels of residual heterozygosity. Freshly enclosed adults were placed in embryo collection vials, with standard apple cap plates. After three/four 1 hr pre-lays, the flies were allowed to lay for 2 hrs, after which the embryos were aged to the appropriate time-point. The embryos were then dochorionated using 50% bleach, snap frozen in liquid Nitrogen and store at -80C. ~100 embryos were homogenized with Cordless Motor for Pellet Mix and pestels (VWR) in ice. RNA was extracted in TRIzol[tm]LS (Life Technologies), digested with RNAse free DNAse I (Roche) and purified with the RNeasy mini kit (QIAGEN) according to the manufacturers' recommendations. Production of libraries containing 27bp-tags from 5' ends of capped transcripts. Taken from Takahashi et al, Nat Prot 2012. Briefly, 1-5ug of total RNA are retrotranscribed with a primer containing a common sequence followed by 15 Ns. The RNA-cDNA duplexed is subjected to in-vitro biotinylation of the 5'cap. Then the single-stranded RNA is degraded with RNaseI and the remaining biotinylated (capped) RNA-cDNA duplexes are pull-down with streptavidin-conjugated Dynabeads. cDNA is released through NaOH treatment, and then a barcoded 5'adapter is ligated to the 3'end of the single strand cDNA. Non-ligated adapter is removed by purifying twice with AMPure XP beads. Second strand is synthesized using a primer corresponding to the 5'adapter. Then, 27bp-long tags are generated by digestion with EcoP15I, a type III restriction enzyme. The two matched restriction sites are in the 5'adapter and in the RT primer sequences. A common 3'adapter is then ligated to the resulting fragments. The libraries are amplified by PCR, tipically for 8-15 cycles. After PCR, primers are removed with exonuclease treatment, and the double strand fragments are purified both with QIAquick columns and AMPure XP beads to remove unwanted adapter dimers.

text: egg laying

characteristic: initial time point

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

characteristic: strain


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: 2 to 4

text: ArrayExpress

text: fruit fly

characteristic: common name

text: egg laying

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: INSDC status

text: 6 to 8

text: ArrayExpress

text: fruit fly

text: egg laying

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Drosophila melanogaster

characteristic: title


text: BIRMINGHAM UNIVERSITY

text: public

characteristic: SRA accession

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: Nasal Swab

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR  EVOLUTIONARY BIOLOGY

text: eastern European house mouse

text: Whole Genome Resequencing from Mus musculus musculus Mazar-e-Sharif, Afghanistan; wild population

characteristic: description

text: Mus musculus musculus

text: Mus musculus musculus

text: WGS Mus musculus musculus Mazar-e-Sharif, Afghanistan


text: MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: eastern European house mouse

characteristic: common name

text: Mus musculus musculus

text: Mus musculus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANSES

text: public

characteristic: INSDC status

text: Carnobacterium divergens

characteristic: organism

text: Carnobacterium divergens

text: Carnobacterium divergens V41 genome


text: public

characteristic: SRA accession

tag: Namespace:Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Middle aged leaves of 15 individual plants per line were sampled, pooled and frozen in liquid nitrogen. Additionally, the same number of leaves of plants grown in moderate light and elevated CO2 was harvested and served as controls. This entire setup was repeated twice to obtain three biological repeats of each time-point analysed per genotype. Catalase knock-out (cat2-2) and wild-type (WT) Arabidopsis thaliana plants, ecotype Columbia-0 (Col-0), were grown under elevated CO2 concentrations (3,000 ppm) to impair photorespiration. Individual plants were organized according to a completely randomized block design in a controlled climate chamber (Votsch Industrietechnik) in a 12 h day/12 h night regime (relative humidity of 50%, 21°C and an irradiance of 100 μmol m-2 s-1). For high light (HL) treatments, 5 week-old plants were transferred to a Sanyo Fitotron plant growth chamber at dawn in ambient air conditions (400 ppm CO2, relative humidity of 55%, 21°C) and continuous HL irradiation of 1,200 μmol m-2 s-1 for 1, 2 or 3 hours. 600 μl supernatant was used for the isolation of ribosome-protected footprints. Digestion of non-protected mRNA was done by adding 1000 U of RNaseI (Thermo Fisher Scientific) followed by incubation for 55 min with gentle agitation (400 rpm) at 25°C (Thermoblock). This reaction was stopped by adding 600 U of SUPERase•InTM RNase Inhibitor (Thermo Fisher Scientific) and the reaction mixture loaded on top of a 1 M sucrose cushion in 20 mM HEPES-KOH pH 7.4, 5 mM MgCl2, 100 mM KCl, 2 mM DTT, 100 μg/ml CHX and 100 U/ml Superase.In. Ultracentrifugation was performed in a TLA-120.2 rotor at 75,000 rpm for 4 h at 4°C. The supernatant was removed and the RNA pellet was solubilized in 570 μl of 10 mM Tris HCl (pH 7) and 30 μl of 20% SDS. Samples were heated to 65°C and ribosome footprints were purified using the SDS acid phenol:chloroform:isoamyl alcohol (125:24:1) procedure. From the harvested leaf material used for proteome analysis, 2 ml was crushed in liquid nitrogen to which 2 ml of lysis buffer (10 mM Tris-HCl pH 7.4, 5 mM MgCl2, 100 mM KCl, 1%Triton X-100 with freshly added 2 mM DDT, 100 μg/ml cycloheximide (CHX) and 1 x Complete EDTA-free protease inhibitor cocktail (Roche)) was added. Samples were put on ice with frequent mixing and then filtered over paper spin cups (Pierce) by a 1 min centrifugation (4°C) at 100 x g followed by a 5 min centrifugation at 1,000 x g. Supernatants were transferred to new Eppendorf tubes, centrifuged for 15 min at 16,100 x g (4°C) and incubated on ice for 10 min. Another centrifugation step was performed at 16,100 x g and the supernatant was transferred to Eppendorf tubes. Footprints were loaded on a 15% TBE-urea denaturing PAGE gel (Thermo Fisher Scientific) and run for 65 min at 200 V for subsequent size selection (28-34 nt), after which the extracted gel fragments were dephosphorylated with 10 U of T4 polynucleotide kinase (New England Biolabs) and rRNA depleted using the Ribo-ZeroTM Magnetic Kit (Plant Leaf, Epicentre). This was followed by ligation to a universal cloning linker (New England Biolabs), reverse transcription with SuperScript III (Thermo Fisher Scientific), circularization by CircLigase (Illumina) and PCR amplification using Phusion polymerase (New England Biolabs).

characteristic: ecotype

text: catalase 2 knock out

characteristic: genetic modification

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: high light

characteristic: stimulus

characteristic: time

characteristic: title


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: thale cress

characteristic: description

text: catalase 2 knock out

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: high light


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: wild type genotype

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: high light


text: IPK-Gatersleben

text: public

characteristic: INSDC status

characteristic: SRA accession

text: domesticated barley

text: HiC library

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare

text: leave

characteristic: tissue lib


text: IPK-Gatersleben

text: public

text: domesticated barley

text: TCC library

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leave


text: GENETIC DIVERSITY CENTRE

text: public

tag: Namespace:GENETIC DIVERSITY CENTRE

text: Silene latifolia

text: Silene latifolia

text: male

characteristic: sex

text: flower buds without calyces

characteristic: tissue type


text: GENETIC DIVERSITY CENTRE

text: public

text: Silene latifolia

text: Silene latifolia

text: female

text: flower buds without calyces

characteristic: title


characteristic: ENA-CHECKLIST

text: GENETIC DIVERSITY CENTRE

text: public

text: Silene latifolia

text: Silene latifolia

text: male

text: rosette leaves


characteristic: ENA-FIRST-PUBLIC

text: GENETIC DIVERSITY CENTRE

text: public

text: Silene latifolia

text: Silene latifolia

text: female

text: rosette leaves


text: GENETIC DIVERSITY CENTRE

characteristic: INSDC center name

text: public

text: Silene latifolia

text: Silene latifolia

text: female

text: pool of different floral tissues


text: GENETIC DIVERSITY CENTRE

characteristic: INSDC first public

text: public

text: Silene latifolia

text: Silene latifolia

text: male

text: pool of different floral tissues


text: GENETIC DIVERSITY CENTRE

text: public

text: bladder campion

text: Silene vulgaris

text: Silene vulgaris

text: hermaphrodite

text: flower buds without calyces


text: GENETIC DIVERSITY CENTRE

text: public

text: bladder campion

text: Silene vulgaris

text: Silene vulgaris

text: female

text: flower buds without calyces


text: chlamydia pneumoniae

characteristic: ArrayExpress-Species

text: SC

text: public

text: chlamydia pneumoniae

text: Chlamydia pneumoniae

text: Chlamydia pneumoniae


characteristic: ENA-LAST-UPDATE

text: UoH

text: public

characteristic: collection date

text: not provided

characteristic: culture collection

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: not provided

text: not provided

text: not provided

text: not provided

text: Turkey

text: CIP 55.85

text: Turkey

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not provided

characteristic: serovar

text: CIP 55.85

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: culture collection

text: Finland

characteristic: geographic location (country and/or sea)

text: Turku

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not provided

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

text: not provided

text: not provided

text: human

text: human

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not provided

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Japan

text: not provided

text: not provided

text: human

text: human

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads

characteristic: title


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Finland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Guinea pig

characteristic: host scientific name

text: Marsu

text: Guinea pig

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: serovar

text: Marsu

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Italy

text: not provided

text: not provided

text: hare

characteristic: isolate

text: hare

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Italy

text: not provided

text: not provided

text: turkey

text: turkey

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Brazil

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: buffalo

text: buffalo

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: not provided

text: Genomic DNA sequence reads

characteristic: title


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Canada

text: not provided

text: not provided

text: human

characteristic: host scientific name

text: human

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: serovar

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Japan

text: not provided

text: not provided

text: duck

characteristic: isolate

text: duck

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Japan

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: racoon dog

text: racoon dog

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: China

text: not provided

text: not provided

text: rabbit

text: rabbit

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: not provided

text: Genomic DNA sequence reads

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Japan

text: not provided

text: not provided

text: Soil

characteristic: host scientific name

text: Soil

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: serovar

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Japan

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: cat

characteristic: isolate

text: cat

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Japan

text: not provided

text: not provided

text: racoon dog

text: racoon dog

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not provided

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Russia

text: not provided

text: not provided

text: human

text: human

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads

characteristic: title


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Russia

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: human

characteristic: host scientific name

text: human

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not provided

characteristic: serovar

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Russia

text: not provided

text: not provided

text: mus musculus

characteristic: isolate

text: mus musculus

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Russia

text: not provided

text: not provided

text: r. norvegicus

text: r. norvegicus

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not provided

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Belgium

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Human

text: Tytgat

text: Human

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: Tytgat

text: Genomic DNA sequence reads

characteristic: title


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

text: not provided

text: not provided

text: duck

characteristic: host scientific name

text: duck

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: serovar

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Japan

text: not provided

text: not provided

text: dog

characteristic: isolate

text: dog

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not provided

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Japan

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: pig

text: pig

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Russia

text: not provided

text: not provided

text: salmon

text: salmon

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Russia

text: not provided

text: not provided

text: reindeer

characteristic: host scientific name

text: reindeer

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not provided

characteristic: serovar

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: China

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Wild rat

characteristic: isolate

text: Wild rat

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Japan

text: not provided

text: not provided

text: human

text: human

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: China

text: not provided

text: not provided

text: rabbit

text: rabbit

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads

characteristic: title


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Italy

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: pigeon

characteristic: host scientific name

text: pigeon

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: serovar

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Italy

text: not provided

text: not provided

text: guinea pig

characteristic: isolate

text: guinea pig

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: New Zealand

text: not provided

text: not provided

text: deer

text: deer

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Australia

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: cow

text: cow

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads

characteristic: title


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Belgium

text: not provided

text: not provided

text: human

characteristic: host scientific name

text: Rollier

text: human

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: serovar

text: Rollier

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Germany

text: not provided

text: not provided

text: hare

characteristic: isolate

text: hare

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Human isolate

text: Human isolate

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

text: not provided

text: not provided

text: human

text: human

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Italy

text: not provided

text: not provided

text: human

characteristic: host scientific name

text: human

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: serovar

text: Genomic DNA sequence reads


text: UoH

text: public

characteristic: collection date

characteristic: culture collection

text: Russia

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: fish salmon

characteristic: isolate

text: fish salmon

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not provided

text: Genomic DNA sequence reads


characteristic: External Id

text: UoH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Belgium

text: not provided

text: not provided

text: Human

text: Human

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

characteristic: sequence type

characteristic: strain

text: Genomic DNA sequence reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Denmark

text: not provided

text: not provided

text: Canot providedry

text: Canary

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: Genomic DNA sequence reads

characteristic: title