text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and homozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TCTACGAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


status: PUBLIC

text: Pharyngula:Prim-5 - ZFS:0000029

tag: attribute

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: Mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and homozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GGTGAGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

characteristic: sample description

text: Danio rerio

text: Mixed

characteristic: strain

characteristic: title


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: Mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GCACTGTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TAGCTTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TGATACGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TAACGCTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TCAGATTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

characteristic: sample description

text: Danio rerio

text: Mixed

characteristic: strain


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TGACAGAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed

characteristic: title


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: Mixed

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GATCTCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: Mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GAGCCAAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for tfap2a, allele sa24445 and heterozygous for tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GCTAACTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GGCTACAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TGCATAGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

characteristic: sample description

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TTGGTATG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed

characteristic: strain


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: Mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TACTAGTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed

characteristic: title


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: Mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TAGAACAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GTGTCCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GCTCCTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (GATTCATC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: Mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (CTTGTACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

characteristic: sample description

text: Danio rerio

text: Mixed


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: Mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped embryo wild type for both tfap2a, allele sa24445 and tfap2c, allele sa18857 ZMP phenotype 250 clutch 1 plus ERCC spike mix 2 (Ambion). A 8 base indexing sequence (TTGACTCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph250.

text: Danio rerio

text: Mixed

characteristic: strain


text: UNIVERSITY OF NOTTINGHAM

text: public

tag: Namespace:UNIVERSITY OF NOTTINGHAM

text: tomato

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Pericarp

characteristic: tissue type

text: Tomato fruit softening

characteristic: title


characteristic: ENA-CHECKLIST

text: VETMEDUNI

text: public

text: Cardinium endosymbiont cEper1 of Encarsia pergandiella

text: Cardinium hertigii transcriptome


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI

characteristic: collection date

text: anaerobic bioreactor

characteristic: environment (biome)

text: structured-bed reactor

characteristic: environment (feature)

text: sugarcane vinasse

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: 22° 0′ 55″

unit: DD

characteristic: geographic location (latitude)

text: 47° 53′ 28″

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: bioreactor metagenome

text: Anaerobic structured-bed reactor (ASTBR) diversity analysis

characteristic: project name

text: bioreactor metagenome

text: Illumina

characteristic: sequencing method

text: ASTBR


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: anaerobic bioreactor

text: structured-bed reactor

text: sugarcane vinasse

text: Brazil

text: 22° 0′ 55″

text: 47° 53′ 28″

text: metagenome

text: bioreactor metagenome

characteristic: organism

text: bioreactor metagenome

text: Illumina

text: Sample IN


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: anaerobic bioreactor

characteristic: environment (biome)

text: structured-bed reactor

characteristic: environment (feature)

text: sugarcane vinasse

characteristic: environment (material)

text: Brazil

text: 22° 0′ 55″

text: 47° 53′ 28″

text: metagenome

text: bioreactor metagenome

text: bioreactor metagenome

text: Illumina

text: Sample UASB

characteristic: title


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (ACTTGATG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (ATCACGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Department of Molecular Microbiology John Innes Centre Norwich Research Park Norwich NR4 7UH UK

characteristic: Submitter Id

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Protocols: S. venezuelae strains were cultured in MYM-TAP according to Stuttard C. 1982. (Microbiology 128:115-121) made with 50% tap water and supplemented with 200 μl of trace element solution (Kieser T et al. 2000. Practical Streptomyces genetics. John Innes Foundation, Norwich, United Kingdom.) per 100 ml. Conjugations between E. coli and S. venezuelae were essentially carried out as described for S. coelicolor (Kieser T et al. 2000. Practical Streptomyces genetics. John Innes Foundation, Norwich, United Kingdom). However, because S. venezuelae grows much more quickly than S. coelicolor, the plates were incubated either at room temperature overnight or at 30°C for only 7 h before overlaying with the selective antibiotics. Library construction and sequencing were performed by The Genome Analysis Centre (TGAC), Norwich Research Park, Norwich, United Kingdom. The TruSeq ChIP sample preparation kit from Illumina Inc. (part 15023092, revision A, August 2012) was used according to the recommended protocol. In brief, 5 to 10 ng ChIP DNA is blunt ended and phosphorylated, and a single “A” nucleotide is added to the 3′ ends of the fragments in preparation for ligation to an adapter with a single-base “T” overhang. The ligation products are purified and accurately size selected by agarose gel electrophoresis. Size-selected DNA is then purified and PCR amplified to enrich for fragments that have adapters on both ends. The final purified product is then quantified using a combination of Bioanalyzer DNA HS Chip from Agilent Technology 2100 Bioanalyzer and Qubit 2.0 from Invitrogen. The libraries were normalized to 10 nM and pooled, and quantitative PCR (q-PCR) was performed prior to cluster generation.

characteristic: description

text: FLAG-WhiA

characteristic: genotype

text: Streptomyces venezuelae

characteristic: organism

text: Streptomyces venezuelae

text: Streptomyces venezuelae

type: has member


text: Department of Molecular Microbiology John Innes Centre Norwich Research Park Norwich NR4 7UH UK

text: public

text: ArrayExpress

text: FLAG-WhiA

text: Streptomyces venezuelae

text: Streptomyces venezuelae

text: Streptomyces venezuelae

characteristic: title


text: public

text: ArrayExpress

text: wild type genotype

text: Streptomyces venezuelae

text: Streptomyces venezuelae

text: Streptomyces venezuelae


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (CGATGTTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTAGGCAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGACCACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (ACAGTGGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: title


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCCAATGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (CAGATCTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCCGTCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGACTCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCCATTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAAGTTCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATCAGCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: title


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTACCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGCGATCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCGAAGTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGCTTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCTGTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCCTGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAACGCTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: title


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGCTACAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTGCTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGTGACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGGTATG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (CTTGTACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGGAGGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACAGGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: title


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGAACTGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGGTTGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCGAGCGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCCTCAAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACTTCGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTCGGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGATACGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: title


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTGGTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTCACGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAAGCGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, mock infected with 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGCATAGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGTCTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCAGGAGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCAGCTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: title


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCCAGTCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTATGCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCATTGAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGGCTCAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TATGCCAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCAGATTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed


text: Larval:Protruding-mouth : ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for ercc3, allele fh158, infected with Mycobacterium marinum in 2% phenol red at 48 hpf from ZMP phenotype 189 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACTAGTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph189

text: Danio rerio

text: mixed

characteristic: title


text: MUMC

text: public

characteristic: collection date

text: human

characteristic: description

text: organic material

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: NAPRUTI microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beijing Chaoyang Hospita

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Beijing Chaoyang Hospita

characteristic: Submitter Id

text: human gut

text: human gut

text: human gut

text: China

text: 39.9 N

text: 116. 3 E

text: human-gut

text: metagenome

text: metagenome

text: Dysbiosis of gut microbiota contributes to the pathogenesis of hypertension

text: metagenome

text: pyrosequencing

text: human gut


text: Beijing Chaoyang Hospita

characteristic: INSDC last update

text: public

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: human gut

characteristic: environment (material)

text: China

text: 39.9 N

text: 116. 3 E

text: human-gut

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: pyrosequencing

text: human gut

characteristic: title


text: INSERM U1170 Gustave Roussy

text: public

tag: Namespace:INSERM U1170 Gustave Roussy

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: human

characteristic: common name

text: Protocols: cutaneous biopsy was performed and fibroblasts were culture in MEM medium supplementend with 10%FBS; penicilline, streptomycine and Fungizone. DNA was extracted using Qiagen Kit The fragment ends were repaired, “A” bases were added ends of the DNA fragments and adapters were ligated to the fragments. The adapter-ligated library was amplified using 4 to 6 cycles of PCR. 500 nanograms of the sample library were hybridized with the SureSelect biotinylated RNA library for 24 hours. Bound DNA was purified using streptavidin coated magnetic beads

characteristic: description

text: Familial platelet syndrome with predisposition to acute myelogenous leukemia

characteristic: disease

text: thrombopenia

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSERM U1170 Gustave Roussy

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: hematopoietic cell

text: human

text: Protocols: total hematopoietic cells were collected from bone marrow. The T-ALL blast population represents 58% of total population DNA was extracted using Qiagen Kit The fragment ends were repaired, “A” bases were added ends of the DNA fragments and adapters were ligated to the fragments. The adapter-ligated library was amplified using 4 to 6 cycles of PCR. 500 nanograms of the sample library were hybridized with the SureSelect biotinylated RNA library for 24 hours. Bound DNA was purified using streptavidin coated magnetic beads

text: T2-acute lymphoid leukemia (T2-ALL)

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


text: INSERM U1170 Gustave Roussy

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: blood cell

text: human

text: Protocols: total peripheral blood cells were collected, AML-M0 blast cells represent 87% of total population DNA was extracted using Qiagen Kit The fragment ends were repaired, “A” bases were added ends of the DNA fragments and adapters were ligated to the fragments. The adapter-ligated library was amplified using 4 to 6 cycles of PCR. 500 nanograms of the sample library were hybridized with the SureSelect biotinylated RNA library for 24 hours. Bound DNA was purified using streptavidin coated magnetic beads

text: acute myeloid leukemia-M0 (AML-M0)

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: title


text: GIGA-R, University of Liege

text: public

tag: Namespace:GIGA-R, University of Liege

text: RNA-ligase-mediated 5' RACE to identify products of microRNA mediated cleavage of the BLV antisense transcript 1, Template used = asymptomatic BLV infected sheep

characteristic: description

text: Bovine leukemia virus

text: Bovine leukemia virus


text: GIGA-R, University of Liege

text: public

text: RNA-ligase-mediated 5' RACE to identify products of microRNA mediated cleavage of the BLV antisense transcript 1. Template used = asymptomatic cytoplasm enriched RNA from the YR2 BLV cell line

text: Bovine leukemia virus

text: Bovine leukemia virus


text: GIGA-R, University of Liege

text: public

text: RNA-ligase-mediated 5' RACE to identify products of microRNA mediated cleavage of the BLV antisense transcript 1. Template used = asymptomatic nuclear enriched RNA from the YR2 BLV cell line

text: Bovine leukemia virus

text: Bovine leukemia virus


text: GIGA-R, University of Liege

text: public

text: 5' RACE BLV antisense transcript 1

text: Bovine leukemia virus

text: Bovine leukemia virus


text: GIGA-R, University of Liege

text: public

text: 5' RACE BLV antisense transcript 2

text: Bovine leukemia virus

text: Bovine leukemia virus


text: GIGA-R, University of Liege

text: public

text: RNA-ligase-mediated 5' RACE to identify products of microRNA mediated cleavage of the BLV antisense transcript 1. Template used = RNA from the YR2 BLV cell line

text: Bovine leukemia virus

text: Bovine leukemia virus


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


characteristic: ArrayExpress-DevelopmentalStage

text: Embryo

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


E-MTAB-4676:2102Ep 3' ATLAS-seq

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4676:2102Ep 3' ATLAS-seq

tag: Namespace:Institute for Research on Cancer and Aging, Nice (IRCAN) INSERM U1081 - CNRS UMR 7284 University of Nice - Sophia-Antipolis

text: ArrayExpress

characteristic: cell line

text: embryonal carcinoma cell

characteristic: cell type

text: human

text: Protocols: Cells were collected at exponential growth. untreated Genomic DNA was extracted and prepared using QiaAmp DNA Blood mini kit (Qiagen) The protocol is described in Philippe et al. eLife 2016 (PMID 27016617). Briefly, DNA was randomly sheared by sanitation, end-repaired, and A-tailed. After ligating a linker, a suppression PCR step allowed to amplify L1HS-Ta 3' junctions and to add Ion Torrent-specific sequencing primers, as well as sample-specific DNA barcodes for multiplexed sequencing.

text: embryonal carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: 2102Ep 3' ATLAS-seq


E-MTAB-4676:2102Ep 5' ATLAS-seq

text: Institute for Research on Cancer and Aging, Nice (IRCAN) INSERM U1081 - CNRS UMR 7284 University of Nice - Sophia-Antipolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4676:2102Ep 5' ATLAS-seq

characteristic: Submitter Id

text: ArrayExpress

text: embryonal carcinoma cell

text: human

text: Protocols: Cells were collected at exponential growth. untreated Genomic DNA was extracted and prepared using QiaAmp DNA Blood mini kit (Qiagen) The protocol is described in Philippe et al. eLife 2016 (PMID 27016617). Briefly, DNA was randomly sheared by sanitation, end-repaired, and A-tailed. After ligating a linker, a suppression PCR step allowed to amplify L1HS-Ta 5' junctions and to add Ion Torrent-specific sequencing primers, as well as sample-specific DNA barcodes for multiplexed sequencing.

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: 2102Ep 5' ATLAS-seq


E-MTAB-4676:BJ 3' ATLAS-seq

text: public

text: E-MTAB-4676:BJ 3' ATLAS-seq

text: ArrayExpress

characteristic: broker name

text: BJ

text: foreskin fibroblast

text: human

characteristic: common name

characteristic: description

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: male

text: BJ 3' ATLAS-seq

characteristic: title


E-MTAB-4676:BJ 5' ATLAS-seq

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4676:BJ 5' ATLAS-seq

text: ArrayExpress

text: BJ

text: foreskin fibroblast

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: BJ 5' ATLAS-seq


E-MTAB-4676:H1 3' ATLAS-seq

characteristic: External Id

text: public

text: E-MTAB-4676:H1 3' ATLAS-seq

text: ArrayExpress

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: H1 3' ATLAS-seq


E-MTAB-4676:H1 5' ATLAS-seq

characteristic: INSDC center name

text: public

text: E-MTAB-4676:H1 5' ATLAS-seq

text: ArrayExpress

text: embryonic stem cell

text: human

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: H1 5' ATLAS-seq


E-MTAB-4676:HCT116 3' ATLAS-seq

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4676:HCT116 3' ATLAS-seq

text: ArrayExpress

text: colorectal cancer cell

text: human

text: colorectal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: HCT116 3' ATLAS-seq


E-MTAB-4676:HCT116 5' ATLAS-seq

text: public

characteristic: SRA accession

text: E-MTAB-4676:HCT116 5' ATLAS-seq

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: colorectal cancer cell

text: human

text: colorectal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: HCT116 5' ATLAS-seq


E-MTAB-4676:HEK-293 3' ATLAS-seq

text: public

text: E-MTAB-4676:HEK-293 3' ATLAS-seq

text: ArrayExpress

text: immortalized embryonic kidney cell

text: human

characteristic: common name

characteristic: description

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

text: HEK-293 3' ATLAS-seq


E-MTAB-4676:HEK-293 5' ATLAS-seq

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4676:HEK-293 5' ATLAS-seq

text: ArrayExpress

text: immortalized embryonic kidney cell

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: HEK-293 5' ATLAS-seq

characteristic: title


E-MTAB-4676:HEK-293T 3' ATLAS-seq

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4676:HEK-293T 3' ATLAS-seq

text: ArrayExpress

characteristic: cell line

text: immortalized embryonic kidney cell (transformed with SV40 Large T)

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: HEK-293T 3' ATLAS-seq


E-MTAB-4676:HEK-293T 5' ATLAS-seq

characteristic: INSDC center name

text: public

text: E-MTAB-4676:HEK-293T 5' ATLAS-seq

text: ArrayExpress

characteristic: cell type

text: human

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: HEK-293T 5' ATLAS-seq


E-MTAB-4676:HeLa S3 3' ATLAS-seq

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4676:HeLa S3 3' ATLAS-seq

text: ArrayExpress

text: cervical adenocarcinoma cell

text: human

text: cervical adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: HeLa S3 3' ATLAS-seq


E-MTAB-4676:HeLa S3 5' ATLAS-seq

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4676:HeLa S3 5' ATLAS-seq

characteristic: Submitter Id

text: ArrayExpress

text: cervical adenocarcinoma cell

text: human

text: cervical adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: HeLa S3 5' ATLAS-seq


E-MTAB-4676:HepG2 3' ATLAS-seq

text: public

text: E-MTAB-4676:HepG2 3' ATLAS-seq

text: ArrayExpress

characteristic: broker name

text: hepatocellular carcinoma cell

text: human

characteristic: common name

characteristic: description

text: hepatocellular carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: HepG2 3' ATLAS-seq


E-MTAB-4676:HepG2 5' ATLAS-seq

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4676:HepG2 5' ATLAS-seq

text: ArrayExpress

text: hepatocellular carcinoma cell

text: human

text: hepatocellular carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: male

text: HepG2 5' ATLAS-seq


E-MTAB-4676:IMR-90 3' ATLAS-seq

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4676:IMR-90 3' ATLAS-seq

text: ArrayExpress

text: lung fibroblast

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: IMR-90 3' ATLAS-seq

characteristic: title


E-MTAB-4676:IMR-90 5' ATLAS-seq

characteristic: INSDC center name

text: public

text: E-MTAB-4676:IMR-90 5' ATLAS-seq

text: ArrayExpress

characteristic: cell line

text: lung fibroblast

characteristic: cell type

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: IMR-90 5' ATLAS-seq


E-MTAB-4676:K562 3' ATLAS-seq

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4676:K562 3' ATLAS-seq

text: ArrayExpress

text: chronic myelogenous leukemia cell

text: human

text: chronic myelogenous leukemia

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: K562 3' ATLAS-seq


E-MTAB-4676:K562 5' ATLAS-seq

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4676:K562 5' ATLAS-seq

text: ArrayExpress

text: chronic myelogenous leukemia cell

text: human

text: chronic myelogenous leukemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: K562 5' ATLAS-seq


E-MTAB-4676:MCF-7 3' ATLAS-seq

text: public

text: E-MTAB-4676:MCF-7 3' ATLAS-seq

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: breast adenocarcinoma cell

text: human

characteristic: common name

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: MCF-7 3' ATLAS-seq


E-MTAB-4676:MCF-7 5' ATLAS-seq

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4676:MCF-7 5' ATLAS-seq

text: ArrayExpress

text: breast adenocarcinoma cell

text: human

characteristic: description

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: MCF-7 5' ATLAS-seq


E-MTAB-4676:MRC-5 3' ATLAS-seq

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4676:MRC-5 3' ATLAS-seq

text: ArrayExpress

text: lung fibroblast

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: male

text: MRC-5 3' ATLAS-seq


E-MTAB-4676:MRC-5 5' ATLAS-seq

characteristic: INSDC center name

text: public

text: E-MTAB-4676:MRC-5 5' ATLAS-seq

text: ArrayExpress

characteristic: cell line

text: lung fibroblast

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: MRC-5 5' ATLAS-seq

characteristic: title


characteristic: ArrayExpress-DevelopmentalStage

text: Embryo

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INRA Bordeaux-Aquitaine (Biodiversity, Genes and Communities)

characteristic: Submitter Id

text: uncultured fungus

text: uncultured fungus

text: control sample


characteristic: ENA-CHECKLIST

text: INRA Bordeaux-Aquitaine (Biodiversity, Genes and Communities)

text: public

text: uncultured fungus

text: uncultured fungus

text: foliar sample from Quercus robur


characteristic: ENA-FIRST-PUBLIC

text: public

text: uncultured fungus

text: uncultured fungus

text: foliar sample from Carpinus betulus


text: public

text: uncultured fungus

text: uncultured fungus

text: foliar sample from Vitis vinifera


text: public

text: uncultured fungus

text: uncultured fungus

text: foliar sample from Castanea sativa


text: public

text: uncultured fungus

text: uncultured fungus

text: control sample


text: public

text: uncultured fungus

text: uncultured fungus

text: forest airborne sample


text: public

text: uncultured fungus

text: uncultured fungus

text: vineyard airborne sample


E-MTAB-4684:Sample 1

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 1

tag: Namespace:Institute of Plant Genetics PAS

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Protocols: Plants of the meristem-specific INTACT reporter line were cultivated in growth chambers, in short-day (SD) conditions (8 h light/16 h dark) for 21 days and then shifted to long-day (LD) conditions (16 h light/8 h dark) to induce flowering. The growth-chamber condition was at 23°C with 65% relative humidity, and with the light at a fluence rate of 125 to 175 μmol m−2 s−1. ChIP DNA was prepared from INTACT purified nuclei from the meristem, as described in Deal, R. B. & Henikoff, S. (2010) Nat. Protoc. 6, 56-68; Adli, M. & Bernstein, B. E. (2011) Nat. Protoc. 6, 1656-1668; and You et al., unpublished Libraries were prepared from approximately 50 pg of ChIP DNA using the ThruPlex-FD Prep Kit (Rubicon Genomics)

characteristic: description

text: long day

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

characteristic: organism part

characteristic: replicate

unit: day

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 1


E-MTAB-4684:Sample 10

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Plant Genetics PAS

characteristic: INSDC center name

text: public

text: E-MTAB-4684:Sample 10

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 10

characteristic: title


E-MTAB-4684:Sample 11

text: Institute of Plant Genetics PAS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4684:Sample 11

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 11


E-MTAB-4684:Sample 12

characteristic: ENA-CHECKLIST

text: Institute of Plant Genetics PAS

text: public

characteristic: SRA accession

text: E-MTAB-4684:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 12


E-MTAB-4684:Sample 13

characteristic: ENA-FIRST-PUBLIC

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 13

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 13


E-MTAB-4684:Sample 14

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 14

text: ArrayExpress

text: thale cress

characteristic: description

text: long day

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 14


E-MTAB-4684:Sample 15

characteristic: ENA-LAST-UPDATE

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 15

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

characteristic: replicate

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 15


E-MTAB-4684:Sample 16

characteristic: External Id

text: Institute of Plant Genetics PAS

characteristic: INSDC center name

text: public

text: E-MTAB-4684:Sample 16

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 16


E-MTAB-4684:Sample 17

text: Institute of Plant Genetics PAS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4684:Sample 17

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 17

characteristic: title


E-MTAB-4684:Sample 18

characteristic: ENA-CHECKLIST

text: Institute of Plant Genetics PAS

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4684:Sample 18

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 18


E-MTAB-4684:Sample 19

characteristic: ENA-FIRST-PUBLIC

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 19

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 19


E-MTAB-4684:Sample 2

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 2

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: long day

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 2


E-MTAB-4684:Sample 20

characteristic: ENA-LAST-UPDATE

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 20

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

characteristic: organism part

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 20


E-MTAB-4684:Sample 21

characteristic: External Id

text: Institute of Plant Genetics PAS

characteristic: INSDC center name

text: public

text: E-MTAB-4684:Sample 21

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 21


E-MTAB-4684:Sample 22

text: Institute of Plant Genetics PAS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4684:Sample 22

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 22


E-MTAB-4684:Sample 23

characteristic: ENA-CHECKLIST

text: Institute of Plant Genetics PAS

text: public

characteristic: INSDC status

text: E-MTAB-4684:Sample 23

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 23

characteristic: title


E-MTAB-4684:Sample 24

characteristic: ENA-FIRST-PUBLIC

text: Institute of Plant Genetics PAS

text: public

characteristic: SRA accession

text: E-MTAB-4684:Sample 24

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 24


E-MTAB-4684:Sample 3

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 3

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 3


E-MTAB-4684:Sample 4

characteristic: ENA-LAST-UPDATE

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 4

text: ArrayExpress

text: thale cress

text: long day

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 4


E-MTAB-4684:Sample 5

characteristic: External Id

text: Institute of Plant Genetics PAS

characteristic: INSDC center name

text: public

text: E-MTAB-4684:Sample 5

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 5


E-MTAB-4684:Sample 6

text: Institute of Plant Genetics PAS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-4684:Sample 6

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 6


E-MTAB-4684:Sample 7

characteristic: ENA-CHECKLIST

text: Institute of Plant Genetics PAS

text: public

characteristic: INSDC status

text: E-MTAB-4684:Sample 7

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 7


E-MTAB-4684:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: Institute of Plant Genetics PAS

text: public

characteristic: SRA accession

text: E-MTAB-4684:Sample 8

text: ArrayExpress

text: thale cress

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 8

characteristic: title


E-MTAB-4684:Sample 9

text: Institute of Plant Genetics PAS

text: public

text: E-MTAB-4684:Sample 9

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: long day

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: apical shoot meristem

text: Arabidopsis thaliana

text: Sample 9


characteristic: ENA-LAST-UPDATE

text: DTU-GE

text: public

text: DTU-GE

text: Henrik Hasman

characteristic: collected by

characteristic: collection date

text: Denmark

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: No

characteristic: note

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU-GE

text: DTU Food

text: Denmark

text: Gallus gallus

text: Yes

text: No

text: Escherichia coli

text: Escherichia coli


text: Chryseobacterium sp. RZ4MS9

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Chryseobacterium sp. RZ4MS9

text: Chryseobacterium sp. RZ4MS9

characteristic: organism

text: Chryseobacterium sp. RZ4MS9

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Amphia Hospital

text: public

tag: Namespace:Amphia Hospital

text: J.A.J.W. Kluytmans

characteristic: collected by

text: Netherlands

characteristic: geographic location (country and/or sea)

text: chicken

characteristic: host

text: retail chicken meat

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: mcr-1 positive Enterobacteriaceae


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: description

text: Legionella pneumophila

text: Legionella pneumophila


characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

text: public

tag: Namespace:WDRC KAUST

characteristic: collection date

text: Buffer

characteristic: environment (biome)

text: Dark

characteristic: environment (feature)

text: Planktonic cells

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Escherichia coli

text: Solar inactivation

characteristic: project name

text: Escherichia coli

text: Illumina HiSeq

characteristic: sequencing method

text: DSM


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WDRC KAUST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Buffer

text: Light

text: Planktonic cells

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metatranscriptome

text: Escherichia coli

characteristic: organism

text: Solar inactivation

text: Escherichia coli

text: Illumina HiSeq

text: DSM

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col0 grown under UV0 conditions


Ovine Tumor M107

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M107

text: RNA seq reads from tumors induced by BLV in sheep mapped to BLV genome

characteristic: description

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M108

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M108

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M126

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M126

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M138

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M138

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M155

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M155

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M160

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M160

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M161

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M161

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M206

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M206

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M20PS

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M20PS

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M210

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M210

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M21PS

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M21PS

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M2233

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M2233

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M2241

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M2241

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M224

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M224

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M2311RM

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M2311RM

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M251

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M251

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M2531T

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M2531T

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M2532PS

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M2532PS

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M28PS

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M28PS

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M31Leu

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M31Leu

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M32Leu

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M32Leu

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M33Leu

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M33Leu

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M344t0

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M344t0

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M360

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M360

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M395t0

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M395t0

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M41Leu

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M41Leu

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M51

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M51

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Ovine Tumor M5578

text: GIGA-R, University of Liege

text: public

text: Ovine Tumor M5578

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Ovine Tumor


Bovine Tumor  B167

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor B167

text: RNA seq reads from tumors induced by BLV in cattle mapped to BLV genome

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Bovine Tumor B169

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor B169

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Bovine Tumor B3171

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor B3171

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Bovine Tumor B3191

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor B3191

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Bovine Tumor B3198

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor B3198

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Bovine Tumor B3261

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor B3261

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor