characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GNS

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Partial 16S rRNA gene amplicon amplified from environmental DNA collected from Tikitere, New Zealand

characteristic: description

text: New Zealand

text: soil metagenome

text: soil metagenome

text: Tikitere partial 16S rRNA metagenome


status: PUBLIC

tag: attribute

text: GNS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Partial 16S rRNA gene amplicon amplified from environmental DNA collected from Wairakei, New Zealand

text: New Zealand

characteristic: geographic location (country and/or sea)

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Wairakei partial 16S rRNA metagenome

characteristic: title

type: has member


text: GNS

text: public

text: Partial 16S rRNA gene amplicon amplified from environmental DNA collected from Waikite, New Zealand

text: New Zealand

text: soil metagenome

text: soil metagenome

text: Waikite partial 16S rRNA metagenome


text: GNS

text: public

text: Partial 16S rRNA gene amplicon amplified from environmental DNA collected from Te Kopia, New Zealand

text: New Zealand

text: soil metagenome

text: soil metagenome

text: Te Kopia partial 16S rRNA metagenome


text: ONTARIO INSTITUTE FOR CANCER RESEARCH

text: public

tag: Namespace:ONTARIO INSTITUTE FOR CANCER RESEARCH

text: human

characteristic: common name

text: Bisulfite sequencing of Coriell NA12878 cell line gDNA PCR treated then M. SssI treated

text: Homo sapiens

text: Homo sapiens

text: BS-seq NA12878 PCR treated then M. SssI treated


text: ONTARIO INSTITUTE FOR CANCER RESEARCH

text: public

text: human

text: Bisulfite sequencing of Coriell NA12878 cell line gDNA PCR treated

text: Homo sapiens

text: Homo sapiens

text: BS-seq NA12878 Coriell PCR treated


text: JAMES COOK UNIVERSIT

text: public

tag: Namespace:JAMES COOK UNIVERSIT

characteristic: collection date

unit: m

characteristic: depth

text: Landfill

characteristic: environment (biome)

text: land

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Australia

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: methane bioremediation project

characteristic: project name

text: soil metagenome

text: pyrosquencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: CSTR


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Chemistry

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Max Planck Institute for Chemistry

characteristic: Submitter Id

text: biological soil crust

characteristic: description

text: biological soil crust

text: soil

text: soil

text: Austria

text: metagenome

text: metagenome

text: Diversity and rehabilitation of prokaryotic communities of European biological soil crusts

text: metagenome

text: Illumina

text: soil

text: biocrust


text: Max Planck Institute for Chemistry

text: public

characteristic: collection date

characteristic: depth

text: biological soil crust

text: biological soil crust

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina

text: soil

text: biocrust

characteristic: title


TGo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Chemistry

characteristic: INSDC center name

text: public

text: TGo

text: biological soil crust

text: biological soil crust

text: soil

text: soil

text: Germany

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: biocrust


text: GSC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: spotted hyena

characteristic: common name

text: Crocuta crocuta

text: Grotte-aux-Ours (Souillac, Lot, France)

characteristic: origin

characteristic: sample name

text: coprolite

characteristic: sample type

text: Crocuta crocuta


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIBE-IG

text: public

text: dog

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: Breed History and Structure Predict the Utility of Canine Genome Studies

characteristic: title


characteristic: External Id

text: ED

characteristic: INSDC center name

text: public

text: Gallot's lizard

characteristic: description

text: Gallotia galloti

text: Gallotia galloti


text: Center for Genomic Medicin

characteristic: INSDC first public

text: public

tag: Namespace:Center for Genomic Medicin

text: human

text: Denmark

characteristic: geographic location (country and/or sea)

text: adult homosapiens

characteristic: germline

text: Homo sapiens

text: Homo sapiens


text: KU Leuven

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:KU Leuven

text: human

text: Homo sapiens

text: Homo sapiens


text: SC

text: public

characteristic: Submitter Id

text: Sanger Institute/Cambridge University

characteristic: biomaterial provider

text: Primary Cell

characteristic: biomaterial type

text: mature B cell

characteristic: cell type

text: house mouse

characteristic: common name

text: mature resting B cell from Blueprint_WP11_WTSI_Input_BFB (mouse strain C57BL/6J) ChIP-Seq

text: 6 - 8 weeks

characteristic: donor age

text: Female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Mus musculus

characteristic: phenotype

characteristic: pool id

text: Mus musculus

characteristic: strain

characteristic: subject id

text: Spleen

characteristic: tissue type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Sanger Institute/Cambridge University

text: Primary Cell

text: CD4-positive, alpha-beta T cell

text: house mouse

text: naive CD4 positive T cells from Blueprint_WP11_WTSI_Input_BFT (mouse strain C57BL/6J) ChIP-Seq

characteristic: description

text: 6 - 8 weeks

text: Female

text: CD4-positive_CD62L-positive_CD44-low_CD25-negative

characteristic: markers

text: genomic DNA

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Spleen

characteristic: title


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:LIVERPOOL SCHOOL OF TROPICAL MEDICINE

characteristic: Submitter Id

text: African malaria mosquito

characteristic: common name

text: Anopheles funestus pooled-template sequencing

text: Anopheles funestus

text: Anopheles funestus


CG 1

text: IMEDEA

text: public

text: CG 1

characteristic: collection date

text: Endophyte in green leaves

text: Endosphere

characteristic: environment (biome)

text: Plant

characteristic: environment (feature)

text: Tissue

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: endophyte bacterium 01

text: plant-associated

characteristic: plant-associated environmental package

text: Endophytes in halophytes

characteristic: project name

text: endophyte bacterium 01

characteristic: sequencing method

text: Campos Green 1


CG 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMEDEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CG 2

text: Endophyte in green leaves

characteristic: description

text: Endosphere

text: Plant

text: Tissue

text: Spain

text: metagenome

text: endophyte bacterium 01

characteristic: organism

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Campos Green 2

characteristic: title


CG 3

text: IMEDEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CG 3

characteristic: Submitter Id

characteristic: collection date

text: Endophyte in green leaves

text: Endosphere

characteristic: environment (biome)

text: Plant

characteristic: environment (feature)

text: Tissue

characteristic: environment (material)

text: Spain

text: metagenome

text: endophyte bacterium 01

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Campos Green 3


AG 1

characteristic: ENA-CHECKLIST

text: IMEDEA

text: public

text: AG 1

text: Endophyte in green leaves

text: Endosphere

text: Plant

text: Tissue

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: endophyte bacterium 01

text: plant-associated

characteristic: plant-associated environmental package

text: Endophytes in halophytes

characteristic: project name

text: endophyte bacterium 01

characteristic: sequencing method

text: Alcudia Green 1


AG 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMEDEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: AG 2

text: Endophyte in green leaves

characteristic: description

text: Endosphere

text: Plant

text: Tissue

text: Spain

text: metagenome

text: endophyte bacterium 01

characteristic: organism

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Alcudia Green 2

characteristic: title


AG 3

text: IMEDEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AG 3

characteristic: Submitter Id

characteristic: collection date

text: Endophyte in green leaves

text: Endosphere

characteristic: environment (biome)

text: Plant

characteristic: environment (feature)

text: Tissue

characteristic: environment (material)

text: Spain

text: metagenome

text: endophyte bacterium 01

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Alcudia Green 3


CRE 1

characteristic: ENA-CHECKLIST

text: IMEDEA

text: public

text: CRE 1

text: Endophytes in red leaves

text: Endosphere

text: Plant

text: Tissue

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: endophyte bacterium 01

text: plant-associated

characteristic: plant-associated environmental package

text: Endophytes in halophytes

characteristic: project name

text: endophyte bacterium 01

characteristic: sequencing method

text: Campos red 1


CRE 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMEDEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CRE 2

text: Endophytes in red leaves

characteristic: description

text: Endosphere

text: Plant

text: Tissue

text: Spain

text: metagenome

text: endophyte bacterium 01

characteristic: organism

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Campos red 2

characteristic: title


CRE 3

text: IMEDEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CRE 3

characteristic: Submitter Id

characteristic: collection date

text: Endophytes in red leaves

text: Endosphere

characteristic: environment (biome)

text: Plant

characteristic: environment (feature)

text: Tissue

characteristic: environment (material)

text: Spain

text: metagenome

text: endophyte bacterium 01

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Campos red 3


ARE 1

characteristic: ENA-CHECKLIST

text: IMEDEA

text: public

text: ARE 1

text: Endophytes in red leaves

text: Endosphere

text: Plant

text: Tissue

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: endophyte bacterium 01

text: plant-associated

characteristic: plant-associated environmental package

text: Endophytes in halophytes

characteristic: project name

text: endophyte bacterium 01

characteristic: sequencing method

text: Alcudia red 1


ARE 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMEDEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ARE 2

text: Endophytes in red leaves

characteristic: description

text: Endosphere

text: Plant

text: Tissue

text: Spain

text: metagenome

text: endophyte bacterium 01

characteristic: organism

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Alcudia red 2

characteristic: title


ARE 3

text: IMEDEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ARE 3

characteristic: Submitter Id

characteristic: collection date

text: Endophytes in red leaves

text: Endosphere

characteristic: environment (biome)

text: Plant

characteristic: environment (feature)

text: Tissue

characteristic: environment (material)

text: Spain

text: metagenome

text: endophyte bacterium 01

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Alcudia red 3


CRO 1

characteristic: ENA-CHECKLIST

text: IMEDEA

text: public

text: CRO 1

text: Endophytes in root

text: Endosphere

text: Plant

text: Tissue

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: endophyte bacterium 01

text: plant-associated

characteristic: plant-associated environmental package

text: Endophytes in halophytes

characteristic: project name

text: endophyte bacterium 01

characteristic: sequencing method

text: Campos root 1


CRO 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMEDEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CRO 2

text: Endophytes in root

characteristic: description

text: Endosphere

text: Plant

text: Tissue

text: Spain

text: metagenome

text: endophyte bacterium 01

characteristic: organism

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Campos root 2

characteristic: title


CRO 3

text: IMEDEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CRO 3

characteristic: Submitter Id

characteristic: collection date

text: Endophytes in root

text: Endosphere

characteristic: environment (biome)

text: Plant

characteristic: environment (feature)

text: Tissue

characteristic: environment (material)

text: Spain

text: metagenome

text: endophyte bacterium 01

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Campos root 3


ARO 1

characteristic: ENA-CHECKLIST

text: IMEDEA

text: public

text: ARO 1

text: Endophytes in root

text: Endosphere

text: Plant

text: Tissue

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: endophyte bacterium 01

text: plant-associated

characteristic: plant-associated environmental package

text: Endophytes in halophytes

characteristic: project name

text: endophyte bacterium 01

characteristic: sequencing method

text: Alcudia root 1


ARO 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMEDEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ARO 2

text: Endophytes in root

characteristic: description

text: Endosphere

text: Plant

text: Tissue

text: Spain

text: metagenome

text: endophyte bacterium 01

characteristic: organism

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Alcudia root 2

characteristic: title


ARO 3

text: IMEDEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ARO 3

characteristic: Submitter Id

characteristic: collection date

text: Endophytes in root

text: Endosphere

characteristic: environment (biome)

text: Plant

characteristic: environment (feature)

text: Tissue

characteristic: environment (material)

text: Spain

text: metagenome

text: endophyte bacterium 01

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Alcudia root 3


C 1

characteristic: ENA-CHECKLIST

text: IMEDEA

text: public

text: C 1

text: Rhizospheric soil

text: Endosphere

text: Plant

text: Tissue

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: endophyte bacterium 01

text: plant-associated

characteristic: plant-associated environmental package

text: Endophytes in halophytes

characteristic: project name

text: endophyte bacterium 01

characteristic: sequencing method

text: Campos rhizosphere 1


C 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMEDEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: C 2

text: Rhizospheric soil

characteristic: description

text: Endosphere

text: Plant

text: Tissue

text: Spain

text: metagenome

text: endophyte bacterium 01

characteristic: organism

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Campos rhizosphere 2

characteristic: title


C 3

text: IMEDEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: C 3

characteristic: Submitter Id

characteristic: collection date

text: Rhizospheric soil

text: Endosphere

characteristic: environment (biome)

text: Plant

characteristic: environment (feature)

text: Tissue

characteristic: environment (material)

text: Spain

text: metagenome

text: endophyte bacterium 01

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Campos rhizosphere 3


A 1

characteristic: ENA-CHECKLIST

text: IMEDEA

text: public

text: A 1

text: Rhizospheric soil

text: Endosphere

text: Plant

text: Tissue

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: endophyte bacterium 01

text: plant-associated

characteristic: plant-associated environmental package

text: Endophytes in halophytes

characteristic: project name

text: endophyte bacterium 01

characteristic: sequencing method

text: Alcudia rhizosphere 1


A 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMEDEA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: A 2

text: Rhizospheric soil

characteristic: description

text: Endosphere

text: Plant

text: Tissue

text: Spain

text: metagenome

text: endophyte bacterium 01

characteristic: organism

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Alcudia rhizosphere 2

characteristic: title


A 3

text: IMEDEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: A 3

characteristic: Submitter Id

characteristic: collection date

text: Rhizospheric soil

text: Endosphere

characteristic: environment (biome)

text: Plant

characteristic: environment (feature)

text: Tissue

characteristic: environment (material)

text: Spain

text: metagenome

text: endophyte bacterium 01

text: plant-associated

text: Endophytes in halophytes

text: endophyte bacterium 01

text: Alcudia rhizosphere 3


characteristic: ENA-CHECKLIST

text: SCIENCE FOR LIFE LABORATORY

text: public

tag: Namespace:SCIENCE FOR LIFE LABORATORY

text: Healthy control

characteristic: diagnosis

text: Sweden

characteristic: geographic location (country and/or sea)

text: Stockholm

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

characteristic: isolate

characteristic: mating type

text: Malassezia sympodialis

text: Malassezia sympodialis

text: Malassezia sympodialis isolate KS004


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SCIENCE FOR LIFE LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Healthy control

text: Sweden

text: Stockholm

text: Homo sapiens

text: Malassezia sympodialis

characteristic: organism

text: Malassezia sympodialis

text: Malassezia sympodialis isolate KS024


text: SCIENCE FOR LIFE LABORATORY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Atopic eczema

text: Sweden

text: Stockholm

text: Homo sapiens

text: Malassezia sympodialis

text: Malassezia sympodialis

text: Malassezia sympodialis isolate KS327

characteristic: title


characteristic: ENA-CHECKLIST

text: UBO

text: public

text: Cryptococcus sp.

characteristic: description

text: Cryptococcus sp. 05/00

text: Cryptococcus sp. 05/00

text: UBOCC 208024


text: public

tag: Namespace:Federal Research and Clinical Centre of Physical-Chemical Medicine

characteristic: collection date

text: human gut metagenome, Russia, SPB

text: human-associated habitat

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: russian metagenome

characteristic: project name

text: human gut metagenome

text: ABI-solid

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Federal Research and Clinical Centre of Physical-Chemical Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human-associated habitat

text: gut

text: feces

text: Russia

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: russian metagenome

text: human gut metagenome

text: ABI-solid


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

tag: Namespace:University of Zagreb, Faculty of Food Technology and Biotechnology

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: marine

characteristic: environment (biome)

text: bay

characteristic: environment (feature)

text: sediment

text: Croatia

characteristic: geographic location (elevation)

text: 44°51'59.9940 N

text: 13°50'25.4400 E

text: metagenome

text: marine metagenome

text: Redpet

text: marine metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Marine sediment metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Zagreb, Faculty of Food Technology and Biotechnology

text: public

text: marine

text: bay

text: sediment

characteristic: environment (material)

text: Croatia

characteristic: geographic location (country and/or sea)

text: 45°03'44.2440 N

characteristic: geographic location (latitude)

text: 13°39'08.3736 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine metagenome

text: Redpet

characteristic: project name

text: marine metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: Marine sediment metagenome


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: bay

text: sediment

text: Croatia

text: 45°16'34.9140 N

text: 14°32'58.7544 E

text: metagenome

text: marine metagenome

characteristic: organism

text: Redpet

text: marine metagenome

text: sediment

text: pyrosequencing

text: Marine sediment metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: Protocols: Wildtype Drosophila melanogaster (Twist-H2B) flies were grown in population cages at 25 degr. Staged 2 hr populations of embryos were collected and aged at 25 degr till the required stage of development. Two independent collections were performed for each timepoint. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 1.8 % formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. A small number of embryos from each collections was set aside to stage each collection. Fixed mesodermal nuclei were isolated and used subsequently to perform chromatin immunoprecipitation as previously described by Bonn and colleagues (Cell type-specific chromatin immuno precipitation from multicellular complex samples using BiTS-ChIP, Nat Prot, 2012). Briefly, whole embryos were homogenized and pushed through the needles to extract nuclei. Nuclei were stained with alpha-SBP antibody generated in mouse that recognizes SBP-tagged histone H2B. Subsequently, nuclei were stained with secondary antibody alpha-mouse Alexa Fluor 488, which was used to separate mesodermal fixed nuclei using Fluorescence Activated Cell Sorting (FACS) with purity greater than 95%. Several sorts were pulled together to obtain sufficient amount of material. Chromatin was sheared to 200 bp with Bioruptor and used to perform imunoprecipitation (IP) as previously described in Sandmann et al. (Nat Prot, 2006) with antibodies (generous gifts from Joerg Mueller recognizing Pho (2-382 aa) on 4-6h and 6-8h, or dSfmbt (531-980 aa) on 6-8h material. The Extraction is part of IP described in the sample's ChIP protocol NGS libraries were prepared as previously described by Bonn and colleagues (Cell type-specific chromatin immuno precipitation from multicellular complex samples using BiTS-ChIP, Nat Prot, 2012).

characteristic: description

text: egg laying

characteristic: initial time point

text: Drosophila melanogaster

text: Drosophila melanogaster

text: mesoderm

characteristic: organism part

text: Drosophila melanogaster

text: mixed sex

characteristic: sex

characteristic: strain

characteristic: title

type: derived from


MARC P2a-Lab15

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MARC P2a-Lab15

tag: Namespace:THE WALTER AND ELIZA HALL INSTITUTE OF MEDICAL RESEARCH

text: Escherichia coli K-12

characteristic: reference URL

characteristic: reference id

text: Escherichia coli K-12


text: Salmonella enterica subsp. enterica serovar Typhi str. CT18

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: organism


text: Salmonella enterica Typhimurium str. SL1344

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: common name

text: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344


text: public

tag: Namespace:Institute of Bioinformatics and Systems Biology

text: Ustilago bromivora is a biotrophic pathogenic fungus belonging to the group of head smuts. It infects the model grass Brachypodium distachyon and causes visible symptoms in the late stages of the plant development were infected spikelets are converted to smut sori. The well-established model smut fungus Ustilago maydis has been previously shown to be a useful to study aspects of biotrophic pathogenic fungi in general.

characteristic: description

text: Ustilago bromivora

text: Ustilago bromivora

characteristic: strain

text: The genome sequence of Ustilago bromivora UB2112


characteristic: ENA-CHECKLIST

text: IPK-Gatersleben

text: public

text: rye

text: Secale cereale

text: Secale cereale

text: Rye WGS

characteristic: title


text: Staphylococcus aureus

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UCSDMI

characteristic: INSDC first public

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:food product

characteristic: env feature

text: ENVO:fermented food product

characteristic: env matter

text: kimchi

text: True

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Fermented Food

characteristic: sample type

text: food fermentation metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:food product

text: ENVO:fermented food product

text: curtido

text: True

text: food fermentation metagenome

characteristic: organism

text: UCSDMI

text: true

text: True

text: completed

text: Fermented Food

text: food fermentation metagenome

text: American Gut Project

characteristic: title


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:food product

characteristic: env feature

text: ENVO:fermented food product

characteristic: env matter

text: water kefir

text: True

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

text: completed

text: Fermented Food

text: food fermentation metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:food product

text: ENVO:fermented food product

text: edible alchemy sauerkraut

text: True

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Fermented Food

characteristic: sample type

text: food fermentation metagenome

text: American Gut Project


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:food product

characteristic: env feature

text: ENVO:fermented food product

characteristic: env matter

text: miso

text: True

characteristic: host subject id

text: food fermentation metagenome

characteristic: organism

text: UCSDMI

text: true

text: True

text: completed

text: Fermented Food

text: food fermentation metagenome

text: American Gut Project

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:food product

text: ENVO:fermented food product

text: dairy kefir

text: True

characteristic: latitude

characteristic: longitude

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

text: completed

text: Fermented Food

text: food fermentation metagenome

text: American Gut Project


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:food product

characteristic: env feature

text: ENVO:fermented food product

characteristic: env matter

text: sauerkraut

text: True

characteristic: host subject id

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Fermented Food

characteristic: sample type

text: food fermentation metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: animal age

text: Cat

characteristic: animal type

text: sometimes consumes raw milk

text: Female

text: Home

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: oral metagenome

characteristic: common name

text: Never

characteristic: coprophage

text: American Gut Project Animal sample

characteristic: description

text: Carnivore

characteristic: diet

text: true

text: ENVO:dense settlement biome

text: ENVO:animal-associated habitat

text: ENVO:saliva

text: Both

characteristic: food type

text: true

text: true

text: false

text: true

text: true

text: false

text: false

text: True

characteristic: host taxid

text: Less than 2

text: 59M, 39F, 26F, 32F, 29M

text: Lives alone with humans

text: maggie

characteristic: name

text: oral metagenome

characteristic: organism

text: UCSDMI

text: true

text: True

text: completed

text: Mouth

text: oral metagenome

text: Urban

characteristic: setting

text: American Gut Project

characteristic: title

text: Never

text: Normal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: freshwater metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:constructed feature

characteristic: env feature

text: ENVO:water

characteristic: env matter

text: tap water

text: True

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: freshwater metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Water

characteristic: sample type

text: freshwater metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:food product

text: ENVO:fermented food product

text: kombucha

text: True

text: food fermentation metagenome

characteristic: organism

text: UCSDMI

text: true

text: True

text: completed

text: Fermented Food

text: food fermentation metagenome

text: American Gut Project

characteristic: title


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:food product

characteristic: env feature

text: ENVO:fermented food product

characteristic: env matter

text: beet kvass

text: True

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

text: completed

text: Fermented Food

text: food fermentation metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:food product

text: ENVO:fermented food product

text: fermented grape soda

text: True

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Fermented Food

characteristic: sample type

text: food fermentation metagenome

text: American Gut Project


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:food product

characteristic: env feature

text: ENVO:fermented food product

characteristic: env matter

text: beer

text: True

characteristic: host subject id

text: food fermentation metagenome

characteristic: organism

text: UCSDMI

text: true

text: True

text: completed

text: Fermented Food

text: food fermentation metagenome

text: American Gut Project

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: indoor metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:surface layer

text: ENVO:dust

text: True

text: refrigerator

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: UCSDMI

text: true

text: True

text: completed

text: Indoor Surface

text: indoor metagenome

text: American Gut Project


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: indoor metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:surface layer

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: True

characteristic: host subject id

text: wood cutting board

text: indoor metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Indoor Surface

characteristic: sample type

text: indoor metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: indoor metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:surface layer

text: ENVO:dust

text: True

text: plastic cutting board

text: indoor metagenome

characteristic: organism

text: UCSDMI

text: true

text: True

text: completed

text: Indoor Surface

text: indoor metagenome

text: American Gut Project

characteristic: title


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: indoor metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:surface layer

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: True

characteristic: host subject id

text: kitchen counter

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: UCSDMI

text: true

text: True

text: completed

text: Indoor Surface

text: indoor metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:food product

text: ENVO:fermented food product

text: port wine

text: True

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Fermented Food

characteristic: sample type

text: food fermentation metagenome

text: American Gut Project


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:food product

characteristic: env feature

text: ENVO:fermented food product

characteristic: env matter

text: pickled jalapenos

text: True

characteristic: host subject id

text: food fermentation metagenome

characteristic: organism

text: UCSDMI

text: true

text: True

text: completed

text: Fermented Food

text: food fermentation metagenome

text: American Gut Project

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:food product

text: ENVO:fermented food product

text: cottage cheese

text: True

characteristic: latitude

characteristic: longitude

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

text: completed

text: Fermented Food

text: food fermentation metagenome

text: American Gut Project


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:food product

characteristic: env feature

text: ENVO:fermented food product

characteristic: env matter

text: pickles

text: True

characteristic: host subject id

text: food fermentation metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Fermented Food

characteristic: sample type

text: food fermentation metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: indoor metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:surface layer

text: ENVO:dust

text: True

text: cast iron skillet

text: indoor metagenome

characteristic: organism

text: UCSDMI

text: true

text: True

text: completed

text: Indoor Surface

text: indoor metagenome

text: American Gut Project

characteristic: title


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: indoor metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:surface layer

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: True

characteristic: host subject id

text: inside fermenter wall

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: UCSDMI

text: true

text: True

text: completed

text: Indoor Surface

text: indoor metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:surface layer

text: ENVO:dust

text: True

text: kegerator tap

text: indoor metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Indoor Surface

characteristic: sample type

text: indoor metagenome

text: American Gut Project


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: biofilm metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:surface layer

characteristic: env feature

text: ENVO:biofilm

characteristic: env matter

text: scoby

text: True

characteristic: host subject id

text: biofilm metagenome

characteristic: organism

text: UCSDMI

text: true

text: True

text: completed

text: Biofilm

text: biofilm metagenome

text: American Gut Project

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: true

text: January

text: Winter

text: 1/26/16 0:00

text: food fermentation metagenome

characteristic: common name

text: American Gut environmental sample

characteristic: description

text: true

text: ENVO:dense settlement biome

text: ENVO:surface layer

text: ENVO:dust

text: True

text: kegerator tray

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: UCSDMI

text: true

text: True

text: completed

text: Indoor Surface

text: indoor metagenome

text: American Gut Project


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: true

characteristic: collection date

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 1/26/16 0:00

text: indoor metagenome

characteristic: depth

text: American Gut environmental sample

text: true

characteristic: elevation

text: ENVO:dense settlement biome

characteristic: env biome

text: ENVO:surface layer

characteristic: env feature

text: ENVO:dust

characteristic: env matter

text: True

characteristic: host subject id

text: fermenter spigot

text: indoor metagenome

text: UCSDMI

text: true

text: True

characteristic: public

text: completed

text: Indoor Surface

characteristic: sample type

text: indoor metagenome

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: YALE SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:YALE SCHOOL OF MEDICINE

characteristic: Submitter Id

text: Norway rat

characteristic: common name

text: Chow_Donor_Fec_D0 Feces, day 0. Donor rat, chow fed DC1.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body product

text: Feces

characteristic: host body site

text: Rat

characteristic: host common name

text: Chow: Harlan 2018

characteristic: host diet

text: male

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Donor: N/A

characteristic: miscellaneous parameter

text: Rattus norvegicus

characteristic: organism

text: Acetate mediates a gut microbiota - brain - β cell axis to promote obesity and the metabolic syndrome

characteristic: project name

text: Rattus norvegicus

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Fecal sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: YALE SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Norway rat

characteristic: common name

text: CC_Recip_Fec_D0 Feces, day 0. Recipient rat, chow fed FCC21.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Feces

text: Feces

text: Rat

text: male

text: host-associated

text: mimarks-survey

text: Rattus norvegicus

text: Rattus norvegicus

text: Illumina MiSeq

text: 16S rRNA

text: Fecal sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: YALE SCHOOL OF MEDICINE

text: public

text: Norway rat

text: USA

characteristic: geographic location (longitude)

text: Feces

characteristic: host body product

text: Feces

characteristic: host body site

text: Rat

characteristic: host common name

text: Chow: Harlan 2018

characteristic: host diet

text: male

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Rattus norvegicus

characteristic: organism

characteristic: project name

text: Rattus norvegicus

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Fecal sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: YALE SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Norway rat

characteristic: common name

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Feces

text: Feces

text: Rat

text: High Fat: Dyets 112245

text: male

text: host-associated

text: mimarks-survey

text: Rattus norvegicus

text: Rattus norvegicus

text: Illumina MiSeq

text: 16S rRNA

text: Fecal sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: DEU

tag: Namespace:JUSTUS LIEBIG UNIVERSITAT

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Turkey hen meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: mcr-1 encoding isolates from retail food

characteristic: title

type: AMR curated data - CABBAGE

value: imipenem

value: broth dilution

value: mg/L

value: Escherichia coli

value: trimethoprim-sulfamethoxazole

value: tetracycline

value: cefpodoxime

value: cefuroxime

value: amikacin

value: tigecycline

value: moxifloxacin

value: piperacillin

value: aztreonam

value: cefotaxime

value: ciprofloxacin

value: fosfomycin

value: meropenem

value: ampicillin

value: cefepime

value: ceftazidime

value: ertapenem

value: gentamicin

value: piperacillin-tazobactam


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KI-BN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: HOXB13 LoVo ChIP exo

text: Homo sapiens

text: Homo sapiens

text: HOXB13 LoVo ChIP exo


text: KI-BN

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: MEIS1 293FT ChIP exo

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: MEIS1 293FT ChIP exo


Aulacidea tavakolii1

characteristic: ENA-CHECKLIST

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Aulacidea tavakolii1

tag: Namespace:INSTITUTE OF EVOLUTIONARY BIOLOGY

text: Aulacidea tavakolii

text: Aulacidea tavakolii

text: Gallwasp phylogenomics


Aulacidea tavakolii2

characteristic: ENA-FIRST-PUBLIC

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Aulacidea tavakolii2

text: Aulacidea tavakolii

text: Aulacidea tavakolii

text: Gallwasp phylogenomics


Diastrophus kincaidii1

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Diastrophus kincaidii1

text: Diastrophus kincaidii

text: Diastrophus kincaidii

text: Gallwasp phylogenomics


Diastrophus kincaidii2

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Diastrophus kincaidii2

text: Diastrophus kincaidii

text: Diastrophus kincaidii

text: Gallwasp phylogenomics


text: Brevundimonas vesicularis

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Brevundimonas vesicularis

text: Brevundimonas vesicularis

text: Brevundimonas vesicularis

characteristic: strain


Isocolus centaureae1

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Isocolus centaureae1

text: Isocolus centaureae

characteristic: organism

text: Isocolus centaureae

text: Gallwasp phylogenomics


Isocolus centaureae2

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Isocolus centaureae2

text: Isocolus centaureae

text: Isocolus centaureae

text: Gallwasp phylogenomics

characteristic: title


Alloxysta arcuata1

characteristic: ENA-LAST-UPDATE

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Alloxysta arcuata1

text: Alloxysta arcuata

text: Alloxysta arcuata

text: Gallwasp phylogenomics


Alloxysta arcuata2

characteristic: External Id

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Alloxysta arcuata2

text: Alloxysta arcuata

text: Alloxysta arcuata

text: Gallwasp phylogenomics


Callaspidia notata1

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

characteristic: INSDC center name

text: public

text: Callaspidia notata1

text: Callaspidia notata

text: Callaspidia notata

text: Gallwasp phylogenomics


Ceroptres masudai1

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

characteristic: INSDC first public

text: public

text: Ceroptres masudai1

text: Ceroptres masudai

text: Ceroptres masudai

text: Ceroptres masudai


Ceroptres masudai2

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

characteristic: INSDC last update

text: public

text: Ceroptres masudai2

text: Ceroptres masudai

text: Ceroptres masudai

text: Ceroptres masudai


Phanacis sp.1

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

characteristic: INSDC status

text: Phanacis sp.1

text: Phanacis sp. JH-2016

text: Phanacis sp. JH-2016

text: Gallwasp phylogenomics


Phanacis sp.2

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

characteristic: SRA accession

text: Phanacis sp.2

text: Phanacis sp. JH-2016

text: Phanacis sp. JH-2016

text: Gallwasp phylogenomics


Periclistus sp. 1

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Periclistus sp. 1

characteristic: Submitter Id

text: Periclistus sp. JH-2016

text: Periclistus sp. JH-2016

text: Gallwasp phylogenomics


Periclistus sp. 2

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Periclistus sp. 2

text: Periclistus sp. JH-2016

text: Periclistus sp. JH-2016

text: Gallwasp phylogenomics


Drinking water SG0.20 metagenome1

text: THE UNIVERSITY OF HONG KONG

text: public

text: Drinking water SG0.20 metagenome1

tag: Namespace:THE UNIVERSITY OF HONG KONG

characteristic: collection date

text: Drinking water system

characteristic: environment (biome)

text: drinking water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Singapore

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: freshwater metagenome

characteristic: project name

text: freshwater metagenome

text: Illumina Hiseq 4000

characteristic: sequencing method

text: Drinking water SG0.20 metagenome


Diplolepis spinosa1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

characteristic: INSDC center name

text: public

text: Diplolepis spinosa1

text: Diplolepis spinosa

characteristic: organism

text: Diplolepis spinosa

text: Gallwasp phylogenomics

characteristic: title


Diplolepis spinosa2

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Diplolepis spinosa2

characteristic: Submitter Id

text: Diplolepis spinosa

text: Diplolepis spinosa

text: Gallwasp phylogenomics


Diplolepis spinosa3

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Diplolepis spinosa3

text: Diplolepis spinosa

text: Diplolepis spinosa

text: Gallwasp phylogenomics


Diplolepis spinosa4

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Diplolepis spinosa4

text: Diplolepis spinosa

text: Diplolepis spinosa

text: Gallwasp phylogenomics


Diplolepis spinosa5

text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

text: Diplolepis spinosa5

text: Diplolepis spinosa

text: Diplolepis spinosa

text: Gallwasp phylogenomics


text: PHE

text: public

characteristic: MLST

text: Wessex

characteristic: PHE Centre

text: Scarlet Fever Sample

characteristic: description

text: streptococcus pyogenes

text: SF

characteristic: phenotype

characteristic: sample date

text: streptococcus pyogenes


characteristic: ENA-CHECKLIST

text: PHE

text: public

text: Devon Cornwall and Somerset

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


characteristic: ENA-FIRST-PUBLIC

text: PHE

text: public

text: Cumbria and Lancashire

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


characteristic: ENA-LAST-UPDATE

text: PHE

text: public

text: London

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


characteristic: External Id

text: PHE

text: public

text: Kent Surrey and Sussex

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


text: PHE

characteristic: INSDC center name

text: public

text: Avon Gloucestershire and Wiltshire

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


text: PHE

text: public

text: West Midlands

text: Scarlet Fever Sample

text: streptococcus pyogenes

characteristic: organism

text: SF

text: streptococcus pyogenes


text: PHE

text: public

text: Yorkshire and Humber

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes

characteristic: title


text: PHE

characteristic: INSDC first public

text: public

text: Greater Manchester

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


text: PHE

characteristic: INSDC last update

text: public

text: North East

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


text: PHE

text: public

characteristic: INSDC status

text: Cheshire and Merseyside

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


text: PHE

text: public

text: South Midlands and Hertfordshire

characteristic: SRA accession

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


text: PHE

text: public

text: Anglia and Essex

characteristic: Submitter Id

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


text: PHE

text: public

characteristic: MLST

text: East Midlands

text: Scarlet Fever Sample

text: streptococcus pyogenes

text: SF

text: streptococcus pyogenes


text: PHE

text: public

text: Yorkshire and Humber

characteristic: PHE Centre

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


text: PHE

text: public

text: Wales

text: invasive GAS sample

characteristic: description

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


text: PHE

text: public

text: West Midlands

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

characteristic: phenotype

text: streptococcus pyogenes


text: PHE

text: public

text: East Midlands

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

characteristic: sample date

text: streptococcus pyogenes


characteristic: ENA-CHECKLIST

text: PHE

text: public

text: South Midlands and Hertfordshire

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


characteristic: ENA-FIRST-PUBLIC

text: PHE

text: public

text: Thames Valley

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


characteristic: ENA-LAST-UPDATE

text: PHE

text: public

text: Kent Surrey and Sussex

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


characteristic: External Id

text: PHE

text: public

text: Wessex

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


text: PHE

characteristic: INSDC center name

text: public

text: Avon Gloucestershire and Wiltshire

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


text: PHE

text: public

text: Devon Cornwall and Somerset

text: invasive GAS sample

text: streptococcus pyogenes

characteristic: organism

text: iGAS

text: streptococcus pyogenes


text: PHE

text: public

text: London

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes

characteristic: title


text: PHE

characteristic: INSDC first public

text: public

text: Cheshire and Merseyside

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


text: PHE

characteristic: INSDC last update

text: public

text: North East

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


text: PHE

text: public

characteristic: INSDC status

text: Cumbria and Lancashire

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


text: PHE

text: public

text: Greater Manchester

characteristic: SRA accession

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


text: PHE

text: public

text: Anglia and Essex

characteristic: Submitter Id

text: invasive GAS sample

text: streptococcus pyogenes

text: iGAS

text: streptococcus pyogenes


text: MPI-TUEBINGEN

text: public

text: thale cress

characteristic: common name

text: adult plant

characteristic: dev stage

characteristic: ecotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaves

characteristic: tissue type


text: Biodiversity Institute of Ontario

text: public

tag: Namespace:Biodiversity Institute of Ontario

text: Plant and fungal ITS2

characteristic: description

text: metagenome

text: metagenome

text: BIO-Herbal-NGS


tag: attribute

characteristic: ENA-CHECKLIST

text: THE UNIVERSITY OF HONG KONG

text: public

characteristic: collection date

text: Drinking water system

characteristic: environment (biome)

text: drinking water

characteristic: environment (feature)

text: freshwater

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: freshwater metagenome

characteristic: project name

text: freshwater metagenome

text: Illumina HiSeq 4000

characteristic: sequencing method

text: Drinking water HN0.45 metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

characteristic: Submitter Id

text: Nasopharyngeal swab

characteristic: bio material

text: Respiratory virus detection in human upper respiratory tract specimens by RNA-seq

text: Human coronavirus HKU1

characteristic: organism

text: Human coronavirus HKU1

characteristic: strain

text: Respiratory virus detection by RNA-seq

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

characteristic: description

text: Human coronavirus NL63

text: Human coronavirus NL63

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Human coronavirus OC43

text: Human coronavirus OC43

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Enterovirus B

text: Enterovirus B

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Human bocavirus 1

text: Human bocavirus 1

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Human metapneumovirus

text: Human metapneumovirus

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Rhinovirus C

text: Rhinovirus C

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Human parainfluenza virus 1

text: Human parainfluenza virus 1

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Human parainfluenza virus 3

text: Human parainfluenza virus 3

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Rhinovirus A

text: Rhinovirus A

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Respiratory syncytial virus

text: Respiratory syncytial virus

text: Respiratory virus detection by RNA-seq


text: UNIVERSITY OF UTAH, SCHOOL OF MEDICINE

text: public

text: Nasopharyngeal swab

text: Respiratory syncytial virus

text: Respiratory syncytial virus

text: Respiratory virus detection by RNA-seq


text: public

tag: Namespace:School of Biological Sciences, The University of Hong Kong

text: marine sediment metagenome

text: marine sediment metagenome


text: School of Biological Sciences, The University of Hong Kong

text: public

text: marine sediment metagenome

text: marine sediment metagenome


text: MRC Centre for Regenerative Medicine

text: public

tag: Namespace:MRC Centre for Regenerative Medicine

text: Christian Much

characteristic: collected by

text: house mouse

characteristic: common name

characteristic: dev stage

text: Mus musculus

text: Mus musculus

text: E13.5 WT1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MRC Centre for Regenerative Medicine

text: public

text: Christian Much

text: house mouse

text: Mus musculus

text: Mus musculus

text: E13.5 WT2


characteristic: External Id

text: MRC Centre for Regenerative Medicine

characteristic: INSDC center name

text: public

text: Christian Much

text: house mouse

text: Mus musculus

text: Mus musculus

text: E13.5 DCR1


text: MRC Centre for Regenerative Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Christian Much

text: house mouse

text: Mus musculus

text: Mus musculus

text: E13.5 DCR2


text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: collection date

characteristic: depth

text: savanna

characteristic: environment (biome)

text: savanna

characteristic: environment (feature)

text: savanna soil

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

text: Microbial communities in savanna soils in Kruger National Park, South Africa

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq amplicon sequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Savanna soil samples


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE SAINSBURY LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:THE SAINSBURY LABORATORY

characteristic: Submitter Id

text: bread wheat

characteristic: common name

text: Pieces of asymptomatic wheat leaf blades collected from blast infected fields

characteristic: description

text: Triticum aestivum

characteristic: organism

text: leaf

characteristic: organism part

text: Triticum aestivum

characteristic: title


text: THE SAINSBURY LABORATORY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: bread wheat

text: Pieces of symptomatic wheat leaf blades collected from blast infected fields

text: Triticum aestivum

text: leaf

text: Triticum aestivum


text: ILLUMINA

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: NA12878 mate pair


text: NONE PROVIDED

text: public

tag: Namespace:NONE PROVIDED

text: soil metagenome

text: soil metagenome


K. pneumoniae 10271

text: INSTITUTO NACIONAL DE SALUD

text: public

text: K. pneumoniae 10271

tag: Namespace:INSTITUTO NACIONAL DE SALUD

characteristic: collection date

text: Hypervirulent isolate of Klebsiella pneumoniae associated with abscess hepatic

text: Mexico

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: abscess hepatic

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: K. pneumoniae hypervirulent


name: Bacterial microbiome of boreal podzol at Lamborn_O+N_Tag106

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Uppsala BioCenter

characteristic: INSDC center name

text: public

tag: Namespace:Uppsala BioCenter

text: metagenome

text: metagenome

text: Bacterial communities associated with Pinus sylvestris roots and podzol soil horizons


name: Bacterial microbiome of boreal podzol at Lamborn_E+N_Tag107

text: Uppsala BioCenter

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: metagenome

characteristic: organism

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_B+N_Tag108

text: Uppsala BioCenter

characteristic: INSDC last update

text: public

text: metagenome

text: metagenome

characteristic: title


name: Bacterial microbiome of boreal podzol at Lamborn_O+N_Tag109

text: Uppsala BioCenter

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_E+N_Tag110

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_B+N_Tag111

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_O+N_Tag112

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_E+N_Tag113

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_O-N_Tag114

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_E-N_Tag115

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_B-N_Tag116

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_O-N_Tag117

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_E-N_Tag118

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_B-N_Tag119

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_O-N_Tag120

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_E-N_Tag121

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of boreal podzol at Lamborn_B-N_Tag122

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_O+N_Tag123

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_E+N_Tag124

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_B+N_Tag125

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_O+N_Tag126

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_E+N_Tag127

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_B+N_Tag128

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_O+N_Tag129

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_E+N_Tag130

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_O-N_Tag131

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_E-N_Tag132

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_B-N_Tag133

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_O-N_Tag134

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_E-N_Tag135

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_B-N_Tag136

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_O-N_Tag137

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_E-N_Tag138

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


name: Bacterial microbiome of Pinus sylvestris roots at Lamborn_B-N_Tag139

text: Uppsala BioCenter

text: public

text: metagenome

text: metagenome


text: ANIMAL AND PLANT HEALTH AGENCY

text: public

tag: Namespace:ANIMAL AND PLANT HEALTH AGENCY

text: Escherichia coli

text: Escherichia coli

text: Eurosurveillance mcr-1 isolates


name: Fungal microbiome of boreal podzol at Lamborn_O+N_Tag108

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome

text: Fungal communities associated with Pinus sylvestris roots and podzol soil horizons


name: Fungal microbiome of boreal podzol at Lamborn_E+N_Tag110

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_B+N_Tag111

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_O+N_Tag114

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_E+N_Tag115

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_B+N_Tag120

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_O+N_Tag121

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_E+N_Tag123

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_O-N_Tag127

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_E-N_Tag128

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_B-N_Tag130

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_O-N_Tag132

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_E-N_Tag135

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_B-N_Tag137

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_O-N_Tag138

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_E-N_Tag139

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of boreal podzol at Lamborn_B-N_Tag141

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_O+N_Tag144

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_E+N_Tag145

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_B+N_Tag146

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_O+N_Tag148

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_E+N_Tag152

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_B+N_Tag153

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_O+N_Tag158

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_E+N_Tag159

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_O-N_Tag161

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_E-N_Tag163

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_B-N_Tag165

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_O-N_Tag167

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_E-N_Tag168

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_B-N_Tag171

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_O-N_Tag172

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_E-N_Tag173

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


name: Fungal microbiome of Pinus sylvestris roots at Lamborn_B-N_Tag179

text: Uppsala BioCenter

text: public

text: soil metagenome

text: soil metagenome


text: Genoscope CEA

text: public

tag: Namespace:Genoscope CEA

text: isolated from soil from the Genoscope premises

text: 48.623 N 2.440 E

characteristic: lat lon

text: uncultured delta proteobacterium

text: uncultured delta proteobacterium

text: Procaryotic genome sequencing


text: Genoscope CEA

text: public

text: 48.623 N 2.440 E

text: Uncultured Citrobacter sp.

text: Uncultured Citrobacter sp.

text: Procaryotic genome sequencing


text: Genoscope CEA

text: public

text: 48.623 N 2.440 E

text: Uncultured Clostridiales bacterium

text: Uncultured Clostridiales bacterium

text: Procaryotic genome sequencing


text: Genoscope CEA

text: public

text: 48.623 N 2.440 E

text: Uncultured Dysgonomonas sp.

text: Uncultured Dysgonomonas sp.

text: Procaryotic genome sequencing


text: Genoscope CEA

text: public

text: 48.623 N 2.440 E

text: uncultured alpha proteobacterium

text: uncultured alpha proteobacterium

text: Procaryotic genome sequencing


text: Genoscope CEA

text: public

text: 48.623 N 2.440 E

text: Uncultured Desulfovibrio sp.

text: Uncultured Desulfovibrio sp.

text: Procaryotic genome sequencing


text: SEOUL NATIONAL UNIVERISITY

text: public

tag: Namespace:SEOUL NATIONAL UNIVERISITY

text: human

characteristic: common name

text: Temporal(Anterior temporal) lobe of AD postmortem brain

characteristic: description

text: Homo sapiens

text: Homo sapiens


text: SEOUL NATIONAL UNIVERISITY

text: public

text: human

text: Temporal(Anterior temporal) lobe of Normal postmortem brain

text: Homo sapiens

text: Homo sapiens


text: SEOUL NATIONAL UNIVERISITY

text: public

text: human

text: Temporal(Anterior temporal) lobe of CTE postmortem brain

text: Homo sapiens

text: Homo sapiens


text: SEOUL NATIONAL UNIVERISITY

text: public

text: human

text: Occipital(Posterior visual) lobe of Normal postmortem brain

text: Homo sapiens

text: Homo sapiens


text: SEOUL NATIONAL UNIVERISITY

text: public

text: human

text: Occipital(Posterior visual) lobe of CTE postmortem brain

text: Homo sapiens

text: Homo sapiens


text: SEOUL NATIONAL UNIVERISITY

text: public

text: human

text: Frontal(Superior frontal) lobe of Normal postmortem brain

text: Homo sapiens

text: Homo sapiens


text: SEOUL NATIONAL UNIVERISITY

text: public

text: human

text: Frontal(Superior frontal) lobe of CTE postmortem brain

text: Homo sapiens

text: Homo sapiens


text: SEOUL NATIONAL UNIVERISITY

text: public

text: human

text: Parietal(Superior parietal) lobe of Nomal postmortem brain

text: Homo sapiens

text: Homo sapiens


text: SEOUL NATIONAL UNIVERISITY

text: public

text: human

text: Parietal(Superior parietal) lobe of CTE postmortem brain

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:Ceinge - Biotecnologie Avanzate s.c. a r.l.

text: Nonomuraea sp. ATCC 39727

text: Nonomuraea sp. ATCC 39727

text: Nonomuraea sp. ATCC 39727


text: Hatching:Long-pec - Hatching:Pec-fin - ZFS:0000033 - ZFS:0000034

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: AB

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: mRNA from a pool of 5 zebrafish embryos from the AB_Imperial strain at 54hpf plus ERCC spike mix 2 (Ambion).

characteristic: sample description

text: Danio rerio

text: AB

characteristic: strain


text: Whole embryo

text: Danio rerio

text: AB

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: mRNA from a pool of 5 zebrafish embryos from the AB_Imperial strain mock injected with 1nl of PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 2 (Ambion).

text: Danio rerio

text: AB


text: Whole embryo

text: Danio rerio

text: AB

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: mRNA from a pool of 5 zebrafish embryos from the AB_Imperial strain injected with 1nl of wild type Shigella 90T, pathogen load of 1000/embryo in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 2 (Ambion).

text: Danio rerio

text: AB

characteristic: title


text: Whole embryo

text: Danio rerio

text: AB

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

characteristic: common name

text: Danio rerio

text: mRNA from a pool of 5 zebrafish embryos from the AB_Imperial strain injected with 1nl of mutant Shigella T3SS, pathogen load of 1000/embryo in PBS at 48hpf and collected 6 hours post infection. The RNA also contains ERCC spike mix 2 (Ambion).

text: Danio rerio

text: AB


Pool 1 fw

text: public

text: Pool 1 fw

tag: Namespace:Senckenberg Biodiversity and Climate Research Centre

characteristic: collection date

characteristic: depth

text: grassland

characteristic: environment (biome)

text: meadow

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: N50° 0' 26.482''

characteristic: geographic location (latitude)

text: E8° 23' 58.502''

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: TME experiment 1

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Pool 1 forward reads


Pool 2 fw

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Senckenberg Biodiversity and Climate Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Pool 2 fw

characteristic: Submitter Id

text: grassland

text: meadow

text: soil

text: Germany

text: N50° 0' 26.482''

text: E8° 23' 58.502''

text: metagenome

text: metagenome

characteristic: organism

text: TME experiment 1

text: metagenome

text: Illumina MiSeq

text: soil

text: Pool 2 forward reads

characteristic: title