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text: Oryza sativa Japonica Group

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characteristic: ENA-CHECKLIST

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text: time

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text: organism part

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characteristic: ENA-CHECKLIST

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text: time

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characteristic: ENA-CHECKLIST

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text: 10 day

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text: Triticum aestivum


text: ENA

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characteristic: ENA-FIRST-PUBLIC

text: ENA

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characteristic: INSDC status

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: pool

text: organism part

text: Triticum aestivum

text: root (EFO_0000989)

text: Triticum aestivum


characteristic: External Id

text: ENA

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: whole plant fruit formation stage 30 to 50%

text: organism part

text: Triticum aestivum

text: fruit (EFO_0001028)

text: Triticum aestivum


text: ENA

text: public

text: bread wheat

characteristic: common name

text: Chinese Spring (EFO_0007588)

text: pool

text: organism part

text: Triticum aestivum

text: fruit (EFO_0001028)

characteristic: recurated from

text: Triticum aestivum

characteristic: title


text: ENA

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: SE.02 two nodes or internodes visible stage

characteristic: experimental factor 1

text: organism part

text: Triticum aestivum

text: stem (EFO_0001040)

text: Triticum aestivum


characteristic: ENA-CHECKLIST

text: ENA

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

characteristic: cultivar

text: whole plant fruit formation stage 70% to final size

text: organism part

characteristic: experimental factor 2

text: Triticum aestivum

text: fruit (EFO_0001028)

text: Triticum aestivum


characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: SE.99 maximum stem length reached stage

characteristic: dev stage

text: organism part

text: Triticum aestivum

characteristic: organism

text: inflorescence (EFO_0001029)

text: Triticum aestivum


characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC center name

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: cotyledon emergence stage

text: organism part

text: Triticum aestivum

text: root (EFO_0000989)

characteristic: organism part

text: Triticum aestivum


characteristic: External Id

text: ENA

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: FL.02 1/2 of flowers open stage

text: organism part

text: Triticum aestivum

text: stem (EFO_0001040)

text: Triticum aestivum


text: ENA

text: public

characteristic: SRA accession

text: bread wheat

characteristic: common name

text: Chinese Spring (EFO_0007588)

text: pool

text: organism part

text: Triticum aestivum

text: inflorescence (EFO_0001029)

characteristic: recurated from

text: Triticum aestivum


text: ENA

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: LP.03 three leaves visible stage

text: organism part

text: Triticum aestivum

text: root (EFO_0000989)

text: Triticum aestivum

characteristic: title


characteristic: ENA-CHECKLIST

text: ENA

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

characteristic: cultivar

text: pool

characteristic: experimental factor 1

text: organism part

text: Triticum aestivum

text: leaf (EFO_0000993)

text: Triticum aestivum


characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

characteristic: dev stage

text: organism part

characteristic: experimental factor 2

text: Triticum aestivum

text: leaf (EFO_0000993)

text: Triticum aestivum


characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC center name

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: whole plant fruit ripening stage

text: organism part

text: Triticum aestivum

characteristic: organism

text: fruit (EFO_0001028)

text: Triticum aestivum


characteristic: External Id

text: ENA

characteristic: INSDC first public

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: organism part

text: Triticum aestivum

text: inflorescence (EFO_0001029)

characteristic: organism part

text: Triticum aestivum


text: ENA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: bread wheat

characteristic: common name

text: Chinese Spring (EFO_0007588)

text: FL.02 1/2 of flowers open stage

text: organism part

text: Triticum aestivum

text: inflorescence (EFO_0001029)

text: Triticum aestivum


text: ENA

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: pool

text: organism part

text: Triticum aestivum

text: stem (EFO_0001040)

characteristic: recurated from

text: Triticum aestivum


characteristic: ENA-CHECKLIST

text: ENA

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

characteristic: cultivar

text: cotyledon emergence stage

text: organism part

text: Triticum aestivum

text: leaf (EFO_0000993)

text: Triticum aestivum

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: pool

characteristic: dev stage

characteristic: experimental factor 1

text: organism part

text: Triticum aestivum

text: root (EFO_0000989)

text: Triticum aestivum


characteristic: ENA-LAST-UPDATE

text: ENA

characteristic: INSDC center name

text: public

text: bread wheat

text: Chinese Spring (EFO_0007588)

text: 2.03 main shoot and axillary shoots visible at three nodes stage

text: organism part

characteristic: experimental factor 2

text: Triticum aestivum

text: leaf (EFO_0000993)

text: Triticum aestivum


characteristic: External Id

text: ENA

characteristic: INSDC first public

text: public

text: 14 day

characteristic: age

text: Japanese rice

text: Nipponbare (EFO_0007587)

text: seedling

text: salt treatment

characteristic: environmental stress

text: environmental stress

text: protocol

text: Oryza sativa Japonica Group

characteristic: organism

text: whole organism (EFO_0002906)

text: RNA-seq of coding RNA (EFO_0003738)

characteristic: protocol

text: Oryza sativa Japonica Group


text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 14 day

text: Japanese rice

characteristic: common name

text: Nipponbare (EFO_0007587)

text: seedling

text: cold temperature regimen

text: environmental stress

text: protocol

text: Oryza sativa Japonica Group

text: whole organism (EFO_0002906)

characteristic: organism part

text: RNA-seq of coding RNA (EFO_0003738)

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ENA

text: public

text: 14 day

text: Japanese rice

text: Nipponbare (EFO_0007587)

characteristic: cultivar

text: seedling

characteristic: dev stage

text: none (EFO_0001461)

text: environmental stress

text: protocol

text: Oryza sativa Japonica Group

text: whole organism (EFO_0002906)

text: RNA-seq of coding RNA (EFO_0003738)

characteristic: recurated from

text: Oryza sativa Japonica Group

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 14 day

text: Japanese rice

text: Nipponbare (EFO_0007587)

text: seedling

text: drought environment

text: environmental stress

characteristic: experimental factor 1

text: protocol

characteristic: experimental factor 2

text: Oryza sativa Japonica Group

text: whole organism (EFO_0002906)

text: RNA-seq of coding RNA (EFO_0003738)

text: Oryza sativa Japonica Group


text: ENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 14 day

characteristic: age

text: Japanese rice

text: Nipponbare (EFO_0007587)

text: seedling

text: cold temperature regimen

characteristic: environmental stress

text: environmental stress

text: protocol

text: Oryza sativa Japonica Group

characteristic: organism

text: whole organism (EFO_0002906)

text: RNA-seq of non coding RNA (EFO_0003737)

characteristic: protocol

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

tag: Namespace:State Key Laboratory of Lake Science and Environment

characteristic: Submitter Id

characteristic: collection date

unit: m

characteristic: depth

text: lake sediment

characteristic: environment (biome)

text: anaerobic

characteristic: environment (feature)

text: sediment slurry

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Brevundimonas vesicularis

text: Genome sequencing of Brevundimonas vesicularis Strain R18-2-22

characteristic: project name

text: Brevundimonas vesicularis

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: State Key Laboratory of Lake Science and Environment

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: lake sediment

text: anaerobic

text: sediment slurry

text: China

text: metagenome

text: Micrococcus luteus

characteristic: organism

text: Genome sequencing of Micrococcus luteus strain R3-15-1

text: Micrococcus luteus

text: sediment

text: Illumina Miseq

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: lake sediment

characteristic: environment (biome)

text: anaerobic

characteristic: environment (feature)

text: sediment slurry

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: metagenome

text: Arsenicicoccus bolidensis

text: Genome sequencing of Arsenicicoccus bolidensis strain R3-19-5

text: Arsenicicoccus bolidensis

text: sediment

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: lake sediment

text: anaerobic

text: sediment slurry

text: China

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Acinetobacter johnsonii

text: Genome sequencing of Acinetobacter johnsonii stain CRT-13

characteristic: project name

text: Acinetobacter johnsonii

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: lake sediment

text: anaerobic

text: sediment slurry

text: China

text: metagenome

text: Methylobacterium populi

characteristic: organism

text: Genome sequencing of Methylobacterium populi stain M2

text: Methylobacterium populi

text: sediment

text: Illumina Miseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: lake sediment

characteristic: environment (biome)

text: anaerobic

characteristic: environment (feature)

text: sediment slurry

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: metagenome

text: Paenibacillus ehimensis

text: Genome sequencing of Paenibacillus ehimensis stain R4-15-5

text: Paenibacillus ehimensis

text: sediment

text: Illumina Miseq


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: NC State University

text: public

text: E-MTAB-4724:Sample1_shoot_1_day_after_infection

tag: Namespace:NC State University

text: ArrayExpress

characteristic: broker name

text: Protocols: The experiments were conducted in greenhouse conditions. Meloidogyne hapla in all experiments were maintained on the root system of Tomato (cv. Rutgers). An egg mass of M. hapla isolated by the standard bleach procedure was purified on a 40% sucrose density gradient as previously described (Byrd et al. 1996). For sterile M. hapla egg hatches, hatcheries were prepared with mesh-based sieves in a shallow bowl. The collection of viable infective J2 was obtained after three days of hatching. Host plant, Medicago truncatula, was synchronously inoculated with M. hapla J2. The acquisition of homogenous mixture J2 was supported by collecting over three days after egg isolation and hatching, which diluted the potential effects of post-hatch age of J2 on larval penetration variance. RKN and host plant materials were harvested at indicated time points and immediately frozen in liquid nitrogen. RNA isolation procedure was followed by the Dynabeads® RNA DirectTM Purifciation Kit protocol. The RNA quality and concentration were checked on Bioanalyzer 2100 (Agilent, Santa Clara, CA, USA) and RNA Pico Chip respectively. Libraries were prepared using a TruSeq RNA library prep kit v1 (Illumina, San Diego, CA, USA).

characteristic: description

text: Meloidogyne hapla infected

characteristic: infect

text: root metagenome

text: root metagenome

text: shoot

characteristic: organism part

text: root metagenome

text: 1 day

characteristic: time

type: has member


text: NC State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4724:Sample10_root_7_day_after_infection

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

characteristic: organism

text: root metagenome

text: root

text: root metagenome

text: 7 day

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: NC State University

text: public

text: E-MTAB-4724:Sample12_shoot_2_day_noinfection

characteristic: Submitter Id

text: ArrayExpress

text: barrel medic

characteristic: common name

text: Medicago truncatula

text: Medicago truncatula

text: shoot

text: Medicago truncatula

text: 2 day


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: NC State University

text: public

text: E-MTAB-4724:Sample13_shoot_4_day_noinfection

text: ArrayExpress

text: barrel medic

text: Medicago truncatula

text: Medicago truncatula

text: shoot

text: Medicago truncatula

text: 4 day


text: NC State University

text: public

text: E-MTAB-4724:Sample14_shoot_5_day_noinfection

text: ArrayExpress

characteristic: broker name

text: barrel medic

characteristic: description

text: Medicago truncatula

text: Medicago truncatula

text: shoot

text: Medicago truncatula

text: 5 day


text: NC State University

text: public

text: E-MTAB-4724:Sample15_shoot_7_day_noinfection

text: ArrayExpress

text: barrel medic

text: Medicago truncatula

text: Medicago truncatula

text: shoot

characteristic: organism part

text: Medicago truncatula

text: 7 day


text: NC State University

text: public

text: E-MTAB-4724:Sample16_root_1_day_noinfection

text: ArrayExpress

text: barrel medic

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula

text: 1 day

characteristic: time


text: NC State University

characteristic: INSDC center name

text: public

text: E-MTAB-4724:Sample17_root_2_day_noinfection

text: ArrayExpress

text: barrel medic

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula

text: 2 day


text: NC State University

characteristic: INSDC first public

text: public

text: E-MTAB-4724:Sample18_root_4_day_noinfection

text: ArrayExpress

text: barrel medic

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula

text: 4 day


text: NC State University

characteristic: INSDC last update

text: public

text: E-MTAB-4724:Sample19_root_5_day_noinfection

text: ArrayExpress

text: barrel medic

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula

text: 5 day


text: NC State University

text: public

characteristic: INSDC status

text: E-MTAB-4724:Sample20_root_7_day_noinfection

text: ArrayExpress

text: barrel medic

text: Medicago truncatula

text: Medicago truncatula

text: root

text: Medicago truncatula

text: 7 day


E-MTAB-4724:Sample 21_egg

text: NC State University

text: public

characteristic: SRA accession

text: E-MTAB-4724:Sample 21_egg

text: ArrayExpress

text: fertilized egg stage

characteristic: developmental stage

text: Meloidogyne hapla

text: Meloidogyne hapla

text: Meloidogyne hapla

text: Sample 21_egg


text: NC State University

text: public

text: E-MTAB-4724:Sample11_shoot_1_day_noinfection

text: ArrayExpress

text: barrel medic

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: shoot

text: Medicago truncatula

text: 1 day

characteristic: title


E-MTAB-4724:Sample 22_juvenile

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: NC State University

text: public

text: E-MTAB-4724:Sample 22_juvenile

text: ArrayExpress

text: juvenile stage

text: Meloidogyne hapla

text: Meloidogyne hapla

text: Meloidogyne hapla

text: Sample 22_juvenile


E-MTAB-4724:Sample 23

text: NC State University

text: public

text: E-MTAB-4724:Sample 23

characteristic: Submitter Id

text: ArrayExpress

text: Meloidogyne hapla infected

characteristic: infect

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 23


E-MTAB-4724:Sample 24

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: NC State University

text: public

text: E-MTAB-4724:Sample 24

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 24


E-MTAB-4724:Sample 25

text: NC State University

text: public

text: E-MTAB-4724:Sample 25

text: ArrayExpress

characteristic: broker name

characteristic: description

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 25


E-MTAB-4724:Sample 26

text: NC State University

text: public

text: E-MTAB-4724:Sample 26

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

characteristic: organism part

text: root metagenome

characteristic: time

text: Sample 26


E-MTAB-4724:Sample 27

text: NC State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4724:Sample 27

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 27


E-MTAB-4724:Sample 28

text: NC State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4724:Sample 28

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 28


E-MTAB-4724:Sample 29

text: NC State University

text: public

characteristic: SRA accession

text: E-MTAB-4724:Sample 29

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 29


E-MTAB-4724:Sample 30

text: NC State University

text: public

text: E-MTAB-4724:Sample 30

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

characteristic: organism

text: root metagenome

text: root

text: root metagenome

text: Sample 30


E-MTAB-4724:Sample 31

text: NC State University

text: public

text: E-MTAB-4724:Sample 31

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 31

characteristic: title


E-MTAB-4724:Sample 32

characteristic: ENA-CHECKLIST

text: NC State University

text: public

text: E-MTAB-4724:Sample 32

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 32


E-MTAB-4724:Sample 33

characteristic: ENA-LAST-UPDATE

text: NC State University

text: public

text: E-MTAB-4724:Sample 33

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 33


E-MTAB-4724:Sample 34

text: NC State University

text: public

text: E-MTAB-4724:Sample 34

characteristic: Submitter Id

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 34


E-MTAB-4724:Sample 35

text: NC State University

text: public

text: E-MTAB-4724:Sample 35

text: ArrayExpress

text: Meloidogyne hapla infected

characteristic: infect

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 35


E-MTAB-4724:Sample 36

characteristic: ENA-FIRST-PUBLIC

text: NC State University

text: public

text: E-MTAB-4724:Sample 36

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 36


E-MTAB-4724:Sample 37

characteristic: External Id

text: NC State University

text: public

text: E-MTAB-4724:Sample 37

text: ArrayExpress

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 37


E-MTAB-4724:Sample 38

text: NC State University

text: public

text: E-MTAB-4724:Sample 38

text: ArrayExpress

characteristic: broker name

text: Meloidogyne hapla infected

text: root metagenome

text: root metagenome

text: root

text: root metagenome

text: Sample 38