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text: Human stool sample from host FR-558

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: EMBL - Germany

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text: human

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text: France

text: human-gut

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text: Homo sapiens

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text: Human stool sample from host FR-568


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text: human

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text: Small adenoma

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text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-596


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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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text: human

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text: human-gut

characteristic: human gut environmental package

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text: Human stool sample from host FR-606

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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: body mass index

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text: human

characteristic: common name

text: Cancer

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characteristic: environment (biome)

text: France

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

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text: female

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text: Human stool sample from host FR-617


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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

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characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Homo sapiens

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text: Human stool sample from host FR-626


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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: body mass index

characteristic: collection date

text: human

characteristic: common name

text: Cancer

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text: France

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

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text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-628

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

text: Small adenoma

text: France

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

text: Illumina

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text: male

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text: Human stool sample from host FR-643


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characteristic: SRA accession

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characteristic: body mass index

characteristic: collection date

text: human

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text: Cancer

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characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-654


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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

text: Small adenoma

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characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

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text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-664

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

characteristic: collection date

text: human

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text: Small adenoma

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characteristic: environment (biome)

text: France

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

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text: male

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text: Human stool sample from host FR-666


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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

text: Cancer

characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-667


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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: body mass index

characteristic: collection date

text: human

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text: Small adenoma

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text: France

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

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text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-672

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Normal

text: France

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

text: Illumina

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text: male

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text: Human stool sample from host FR-682


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characteristic: Submitter Id

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characteristic: body mass index

characteristic: collection date

text: human

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text: Normal

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characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-684


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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

text: Normal

text: France

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

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text: Human stool sample from host FR-696

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characteristic: Submitter Id

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characteristic: body mass index

characteristic: collection date

text: human

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text: Normal

characteristic: diagnosis

characteristic: environment (biome)

text: France

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

text: Illumina

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text: female

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text: Human stool sample from host FR-716


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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

text: Normal

characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-719


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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: body mass index

characteristic: collection date

text: human

characteristic: common name

text: Normal

characteristic: diagnosis

characteristic: environment (biome)

text: France

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

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text: Homo sapiens

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text: Illumina

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text: Human stool sample from host FR-721

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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Cancer

text: France

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

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text: female

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text: Human stool sample from host FR-722


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characteristic: Submitter Id

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characteristic: body mass index

characteristic: collection date

text: human

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text: Cancer

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characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-723


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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

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text: France

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text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

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text: Human stool sample from host FR-726

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characteristic: Submitter Id

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characteristic: body mass index

characteristic: collection date

text: human

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text: Normal

characteristic: diagnosis

characteristic: environment (biome)

text: France

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

text: Illumina

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text: female

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text: Human stool sample from host FR-728


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characteristic: External Id

text: EMBL - Germany

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characteristic: INSDC last update

text: public

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text: human

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characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-730


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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: body mass index

characteristic: collection date

text: human

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text: Cancer

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text: France

characteristic: host subject id

text: human-gut

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text: Homo sapiens

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text: Human stool sample from host FR-734

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characteristic: External Id

text: EMBL - Germany

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text: public

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text: human

text: Normal

text: France

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text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

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text: Human stool sample from host FR-751


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characteristic: body mass index

characteristic: collection date

text: human

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text: Normal

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characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-759


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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

text: Cancer

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text: human-gut

characteristic: human gut environmental package

text: metagenome

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text: Homo sapiens

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text: Human stool sample from host FR-767

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characteristic: Submitter Id

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characteristic: body mass index

characteristic: collection date

text: human

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text: Cancer

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text: France

text: human-gut

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text: Homo sapiens

characteristic: organism

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text: Human stool sample from host FR-768


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characteristic: External Id

text: EMBL - Germany

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text: public

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text: human

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characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Homo sapiens

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text: Human stool sample from host FR-770


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characteristic: Submitter Id

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characteristic: collection date

text: human

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text: Cancer

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text: France

characteristic: host subject id

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text: Homo sapiens

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text: Human stool sample from host FR-772

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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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text: public

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text: human

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characteristic: organism

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text: Human stool sample from host FR-780


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characteristic: collection date

text: human

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text: Cancer

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characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-783


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characteristic: External Id

text: EMBL - Germany

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text: public

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text: human

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characteristic: human gut environmental package

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text: Human stool sample from host FR-788

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characteristic: body mass index

characteristic: collection date

text: human

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text: Small adenoma

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text: France

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text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

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text: female

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text: Human stool sample from host FR-790


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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

text: Small adenoma

characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

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text: Human stool sample from host FR-792


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characteristic: Submitter Id

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characteristic: collection date

text: human

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text: Cancer

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text: France

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

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text: Homo sapiens

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text: Illumina

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text: Human stool sample from host FR-812

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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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text: public

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text: human

text: Cancer

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text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

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text: female

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text: Human stool sample from host FR-817


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characteristic: body mass index

characteristic: collection date

text: human

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characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-820


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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

text: Cancer

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characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

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text: Homo sapiens

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text: Human stool sample from host FR-824

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characteristic: body mass index

characteristic: collection date

text: human

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text: Cancer

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characteristic: environment (biome)

text: France

text: human-gut

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text: Homo sapiens

characteristic: organism

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text: Homo sapiens

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text: Human stool sample from host FR-825


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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: human

text: Small adenoma

characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Homo sapiens

text: Illumina

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text: Human stool sample from host FR-826


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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collection date

text: human

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text: Cancer

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text: France

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characteristic: human gut environmental package

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text: Human stool sample from host FR-827

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characteristic: External Id

text: EMBL - Germany

characteristic: INSDC center name

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text: public

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text: human

text: Cancer

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characteristic: organism

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text: Human stool sample from host FR-828


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characteristic: SRA accession

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characteristic: body mass index

characteristic: collection date

text: human

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text: Small adenoma

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characteristic: environment (feature)

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: Illumina

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text: Human stool sample from host FR-829


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characteristic: External Id

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text: Wetland soil

text: Soil

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: pyrosequencing

text: soil

text: Mofette soil

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text: public

characteristic: INSDC status

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text: 0-10 cm mofette soil 13CO2 SIP incubation; bacterial 16S rRNA pyrosequencing of light SIP fraction from 13C labelling treatment

text: Soil

characteristic: environment (biome)

text: Wetland soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: soil metagenome

text: pyrosequencing

text: soil

text: Mofette soil


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characteristic: INSDC last update

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text: 0-10 cm mofette soil 13CO2 SIP incubation; bacterial 16S rRNA pyrosequencing of heavy SIP fraction from unlabeled treatment

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: pyrosequencing

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text: soil

characteristic: soil environmental package

text: Mofette soil


characteristic: ENA-FIRST-PUBLIC

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characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: collection date

text: 0-10 cm mofette soil 13CO2 SIP incubation; bacterial 16S rRNA pyrosequencing of medium SIP fraction from unlabeled treatment

characteristic: description

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: pyrosequencing

text: soil

text: Mofette soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: INSTITUTE OF ECOLOGY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: depth

text: 0-10 cm mofette soil 13CO2 SIP incubation; bacterial 16S rRNA pyrosequencing of light SIP fraction from unlabeled treatment

text: Soil

characteristic: environment (biome)

text: Wetland soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: soil metagenome

text: pyrosequencing

text: soil

text: Mofette soil


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INSTITUTE OF ECOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 0-10 cm mofette soil; archaeal 16S rRNA pyrosequencing of cDNA

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: Czech Republic

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

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text: Mofette soil


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text: 10-25 cm mofette soil; archaeal 16S rRNA pyrosequencing of cDNA

characteristic: description

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: pyrosequencing

text: soil

text: Mofette soil

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INSTITUTE OF ECOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: depth

text: 25-40 cm mofette soil; archaeal 16S rRNA pyrosequencing of cDNA

text: Soil

characteristic: environment (biome)

text: Wetland soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Czech Republic

text: Czech Republic

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: soil metagenome

text: pyrosequencing

text: soil

text: Mofette soil


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: INSTITUTE OF ECOLOGY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: 0-10 cm reference wetland soil; archaeal 16S rRNA pyrosequencing of cDNA

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: Czech Republic

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Reference Soil


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INSTITUTE OF ECOLOGY

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characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: 10-25 cm wetland reference soil; archaeal 16S rRNA pyrosequencing of cDNA

characteristic: description

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: pyrosequencing

text: soil

text: Reference soil

characteristic: title


characteristic: ENA-CHECKLIST

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text: INSTITUTE OF ECOLOGY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: depth

text: 10-45 cm wetland reference soil; archaeal 16S rRNA pyrosequencing of cDNA

text: Soil

characteristic: environment (biome)

text: Wetland soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Czech Republic

text: Czech Republic

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: Carbon flow from volcanic CO2 into soil microbial communities of a wetland mofette

text: soil metagenome

text: pyrosequencing

text: soil

text: Reference soil


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INSTITUTE OF ECOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 0-10 cm mofette soil; bacterial 16S rRNA pyrosequencing of cDNA

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: Czech Republic

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Mofette soil


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: INSTITUTE OF ECOLOGY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: 10-25 cm mofette soil; bacterial 16S rRNA pyrosequencing of cDNA

characteristic: description

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: pyrosequencing

text: soil

text: Mofette soil

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INSTITUTE OF ECOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: depth

text: 25-40 cm mofette soil; bacterial 16S rRNA pyrosequencing of cDNA

text: Soil

characteristic: environment (biome)

text: Wetland soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Czech Republic

text: Czech Republic

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: soil metagenome

text: pyrosequencing

text: soil

text: Mofette soil


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: INSTITUTE OF ECOLOGY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: 0-10 cm reference wetland soil; bacterial 16S rRNA pyrosequencing of cDNA

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: Czech Republic

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Reference Soil


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INSTITUTE OF ECOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: 10-25 cm wetland reference soil; bacterial 16S rRNA pyrosequencing of cDNA

characteristic: description

text: Soil

text: Wetland soil

text: Soil

text: Czech Republic

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: pyrosequencing

text: soil

text: Reference soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: INSTITUTE OF ECOLOGY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: depth

text: 10-45 cm wetland reference soil; bacterial 16S rRNA pyrosequencing of cDNA

text: Soil

characteristic: environment (biome)

text: Wetland soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Czech Republic

text: Czech Republic

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: soil metagenome

text: pyrosequencing

text: soil

text: Reference soil


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: MPIEVB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: age

characteristic: anonymized name

characteristic: body mass index

text: mucosa

characteristic: body product

text: Sigmoid colon

characteristic: body site

text: ChimeraSlayer; Usearch 4.1 database

characteristic: chimera check

text: human

characteristic: common name

text: The knowledge of species composition and functional aspects of the human microbiome is steadily increasing; but still limited information regarding its variation on a global scale is available. Due to the microbial involvement in inflammatory bowel diseases and their increase in global frequency; shared patterns across populations may hold important clinical relevance. In this study; we analyze a set of 89 mucosal biopsies sampled from individuals of German; Lithuanian and Indian origins; using bacterial community profiling of a roughly equal number of healthy controls; Crohn Disease and Ulcerative Colitis patients from each location. From each individual sample 16S rDNA and rRNA are analyzed as proxies for standing and active microbial community structure; respectively. We find pronounced regional as well as global disease patterns in the major phyla and patterns of diversity; which differ when investigated in the standing or active community. Geography appears to dominate patterns of beta diversity; with European samples being more similar to each other; which is more pronounced in the active microbial community. However; when geographic influence is accounted for; some universal patterns of disease become apparent. In particular; two genera belonging to the Clostridium leptum subgroup; Faecalibacteria and Papillibacter; display consistent patterns with respect to disease status and may thus serve as reliable �microbiomarkers�. These analyses reveal the importance of the interaction of geography and disease in the interpretation of disease-associated changes in microbial communities and highlight the added value of analyzing communities on both the rDNA and rRNA level.

text: remission

characteristic: disease status

text: organism-associated habitat

text: organism-associated habitat

text: mucus

text: microbiome

characteristic: experimental factor

text: Ulcerative Colitis

characteristic: gastrointestinal tract disorder

text: India

characteristic: geographic location (latitude)

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: ASA;Steroids;Probiotics;Antibiotics

characteristic: medication

text: TGATACGTCT

characteristic: multiplex identifiers

text: Homo sapiens

characteristic: pcr primers

text: pathological

characteristic: phenotype

text: BMRP

characteristic: project name

text: biopsy

characteristic: sample collection device or method

text: Homo sapiens

text: software

characteristic: sequence quality check

text: pyrosequencing

characteristic: sequencing method

text: DNA

characteristic: sequencing template

text: male

characteristic: sex

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Regional patterns of the standing and active human gut microbiome in health and inflammatory bowel diseases


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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: anonymized name

characteristic: body mass index

text: mucosa

characteristic: body product

text: Sigmoid colon

characteristic: body site

text: ChimeraSlayer; Usearch 4.1 database

characteristic: chimera check

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: remission

characteristic: disease status

text: organism-associated habitat

characteristic: environment (biome)

text: organism-associated habitat

characteristic: environment (feature)

text: mucus

characteristic: environment (material)

text: microbiome

characteristic: experimental factor

text: Crohn Disease

characteristic: gastrointestinal tract disorder

text: India

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

text: ASA

text: ACGCTCGACA

text: Homo sapiens

characteristic: organism

text: pathological

text: BMRP

text: biopsy

text: Homo sapiens

text: software

text: pyrosequencing

text: DNA

text: male

text: 16S rRNA

characteristic: title