characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SDSU

characteristic: INSDC first public

text: public

characteristic: collection date

text: Safety of oral iron administration in African children has been questioned as it is associated with an increased burden of infectious disease. However, it remains unclear to which extent oral iron administration affects the intestinal microbiome. Therefore, we here investigated the impact of multiple iron preparations and doses on the growth and metabolism of a human gut microbiota in a well-controlled in vitro model of the large intestine. Microbiome analysis showed clear iron-induced changes and prominent shifts included a decrease of Bifidobacteriaceae and Lactobacillaceae under iron-rich conditions, paralleled by an increase of Roseburia and Prevotella. Metagenomic analyses showed a general enrichment of bacterial motility-chemotaxis systems under iron-rich conditions. Metabolome profiling showed that gut microbial activity markedly shifted from a saccharolytic to a proteolytic profile in response to iron. Levels of branched chain fatty acids and ammonia increased significantly, in particular under ferrous sulfate-rich conditions. Importantly, cell viability tests showed increased cytotoxicity of metabolite-containing effluent from iron-rich conditions. We also identified microbial metabolites with siderophoric activity that were specifically produced under low-iron conditions. Our data indicate that in the absence of host influences, iron induces a more hostile intestinal environment characterized by i) reduction of beneficial microbes and increase of certain bacterial species with pathogenic potential, ii) increased levels of bacterial metabolites that can impair the barrier function of the gut wall, and iii) increase of virulence-associated pathways of enteric pathogens. It can be envisaged that these in vitro phenomena also contribute to an increased risk for enteric infections in vivo.

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anaerobic bioreactor

characteristic: environment (feature)

text: feces

text: Netherlands

text: mimarks-culture

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: metagenome

characteristic: organism

text: metagenome

text: 454 flx

text: Gut microbial metabolism shifts towards a more toxic profile with supplementary iron in a kinetic model of the human large intestine


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Haifa University, Leon H. Charney School of Marine Sciences - Israel

characteristic: Submitter Id

text: G2 stations across the eddy

text: Water

text: Photic zone

text: Seawater sample

characteristic: environment (material)

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina HiSeq2500

characteristic: sequencing method

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Haifa University, Leon H. Charney School of Marine Sciences - Israel

characteristic: INSDC first public

text: public

characteristic: collection date

text: G3 station across the eddy

characteristic: description

text: Water

characteristic: environment (biome)

text: Photic zone

characteristic: environment (feature)

text: Seawater sample

text: Mediterranean Sea

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina HiSeq2500

text: water


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: G4 station across the eddy

text: Water

text: Photic zone

text: Seawater

characteristic: environment (material)

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: metagenome

text: metagenome

text: Illumina HiSeq2500

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: G5 station across the eddy

text: Water

text: Photic zone

text: Seawater sample

text: Mediterranean Sea

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina HiSeq2500

characteristic: sequencing method

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: G6 station across the eddy

characteristic: description

text: Water

characteristic: environment (biome)

text: Photic zone

characteristic: environment (feature)

text: Seawater sample

text: Mediterranean Sea

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina HiSeq2500

text: water


Infection 0

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WAGENINGEN UR

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Infection 0

tag: Namespace:WAGENINGEN UR

characteristic: Submitter Id

text: biological replicate 1

text: Germany

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: free-living

characteristic: host scientific name

text: ATCC #35733

characteristic: isolation source

text: Mycobacterium bovis BCG str. ATCC 35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: SSI 1331

characteristic: serovar

text: Mycobacterium bovis BCG SSI 1331

characteristic: strain

text: M. bovis BCG infecting THP-1 cells


Infection 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Infection 1

characteristic: collection date

text: Biological replicate 2

text: Germany

text: healthy

text: free living

text: ATCC #35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: SSI 1331

text: Mycobacterium bovis BCG SSI 1331

text: M. bovis BCG infecting THP-1 cells

characteristic: title


Infection 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WAGENINGEN UR

text: public

text: Infection 2

text: Biological replicate 3

characteristic: description

text: Germany

text: healthy

text: free-living

text: ATCC #35733

text: Mycobacterium bovis BCG str. ATCC 35733

characteristic: organism

text: Mycobacterium bovis BCG str. ATCC 35733

text: SSI 1331

text: Mycobacterium bovis BCG SSI 1331

text: M. bovis BCG infecting THP-1 cells


Enriched infection 1

text: WAGENINGEN UR

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Enriched infection 1

characteristic: Submitter Id

text: biological replicate 1

text: Germany

text: healthy

text: free-living

text: ATCC #35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: SSI 1331

text: Mycobacterium bovis BCG SSI 1331

text: M. bovis BCG infecting THP-1 cells, enriched for M. bovis BCG


Enriched infection 2

text: WAGENINGEN UR

text: public

text: Enriched infection 2

text: biological replicate 2

text: Germany

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: free-living

characteristic: host scientific name

text: ATCC #35733

characteristic: isolation source

text: Mycobacterium bovis BCG str. ATCC 35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: SSI 1331

text: Mycobacterium bovis BCG SSI 1331


Spike-in

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UR

text: public

text: Spike-in

text: Germany

text: healthy

text: free-living

text: ATCC #35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: SSI 1331

characteristic: serovar

text: Mycobacterium bovis BCG SSI 1331

characteristic: strain

text: Spike-in of M. bovis BCG and THP-1 cells


Exponentially growing BCG

text: WAGENINGEN UR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Exponentially growing BCG

characteristic: collection date

text: Germany

text: healthy

text: free-living

text: ATCC #35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: Mycobacterium bovis BCG str. ATCC 35733

text: SSI 1331

text: Mycobacterium bovis BCG SSI 1331

text: M. bovis BCG grown on Middlebrook medium

characteristic: title


THP-1 cells

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WAGENINGEN UR

text: public

text: THP-1 cells

text: human

characteristic: common name

text: Germany

text: healthy

text: free-living

text: ATCC #TIB-202

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: THP-1 cells maintainted in RPMI medium 1640


text: CEBITEC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: depth

text: Genome sequencing

characteristic: description

text: woodland

characteristic: environment (biome)

text: land

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: [Clostridium] cellulosi

text: Biogas

characteristic: project name

text: [Clostridium] cellulosi

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Complete genome sequence of Clostridium cellulosi DG5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CTBE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: UNIANDES

characteristic: broker name

characteristic: collection date

text: hydrogen production

text: Bioreactor

text: Biofilm

text: water

text: Brazil

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

characteristic: organism

characteristic: ph

text: BioHydrogen

text: metagenome

text: Pyrosequencing

unit: ºC

characteristic: temperature

text: thermophilic hydrogen production - day 30

characteristic: title

text: sugarcane vinasse

characteristic: wastewater type

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: CTBE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: UNIANDES

text: No hydrogen production

characteristic: description

text: Bioreactor

characteristic: environment (biome)

text: Biofilm

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: BioHydrogen

characteristic: project name

text: metagenome

text: Pyrosequencing

characteristic: sequencing method

text: thermophilic hydrogen production - day 600

text: sugarcane vinasse

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Swiss Federal Research Institute WSL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Swiss Federal Research Institute WSL

characteristic: collection date

characteristic: depth

text: soil

text: soil

text: soil

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: pyrosequencing

text: soil

characteristic: soil environmental package

type: has member


text: JIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Grass

characteristic: current vegetation

text: Analysis of microbial community function in the rhizosphere of crop plants grown for 4 weeks

characteristic: description

text: Terrestrial biome

characteristic: environment (biome)

text: Rhizosphere

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

text: 28.69 mg/kg nitrate (NO3-) 136.8 mg/kg phosphate (PO43-) 167.4mg/kg potassium (K+) 63.55 mg/kg magnesium (Mg2+)

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

unit: g

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2373 (pea)

characteristic: title

unit: g/kg

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Grass

characteristic: depth

text: Terrestrial biome

text: Rhizosphere

text: Soil

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: Norfolk, Bawburgh Farm

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: Rhizosphere metatranscriptomics

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2374 (pea)


characteristic: ENA-CHECKLIST

text: JIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Grass

characteristic: current vegetation

characteristic: description

text: Terrestrial biome

characteristic: environment (biome)

text: Rhizosphere

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2375 (pea)

characteristic: title

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

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text: Grass

characteristic: depth

text: Terrestrial biome

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text: Soil

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: Norfolk, Bawburgh Farm

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: Rhizosphere metatranscriptomics

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2376 (pea)


characteristic: ENA-CHECKLIST

text: JIC

text: public

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text: Grass

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text: Terrestrial biome

characteristic: environment (biome)

text: Rhizosphere

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2377 (pea)

characteristic: title

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

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text: JIC

characteristic: INSDC center name

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text: public

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text: Terrestrial biome

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text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: Norfolk, Bawburgh Farm

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: Rhizosphere metatranscriptomics

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2378 (oat)


characteristic: ENA-CHECKLIST

text: JIC

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text: Grass

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text: Terrestrial biome

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text: Rhizosphere

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text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2379 (oat)

characteristic: title

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: JIC

characteristic: INSDC center name

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text: Terrestrial biome

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text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: Norfolk, Bawburgh Farm

text: metagenome

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text: rhizosphere metagenome

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text: Rhizosphere metatranscriptomics

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text: Illumina

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text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2380 (oat)


characteristic: ENA-CHECKLIST

text: JIC

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text: Grass

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text: Terrestrial biome

characteristic: environment (biome)

text: Rhizosphere

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text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2381 (oat)

characteristic: title

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

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text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

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text: metagenome

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text: rhizosphere metagenome

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text: Rhizosphere metatranscriptomics

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text: Illumina

characteristic: sequencing method

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text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2382 (oat)


characteristic: ENA-CHECKLIST

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text: Grass

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text: Terrestrial biome

characteristic: environment (biome)

text: Rhizosphere

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text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2383 (wheat)

characteristic: title

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

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text: JIC

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characteristic: geographic location (elevation)

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text: Norfolk, Bawburgh Farm

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text: Rhizosphere metatranscriptomics

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text: rhizosphere metagenome

text: Illumina

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text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2384 (wheat)


characteristic: ENA-CHECKLIST

text: JIC

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text: Grass

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text: Terrestrial biome

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text: Rhizosphere

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characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2385 (wheat)

characteristic: title

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: JIC

characteristic: INSDC center name

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text: public

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text: Grass

characteristic: depth

text: Terrestrial biome

text: Rhizosphere

text: Soil

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: Norfolk, Bawburgh Farm

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: Rhizosphere metatranscriptomics

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2386 (wheat)


characteristic: ENA-CHECKLIST

text: JIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Grass

characteristic: current vegetation

characteristic: description

text: Terrestrial biome

characteristic: environment (biome)

text: Rhizosphere

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2387 (wheat)

characteristic: title

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Grass

characteristic: depth

text: Analysis of microbial community function in the rhizosphere of crop plants grown for 4 weeks

text: Terrestrial biome

text: Rhizosphere

text: Soil

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: Norfolk, Bawburgh Farm

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: Rhizosphere metatranscriptomics

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2388 (soil)


characteristic: ENA-CHECKLIST

text: JIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Grass

characteristic: current vegetation

characteristic: description

text: Terrestrial biome

characteristic: environment (biome)

text: Rhizosphere

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

text: 28.69 mg/kg nitrate (NO3-) 136.8 mg/kg phosphate (PO43-) 167.4mg/kg potassium (K+) 63.55 mg/kg magnesium (Mg2+)

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2389 (soil)

characteristic: title

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Grass

characteristic: depth

text: Terrestrial biome

text: Rhizosphere

text: Soil

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: Norfolk, Bawburgh Farm

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: Rhizosphere metatranscriptomics

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2390 (soil)


characteristic: ENA-CHECKLIST

text: JIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Grass

characteristic: current vegetation

characteristic: description

text: Terrestrial biome

characteristic: environment (biome)

text: Rhizosphere

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

text: Norfolk, Bawburgh Farm

characteristic: geographic location (region and locality)

text: metagenome

characteristic: miscellaneous parameter

text: rhizosphere metagenome

characteristic: ph

text: Rhizosphere metatranscriptomics

characteristic: sample weight for DNA extraction

text: rhizosphere metagenome

text: Illumina

text: soil

text: fresh; aired for 2 days, then sieved

characteristic: storage conditions (fresh/frozen/other)

text: Rhizosphere metatranscriptomics, sample LIB2391 (soil)

characteristic: title

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Grass

characteristic: depth

text: Terrestrial biome

text: Rhizosphere

text: Soil

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: Norfolk, Bawburgh Farm

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: Rhizosphere metatranscriptomics

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: fresh; aired for 2 days, then sieved

text: Rhizosphere metatranscriptomics, sample LIB2392 (soil)


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF LIVERPOOL

characteristic: Submitter Id

text: Pseudomonas aeruginosa Liverpool Epidemic Strain isolate genomic DNA from cystic fibrosis patient sputum sample

characteristic: description

text: United Kingdom

text: Cystic Fibrosis

characteristic: host health state

text: Human

characteristic: host scientific name

text: Portion of Sputum

characteristic: isolation source

text: 53.4000 N 3.0000 W

characteristic: lat lon

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

characteristic: serovar

text: Liverpool Epidemic Strain

characteristic: strain

text: LES CF sputum CF01 isolate 1

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF01 isolate 2


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF04 isolate 1


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: description

text: United Kingdom

text: Cystic Fibrosis

characteristic: host health state

text: Human

characteristic: host scientific name

text: Portion of Sputum

characteristic: isolation source

text: 53.4000 N 3.0000 W

characteristic: lat lon

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF04 isolate 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LIVERPOOL

text: public

text: United Kingdom

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

characteristic: serovar

text: Liverpool Epidemic Strain

characteristic: strain

text: LES CF sputum CF05 isolate 1

characteristic: title


characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: United Kingdom

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF05 isolate 2


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF06 isolate 1


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: description

text: United Kingdom

text: Cystic Fibrosis

characteristic: host health state

text: Human

characteristic: host scientific name

text: Portion of Sputum

characteristic: isolation source

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF06 isolate 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LIVERPOOL

text: public

text: United Kingdom

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

characteristic: lat lon

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

characteristic: serovar

text: Liverpool Epidemic Strain

characteristic: strain

text: LES CF sputum CF07 isolate 1


characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: United Kingdom

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF07 isolate 2

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: United Kingdom

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF08 isolate 1


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Cystic Fibrosis

characteristic: host health state

text: Human

characteristic: host scientific name

text: Portion of Sputum

characteristic: isolation source

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF08 isolate 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LIVERPOOL

text: public

text: United Kingdom

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

characteristic: lat lon

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: unknown (B58-like)

characteristic: serovar

text: Liverpool Epidemic Strain

text: LES CF sputum CF09 isolate 1


characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: United Kingdom

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

characteristic: strain

text: LES CF sputum CF09 isolate 2


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: Cystic Fibrosis

text: Human

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF10 isolate 1

characteristic: title


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Cystic Fibrosis

characteristic: host health state

text: Human

characteristic: host scientific name

text: Portion of Sputum

text: 53.4000 N 3.0000 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: unknown (B58-like)

text: Liverpool Epidemic Strain

text: LES CF sputum CF10 isolate 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Maastricht University Medical Centre

text: public

tag: Namespace:Maastricht University Medical Centre

characteristic: anonymized name

text: human

characteristic: common name

text: organic matter

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: sampling and storage

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Maastricht University Medical Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: RT

characteristic: description

text: organic matter

text: excreta

text: feces

text: Netherlands

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Homo sapiens

text: sampling and storage

text: Homo sapiens

text: pyrosequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Maastricht University Medical Centre

text: public

characteristic: anonymized name

text: human

characteristic: common name

text: swab

text: organic matter

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: sampling and storage

text: Homo sapiens

text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Maastricht University Medical Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: buffer

text: organic matter

text: excreta

text: feces

text: Netherlands

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: sampling and storage

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MHH

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: TCAG

characteristic: adapters

characteristic: collection date

text: Animal facility

text: specific pathogen-free

text: air

text: Germany

characteristic: geographic location (country and/or sea)

unit: week

characteristic: host age

text: colon

characteristic: host body habitat

text: colon

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter A

characteristic: host family relationship

text: C57BL/6 Trif wt/LPS2

characteristic: host genotype

characteristic: host infra specific name

text: not determined

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: AGACGCACTC

characteristic: multiplex identifiers

text: mouse gut metagenome

text: 8F (5'-AGAGTTTGATCCTGGCTCAG-3'), 541R (5'-WTTACCGCGGCTGCTGG-3'); sequencing primer: 541R

characteristic: pcr primers

text: TRIF signalling drives homeostatic intestinal epithelial antimicrobial peptide expression

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: intestinal microbiota of mouse TRIF_M2_het, colon sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TCAG

characteristic: adapters

characteristic: collection date

text: Animal facility

characteristic: environment (biome)

text: specific pathogen-free

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: colon

text: colon

text: house mouse

text: Litter C

text: C57BL/6 Trif wt/LPS2

text: male

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: ATCAGACACG

text: mouse gut metagenome

characteristic: organism

characteristic: project name

text: mouse gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rDNA

text: V1 - V3

text: intestinal microbiota of mouse TRIF_M20_het, colon sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TCAG

text: Animal facility

text: specific pathogen-free

text: air

text: Germany

characteristic: host age

text: colon

characteristic: host body habitat

text: colon

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter C

characteristic: host family relationship

text: C57BL/6 Trif wt/LPS2

characteristic: host genotype

characteristic: host infra specific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: ATATCGCGAG

characteristic: multiplex identifiers

text: mouse gut metagenome

characteristic: pcr primers

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: intestinal microbiota of mouse TRIF_M21_het, colon sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TCAG

characteristic: adapters

characteristic: collection date

text: Animal facility

characteristic: environment (biome)

text: specific pathogen-free

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: colon

text: colon

text: house mouse

text: Litter D

text: C57BL/6 Trif wt/LPS2

text: male

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: AGACGCACTC

text: mouse gut metagenome

characteristic: organism

characteristic: project name

text: mouse gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rDNA

text: V1 - V3

text: intestinal microbiota of mouse TRIF_M27_het, colon sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TCAG

text: Animal facility

text: specific pathogen-free

text: air

text: Germany

characteristic: host age

text: colon

characteristic: host body habitat

text: colon

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter F

characteristic: host family relationship

text: C57BL/6 Trif wt/LPS2

characteristic: host genotype

characteristic: host infra specific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: AGCACTGTAG

characteristic: multiplex identifiers

text: mouse gut metagenome

characteristic: pcr primers

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: intestinal microbiota of mouse TRIF_M34_het, colon sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TCAG

characteristic: adapters

characteristic: collection date

text: Animal facility

characteristic: environment (biome)

text: specific pathogen-free

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: colon

text: colon

text: house mouse

text: Litter A

text: C57BL/6 Trif wt/LPS2

text: female

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: AGCACTGTAG

text: mouse gut metagenome

characteristic: organism

characteristic: project name

text: mouse gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rDNA

text: V1 - V3

text: intestinal microbiota of mouse TRIF_M6_het, colon sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TCAG

text: Animal facility

text: specific pathogen-free

text: air

text: Germany

characteristic: host age

text: colon

characteristic: host body habitat

text: colon

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter B

characteristic: host family relationship

text: C57BL/6 Trif wt/LPS2

characteristic: host genotype

characteristic: host infra specific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: ATCAGACACG

characteristic: multiplex identifiers

text: mouse gut metagenome

characteristic: pcr primers

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: intestinal microbiota of mouse TRIF_M9_het, colon sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TCAG

characteristic: adapters

characteristic: collection date

text: Animal facility

characteristic: environment (biome)

text: specific pathogen-free

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: distal small intestine

text: distal small intestine

text: house mouse

text: Litter A

text: C57BL/6 Trif wt/LPS2

text: not determined

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: TCTCTATGCG

text: mouse gut metagenome

characteristic: organism

characteristic: project name

text: mouse gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rDNA

text: V1 - V3

text: intestinal microbiota of mouse TRIF_M2_het, distal small intestine sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TCAG

text: Animal facility

text: specific pathogen-free

text: air

text: Germany

characteristic: host age

text: distal small intestine

characteristic: host body habitat

text: distal small intestine

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter C

characteristic: host family relationship

text: C57BL/6 Trif wt/LPS2

characteristic: host genotype

characteristic: host infra specific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: AGCACTGTAG

characteristic: multiplex identifiers

text: mouse gut metagenome

characteristic: pcr primers

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: intestinal microbiota of mouse TRIF_M20_het, distal small intestine sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

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