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text: Glycans on mucosal surfaces play an important role in host-microbe interactions. Expression of the blood group-related glycosyltransferase ?-1,4-N-acetylgalactosaminyltransferase 2 (B4galnt2) is variable in wild mouse populations and influences the composition of the intestinal microbiota. In this study we show that the presence of B4galnt2 glycans in the intestinal epithelium increases susceptibility to Salmonella Typhimurium infection, leading to increased levels of pro-inflammatory cytokines and higher numbers of infiltrating immune cells. Further, changes in the intestinal microbiota correlated significantly with the development of inflammation and the associated B4galnt2 genotype. Specifically, the higher phylogenetic diversity of the intestinal microbiota present in B4galnt2-deficient mice before infection was predictive for a reduced inflammatory response to Salmonella Typhimurium. These data support the hypothesis that variation in B4galnt2 expression and associated microbial patterns alters host susceptibility to infectious diseases of the gastrointestinal tract and may explain the patterns of long term balancing selection observed in wild mouse populations.

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text: Salmonella infection in B4Galnt2 knock out mice and transgenic B4Galnt2 mice

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text: endothel= -; epithelia= +/-

text: Germany

text: Germany

text: host-associated

text: metagenome

characteristic: investigation type

text: CGACGTGACTCA

text: MOBIO PowerSoil DNA Isolation Kit

text: Mus musculus

characteristic: project name

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text: male

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: MPIEVB

text: public

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text: organism-associated habitat

text: organism-associated habitat

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characteristic: experimental factor

text: endothel= -; epithelia= +/-

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

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characteristic: host-associated environmental package

text: metagenome

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characteristic: pcr primers

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characteristic: ENA-CHECKLIST

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characteristic: External Id

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characteristic: INSDC center name

characteristic: INSDC first public

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characteristic: INSDC status

characteristic: SRA accession

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text: house mouse

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characteristic: disease status

text: organism-associated habitat

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text: organism-associated habitat

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text: genetic variation, bacterial disease

text: endothel= -; epithelia= +/-

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characteristic: experimental factor

text: endothel= -; epithelia= +/-

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characteristic: geographic location (country and/or sea)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

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characteristic: target gene

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characteristic: INSDC center name

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characteristic: SRA accession

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characteristic: ENA-LAST-UPDATE

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text: organism-associated habitat

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characteristic: experimental factor

text: endothel= -; epithelia= +/-

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characteristic: geographic location (country and/or sea)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

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text: host-associated

characteristic: host-associated environmental package

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characteristic: multiplex identifiers

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characteristic: target gene

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

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text: house mouse

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text: endothel= -; epithelia= +/-

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: MPIEVB

text: public

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text: organism-associated habitat

text: feces

text: genetic variation, bacterial disease

characteristic: experimental factor

text: endothel= -; epithelia= +/-

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text: Germany

characteristic: geographic location (country and/or sea)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

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text: host-associated

characteristic: host-associated environmental package

text: metagenome

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text: Mus musculus

text: pyrosequencing

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characteristic: target gene

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characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

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text: house mouse

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text: organism-associated habitat

characteristic: environment (biome)

text: organism-associated habitat

characteristic: environment (feature)

text: feces

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text: genetic variation, bacterial disease

text: endothel= -; epithelia= +/-

text: Germany

text: Germany

text: host-associated

text: metagenome

characteristic: investigation type

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characteristic: sequencing method

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: MPIEVB

text: public

text: house mouse

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text: organism-associated habitat

text: organism-associated habitat

text: feces

text: genetic variation, bacterial disease

characteristic: experimental factor

text: endothel= -; epithelia= +/-

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: TACAGATCGTCA

characteristic: multiplex identifiers

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characteristic: pcr primers

text: Mus musculus

text: pyrosequencing

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characteristic: target gene

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characteristic: ENA-CHECKLIST

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text: MPIEVB

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

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text: organism-associated habitat

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text: feces

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text: genetic variation, bacterial disease

text: endothel= -; epithelia= +/-

text: Germany

text: Germany

text: host-associated

text: metagenome

characteristic: investigation type

text: TACTCTCGTGCA

text: MOBIO PowerSoil DNA Isolation Kit

text: Mus musculus

characteristic: project name

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characteristic: sequencing method

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: MPIEVB

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text: house mouse

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text: organism-associated habitat

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text: genetic variation, bacterial disease

characteristic: experimental factor

text: endothel= -; epithelia= +/-

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

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text: host-associated

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characteristic: pcr primers

text: Mus musculus

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characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: organism-associated habitat

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text: organism-associated habitat

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text: genetic variation, bacterial disease

text: endothel= -; epithelia= -/-

text: Germany

text: Germany

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text: metagenome

characteristic: investigation type

text: TACGCTGTCTCA

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text: Mus musculus

characteristic: project name

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text: male

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characteristic: ENA-CHECKLIST

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text: MPIEVB

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text: organism-associated habitat

text: organism-associated habitat

text: feces

text: genetic variation, bacterial disease

characteristic: experimental factor

text: endothel= -; epithelia= -/-

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: TAGAGACGAGCA

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text: MOBIO PowerSoil DNA Isolation Kit

characteristic: nucleic acid extraction

text: Mus musculus

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text: Mus musculus

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characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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text: house mouse

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text: organism-associated habitat

characteristic: environment (biome)

text: organism-associated habitat

characteristic: environment (feature)

text: feces

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text: genetic variation, bacterial disease

text: endothel= -; epithelia= -/-

text: Germany

text: Germany

text: host-associated

text: metagenome

characteristic: investigation type

text: ATATCGCGAGCA

text: MOBIO PowerSoil DNA Isolation Kit

text: Mus musculus

characteristic: project name

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text: male

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: MPIEVB

text: public

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text: Salmonella infected

text: organism-associated habitat

text: organism-associated habitat

text: feces

text: genetic variation, bacterial disease

characteristic: experimental factor

text: endothel= -; epithelia= -/-

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: TAGTGTAGATCA

characteristic: multiplex identifiers

text: MOBIO PowerSoil DNA Isolation Kit

characteristic: nucleic acid extraction

text: Mus musculus

characteristic: organism

characteristic: pcr primers

text: Mus musculus

text: pyrosequencing

text: male

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text: 16S rRNA

characteristic: target gene

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characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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text: house mouse

characteristic: common name

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text: Streptomycin treated

characteristic: disease status

text: organism-associated habitat

characteristic: environment (biome)

text: organism-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: genetic variation, bacterial disease

text: endothel= -; epithelia= -/-

text: Germany

text: Germany

text: host-associated

text: metagenome

characteristic: investigation type

text: TCGTCGCTCGCA

text: MOBIO PowerSoil DNA Isolation Kit

text: Mus musculus

characteristic: project name

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

text: public

text: house mouse

text: Healthy

text: organism-associated habitat

text: organism-associated habitat

text: feces

text: genetic variation, bacterial disease

characteristic: experimental factor

text: endothel= -; epithelia= -/-

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: CGTGTCTCTACA

characteristic: multiplex identifiers

text: MOBIO PowerSoil DNA Isolation Kit

characteristic: nucleic acid extraction

text: Mus musculus

characteristic: organism

characteristic: pcr primers

text: Mus musculus

text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

unit: m

characteristic: depth

characteristic: description

text: terrestrial

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (elevation)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

text: public

text: terrestrial biome

text: grassland soil

text: anthrosol

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: pyrosequencing

text: soil

text: 16S rDNA

characteristic: target gene

characteristic: target subfragment

characteristic: title


text: UVEG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vibrio mediterranei CECT 621, type strain

characteristic: description

text: marine

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: sediment

characteristic: environmental package

text: Mediterranean Sea

text: mimarks-culture

text: Vibrio mediterranei

text: Vibrio mediterranei clade

text: Vibrio mediterranei

text: pyrosequencing

characteristic: source material identifiers

text: V. mediterranei 50


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UVEG

characteristic: INSDC center name

text: public

text: Vibrio thalassae CECT 8203, type strain

text: marine

text: surface sea water

text: sea water

text: water

text: Mediterranean Sea

characteristic: geographic location (latitude)

text: mimarks-culture

characteristic: investigation type

text: Vibrio thalassae

text: Vibrio mediterranei clade

characteristic: project name

text: Vibrio thalassae

text: pyrosequencing

characteristic: sequencing method

text: CECT 8203

characteristic: strain

text: V. thalassae MD16


text: UVEG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Vibrio mediterranei CECT 615

text: sea plankton

text: surface sea water

text: sea water

text: water

text: Mediterranean Sea

characteristic: geographic location (longitude)

text: mimarks-culture

text: Vibrio mediterranei

characteristic: organism

text: Vibrio mediterranei clade

text: Vibrio mediterranei

text: pyrosequencing

text: CECT 615

text: V. mediterranei 104

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NIOO-KNAW

text: public

characteristic: depth

characteristic: description

text: terrestrial

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Sweden

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: dilswe

text: soil metagenome

text: pyrosequencing

text: soil

characteristic: soil environmental package


characteristic: External Id

text: CBMSO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: viral metagenome

text: Artic fresh water viromes

characteristic: project name

text: viral metagenome

text: pyrosequencing

characteristic: sequencing method

text: Artic fresh water viromes

text: water

characteristic: water environmental package


MGS-HAV (P)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIMI

text: public

characteristic: SRA accession

text: MGS-HAV (P)

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: marine sediment

text: marine sediment

text: marine sediment

text: Italy

characteristic: geographic location (longitude)

text: metagenome

text: marine sediment metagenome

characteristic: organism

text: Ulixes

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Ulixes

characteristic: title


MGS-PRI (P)

characteristic: External Id

text: UNIMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MGS-PRI (P)

text: marine sediment

characteristic: environment (biome)

text: marine sediment

characteristic: environment (feature)

text: marine sediment

characteristic: environment (material)

text: Italy

characteristic: geographic location (elevation)

text: metagenome

text: marine sediment metagenome

text: Ulixes

text: marine sediment metagenome

text: sediment

text: pyrosequencing

text: Ulixes


MGS-MES (P)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIMI

text: public

characteristic: SRA accession

text: MGS-MES (P)

text: marine sediment

text: marine sediment

text: marine sediment

text: Italy

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: marine sediment metagenome

text: Ulixes

characteristic: project name

text: marine sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: Ulixes


MGS-ELF (P)

characteristic: External Id

text: UNIMI

text: public

text: MGS-ELF (P)

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: marine sediment

text: marine sediment

text: marine sediment

text: Greece

characteristic: geographic location (longitude)

text: metagenome

text: marine sediment metagenome

characteristic: organism

text: Ulixes

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Ulixes

characteristic: title


MGS-BIZ (P1)

text: UNIMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MGS-BIZ (P1)

text: marine sediment

characteristic: environment (biome)

text: marine sediment

characteristic: environment (feature)

text: marine sediment

characteristic: environment (material)

text: Tunisia

characteristic: geographic location (elevation)

text: metagenome

text: marine sediment metagenome

text: Ulixes

text: marine sediment metagenome

text: sediment

text: pyrosequencing

text: Ulixes


MGS-MCh (P)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIMI

text: public

characteristic: SRA accession

text: MGS-MCh (P)

text: marine sediment

text: marine sediment

text: marine sediment

text: Morocco

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: marine sediment metagenome

text: Ulixes

characteristic: project name

text: marine sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: Ulixes


MGS-ElMAX (P)

characteristic: External Id

text: UNIMI

text: public

text: MGS-ElMAX (P)

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: marine sediment

text: marine sediment

text: marine sediment

text: Egypt

characteristic: geographic location (longitude)

text: metagenome

text: marine sediment metagenome

characteristic: organism

text: Ulixes

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Ulixes

characteristic: title


MGS-AQ (P)

text: UNIMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MGS-AQ (P)

text: marine sediment

characteristic: environment (biome)

text: marine sediment

characteristic: environment (feature)

text: marine sediment

characteristic: environment (material)

text: Jordan

characteristic: geographic location (elevation)

text: metagenome

text: marine sediment metagenome

text: Ulixes

text: marine sediment metagenome

text: sediment

text: pyrosequencing

text: Ulixes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

tag: Namespace:CNRS and university of Rennes 1

text: metatranscriptome iron-rich microbial mat surface 1 sample 11

characteristic: description

text: freshwater biome

text: stream

text: microbial mat

text: France

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: microbial mat metagenome

text: anaerobic

characteristic: oxygenation status of sample

characteristic: ph

text: metatranscriptomics iron-rich microbial mat

characteristic: project name

text: microbial mat metagenome

text: pyrosequencing

characteristic: sequencing method

unit: ºC

characteristic: temperature

text: Sample11_Surface_1_iron_rich_microbial_mat


characteristic: External Id

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: metatranscriptome iron-rich microbial mat surface 1 sample 12

text: freshwater biome

characteristic: environment (biome)

text: stream

text: microbial mat

text: France

characteristic: geographic location (longitude)

text: metagenome

text: microbial mat/biofilm

text: microbial mat metagenome

characteristic: organism

text: anaerobic

text: microbial mat metagenome

text: pyrosequencing

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characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

text: metatranscriptome iron-rich microbial mat surface 1 sample 13

characteristic: description

text: freshwater biome

text: stream

characteristic: environment (feature)

text: microbial mat

characteristic: environment (material)

text: France

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: microbial mat metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: microbial mat metagenome

text: pyrosequencing

text: Sample13_Surface_1_iron_rich_microbial_mat


characteristic: External Id

text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: metatranscriptome iron-rich microbial mat surface 2 sample 41

text: freshwater biome

text: stream

text: microbial mat

text: France

text: metagenome

text: microbial mat/biofilm

text: microbial mat metagenome

text: anaerobic

characteristic: ph

characteristic: project name

text: microbial mat metagenome

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characteristic: sequencing method

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text: Sample41_Surface_2_iron_rich_microbial_mat


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

text: metatranscriptome iron-rich microbial mat surface 2 sample 42

characteristic: description

text: freshwater biome

characteristic: environment (biome)

text: stream

characteristic: environment (feature)

text: microbial mat

characteristic: environment (material)

text: France

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: metagenome

text: microbial mat/biofilm

text: microbial mat metagenome

characteristic: organism

text: anaerobic

text: microbial mat metagenome

text: pyrosequencing

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characteristic: title


characteristic: External Id

text: CNRS and university of Rennes 1

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: metatranscriptome iron-rich microbial mat surface 2 sample 43

text: freshwater biome

text: stream

text: microbial mat

text: France

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: microbial mat metagenome

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characteristic: oxygenation status of sample

text: microbial mat metagenome

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text: Sample43_Surface_2_iron_rich_microbial_mat


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

text: metatranscriptome iron-rich microbial mat depth 1 sample 21

characteristic: description

text: freshwater biome

characteristic: environment (biome)

text: stream

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text: microbial mat

characteristic: environment (material)

text: France

text: metagenome

text: microbial mat/biofilm

text: microbial mat metagenome

text: anaerobic

characteristic: ph

characteristic: project name

text: microbial mat metagenome

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characteristic: sequencing method

characteristic: temperature

text: Sample21_Depth_1_iron_rich_microbial_mat


characteristic: External Id

text: CNRS and university of Rennes 1

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: metatranscriptome iron-rich microbial mat depth 1 sample 22

text: freshwater biome

text: stream

text: microbial mat

text: France

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: metagenome

text: microbial mat/biofilm

text: microbial mat metagenome

characteristic: organism

text: anaerobic

text: microbial mat metagenome

text: pyrosequencing

text: Sample22_Depth_1_iron_rich_microbial_mat

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

text: metatranscriptome iron-rich microbial mat depth 1 sample 23

characteristic: description

text: freshwater biome

characteristic: environment (biome)

text: stream

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text: microbial mat

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: microbial mat metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: microbial mat metagenome

text: pyrosequencing

text: Sample23_Depth_1_iron_rich_microbial_mat


characteristic: External Id

text: CNRS and university of Rennes 1

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: metatranscriptome iron-rich microbial mat depth 2 sample 31

text: freshwater biome

text: stream

text: microbial mat

text: France

text: metagenome

text: microbial mat/biofilm

text: microbial mat metagenome

text: anaerobic

characteristic: ph

text: metatranscriptomics iron-rich microbial mat

characteristic: project name

text: microbial mat metagenome

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: Sample31_Depth_2_iron_rich_microbial_mat


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

text: metatranscriptome iron-rich microbial mat depth 2 sample 32

characteristic: description

text: freshwater biome

characteristic: environment (biome)

text: stream

characteristic: environment (feature)

text: microbial mat

characteristic: environment (material)

text: France

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: metagenome

text: microbial mat/biofilm

text: microbial mat metagenome

characteristic: organism

text: anaerobic

text: microbial mat metagenome

text: pyrosequencing

text: Sample32_Depth_2_iron_rich_microbial_mat

characteristic: title


characteristic: External Id

text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: metatranscriptome iron-rich microbial mat depth 2 sample 33

text: freshwater biome

text: stream

text: microbial mat

text: France

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: microbial mat metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: microbial mat metagenome

text: pyrosequencing

text: Sample33_Depth_2_iron_rich_microbial_mat


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

text: metatranscriptome iron-rich microbial mat depth 3 sample 51

characteristic: description

text: freshwater biome

characteristic: environment (biome)

text: stream

characteristic: environment (feature)

text: microbial mat

characteristic: environment (material)

text: France

text: metagenome

text: microbial mat/biofilm

text: microbial mat metagenome

text: anaerobic

characteristic: ph

characteristic: project name

text: microbial mat metagenome

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: Sample51_Depth_3_iron_rich_microbial_mat


characteristic: External Id

text: CNRS and university of Rennes 1

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: metatranscriptome iron-rich microbial mat depth 3 sample 52

text: freshwater biome

text: stream

text: microbial mat

text: France

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: metagenome

text: microbial mat/biofilm

text: microbial mat metagenome

characteristic: organism

text: anaerobic

text: microbial mat metagenome

text: pyrosequencing

text: Sample52_Depth_3_iron_rich_microbial_mat

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CSIRO

text: public

characteristic: SRA accession

text: cropland biome

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Australia

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Suppressive soils

text: soil metagenome

text: Illumina HiSeq

text: soil

characteristic: soil environmental package

text: Disease suppressive soils


characteristic: External Id

text: CSIRO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Non-suppressive soil

characteristic: description

text: cropland biome

text: field

text: soil

text: Australia

text: metagenome

text: soil metagenome

text: Suppressive soils

characteristic: project name

text: soil metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: soil

text: Disease suppressive soils


Dip in the gene pool_S15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF BERGEN

text: public

text: Dip in the gene pool_S15

tag: Namespace:UNIVERSITY OF BERGEN

characteristic: collection date

text: marine

text: fjord

text: water

text: North Sea

characteristic: geographic location (depth)

characteristic: geographic location (longitude)

text: metagenome

text: marine metagenome

characteristic: organism

text: Dip in the gene pool

text: marine metagenome

text: Illumina

text: EhV metagenome

characteristic: title

text: water

characteristic: water environmental package


characteristic: External Id

text: UIO

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: 3-45micron phytoplankton

characteristic: environment (biome)

text: Coast

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Norway

characteristic: geographic location (latitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: HAPTODIV

text: marine metagenome

text: GS-FLX Titanium 454 pyrosequencing

text: Diversity of haptophytes in Oslofjorden

text: water


characteristic: ENA-CHECKLIST

text: UIO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: 3-20 micron phytoplankton

text: Coast

text: Seawater

text: Norway

text: mimarks-survey

text: marine metagenome

text: HAPTODIV

characteristic: project name

text: marine metagenome

text: GS FLX Titanium 454 pyrosequencing

characteristic: sequencing method

text: Diversity of haptophytes in Skagerrak revealed by 454 pyrosequencing

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UIO

text: public

characteristic: collection date

text: 3-45 micron phytoplankton

text: Coast

text: Seawater

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (longitude)

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: HAPTODIV

text: marine metagenome

text: GS FLX Titanium 454 pyrosequencing

characteristic: title

text: water


characteristic: External Id

text: UIO

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: 0.8-3 micron phytoplankton

characteristic: environment (biome)

text: Coast

characteristic: environment (feature)

text: Seawater

characteristic: environment (material)

text: Norway

text: mimarks-survey

text: marine metagenome

text: HAPTODIV

text: marine metagenome

text: GS FLX Titanium 454 pyrosequencing

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

text: UIO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: 0.8-3micron phytoplankton

text: Coast

text: Seawater

text: Norway

characteristic: geographic location (latitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: HAPTODIV

text: marine metagenome

text: GS FLX Titanium 454 pyrosequencing

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UIO

text: public

characteristic: collection date

text: > 3 micron phytoplankton

text: Coast

text: Seawater

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (longitude)

text: mimarks-survey

text: marine metagenome

text: HAPTODIV

characteristic: project name

text: marine metagenome

text: GS FLX Titanium 454 pyrosequencing

characteristic: sequencing method

text: water


text: Tampa

characteristic: Culture origin

characteristic: External Id

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:STATION BIOLOGIQUE DE ROSCOFF

characteristic: environment (biome)

characteristic: environment (feature)

text: alga

characteristic: experimental factor

text: USA

text: Tam 2b

characteristic: host subject id

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text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: DNA - MN Nucleospin II

characteristic: nucleic acid extraction

text: algae metagenome

characteristic: organism

text: Ectobact

characteristic: salinity

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria

characteristic: title


text: Terenez

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (material)

text: alga

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ec 243

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: DNA - MN Nucleospin II

text: algae metagenome

text: Ectobact

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria


text: Pill

characteristic: Culture origin

characteristic: External Id

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: environment (biome)

characteristic: environment (feature)

text: alga

characteristic: experimental factor

text: United Kingdom

text: Bri 1

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: DNA - MN Nucleospin II

text: algae metagenome

text: Ectobact

characteristic: project name

text: algae metagenome

text: Illumina 2x250

characteristic: sequencing method

text: Ectocarpus sp. associated bacteria


text: Muizenberg

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: alga

text: South Africa

text: RSA 001

text: host-associated

text: mimarks-survey

text: DNA - MN Nucleospin II

characteristic: nucleic acid extraction

text: algae metagenome

characteristic: organism

text: Ectobact

characteristic: salinity

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria

characteristic: title


text: Terenez

characteristic: Culture origin

characteristic: External Id

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: alga

characteristic: experimental factor

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ec 244

characteristic: host subject id

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: DNA - MN Nucleospin II

text: algae metagenome

text: Ectobact

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria


text: Gr�nh�gen

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: alga

text: Sweden

text: Grh 6c

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: DNA - MN Nucleospin II

text: algae metagenome

text: Ectobact

characteristic: project name

text: algae metagenome

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characteristic: sequencing method

text: Ectocarpus sp. associated bacteria


text: Tampa

characteristic: Culture origin

characteristic: External Id

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: alga

characteristic: experimental factor

text: USA

text: Tam 18b

text: host-associated

text: mimarks-survey

text: DNA - MN Nucleospin II

characteristic: nucleic acid extraction

text: algae metagenome

characteristic: organism

text: Ectobact

characteristic: salinity

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria

characteristic: title


text: Port Aransas

characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: alga

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Par 10b

characteristic: host subject id

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: DNA - MN Nucleospin II

text: algae metagenome

text: Ectobact

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria


text: Port Aransas

characteristic: Culture origin

characteristic: External Id

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: alga

characteristic: experimental factor

text: USA

text: Par 1027

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: DNA - MN Nucleospin II

text: algae metagenome

text: Ectobact

characteristic: project name

text: algae metagenome

text: Illumina 2x250

characteristic: sequencing method

text: Ectocarpus sp. associated bacteria


text: Pill

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: alga

text: United Kingdom

text: Bri 3

text: host-associated

text: mimarks-survey

text: DNA - MN Nucleospin II

characteristic: nucleic acid extraction

text: algae metagenome

characteristic: organism

text: Ectobact

characteristic: salinity

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria

characteristic: title


text: Beaufort

characteristic: Culture origin

characteristic: External Id

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: alga

characteristic: experimental factor

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bft 1a

characteristic: host subject id

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: DNA - MN Nucleospin II

text: algae metagenome

text: Ectobact

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria


text: Kingsbridge

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: alga

text: United Kingdom

text: Ec 242

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: DNA - MN Nucleospin II

text: algae metagenome

text: Ectobact

characteristic: project name

text: algae metagenome

text: Illumina 2x250

characteristic: sequencing method

text: Ectocarpus sp. associated bacteria


text: Hopkins River

characteristic: Culture origin

characteristic: External Id

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: alga

characteristic: experimental factor

text: Australia

text: Ec 371

text: host-associated

text: mimarks-survey

text: DNA - MN Nucleospin II

characteristic: nucleic acid extraction

text: algae metagenome

characteristic: organism

text: Ectobact

characteristic: salinity

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria

characteristic: title


text: San Juan de Marcona

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STATION BIOLOGIQUE DE ROSCOFF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: alga

text: Peru

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ec 32

characteristic: host subject id

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: DNA - MN Nucleospin II

text: algae metagenome

text: Ectobact

text: algae metagenome

text: Illumina 2x250

text: Ectocarpus sp. associated bacteria


text: Port Aransas

characteristic: Culture origin

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text: STATION BIOLOGIQUE DE ROSCOFF

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