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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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characteristic: INSDC center name

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text: public

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text: False

text: 1/26/15 12:00

text: bioreactor metagenome

text: GAZ:United States of America

text: True

text: ENVO:urban biome

text: ENVO:anaerobic bioreactor

text: ENVO:anaerobic sludge

text: True

text: True

characteristic: latitude

characteristic: longitude

text: bioreactor metagenome

characteristic: phase

text: Ithaca

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text: True

text: True

text: completed

text: anaerobic reactor biomass

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text: bioreactor metagenome


status: PUBLIC

tag: attribute

text: UCSDMI

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characteristic: altitude

text: False

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text: bioreactor metagenome

characteristic: common name

text: GAZ:United States of America

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text: ENVO:anaerobic sludge

characteristic: env matter

text: True

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characteristic: host subject id

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text: True

text: True

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text: completed

characteristic: sample size

text: anaerobic reactor biomass

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text: sequenced (16S)

text: bioreactor metagenome

text: Conversion of L-lactate into n-caproate by a continuously fed reactor microbiome

characteristic: title

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: bioreactor metagenome

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characteristic: latitude

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characteristic: host subject id

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text: anaerobic reactor biomass

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characteristic: host taxid

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characteristic: latitude

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characteristic: host taxid

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text: Ithaca

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text: True

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text: anaerobic reactor biomass

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text: UCSDMI

text: public

characteristic: altitude

text: False

text: 6/19/15 12:00

text: bioreactor metagenome

characteristic: common name

text: GAZ:United States of America

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text: True

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text: True

text: True

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text: Ithaca

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text: True

text: True

text: completed

characteristic: sample size

text: anaerobic reactor biomass

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text: sequenced (16S)

text: bioreactor metagenome

characteristic: title


text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


wsebi

text: AAU, India

text: public

text: wsebi

tag: Namespace:AAU, India

text: Bos indicus

characteristic: organism

text: Bos indicus


text: Perio-UKM

text: public

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: CHINESE ACADEMIC OF SCIENCE

text: public

tag: Namespace:CHINESE ACADEMIC OF SCIENCE

characteristic: collection date

unit: m

characteristic: depth

text: cushion plants

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: microbial elevational distributions

characteristic: project name

text: soil metagenome

text: High-throughput sequencing

characteristic: sequencing method

text: soil

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text: soil bacterial communities


characteristic: ENA-CHECKLIST

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text: CHINESE ACADEMIC OF SCIENCE

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: alpine meadow

text: soil

text: soil

text: China

text: metagenome

text: soil metagenome

text: microbial elevational distributions

text: soil metagenome

text: High-throughput sequencing

text: soil

text: soil bacterial communities

characteristic: title


text: CHINESE ACADEMIC OF SCIENCE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: alpine meadow

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: metagenome

text: soil metagenome

characteristic: organism

text: microbial elevational distributions

text: soil metagenome

text: High-throughput sequencing

text: soil

text: soil bacterial communities


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CHINESE ACADEMIC OF SCIENCE

text: public

text: swamp meadow

text: soil

text: soil

text: China

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

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text: soil metagenome

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characteristic: ENA-LAST-UPDATE

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text: CHINESE ACADEMIC OF SCIENCE

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

text: alpine shrub

text: soil

text: soil

text: China

text: metagenome

text: soil metagenome

text: microbial elevational distributions

text: soil metagenome

text: High-throughput sequencing

text: soil

text: soil bacterial communities

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

tag: Namespace:FUNCTIONAL GENOMICS CENTER ZURICH

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus


Sporomusa sphaeroides DSM 2875

text: UNIVERSITY OF WARWICK

text: public

text: Sporomusa sphaeroides DSM 2875

tag: Namespace:UNIVERSITY OF WARWICK

text: Sporomusa sphaeroides DSM 2875

text: Sporomusa sphaeroides DSM 2875

text: Draft Genome of Sporomusa sphaeroides DSM 2875


text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

text: public

characteristic: collection date

text: German H5N8 outbreak sample provided by FLI for COMPARE pilot study Influenza NGS sequencing

text: Germany

characteristic: geographic location (country and/or sea)

text: Mecklenburg-Western Pomerania

characteristic: geographic location (region and locality)

text: Turkey

characteristic: host common name

text: dead

characteristic: host disease outcome

text: diseased

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

characteristic: influenza strain unique number

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: A

characteristic: influenza virus type

text: Influenza A virus

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Influenza A virus

characteristic: strain

text: FLI H5N8 Pilot

text: A/turkey/Germany/AR2485-L01478/2014 Passage: Egg

characteristic: virus identifier


text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

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characteristic: External Id

text: SC

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: Universiteit Gent

text: public

tag: Namespace:Universiteit Gent

characteristic: collection date

text: rhizosphere metagenome

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Durum wheat


GRC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GRC

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Canada

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Durum wheat


GRPC

text: Universiteit Gent

text: public

text: GRPC

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Durum wheat

characteristic: title


GRPT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: GRPT

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Durum wheat


GRT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GRT

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Canada

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Durum wheat


ROOTS-Gb

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: ROOTS-Gb

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Durum wheat

characteristic: title


ROOTS-Gd

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: ROOTS-Gd

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Durum wheat


RP-G

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: RP-G

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Canada

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Durum wheat


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Potato

characteristic: title


NS-MS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: NS-MS

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Potato


ROOTS-GENT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ROOTS-GENT

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Belgium

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Potato


ROOTS-STOLON

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: ROOTS-STOLON

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Potato

characteristic: title


RP-GENT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: RP-GENT

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Potato


RP-STOLON

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: RP-STOLON

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Belgium

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Potato


GeRPC G1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: GeRPC G1

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Potato

characteristic: title


GeRPC G2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: GeRPC G2

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Potato


GeRPT G3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GeRPT G3

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Belgium

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Potato


GeRPT G4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: GeRPT G4

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Potato

characteristic: title


GeRC G1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: GeRC G1

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Potato


GeRC G2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GeRC G2

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Belgium

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Potato


GeRT G3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: GeRT G3

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Potato

characteristic: title


GeRT G4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: GeRT G4

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Potato


NS-it

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NS-it

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Italy

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Soybean


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Soybean

characteristic: title


NRC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: NRC

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Soybean


NRPC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NRPC

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Italy

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Soybean


NRPT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: NRPT

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Soybean

characteristic: title


NRT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: NRT

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Soybean


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Switzerland

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Bread wheat


ROOTS-E

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: ROOTS-E

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Bread wheat

characteristic: title


RP-E

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: RP-E

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Bread wheat


ERC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ERC

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Switzerland

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Bread wheat


ERPC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

text: public

text: ERPC

text: rhizosphere metagenome

characteristic: common name

characteristic: description

text: anthropogenic habitat

characteristic: environment (biome)

text: cultivated habitat

characteristic: environment (feature)

text: cultured habitat

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Bread wheat

characteristic: title


ERPT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: ERPT

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: CulSel

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Bread wheat


ERT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universiteit Gent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ERT

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere metagenome

text: anthropogenic habitat

text: cultivated habitat

text: cultured habitat

text: Switzerland

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: CulSel

text: rhizosphere metagenome

text: Illumina

text: Bread wheat


Myco Madness

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universiteit Gent

text: public

text: Myco Madness

text: probiotic metagenome

characteristic: common name

text: Myco Madness

characteristic: description

text: agricultural environmental material

characteristic: environment (biome)

text: anthropogenic environmental material

characteristic: environment (feature)

text: biological product

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: probiotic metagenome

text: plant-associated

text: CulSel

text: probiotic metagenome

text: Illumina

text: probiotic metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPICE

text: public

text: adult

characteristic: dev stage

text: Nicrophorus vespilloides

characteristic: organism

text: Nicrophorus vespilloides

text: female

characteristic: sex

text: Nicrophorus female transcriptome


text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WEIZMANN INSTITUE OF SCIENCE

text: Grown in LB media at 37c to OD600 = 0.1-0.2; no antibiotics

text: Bacillus subtilis subsp. subtilis str. 168


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GENOMNIA SRL

text: public

tag: Namespace:GENOMNIA SRL

characteristic: Submitter Id

text: spermatozoa

characteristic: cell type

text: human

characteristic: common name

text: Human Sperm RNA Samples from two fertile donors

text: Homo sapiens

text: Homo sapiens

text: male

text: Human Sperm RNA


text: PHE

text: public

characteristic: description

text: Legionella pneumophila

text: Legionella pneumophila


text: WDRC KAUST

text: public

tag: Namespace:WDRC KAUST

characteristic: collection date

text: Wastewater biofilm

characteristic: environment (biome)

text: Aerobic

characteristic: environment (feature)

text: Biofilm

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: metagenome

text: Triazole-Pd

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Triazole-Pd

characteristic: title


roots control 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: roots control 1

tag: Namespace:Estacion Experimental de Aula Dei_Spanish National Research Council (CSIC)

text: peach

text: Prunus persica

characteristic: organism

text: Prunus persica

text: roots

characteristic: tissue lib

text: RNA extracted from the GF677 rootstock of control plants


roots control 2

text: Estacion Experimental de Aula Dei_Spanish National Research Council (CSIC)

text: public

text: roots control 2

characteristic: Submitter Id

text: peach

characteristic: common name

text: Prunus persica

text: Prunus persica

text: roots

text: RNA extracted from the rootstock GF677 of control plants


roots control 3

text: public

text: roots control 3

text: peach

text: Prunus persica

text: Prunus persica

text: roots


roots drought 1

text: public

text: roots drought 1

text: peach

text: Prunus persica

text: Prunus persica

text: roots

text: RNA extracted from the rootstock GF677 of treated plants


roots drought 2

text: public

text: roots drought 2

text: peach

text: Prunus persica

text: Prunus persica

text: roots


roots drought 3

text: public

text: roots drought 3

text: peach

text: Prunus persica

text: Prunus persica

text: roots


leaves control 1

text: public

text: leaves control 1

text: peach

text: Prunus persica

text: Prunus persica

text: leaves

text: RNA extracted from the leaves of the control


leaves control 2

text: public

text: leaves control 2

text: peach

text: Prunus persica

text: Prunus persica

text: leaves


leaves control 3

text: public

text: leaves control 3

text: peach

text: Prunus persica

text: Prunus persica

text: leaves


leaves drought 1

text: public

text: leaves drought 1

text: peach

text: Prunus persica

text: Prunus persica

text: leaves

text: RNA extracted from the leaves of water defıct plants


leaves drought 2

text: public

text: leaves drought 2

text: peach

text: Prunus persica

text: Prunus persica

text: leaves


leaves drought 3

text: public

text: leaves drought 3

text: peach

text: Prunus persica

text: Prunus persica

text: leaves


text: Centre for Food Safety

text: public

tag: Namespace:Centre for Food Safety

text: ESBL-producing Escherichia coli from pigs

characteristic: description

text: Escherichia coli

text: Escherichia coli


text: Centre for Food Safety

text: public

text: ESBL-producing Escherichia coli

text: Escherichia coli

text: Escherichia coli


Caenorhabditis sp. 21

text: BANG

text: public

text: Caenorhabditis sp. 21

text: Caenorhabditis sp. 21 LS-2015

text: Caenorhabditis sp. 21 LS-2015

text: Caenorhabditis sp. 21


Caenorhabditis sp. 26

text: BANG

text: public

text: Caenorhabditis sp. 26

text: Caenorhabditis sp. 26

text: Caenorhabditis sp. 26 LS-2015

text: Caenorhabditis sp. 26 LS-2015

characteristic: strain

text: Caenorhabditis sp. 26


text: GeneWiz

text: public

characteristic: collection date

text: coral reef

characteristic: environment (biome)

text: benthic niches

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: 16° 50‘ N

characteristic: geographic location (latitude)

text: 112°20’ E

characteristic: geographic location (longitude)

text: benthic sampling sites of coral reef ecosystem

characteristic: host body habitat

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Candidatus Synechococcus spongiarum

text: Genome binning of cyanobacterial symbionts in Theonella swinhoei from South China Sea

characteristic: project name

text: Candidatus Synechococcus spongiarum

text: pyrosequencing

characteristic: sequencing method

text: Comparative genomic analysis of cyanobacterial symbionts in geographically distant Theonella swinhoei


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GeneWiz

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coral reef

text: benthic niches

text: water

text: China

text: host-associated

text: metagenome

text: Candidatus Entotheonella palauensis

characteristic: organism

text: Comparative genomic analysis of Entotheonella gemina from geographically distant Theonella swinhoei

text: Candidatus Entotheonella palauensis

text: pyrosequencing

characteristic: title


text: GeneWiz

text: public

characteristic: collection date

text: Metagenome binning of Entotheonella factor and improved annotation

characteristic: description

text: coral reef

characteristic: environment (biome)

text: benthic niches

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: Candidatus Entotheonella palauensis

text: Comparative genomic analysis of Entotheonella factor

text: Candidatus Entotheonella palauensis

text: pyrosequencing


Caenorhabditis sp. 31

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BANG

text: public

text: Caenorhabditis sp. 31

text: Caenorhabditis sp. 31 LS-2015

text: Caenorhabditis sp. 31 LS-2015

characteristic: strain

text: Caenorhabditis sp. 31


Caenorhabditis sp. 32

text: BANG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Caenorhabditis sp. 32

text: Caenorhabditis sp. 32 LS-2015

text: Caenorhabditis sp. 32 LS-2015

text: Caenorhabditis sp. 32


text: public

tag: Namespace:Austrian Agency for Health and Food Safety

characteristic: Submitter Id

characteristic: description

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

characteristic: title


text: Austrian Agency for Health and Food Safety

text: public

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC6, Lineage I

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC3, Lineage I

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC2, Lineage I

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC121, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC26, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC9, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC1, Lineage I

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC31, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC204, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC4, Lineage I

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC224, Lineage I

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC14, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST ST517, Lineage I

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC37, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC451, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC475, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC8, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC101, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC155, Lineage II

text: Listeria monocytogenes

text: Listeria monocytogenes


text: public

text: MLST CC2, Lineage I

text: Listeria monocytogenes

text: Listeria monocytogenes


Caenorhabditis sp. 39

text: BANG

text: public

text: Caenorhabditis sp. 39

text: Strain: NIC564

text: Caenorhabditis sp. 39 LS-2015

text: Caenorhabditis sp. 39 LS-2015

text: Caenorhabditis sp. 39


text: UNIVERSITY OF MANCHESTER

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: Cloned partial trn-L sequence from the PCR product of a DNA extract from a pottery swab sample.

text: Poaceae environmental sample

text: Poaceae environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L DNA sequence from the PCR product of a DNA extract from a pottery swab sample.

text: Poaceae environmental sample

text: Poaceae environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned partial trn-L DNA sequence from a PCR product of the DNA extract of a pottery swab sample.

text: Poaceae environmental sample

text: Poaceae environmental sample


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned non specifically amplified sequence from a PCR product of the DNA extract of a pottery swab sample

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned PCR product amplified from the DNA extract of a pottery swab sample,

text: uncultured beta proteobacterium

text: uncultured beta proteobacterium


text: AAU, India

text: public

text: Bos indicus

text: Bos indicus


text: public

tag: Namespace:Advanced Water Management Centre, University of Queensland.

characteristic: collection date

text: Wastewater

characteristic: environment (biome)

text: Activated Sludge

characteristic: environment (feature)

text: Reactor

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: 27° 28' 16 S

text: 153° 01' 27 E

text: metagenome

characteristic: investigation type

text: Nitrosomonas europaea ATCC 19718

text: AOBNOB

characteristic: project name

text: Nitrosomonas europaea ATCC 19718

text: NGS

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Cloned partial trn-L DNA sequence, from the DNA extract of a pottery swab sample.

text: Poaceae environmental sample

text: Poaceae environmental sample


Caenorhabditis sp. 43

text: BANG

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Caenorhabditis sp. 43

characteristic: Submitter Id

text: strain: NIC1070

characteristic: description

text: Caenorhabditis sp. 43 LS-2015

characteristic: organism

text: Caenorhabditis sp. 43 LS-2015

characteristic: strain

text: Caenorhabditis sp. 43


text: public

tag: Namespace:FONDAZIONE EDMUND MACH - COMPUTATIONAL BIOLOGY DEP

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Rett syndrome gut microbiota

text: metagenome

text: 454 GS FLX Titanium

text: Characterization of the Rett syndrome gut microbiota

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FONDAZIONE EDMUND MACH - COMPUTATIONAL BIOLOGY DEP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Italy

text: human-gut

text: metagenome

text: metagenome

text: Rett syndrome gut microbiota

characteristic: project name

text: metagenome

text: 454 GS FLX Titanium

characteristic: sequencing method


Caenorhabditis sp. 40

text: BANG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Caenorhabditis sp. 40

characteristic: Submitter Id

characteristic: description

text: Caenorhabditis sp. 40 LS-2015

characteristic: organism

text: Caenorhabditis sp. 40 LS-2015

characteristic: strain

text: Caenorhabditis sp. 40


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: control group, day 1


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: inoculated group, day 1


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: control group, day 2


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: inoculated group, day 2


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: control group, day 3


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: inoculated group, day 3


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: control group, day 4


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: inoculated group, day 4


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: control group, day 7


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: inoculated group, day 7


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: control group, day 11


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: inoculated group, day 11


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: control group, day 18


text: ETHZ

text: public

text: Phialocephala subalpina

text: Phialocephala subalpina

text: inoculated group, day 18


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE

text: three-spined stickleback

text: Adult lab-reared fish, F2 generation; held at: 17°C, dam developmentally acclimated to: 17°C, granddam acutely acclimated to17°C

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Three-spined stickleback pectoral fin muscle transcriptome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE

text: public

text: three-spined stickleback

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus


characteristic: External Id

characteristic: INSDC center name

text: public

text: three-spined stickleback

text: Adult lab-reared fish, F2 generation; held at: 21°C, dam developmentally acclimated to: 17°C, granddam acutely acclimated to17°C

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: three-spined stickleback

text: Adult lab-reared fish, F2 generation; held at: 17°C, dam developmentally acclimated to: 17°C, granddam acutely acclimated to 21°C

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus


text: public

text: three-spined stickleback

text: Adult lab-reared fish, F2 generation; held at: 21°C, dam developmentally acclimated to: 17°C, granddam acutely acclimated to 21°C

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus


text: public

text: three-spined stickleback

text: Adult lab-reared fish, F2 generation; held at: 21°C, dam developmentally acclimated to: 21°C, granddam acutely acclimated to17°C

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus


text: public

text: three-spined stickleback

text: Adult lab-reared fish, F2 generation; held at: 17°C, dam developmentally acclimated to: 21°C, granddam acutely acclimated to 17°C

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus


text: public

text: three-spined stickleback

text: Adult lab-reared fish, F2 generation; held at: 17°C, dam developmentally acclimated to: 17°C, granddam acutely acclimated to21°C

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus


text: public

text: three-spined stickleback

text: Adult lab-reared fish, F2 generation; held at: 21°C, dam developmentally acclimated to: 21°C, granddam acutely acclimated to 17°C

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus


text: public

text: three-spined stickleback

text: Adult lab-reared fish, F2 generation; held at: 17°C, dam developmentally acclimated to: 21°C, granddam acutely acclimated to21°C

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus


text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned non-specifically amplified DNA sequence amplified from a pottery swab sample DNA extract

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

text: public

text: fava bean

text: Cloned partial trn-L cpDNA sequence amplified from a pottery swab DNA extract

text: Vicia faba

text: Vicia faba


E-MTAB-4367:AMKL26 ETO2

text: public

text: E-MTAB-4367:AMKL26 ETO2

tag: Namespace:INSERM U1170, Equipe Labellisee Ligue Contre le Cancer, Villejuif, France Institut Gustave Roussy, Villejuif, France  Universite Paris Diderot, Paris, France

text: ArrayExpress

characteristic: broker name

text: Human patient's cells from xenograft

characteristic: cell type

text: human

text: Protocols: The human MO7e and MO7e-KI AMKL cell lines were cultured in MEM- supplemented with 20% FBS, Penicillin (100U/mL)-Streptomycin (100g/mL) and 2mM L-Glutamine (Gibco), and 5 ng/ml of human GM-CSF (PeproTech). HEL cells are cultured in RPMI1640 supplemented with 10% FBS, Penicillin (100U/mL)-Streptomycin (100g/mL), 2mM L-Glutamine (Gibco). AMKL cells obtained directly from immunodeficient animals or after purification by flow cytometry were cultured in RPMI 1640 medium supplemented with 20% FBS, Penicillin (100U/mL)-Streptomycin (100g/mL) and 2mM L-Glutamine (Gibco), and 10 ng/ml each of human SCF, IL3, IL6, IL11, TPO, 10U/ml EPO and 5 ng/ml of GM-CSF (PeproTech). ChIP protocol was adapted from the MagnaChIP kit protocol (Millipore). Cells (AMKL and MO7e-KI) were fixed with 1% formaldehyde, lysed with Cell Lysis and then Nuclear Lysis buffers respecting concentration of 20.106 cells per mL, and finally sonicated (30-min cycle on Covaris apparatus; KBioscience). Sheared chromatin was immunoprecipitated overnight using the following antibodies: anti-CBFA2T3 (Abcam, ab33072), anti-ERG (Santa Cruz ; SC354), anti-GATA3 (Santa Cruz ; mix 50/50 of SC268X and SC269X), anti-H3K27ac (ActiveMotif, #39133), anti-H3K4me1 (Diagenode ; #C15410037), anti-H3K4me3 (Diagenode, #C15410003), anti-H3K27me3 (Cell Signaling, #9733S) and rabbit IgG (Upstate, #12-370). 1/10 of the sheared chromatin was used as a reference (Input). Immune complex collection was realized with Protein G Sepharose (Sigma-Aldrich; P3296), 1h30 at +4C. For GFP-ChIP, GFP-Trap agarose beads were used (Chromotek). Rinses were done according to MagnaChIP kit protocol with Low salt, High salt and LiCL immune complex wash buffers. Finally, elution was realized according the IPure Kit protocol (Diagenode, Cat No C03010012) following manufacturers instructions. Enriched DNA from ChIP and Input DNA fragments were end-repaired, extended with an 'A' base on the 3end, ligated with indexed paired-end adaptors (NEXTflex, Bioo Scientific) using the Bravo Platform (Agilent), size-selected after 4 cycles of PCR with AMPure XP beads (Beckman Coulter) and amplified by PCR for 10 cycles more.

text: acute megakaryoblastic leukaemia

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: AMKL26 ETO2


E-MTAB-4367:AMKL7 ETO2

tag: attribute

text: INSERM U1170, Equipe Labellisee Ligue Contre le Cancer, Villejuif, France Institut Gustave Roussy, Villejuif, France Universite Paris Diderot, Paris, France

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4367:AMKL7 ETO2

characteristic: Submitter Id

text: ArrayExpress

text: Human patient's cells from xenograft

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: AMKL7 ETO2


E-MTAB-4367:AMKL7 H3K27Ac

text: public

text: E-MTAB-4367:AMKL7 H3K27Ac

text: ArrayExpress

text: Human patient's cells from xenograft

text: human

characteristic: description

text: acute megakaryoblastic leukaemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: AMKL7 H3K27Ac


E-MTAB-4367:HEL ETO2

text: public

text: E-MTAB-4367:HEL ETO2

text: ArrayExpress

text: human cell line

text: human

characteristic: common name

text: acute erythroleukemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: HEL ETO2


E-MTAB-4367:HEL H3K27Ac

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4367:HEL H3K27Ac

text: ArrayExpress

text: human cell line

text: human

text: acute erythroleukemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: HEL H3K27Ac


E-MTAB-4367:Input AMKL26

text: public

text: E-MTAB-4367:Input AMKL26

text: ArrayExpress

text: Human patient's cells from xenograft

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Input AMKL26

characteristic: title


E-MTAB-4367:Input AMKL7

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4367:Input AMKL7

text: ArrayExpress

text: Human patient's cells from xenograft

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Input AMKL7


E-MTAB-4367:Input HEL

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4367:Input HEL

text: ArrayExpress

text: human cell line

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Input HEL


E-MTAB-4367:Input MO7EKI

characteristic: External Id

text: public

text: E-MTAB-4367:Input MO7EKI

text: ArrayExpress

text: human cell line

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Input MO7EKI


E-MTAB-4367:MO7E H3K27me3

characteristic: INSDC center name

text: public

text: E-MTAB-4367:MO7E H3K27me3

text: ArrayExpress

text: human cell line

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MO7E H3K27me3


E-MTAB-4367:MO7E H3K4me3

characteristic: INSDC first public

text: public

text: E-MTAB-4367:MO7E H3K4me3

text: ArrayExpress

text: human cell line

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MO7E H3K4me3


E-MTAB-4367:MO7EKI ERG

characteristic: INSDC last update

text: public

text: E-MTAB-4367:MO7EKI ERG

text: ArrayExpress

text: human cell line

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MO7EKI ERG


E-MTAB-4367:MO7EKI ETO2

text: public

text: E-MTAB-4367:MO7EKI ETO2

text: ArrayExpress

characteristic: broker name

text: human cell line

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MO7EKI ETO2


E-MTAB-4367:MO7EKI GFP1

text: public

text: E-MTAB-4367:MO7EKI GFP1

text: ArrayExpress

text: human cell line

characteristic: cell type

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MO7EKI GFP1


E-MTAB-4367:MO7EKI GFP2

text: public

text: E-MTAB-4367:MO7EKI GFP2

text: ArrayExpress

text: human cell line

text: human

text: acute megakaryoblastic leukaemia

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MO7EKI GFP2


E-MTAB-4367:MO7EKI H3K27ac

text: public

characteristic: INSDC status

text: E-MTAB-4367:MO7EKI H3K27ac

text: ArrayExpress

text: human cell line

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MO7EKI H3K27ac


E-MTAB-4367:MO7EKI H3K4me1

text: public

characteristic: SRA accession

text: E-MTAB-4367:MO7EKI H3K4me1

text: ArrayExpress

text: human cell line

text: human

text: acute megakaryoblastic leukaemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: MO7EKI H3K4me1


text: public

tag: Namespace:INSTITUTE OF MICROBIOLOGY CHINESE ACADEMY OF SCIENCES

characteristic: Submitter Id

characteristic: collection date

text: soybean

text: Suppressive (S)

text: Soybean

characteristic: environment (biome)

text: Rhizosphere

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: N 45°37

characteristic: geographic location (latitude)

text: E 122°47

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Glycine max

text: 973 Program (2013CB127506)

characteristic: project name

text: Glycine max

text: Pyrosequencing

characteristic: sequencing method

text: Rhizosphere


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF MICROBIOLOGY CHINESE ACADEMY OF SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: soybean

characteristic: common name

text: Suppressive (S)

characteristic: description

text: Soybean

text: Rhizosphere

text: Soil

text: China

text: N 45°37

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

characteristic: organism

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Rhizosphere

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soybean

text: Conducive (C)

text: Soybean

characteristic: environment (biome)

text: Rhizosphere

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: N 45°37

characteristic: geographic location (latitude)

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Rhizosphere


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: soybean

text: Conducive mixed with suppressive (9:1)

text: Soybean

text: Rhizosphere

text: Soil

text: China

text: N 45°37

text: E 122°47

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Glycine max

text: 973 Program (2013CB127506)

characteristic: project name

text: Glycine max

text: Pyrosequencing

characteristic: sequencing method

text: Rhizosphere


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: soybean

characteristic: common name

text: Suppressive soils treated with 80 degeree centrigrades

characteristic: description

text: Soybean

text: Rhizosphere

text: Soil

text: China

text: N 45°37

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

characteristic: organism

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Rhizosphere

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: Submitter Id

characteristic: collection date

text: soybean

text: Suppressive soils treated with formalin

text: Soybean

characteristic: environment (biome)

text: Rhizosphere

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: N 45°37

characteristic: geographic location (latitude)

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Rhizosphere


1BC-S (C)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1BC-S (C)

text: soybean

text: Cyst isolated from suppressive

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Glycine max

text: 973 Program (2013CB127506)

characteristic: project name

text: Glycine max

text: Pyrosequencing

characteristic: sequencing method

text: Cyst


2BC-S (C)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2BC-S (C)

text: soybean

characteristic: common name

text: Cyst isolated from suppressive

characteristic: description

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

characteristic: organism

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst

characteristic: title


3BC-S (C)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 3BC-S (C)

characteristic: Submitter Id

characteristic: collection date

text: soybean

text: Cyst isolated from suppressive

text: Soybean

characteristic: environment (biome)

text: Cyst

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: N 45°37

characteristic: geographic location (latitude)

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst


1BC-C (C)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1BC-C (C)

text: soybean

text: Cyst isolated from conducive

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Glycine max

text: 973 Program (2013CB127506)

characteristic: project name

text: Glycine max

text: Pyrosequencing

characteristic: sequencing method

text: Cyst


2BC-C (C)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2BC-C (C)

text: soybean

characteristic: common name

text: Cyst isolated from conducive

characteristic: description

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

characteristic: organism

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst

characteristic: title


3BC-C (C)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 3BC-C (C)

characteristic: Submitter Id

characteristic: collection date

text: soybean

text: Cyst isolated from conducive

text: Soybean

characteristic: environment (biome)

text: Cyst

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: N 45°37

characteristic: geographic location (latitude)

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst


1BC-CS (C)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1BC-CS (C)

text: soybean

text: Cysts isolated from conducive mixed with suppressive (9:1)

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Glycine max

text: 973 Program (2013CB127506)

characteristic: project name

text: Glycine max

text: Pyrosequencing

characteristic: sequencing method

text: Cyst


2BC-CS (C)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2BC-CS (C)

text: soybean

characteristic: common name

characteristic: description

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

characteristic: organism

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst

characteristic: title


3BC-CS (C)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 3BC-CS (C)

characteristic: Submitter Id

characteristic: collection date

text: soybean

text: Soybean

characteristic: environment (biome)

text: Cyst

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: N 45°37

characteristic: geographic location (latitude)

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst


1BC-S80 (C)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1BC-S80 (C)

text: soybean

text: Cysts idolated from suppressive soils treated with 80 degeree centrigrades

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Glycine max

text: 973 Program (2013CB127506)

characteristic: project name

text: Glycine max

text: Pyrosequencing

characteristic: sequencing method

text: Cyst


2BC-S80 (C)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2BC-S80 (C)

text: soybean

characteristic: common name

characteristic: description

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

characteristic: organism

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst

characteristic: title


3BC-S80 (C)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 3BC-S80 (C)

characteristic: Submitter Id

characteristic: collection date

text: soybean

text: Soybean

characteristic: environment (biome)

text: Cyst

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: N 45°37

characteristic: geographic location (latitude)

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst


1BC-SF (C)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1BC-SF (C)

text: soybean

text: Cysts idolated from suppressive soils treated with formalin

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Glycine max

text: 973 Program (2013CB127506)

characteristic: project name

text: Glycine max

text: Pyrosequencing

characteristic: sequencing method

text: Cyst


2BC-SF (C)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2BC-SF (C)

text: soybean

characteristic: common name

characteristic: description

text: Soybean

text: Cyst

text: Soil

text: China

text: N 45°37

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

characteristic: organism

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst

characteristic: title


3BC-SF (C)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 3BC-SF (C)

characteristic: Submitter Id

characteristic: collection date

text: soybean

text: Soybean

characteristic: environment (biome)

text: Cyst

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: N 45°37

characteristic: geographic location (latitude)

text: E 122°47

text: host-associated

text: metagenome

text: Glycine max

text: 973 Program (2013CB127506)

text: Glycine max

text: Pyrosequencing

text: Cyst


F. mangiferae MRC7560

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: F. mangiferae MRC7560

tag: Namespace:Institute of Bioinformatics and Systems Biology

text: Mango

characteristic: host

text: Fusarium mangiferae

text: Fusarium mangiferae

characteristic: strain

text: Genome sequence of Fusarium mangiferae


F. proliferatum NRRL62905

text: Institute of Bioinformatics and Systems Biology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: F. proliferatum NRRL62905

text: Fusarium proliferatum

characteristic: organism

text: Fusarium proliferatum

text: Genome sequence of F. proliferatum NRRL62905


F. proliferatum ET1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: F. proliferatum ET1

characteristic: Submitter Id

text: Fusarium proliferatum is a member of the Asian clade of the Fusarium (Gibberella) fujikuroi species complex (FFSC). This species produces several mycotoxins like fumonision B1, moniliformin, beauvericin and bikaverin and can live as endophyte or pathogen on a broad range of plants, including economically important plants such as asparagus, fig, maize, onion, palm, pine, rice and wheat. The isolate F. proliferatum ET1 was isolated from orchid roots and is an example for endophytic life style.

characteristic: description

text: Fusarium proliferatum ET1

text: Fusarium proliferatum ET1

text: Genome sequence of F. proliferatum ET1

characteristic: title


text: gozbayram

text: public

text: Turkey

characteristic: geographic location (country and/or sea)

text: cow

characteristic: isolation source

text: uncultured bacterium

text: uncultured bacterium

text: cow rumen


characteristic: ENA-CHECKLIST

text: CNAG

text: public

characteristic: barcode

text: Spanish lynx

characteristic: common name

text: Candiles gDNA sample

text: Sierra de And�jar Natural Park, Sierra Morena, Spain

characteristic: geographic location (region and locality)

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA


characteristic: ENA-FIRST-PUBLIC

text: CNAG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Spanish lynx

text: Beta gDNA sample

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA


text: CNAG

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Spanish lynx

text: Gazpacho gDNA sample

text: Do�ana National Park, Andaluc�a, Spain

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA


text: CNAG

text: public

characteristic: SRA accession

text: Spanish lynx

text: Arcex gDNA sample

text: Lynx pardinus

characteristic: organism

text: Lynx pardinus

text: Lynx pardinus DNA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNAG

text: public

text: Spanish lynx

text: Daman2 gDNA sample

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA


text: CNAG

text: public

characteristic: Submitter Id

text: Spanish lynx

text: Almoradoux gDNA sample

characteristic: description

text: Do�ana National Park, Andaluc�a, Spain

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA


text: CNAG

text: public

text: Spanish lynx

text: Fran gDNA sample

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA

characteristic: title


text: CNAG

text: public

text: Spanish lynx

text: Pavon gDNA sample

text: Do�ana National Park, Andaluc�a, Spain

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA


text: CNAG

text: public

text: Spanish lynx

text: Borja gDNA sample

text: Do�ana National Park, Andaluc�a, Spain

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA


text: CNAG

text: public

text: Spanish lynx

text: Jub gDNA sample

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA


text: CNAG

text: public

text: Spanish lynx

text: Jeme gDNA sample

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus DNA


text: CNAG

text: public

text: Spanish lynx

text: Almoradoux RNA sample

text: Do�ana National Park, Andaluc�a, Spain

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus RNA


text: CNAG

text: public

text: Spanish lynx

text: Candiles RNA sample

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus RNA


text: CNAG

text: public

text: Eurasian lynx

text: Eurasion lynx gDNA sample from male lynx in captivity at the C�rdoba Zoo

text: Poland

text: Lynx lynx

text: Lynx lynx

text: Lynx lynx DNA


cow manure

text: gozbayram

text: public

text: cow manure

text: Turkey

characteristic: geographic location (country and/or sea)

text: cow

characteristic: isolation source

text: uncultured bacterium

text: uncultured bacterium

text: cow manure


characteristic: ENA-CHECKLIST

text: CIDE-CSIC

text: public

text: Control soil

text: soil metagenome

text: soil metagenome

text: Semiarid Mediterranean shrubland Central Spain


text: CIDE-CSIC

text: public

text: Rainfall Reduction (RR)

text: soil metagenome

text: soil metagenome


text: CIDE-CSIC

text: public

text: Warming (W)

text: soil metagenome

text: soil metagenome


text: CIDE-CSIC

text: public

text: Warming + Rainfall Reduction (WRR)

text: soil metagenome

text: soil metagenome


text: AAU, India

text: public

tag: Namespace:AAU, India

text: Bos indicus

text: Bos indicus

text: workshopmetagenome


HpaII

text: Luxembourg Institute of Health

text: public

text: HpaII

tag: Namespace:Luxembourg Institute of Health

text: house mouse

characteristic: common name

text: Mus musculus genomic DNA digested with methylation sensitive HpaII

text: Mus musculus

text: Mus musculus


text: Luxembourg Institute of Health

text: public

text: house mouse

text: Mus musculus genomic DNA digested with methylation sensitive HpyCH4IV

text: Mus musculus

text: Mus musculus


MspI

text: Luxembourg Institute of Health

text: public

text: MspI

text: house mouse

text: Mus musculus genomic DNA digested with methylation insensitive MspI

text: Mus musculus

text: Mus musculus


text: Salk Institute for Biological Studies

text: public

tag: Namespace:Salk Institute for Biological Studies

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: human

text: Protocols: samples collected in Trizol and RNA precipitated using phenol chloroform Library prepared using TruSeq Stranded mRNA Sample

text: Homo sapiens

text: Homo sapiens

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Salk Institute for Biological Studies

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: neuron

text: human

text: Homo sapiens

text: Homo sapiens

text: fibroblast

text: Homo sapiens


text: Salk Institute for Biological Studies

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: 5-HT neuron

text: human

text: Homo sapiens

text: Homo sapiens

text: fibroblast

text: Homo sapiens


E-MTAB-4398:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4398:Sample 1

tag: Namespace:Institute of Environmental Medicine Karolinska Institute

text: ArrayExpress

characteristic: cell line

text: neuronal stem cell

text: house mouse

text: Protocols: Under proliferating conditions the C17.2 cells were grown in cell culture dishes in DMEM high glucose, GlutaMAX (Gibco) supplemented with 5% horse serum, heat inactivated (Gibco) and 10% fetal bovine serum, heat inactivated (Gibco), 2 mM glutamine (Gibco), 100 U penicillin/mL, and 100 U streptomycin/mL (Gibco). The cells were split every 3-4 days. During this proliferating phase samples were harvested for RNAseq. For RNA extraction, the cells were washed after exposure and total RNA was extracted using the RNeasy Mini Columns (Qiagen) according to the manufacturers instructions, including the purification step with DNase I treatment. Stranded mRNA-seq (Illumina TruSeq RNA HT with polyA-selection

text: undifferentiated

characteristic: developmental stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: Sample 1


E-MTAB-4398:Sample 10

text: Institute of Environmental Medicine Karolinska Institute

text: public

text: E-MTAB-4398:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: Protocols: For differentiation experiments the cells were seeded at a density of 2000 cells/cm2 in suitable cell culture plates in DMEM complete cell medium. After 24 h the cell medium was replaced with differentiation medium consisting of DMEM:F12 medium (Gibco) supplemented with 2 mM glutamine (Gibco), 100 U penicillin/mL, 100 U streptomycin/mL (Gibco) and N2 supplement (1:100) (ThermoFischer Scientific). Half of this differentiation medium was changed every 3 days during differentiation. For RNA extraction, the cells were washed after exposure and total RNA was extracted using the RNeasy Mini Columns (Qiagen) according to the manufacturers instructions, including the purification step with DNase I treatment. Stranded mRNA-seq (Illumina TruSeq RNA HT with polyA-selection

characteristic: description

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 10

characteristic: title


E-MTAB-4398:Sample 11

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4398:Sample 11

text: ArrayExpress

characteristic: broker name

text: neuronal stem cell

text: house mouse

characteristic: common name

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 11


E-MTAB-4398:Sample 12

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4398:Sample 12

text: ArrayExpress

text: neuronal stem cell

characteristic: cell type

text: house mouse

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 12


E-MTAB-4398:Sample 13

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4398:Sample 13

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 13


E-MTAB-4398:Sample 14

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4398:Sample 14

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 14


E-MTAB-4398:Sample 15

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-4398:Sample 15

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 1 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 15


E-MTAB-4398:Sample 16

characteristic: External Id

text: public

text: E-MTAB-4398:Sample 16

text: ArrayExpress

characteristic: cell line

text: neuronal stem cell

text: house mouse

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 16


E-MTAB-4398:Sample 17

text: public

text: E-MTAB-4398:Sample 17

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 4 day differentiated

characteristic: developmental stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: Sample 17


E-MTAB-4398:Sample 18

text: public

text: E-MTAB-4398:Sample 18

characteristic: Submitter Id

text: ArrayExpress

text: neuronal stem cell

text: house mouse

characteristic: description

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 18


E-MTAB-4398:Sample 19

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4398:Sample 19

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 19

characteristic: title


E-MTAB-4398:Sample 2

text: public

text: E-MTAB-4398:Sample 2

text: ArrayExpress

characteristic: broker name

text: neuronal stem cell

text: house mouse

characteristic: common name

text: undifferentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 2


E-MTAB-4398:Sample 20

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4398:Sample 20

text: ArrayExpress

text: neuronal stem cell

characteristic: cell type

text: house mouse

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 20


E-MTAB-4398:Sample 21

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4398:Sample 21

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 21


E-MTAB-4398:Sample 22

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4398:Sample 22

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 22


E-MTAB-4398:Sample 23

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-4398:Sample 23

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 23


E-MTAB-4398:Sample 24

characteristic: External Id

text: public

text: E-MTAB-4398:Sample 24

text: ArrayExpress

characteristic: cell line

text: neuronal stem cell

text: house mouse

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 24


E-MTAB-4398:Sample 25

text: public

text: E-MTAB-4398:Sample 25

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 4 day differentiated

characteristic: developmental stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: Sample 25


E-MTAB-4398:Sample 26

text: public

text: E-MTAB-4398:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: neuronal stem cell

text: house mouse

characteristic: description

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 26


E-MTAB-4398:Sample 27

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4398:Sample 27

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 4 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 27

characteristic: title


E-MTAB-4398:Sample 28

text: public

text: E-MTAB-4398:Sample 28

text: ArrayExpress

characteristic: broker name

text: neuronal stem cell

text: house mouse

characteristic: common name

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 28


E-MTAB-4398:Sample 29

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4398:Sample 29

text: ArrayExpress

text: neuronal stem cell

characteristic: cell type

text: house mouse

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 29


E-MTAB-4398:Sample 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4398:Sample 3

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: undifferentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 3


E-MTAB-4398:Sample 30

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4398:Sample 30

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 30


E-MTAB-4398:Sample 31

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-4398:Sample 31

text: ArrayExpress

text: neuronal stem cell

text: house mouse

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 31


E-MTAB-4398:Sample 32

characteristic: External Id

text: public

text: E-MTAB-4398:Sample 32

text: ArrayExpress

characteristic: cell line

text: neuronal stem cell

text: house mouse

text: 7 day differentiated

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Sample 32