Bovine Tumor B70

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor B70

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Bovine Tumor B76SUS

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GIGA-R, University of Liege

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bovine Tumor B76SUS

tag: Namespace:GIGA-R, University of Liege

characteristic: Submitter Id

text: RNA seq reads from tumors induced by BLV in cattle mapped to BLV genome

characteristic: description

text: Bovine leukemia virus

characteristic: organism

text: Bovine leukemia virus

text: BLV induced Bovine Tumor

characteristic: title


Bovine Tumor LB120

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor LB120

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Bovine Tumor T1345

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor T1345

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Bovine Tumor T15

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor T15

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Bovine Tumor B1351

text: GIGA-R, University of Liege

text: public

text: Bovine Tumor B1351

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV induced Bovine Tumor


Ovine #206

text: GIGA-R, University of Liege

text: public

text: Ovine #206

text: RNA seq reads from PBMCs of BLV infected sheep mapped to BLV genome

text: Bovine leukemia virus

text: Bovine leukemia virus

text: Asymptomatic BLV infected sheep


Ovine #220

text: GIGA-R, University of Liege

text: public

text: Ovine #220

text: Bovine leukemia virus

text: Bovine leukemia virus

text: Asymptomatic BLV infected sheep


Ovine #221

text: GIGA-R, University of Liege

text: public

text: Ovine #221

text: Bovine leukemia virus

text: Bovine leukemia virus

text: Asymptomatic BLV infected sheep


Ovine #222

text: GIGA-R, University of Liege

text: public

text: Ovine #222

text: Bovine leukemia virus

text: Bovine leukemia virus

text: Asymptomatic BLV infected sheep


Ovine #232

text: GIGA-R, University of Liege

text: public

text: Ovine #232

text: Bovine leukemia virus

text: Bovine leukemia virus

text: Asymptomatic BLV infected sheep


Ovine #235

text: GIGA-R, University of Liege

text: public

text: Ovine #235

text: Bovine leukemia virus

text: Bovine leukemia virus

text: Asymptomatic BLV infected sheep


text: GIGA-R, University of Liege

text: public

text: RNA seq reads from PBMCs of a uninfected animal mapped to BLV genome

text: Bovine leukemia virus

text: Bovine leukemia virus

text: Bovine negative control


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

tag: Namespace:HARVARD SCHOOL OF PUBLIC HEALTH

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP

type: AMR curated data - CABBAGE

value: cefotaxime

value: Streptococcus pneumoniae

value: tetracycline

value: chloramphenicol

value: erythromycin

value: penicillin


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: Wildtype

characteristic: ArrayExpress-Genotype

text: Spleen

characteristic: ArrayExpress-OrganismPart

text: Wildtype

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-TimePoint

characteristic: ArrayExpress-Treatment

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: DNA from cells

characteristic: sample description

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HARVARD SCHOOL OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: USA

characteristic: SRA accession

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

characteristic: Submitter Id

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: NVT PNSP

characteristic: title


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: cerebrospinal fluid

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: HARVARD SCHOOL OF PUBLIC HEALTH

text: public

text: USA

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NVT PNSP


text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Embryo

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GIGA-R, University of Liege

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ovine BLV cell lines

characteristic: description

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV Cell Line


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col0 grown under UV0 conditions


text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: public

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Col0 grown under UV0 conditions

characteristic: title


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col0 grown under UV1 conditions


text: WT

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: sample description

text: Mus musculus


text: Cryptococcus neoformans var. grubii

text: SC

text: public

text: Cryptococcus neoformans var. grubii

characteristic: common name

text: Cryptococcus neoformans var. grubii

text: Cryptococcus neoformans var. grubii


text: Homo sapiens

characteristic: ENA-CHECKLIST

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: unidentified

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: unidentified

text: unidentified

text: unidentified


text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Hypothalamus

characteristic: ArrayExpress-OrganismPart

text: Wildtype

text: House mouse

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: House mouse

text: Mus musculus

text: Hypothamus from mouse

text: Mus musculus

characteristic: strain


text: Adult

text: Hypothalamus

text: Mutant

text: House mouse

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: House mouse

text: Mus musculus

text: Hypothamus from mouse

text: Mus musculus


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Col0 grown under UV0 condition


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col0 grown under UV2 conditions

characteristic: title


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col0 grown under UV3 conditions


BLV_3RACE 206

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE 206

text: 3'RACE PBMC from asymptomatic BLV infected sheep

characteristic: description

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE asymptomatic sheep


BLV_3RACE 220

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE 220

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE asymptomatic sheep


BLV_3RACE 221

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE 221

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE asymptomatic sheep


BLV_3RACE 222

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE 222

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE asymptomatic sheep


BLV_3RACE 232

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE 232

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE asymptomatic sheep


BLV_3RACE 235

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE 235

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE asymptomatic sheep


BLV_3RACE B167

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE B167

text: 3'RACE BLV bovine tumor

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE BLV bovine tumor


BLV_3RACE B70

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE B70

text: 3'RACE BLV bovine tumor

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE BLV bovine tumor


BLV_3RACE FLK

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE FLK

text: 3'RACE on BLV FLK cell line

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE on BLV FLK cell line


BLV_3RACE H2O

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE H2O

text: 3'RACE negative control

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE H2O


BLV_3RACE L267

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE L267

text: 3'RACE on BLV L267 cell line

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE on BLV L267 cell line


BLV_3RACE M206

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE M206

text: 3'RACE BLV ovine tumor

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE BLV ovine tumor


BLV_3RACE M224

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE M224

text: 3'RACE BLV ovine tumor

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE BLV ovine tumor


BLV_3RACE M2241

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE M2241

text: 3'RACE BLV ovine tumor

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE BLV ovine tumor


BLV_3RACE T1345

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE T1345

text: 3'RACE BLV bovine tumor

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE BLV bovine tumor


BLV_3RACE T15

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE T15

text: 3'RACE BLV bovine tumor

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE BLV bovine tumor


BLV_3RACE YR2

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE YR2

text: 3'RACE on BLV YR2 cell line

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE on BLV YR2 cell line


BLV_3RACE YR2-DNA

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE YR2-DNA

text: 3'RACE on YR2-DNA negative control

text: Bovine leukemia virus

text: Bovine leukemia virus

text: 3'RACE on YR2-DNA negative control


BLV_3RACE Long Reads

text: GIGA-R, University of Liege

text: public

text: BLV_3RACE Long Reads

text: BLV_3RACE Long Reads sequenced with MinION

text: Bovine leukemia virus

text: Bovine leukemia virus

text: BLV_3RACE Long Reads


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col0 under UV3 conditions


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Crosses


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: crosses


text: WDRC KAUST

text: public

tag: Namespace:WDRC KAUST

characteristic: collection date

text: Buffer

characteristic: environment (biome)

text: Dark

characteristic: environment (feature)

text: Planktonic cells

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Escherichia coli

text: Solar inactivation

characteristic: project name

text: Escherichia coli

text: Illumina HiSeq

characteristic: sequencing method

type: has member


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Buffer

text: Light

text: Planktonic cells

text: Saudi Arabia

text: metatranscriptome

text: Escherichia coli

characteristic: organism

text: Solar inactivation

text: Escherichia coli

text: Illumina HiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: False

text: UBERON:oral cavity

characteristic: body habitat

text: UBERON:saliva

characteristic: body product

text: UBERON:mouth

characteristic: body site

text: NCI

text: 5/7/15 0:00

text: human oral metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: day

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: env biome

characteristic: env feature

text: ENVO:saliva

characteristic: env matter

text: True

characteristic: extracted DNA avail now

text: Scope Mouthwash

characteristic: extraction method

text: True

text: True

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human oral metagenome

text: True

text: True

characteristic: public

text: completed

text: saliva

characteristic: sample type

text: human oral metagenome

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: False

text: UBERON:oral cavity

characteristic: body habitat

text: UBERON:saliva

characteristic: body product

text: UBERON:mouth

characteristic: body site

text: NCI

text: 5/7/15 0:00

text: human oral metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: day

text: True

text: ENVO:saliva

text: True

text: OMNIGene Tube

text: True

text: True

text: human

text: human oral metagenome

characteristic: organism

text: True

text: True

text: completed

text: saliva

text: human oral metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: False

text: UBERON:oral cavity

text: UBERON:saliva

text: UBERON:mouth

text: NCI

text: 5/7/15 0:00

text: human oral metagenome

text: GAZ:United States of America

characteristic: depth

characteristic: description

text: True

characteristic: elevation

characteristic: env biome

characteristic: env feature

text: ENVO:saliva

characteristic: env matter

text: True

characteristic: extracted DNA avail now

text: Scope Mouthwash

characteristic: extraction method

text: True

text: True

text: human

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human oral metagenome

text: True

text: True

characteristic: public

text: completed

text: saliva

characteristic: sample type

text: human oral metagenome

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: False

text: UBERON:oral cavity

characteristic: body habitat

text: UBERON:saliva

characteristic: body product

text: UBERON:mouth

characteristic: body site

text: NCI

text: 5/7/15 0:00

text: human oral metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: day

text: True

text: ENVO:saliva

text: True

text: OMNIGene Tube

text: True

text: True

text: human

text: human oral metagenome

characteristic: organism

text: True

text: True

text: completed

text: saliva

text: human oral metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI PUTRA MALAYSIA

text: public

tag: Namespace:UNIVERSITI PUTRA MALAYSIA

text: Control: Untreated Gracilaria changii_October2012

characteristic: description

text: Gracilaria changii

text: Gracilaria changii


text: UNIVERSITI PUTRA MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Control: Untreated Gracilaria changii_March2013

text: Gracilaria changii

text: Gracilaria changii

text: Untreated Gracilaria changii_March2013


text: UNIVERSITI PUTRA MALAYSIA

text: public

characteristic: Submitter Id

text: S deprivated Gracilaria salicornia_March 2013

text: Gracilaria salicornia

text: Gracilaria salicornia

text: S deprivated Gracilaria salicornia_March2013


text: UNIVERSITI PUTRA MALAYSIA

text: public

text: Control: Untreated Gracilaria salicornia_March2013

text: Gracilaria salicornia

text: Gracilaria salicornia


text: UNIVERSITI PUTRA MALAYSIA

text: public

text: S deprivated Gracilaria changii_October2012

text: Gracilaria changii

text: Gracilaria changii


text: UNIVERSITI PUTRA MALAYSIA

text: public

text: S deprivated Gracilaria changii March 2013

text: Gracilaria changii

text: Gracilaria changii


text: UNIVERSITI PUTRA MALAYSIA

text: public

text: Control: Untreated Gracilaria salicornia_October2012

text: Gracilaria salicornia

text: Gracilaria salicornia


text: UNIVERSITI PUTRA MALAYSIA

text: public

text: S deprviated Gracilaria salicornia_October2012

text: Gracilaria salicornia

text: Gracilaria salicornia


text: Forensic and Scientific Services

text: public

tag: Namespace:Forensic and Scientific Services

text: Serogroup C

text: Australia

characteristic: geographic location (country and/or sea)

text: Neisseria meningitidis

text: Neisseria meningitidis

text: N. meningitidis cluster analysis


text: Forensic and Scientific Services

text: public

text: Serogroup Y

text: Australia

text: Neisseria meningitidis

text: Neisseria meningitidis

text: N. meningitidis cluster analysis


text: ARO

text: public

text: chicken

characteristic: common name

text: Assembled transcripts for novel chicken genes missing in the Galgal4. Three individual birds of each chicken strain were used for preparation of RNA-seq libraries.

text: Adult (4 months)

characteristic: dev stage

text: Gallus gallus

text: Gallus gallus

text: females

characteristic: sex

text: Cobb & Lohman

characteristic: strain

text: mixed (visceral fat, hypothalamus and pituitary)

characteristic: tissue type

text: Novel chicken genes (194 contigs)


ggTNF

characteristic: ENA-CHECKLIST

text: ARO

text: public

text: ggTNF

text: chicken

text: Assembly of chicken TNF reads mostly obtained from PRJNA284655

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: Embryonic spleen

text: Chicken TNF mRNA

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: ArrayExpress

characteristic: broker name

text: fruit fly

text: Protocols: The 82 genotyped lines were selected from the 205 in the DGRP collection based on three criteria: 1) including lines with the highest quality and depth of genome sequencing, 2) avoiding pairs of highly-related lines and (3) avoiding lines with unusual levels of residual heterozygosity. Freshly enclosed adults were placed in embryo collection vials, with standard apple cap plates. After three/four 1 hr pre-lays, the flies were allowed to lay for 2 hrs, after which the embryos were aged to the appropriate time-point. The embryos were then dochorionated using 50% bleach, snap frozen in liquid Nitrogen and store at -80C. ~100 embryos were homogenized with Cordless Motor for Pellet Mix and pestels (VWR) in ice. RNA was extracted in TRIzol[tm]LS (Life Technologies), digested with RNAse free DNAse I (Roche) and purified with the RNeasy mini kit (QIAGEN) according to the manufacturers' recommendations. The 3' TagSeq was performed with the following modifications: 3ug of total RNA were fragmented by incubation at 94C for 5 min in RNA fragmentation buffer (200 mM Tris acetate pH 8.2, 500 mM potassium acetate and 150 mM magnesium acetate). The reaction was stopped with 0.045M ethylenediaminetetraacetic acid (EDTA) pH 8 (final concentration). The fragmented RNA was precipitated in ethanol and resuspended in 8ul nuclease free H2O. For retrotranscription, the 8ul of fragmented RNA were mixed with 1ul of biotinylated oligo P7_dT16VN (50 mM) (BioSpring) and 1 ul of 10 mM dNTPs. The samples were incubated at 65C for 5 min and transferred to ice for 1 min. Four microliters of 5X first-strand buffer (Life Technologies), 2 ul DTT 0.1 M (Life Technologies), 0.1 ul actinomycin D (1.25 mg/ml), 1ul RNaseOUT Recombinant Ribonuclease Inhibitor (Life Technologies), 2ul nuclease free H2O and 1 ul Superscript III were added to each sample, and incubated at 50C for 50 min. The samples were immediately purified using 1X of Ampure XP beads and eluted in 40 ul elution buffer (EB)(10 mM Tris-HCl, pH 8). Second-strand cDNA synthesis was performed according to the manufactures suggestions (Fermentas) and incubated at 15C for 3h. Fragments from 200-500 bps were size selected with Ampure XP beads. Binding to streptavidin beads (Dynabeads M-280 Streptavidin, Life Technologies) was performed according to the manufactures protocol . End repair, (A) tailing and ligation of Illumina sequence adaptor P5- P7_T1_Mpx (1ul of 1.25uM) were performed with the NEBNext DNA Library Prep Reagent Set for Illumina (NEB) according to the manufacturers recommendations. Beads were washed every step according to the protocol: twice with 200ul 1X B&W buffer (5 mM Tris-HCl, pH 7.5, 0.5 mM EDTA and 1M NaCl), once with 200 ul EB. Samples were resuspended in 30ul EB. Enrichment polymerase chain reaction (PCR) was performed using 15 ul of beads, 10ul 5X Phusion HF Buffer (Thermo Scientific), 1 ul 10 mM dNTPs, 1 ul each of oligos PE1.0 and PE2.0 (10mM; Illumina), 1 ul Phusion DNA Polymerase (Thermo Scientific) and 22 ul H2O. The PCR program was 30s at 96C, 16 cycles of (10s at 96C, 10s at 60C and 30s at 72C) and 5 min at 72C. Fragments from 200-500 bps (average size 250-270 bps) were size selected with Ampure XP beads and eluted in 17 ul of EB. Library quality was assessed on a 2100 Bioanalyzer system (Agilent).

text: embryonic stage 5 to 8

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: egg laying

characteristic: initial time point

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: mixed sex

text: 2 to 4

unit: hour

characteristic: time


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: fruit fly

characteristic: description

text: embryonic stage 13 to 14

text: wild type genotype

text: egg laying

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: mixed sex

text: 10 to 12


characteristic: ENA-CHECKLIST

text: EMBL

text: public

text: ArrayExpress

text: fruit fly

characteristic: common name

text: embryonic stage 10 to 11

text: wild type genotype

text: egg laying

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Drosophila melanogaster

text: mixed sex

characteristic: sex

characteristic: strain

text: 6 to 8


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: crosses

characteristic: title


text: URMITE

text: public

text: Ruminococcus sp. AT12

text: Ruminococcus sp. AT12

text: Bariatricus massiliensis genome


text: URMITE

text: public

text: Isolated from human stool from Senegal

text: Christensenella sp. Marseille-P2438

text: Christensenella sp. Marseille-P2438

text: Human stool microbiota


text: public

tag: Namespace:ZOOLOGY DEPARTMENT, UNIVERSITY OF OXFORD

characteristic: isolate

text: Herpes simplex virus (type 1 / strain 17)


text: ZOOLOGY DEPARTMENT, UNIVERSITY OF OXFORD

characteristic: INSDC center name

text: public


E-MTAB-4681:colorectal cancer 1

characteristic: INSDC first public

text: public

text: E-MTAB-4681:colorectal cancer 1

tag: Namespace:Science for Life Laboratory Royal Institute of Technology

characteristic: age

text: ArrayExpress

characteristic: broker name

text: poorly differentiated, T3, N0, M0

characteristic: clinical history

text: human

text: Protocols: The use of human tissue samples was approved by the Uppsala Ethical Review Board (Reference #2011/473). Tissues samples, collected within the infrastructure of an established biobank, were embedded in Optimal Cutting Temperature (O.C.T.) compound and stored at -80C. A hematoxylin-eosin (HE) stained frozen section (4um) was prepared from each sample using a cryostat and the CryoJane Tape-Transfer System (Instrumedics, St. Louis, MO, USA). Each slide was examined by a pathologist to ensure proper tissue morphology. Three sections (10um) were cut from each frozen tissue block and collected into a tube for subsequent RNA extraction. The tissue was homogenized mechanically using a 3 mm steel grinding ball (VWR). Total RNA was extracted from cell lines and tissue samples using the RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturers instructions. The extracted RNA samples were analyzed using either an Experion automated electrophoresis system (Bio-Rad Laboratories, Hercules, CA, USA) with the standard-sensitivity RNA chip or an Agilent 2100 Bioanalyzer system(Agilent Biotechnologies, Palo Alto, USA) with the RNA 6000 Nano Labchip Kit. Only samples of high-quality RNA (RNA Integrity Number 7.5) were used in the following mRNA sample preparation for sequencing. Libraries were constructed using the Truseq v 2 kit, with poly-A-enrichmen

text: adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens

text: female

text: colorectal cancer 1


E-MTAB-4681:colorectal cancer 10

characteristic: ENA-CHECKLIST

text: Science for Life Laboratory Royal Institute of Technology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4681:colorectal cancer 10

characteristic: Submitter Id

text: ArrayExpress

text: poorly differentiated, T3, N2, M1

text: human

characteristic: description

text: adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: male

text: colorectal cancer 10


E-MTAB-4681:colorectal cancer 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4681:colorectal cancer 2

text: ArrayExpress

text: poorly differentiated, T4, N2, M1

text: human

characteristic: common name

text: adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

text: female

characteristic: sex

text: colorectal cancer 2


E-MTAB-4681:colorectal cancer 3

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4681:colorectal cancer 3

text: ArrayExpress

text: moderately differentiated, T4, N2, M1

text: human

text: adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: female

text: colorectal cancer 3

characteristic: title


E-MTAB-4681:colorectal cancer 4

text: public

text: E-MTAB-4681:colorectal cancer 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: moderately differentiated, T3, N1

characteristic: clinical history

text: human

text: adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: male

text: colorectal cancer 4


E-MTAB-4681:colorectal cancer 5

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4681:colorectal cancer 5

text: ArrayExpress

text: moderately differentiated, T3b, N0

text: human

text: adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens

text: male

text: colorectal cancer 5


E-MTAB-4681:colorectal cancer 6

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-4681:colorectal cancer 6

characteristic: Submitter Id

text: ArrayExpress

text: moderately differentiated, T3, N2

text: human

characteristic: description

text: adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: male

text: colorectal cancer 6


E-MTAB-4681:colorectal cancer 7

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4681:colorectal cancer 7

text: ArrayExpress

text: moderately differentiated, T3, N1

text: human

characteristic: common name

text: adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

text: male

characteristic: sex

text: colorectal cancer 7


E-MTAB-4681:colorectal cancer 8

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4681:colorectal cancer 8

text: ArrayExpress

text: mucinous, peritoneal carcinosis

text: human

text: adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: female

text: colorectal cancer 8

characteristic: title


E-MTAB-4681:colorectal cancer 9

text: public

text: E-MTAB-4681:colorectal cancer 9

characteristic: age

text: ArrayExpress

characteristic: broker name

text: moderately differentiated, T3, N0

characteristic: clinical history

text: human

text: adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: male

text: colorectal cancer 9


E-MTAB-4681:glioma 1

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4681:glioma 1

text: ArrayExpress

text: astrocytic and oligodendroglial phenotype

text: human

text: glioma

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: male

text: glioma 1


E-MTAB-4681:glioma 2

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-4681:glioma 2

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: glioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male

text: glioma 2


E-MTAB-4681:glioma 3

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-4681:glioma 3

text: ArrayExpress

text: primary astrocytic

text: human

characteristic: common name

text: glioma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: male

characteristic: sex

text: glioma 3


E-MTAB-4681:liver cancer 1

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4681:liver cancer 1

text: ArrayExpress

text: clear cell type

text: human

text: hepatocellular carcinoma

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

text: liver cancer 1

characteristic: title


E-MTAB-4681:liver cancer 2

text: public

text: E-MTAB-4681:liver cancer 2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: high-moderately differentiated

characteristic: clinical history

text: human

text: hepatocellular carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

text: liver cancer 2


E-MTAB-4681:liver cancer 3

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4681:liver cancer 3

text: ArrayExpress

text: moderately differentiated

text: human

text: hepatocellular carcinoma

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

text: liver cancer 3


E-MTAB-4681:NTERA-2 1

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-4681:NTERA-2 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

characteristic: description

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: testis

text: Homo sapiens

text: male

text: NTERA-2 1


E-MTAB-4681:NTERA-2 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4681:NTERA-2 2

text: ArrayExpress

text: human

characteristic: common name

text: embryonal carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: testis

text: Homo sapiens

text: male

characteristic: sex

text: NTERA-2 2


E-MTAB-4681:testis cancer 1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4681:testis cancer 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mixed tumor, seminoma, embryonal cancer and yolk sac components

text: human

text: seminoma

text: Homo sapiens

text: Homo sapiens

text: testis

text: Homo sapiens

text: male

text: testis cancer 1

characteristic: title


E-MTAB-4681:testis cancer 2

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4681:testis cancer 2

text: ArrayExpress

text: seminoma, classical

characteristic: clinical history

text: human

text: seminoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: testis

text: Homo sapiens

text: male

text: testis cancer 2


E-MTAB-4681:testis cancer 3

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-4681:testis cancer 3

characteristic: Submitter Id

text: ArrayExpress

text: seminoma, classical

text: human

text: seminoma

text: Homo sapiens

text: Homo sapiens

text: testis

characteristic: organism part

text: Homo sapiens

text: male

text: testis cancer 3


E-MTAB-4681:testis cancer 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4681:testis cancer 4

text: ArrayExpress

text: seminoma, classical

text: human

characteristic: common name

characteristic: description

text: seminoma

text: Homo sapiens

text: Homo sapiens

text: testis

text: Homo sapiens

text: male

text: testis cancer 4


E-MTAB-4681:U-138 MG 1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4681:U-138 MG 1

text: ArrayExpress

text: U-138 MG

characteristic: cell line

text: human

text: glioma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: male

characteristic: sex

text: U-138 MG 1


E-MTAB-4681:U-138 MG 2

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

text: E-MTAB-4681:U-138 MG 2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: U-138 MG

text: human

text: glioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male

text: U-138 MG 2

characteristic: title


E-MTAB-4681:U-87 MG 1

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4681:U-87 MG 1

text: ArrayExpress

text: U-87 MG

text: human

text: glioma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male

text: U-87 MG 1


E-MTAB-4681:U-87 MG 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4681:U-87 MG 2

characteristic: Submitter Id

text: ArrayExpress

text: U-87 MG

text: human

text: glioma

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: male

text: U-87 MG 2


text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Christensenella sp. Marseille-P2437

text: Christensenella sp. Marseille-P2437

characteristic: strain

text: Christensenella timonensis genome


text: public

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: crosses


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: tt4 mutant grown under UV0


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: tt4 background grown under UV1 or UV2


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: tt4 background grown under UV3


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvh1 background grown under UV0


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvh1 background grown under UV3


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvr23 background grown under UV0


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvr23 background grown under UV1


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvr23 background grown under UV2


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvr23 background grown under UV3


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvr2 background grown under UV0


text: URMITE

text: public

text: Culturomics study of the human gut

characteristic: description

text: Eubacterium sp. SN18

text: Eubacterium sp. SN18

text: Emergencia timonense genome


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvr2 background grown under UV3

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvr3 background grown under UV0


text: public

characteristic: INSDC status

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvr3 background grown under UV3


text: URMITE

text: public

characteristic: SRA accession

text: Gracilibacillus sp. Marseille-P2481

text: Gracilibacillus sp. Marseille-P2481

text: Gracilibacillus timonensis genome


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: uvr8 background grown under UV3


E-MTAB-4729:A549 BR1

text: Glaxo Smithkline

text: public

text: E-MTAB-4729:A549 BR1

tag: Namespace:Glaxo Smithkline

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Protocols: F12K + 10% FBS Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: non-small cell lung carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: A549 BR1


E-MTAB-4729:A549 BR2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Glaxo Smithkline

text: public

text: E-MTAB-4729:A549 BR2

characteristic: Submitter Id

text: ArrayExpress

text: human

text: non-small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: A549 BR2


E-MTAB-4729:BEAS-2B BR1

text: Glaxo Smithkline

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4729:BEAS-2B BR1

text: ArrayExpress

text: human

text: Protocols: Lonza BEBM with additive kit (Cat# CC-3170, GA-1000 additive omitted). Plates coated with 0.01 mg/ml fibronectin, 0.03 mg/ml bovine collagen type I and 0.01 mg/mL BSA dissolved in BEBM Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: BEAS-2B BR1


E-MTAB-4729:BEAS-2B BR2

text: Glaxo Smithkline

text: public

text: E-MTAB-4729:BEAS-2B BR2

text: ArrayExpress

text: human

characteristic: common name

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: BEAS-2B BR2


text: public

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: uvr8 background grown under UV0


characteristic: ENA-CHECKLIST

text: URMITE

text: public

text: Culturomics study

text: Clostridiales bacterium Marseille-P2411

text: Clostridiales bacterium Marseille-P2411

characteristic: strain

text: Study of obese stool microbiota


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

text: Homo sapiens


Karelia.shotgun

characteristic: ENA-FIRST-PUBLIC

text: MPI-EVA

text: public

text: Karelia.shotgun

text: human

text: Homo sapiens

text: Homo sapiens

text: Karelia.shotgun

characteristic: title


text: CNAG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Olea europaea subsp. europaea

text: Olea europaea subsp. europaea

text: RNA sample from olive root material (v. Farga)


text: CNAG

text: public

text: Olea europaea subsp. europaea

text: Olea europaea subsp. europaea

text: RNA sample from immature olives (v. Farga)


text: public

tag: Namespace:KU Leuven Department of Microbial and Molecular Systems (M2S)

text: ArrayExpress

characteristic: broker name

text: Protocols: Overnight cultures of P. aeruginosa were diluted 1/100 in 1/20 TSB and were grown for 3 h until late-exponential phase. Cells were treated for 5 min with 1% DMSO (solvent control) The RNA content of 20 mL bacterial culture was stabilized by adding 1:5 volume of ice-cold phenol:ethanol (5:95). Cells were flash frozen in liquid nitrogen and stored at -80 °C. For RNA isolation, cell pellets were resuspended in TRIzol and cells were lysed by mechanical disruption using a Precellys 24 (Bertin Technologies) at 6500 rpm for 45 seconds with 0.25 ml of 0.1 mm glass beads. Next, organic and aqueous phases were separated by Phase Lock Gel tubes (heavy type) and total RNA was isolated using the Pure Link RNA mini Kit (Ambion). RNA samples were DNase treated using Turbo DNAse-free kit (Ambion) according to the manufacturer’s protocol. To increase yields, RNA was precipitated in 3 volumes of isopropanol and 1/10 volume of sodium acetate (3 M, pH 5.2), washed twice in ethanol and resuspended in nuclease-free ultrapure water. RNA integrity was analyzed using Experion RNA StdSens Chips (Bio-Rad). RNA quantity and purity was assessed using a NanoDrop ND-1000 spectrophotometer. RNA was subjected to ribosomal RNA depletion using the Ribo-Zero Magnetic Kit for gram negative bacteria (Epicentre). Libraries for RNA Seq were constructed from the rRNA-depleted samples using standard Illumina protocols.

characteristic: description

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: DMSO


characteristic: ENA-LAST-UPDATE

text: KU Leuven Department of Microbial and Molecular Systems (M2S)

text: public

text: ArrayExpress

text: Protocols: Overnight cultures of P. aeruginosa were diluted 1/100 in 1/20 TSB and were grown for 3 h until late-exponential phase. Cells were treated for 5 min with 0.2x MIC of SPI031 The RNA content of 20 mL bacterial culture was stabilized by adding 1:5 volume of ice-cold phenol:ethanol (5:95). Cells were flash frozen in liquid nitrogen and stored at -80 °C. For RNA isolation, cell pellets were resuspended in TRIzol and cells were lysed by mechanical disruption using a Precellys 24 (Bertin Technologies) at 6500 rpm for 45 seconds with 0.25 ml of 0.1 mm glass beads. Next, organic and aqueous phases were separated by Phase Lock Gel tubes (heavy type) and total RNA was isolated using the Pure Link RNA mini Kit (Ambion). RNA samples were DNase treated using Turbo DNAse-free kit (Ambion) according to the manufacturer’s protocol. To increase yields, RNA was precipitated in 3 volumes of isopropanol and 1/10 volume of sodium acetate (3 M, pH 5.2), washed twice in ethanol and resuspended in nuclease-free ultrapure water. RNA integrity was analyzed using Experion RNA StdSens Chips (Bio-Rad). RNA quantity and purity was assessed using a NanoDrop ND-1000 spectrophotometer. RNA was subjected to ribosomal RNA depletion using the Ribo-Zero Magnetic Kit for gram negative bacteria (Epicentre). Libraries for RNA Seq were constructed from the rRNA-depleted samples using standard Illumina protocols.

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14

text: Pseudomonas aeruginosa UCBPP-PA14


E-MTAB-4683:Sample 1

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 1

tag: Namespace:Institute of Microbiology ETH Zurich

text: ArrayExpress

text: thale cress

text: Protocols: Arabidopsis thaliana Col-0 were grown in a gnotobiotic microbox system as described in Innerebner et al. 2011. Briefly, microboxes containing 70 ml MS medium including vitamins (Duchefa) supplemented with 3% sucrose and 0.55% plant agar (Duchefa) were prepared. The medium was covered with a sterile gas-permeable foil (lumox film 25, Sarstedt) containing 8 holes (4 mm diameter) and boxes were UV-irradiated for 20 min. Seeds were surface sterilized and placed on the agar surface at the positions of the 8 holes. Seeds were inoculated with as described in Innerebner et al. 2011. Plants were grown in a growth chamber set to 22°C with 16 h light/8 h dark cycle for the first week followed by 9h light/15 h dark cycle. One day before infection with Pseudomonas syringae pv. tomato DC3000 luxCDABE (Fan et al. 2008, The Plant Journal 53:393-399), 30 holes were pierced into the microbox walls with a canula (BIBRAUN, 18G x 1.5\, ø 1.2 x 40 mm) to reduce relative humidity to roughly 80%. One loop of a two-day Pst lux culture on King's B (KB) plate was suspended in 1 ml 10 mM MgCl2. 150 μl were plated onto a KB plate and incubated overnight at 28°C to grow the infection inoculum. For preparation of the infection suspension, 10 ml 10 mM MgCl2 were spread on the plate and after 10 minutes the suspension was transferred to a 50 ml falcon tube. The concentration was adjusted turbidimetrically to an OD600 of 0.1 and further diluted 1:100 to an OD600 of 0.001 which corresponded to approximately 5x105 cfu ml-1. Three-week old plants were kept in darkness before infection. Plants were infected by spraying approximately 100 μl of Pst lux suspension over each microbox (four times spraying in total) under sterile conditions. As a control, uninfected plants were sprayed with 10 mM MgCl2. Four independent experiments were conducted to collect plant material for transcriptome analysis, with each corresponding to one biological replicate. Leaves for RNA extraction were collected at midday. For each treatment, single leaves were removed from 18 plants (out of three microboxes), directly frozen in liquid nitrogen and then stored at 80°C until RNA extraction. Total RNA was extracted from 18 pooled leaves using the RNeasy mini Plant kit (Qiagen) including the on-column DNaseI digest according to the manufacturer's recommendations. The quality of the isolated RNA was determined with a Qubit® (1.0) Fluorometer (Life Technologies) and a Bioanalyzer 2100 (Agilent). Libraries were prepared using the TruSeq RNA Sample Prep Kit v2 (Illumina). Briefly, total RNA samples were polyA-enriched and then reverse-transcribed into double-stranded cDNA. The cDNA samples were fragmented, end-repaired and polyadenylated before ligation of TruSeq adapters containing the index for multiplexing. Fragments containing TruSeq adapters on both ends were selectively enriched with PCR. The quality and quantity of the enriched libraries were validated using Qubit® (1.0) Fluorometer and the Caliper GX LabChip® GX and had an average fragment size of approximately 260 bp. The libraries were adjusted to 10 nM in Tris-Cl 10 mM, pH 8.5 with 0.1% Tween 20. The TruSeq SR Cluster Kit v3-cBot-HS (Illumina) was used for cluster generation using 10 pM of pooled normalized libraries on the cBOT.

characteristic: ecotype

text: 10 mM MgCl2

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

characteristic: replicate

unit: day

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 1


E-MTAB-4683:Sample 10

characteristic: ENA-CHECKLIST

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: 10 mM MgCl2

text: Pseudomonas syringae DC3000

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 10


E-MTAB-4683:Sample 11

characteristic: ENA-FIRST-PUBLIC

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4683:Sample 11

text: ArrayExpress

text: thale cress

text: 10 mM MgCl2

text: Pseudomonas syringae DC3001

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 11

characteristic: title


E-MTAB-4683:Sample 12

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 12

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: ecotype

text: 10 mM MgCl2

text: Pseudomonas syringae DC3002

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 12


E-MTAB-4683:Sample 13

characteristic: ENA-CHECKLIST

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 13

text: ArrayExpress

text: thale cress

text: 10 mM MgCl2

characteristic: growth condition

text: Pseudomonas syringae DC3003

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

characteristic: replicate

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 13


E-MTAB-4683:Sample 14

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: 10 mM MgCl2

text: Pseudomonas syringae DC3004

characteristic: infect

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 14


E-MTAB-4683:Sample 15

characteristic: ENA-FIRST-PUBLIC

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4683:Sample 15

text: ArrayExpress

text: thale cress

text: 10 mM MgCl2

text: Pseudomonas syringae DC3005

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 15


E-MTAB-4683:Sample 16

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 16

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

text: 10 mM MgCl2

text: Pseudomonas syringae DC3006

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 16

characteristic: title


E-MTAB-4683:Sample 17

characteristic: ENA-CHECKLIST

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 17

text: ArrayExpress

text: thale cress

characteristic: ecotype

text: Sphingomonas melonis Fr1 colonization

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 17


E-MTAB-4683:Sample 18

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 18

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: Sphingomonas melonis Fr1 colonization

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 18


E-MTAB-4683:Sample 19

characteristic: ENA-FIRST-PUBLIC

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4683:Sample 19

text: ArrayExpress

text: thale cress

text: Sphingomonas melonis Fr1 colonization

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 19


E-MTAB-4683:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 2

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 10 mM MgCl2

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 2


E-MTAB-4683:Sample 20

characteristic: ENA-CHECKLIST

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 20

text: ArrayExpress

text: thale cress

characteristic: description

characteristic: ecotype

text: Sphingomonas melonis Fr1 colonization

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 20

characteristic: title


E-MTAB-4683:Sample 21

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

text: public

text: E-MTAB-4683:Sample 21

text: ArrayExpress

text: thale cress

text: Sphingomonas melonis Fr1 colonization

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 21


E-MTAB-4683:Sample 22

text: Institute of Microbiology ETH Zurich

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 22

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: Sphingomonas melonis Fr1 colonization

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 22


E-MTAB-4683:Sample 23

characteristic: ENA-FIRST-PUBLIC

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4683:Sample 23

text: ArrayExpress

text: thale cress

text: Sphingomonas melonis Fr1 colonization

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 23


E-MTAB-4683:Sample 24

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 24

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Sphingomonas melonis Fr1 colonization

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 24


E-MTAB-4683:Sample 25

characteristic: ENA-CHECKLIST

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 25

text: ArrayExpress

text: thale cress

characteristic: description

characteristic: ecotype

text: Sphingomonas melonis Fr1 colonization

text: Pseudomonas syringae DC3000

characteristic: infect

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 25

characteristic: title


E-MTAB-4683:Sample 26

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 26

text: ArrayExpress

text: thale cress

text: Sphingomonas melonis Fr1 colonization

characteristic: growth condition

text: Pseudomonas syringae DC3001

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 26


E-MTAB-4683:Sample 27

characteristic: ENA-FIRST-PUBLIC

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

text: E-MTAB-4683:Sample 27

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: Sphingomonas melonis Fr1 colonization

text: Pseudomonas syringae DC3002

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 27


E-MTAB-4683:Sample 28

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4683:Sample 28

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Sphingomonas melonis Fr1 colonization

text: Pseudomonas syringae DC3003

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 28


E-MTAB-4683:Sample 29

characteristic: ENA-CHECKLIST

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 29

text: ArrayExpress

text: thale cress

characteristic: description

characteristic: ecotype

text: Sphingomonas melonis Fr1 colonization

text: Pseudomonas syringae DC3004

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 29


E-MTAB-4683:Sample 3

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 3

text: ArrayExpress

text: thale cress

text: 10 mM MgCl2

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 3

characteristic: title


E-MTAB-4683:Sample 30

characteristic: ENA-FIRST-PUBLIC

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

text: E-MTAB-4683:Sample 30

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: Sphingomonas melonis Fr1 colonization

text: Pseudomonas syringae DC3000

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 30


E-MTAB-4683:Sample 31

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4683:Sample 31

text: ArrayExpress

text: thale cress

text: Sphingomonas melonis Fr1 colonization

text: Pseudomonas syringae DC3000

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 31


E-MTAB-4683:Sample 32

characteristic: ENA-CHECKLIST

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 32

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: ecotype

text: Sphingomonas melonis Fr1 colonization

text: Pseudomonas syringae DC3000

characteristic: infect

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 32


E-MTAB-4683:Sample 33

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 33

text: ArrayExpress

text: thale cress

text: Methylobacterium extorquens PA1 colonization

characteristic: growth condition

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 33


E-MTAB-4683:Sample 34

characteristic: ENA-FIRST-PUBLIC

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

text: E-MTAB-4683:Sample 34

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 34

characteristic: title


E-MTAB-4683:Sample 35

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4683:Sample 35

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 35


E-MTAB-4683:Sample 36

characteristic: ENA-CHECKLIST

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 36

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: ecotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 36


E-MTAB-4683:Sample 37

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 37

text: ArrayExpress

text: thale cress

characteristic: growth condition

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 37


E-MTAB-4683:Sample 38

characteristic: ENA-FIRST-PUBLIC

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

text: E-MTAB-4683:Sample 38

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 38


E-MTAB-4683:Sample 39

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 39

text: ArrayExpress

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 39

characteristic: title


E-MTAB-4683:Sample 4

characteristic: ENA-CHECKLIST

text: Institute of Microbiology ETH Zurich

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4683:Sample 4

text: ArrayExpress

text: thale cress

text: 10 mM MgCl2

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 4


E-MTAB-4683:Sample 40

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 40

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: ecotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 40


E-MTAB-4683:Sample 41

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 41

text: ArrayExpress

text: thale cress

characteristic: growth condition

text: Pseudomonas syringae DC3000

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 41


E-MTAB-4683:Sample 42

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

text: E-MTAB-4683:Sample 42

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: Pseudomonas syringae DC3001

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 42


E-MTAB-4683:Sample 43

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

characteristic: INSDC status

text: E-MTAB-4683:Sample 43

text: ArrayExpress

text: thale cress

characteristic: common name

text: Pseudomonas syringae DC3002

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 43

characteristic: title


E-MTAB-4683:Sample 44

text: Institute of Microbiology ETH Zurich

text: public

characteristic: SRA accession

text: E-MTAB-4683:Sample 44

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: ecotype

text: Pseudomonas syringae DC3003

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 44


E-MTAB-4683:Sample 45

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 45

text: ArrayExpress

text: thale cress

characteristic: growth condition

text: Pseudomonas syringae DC3004

characteristic: infect

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 45


E-MTAB-4683:Sample 46

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

text: E-MTAB-4683:Sample 46

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: Pseudomonas syringae DC3005

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 46


E-MTAB-4683:Sample 47

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

characteristic: INSDC status

text: E-MTAB-4683:Sample 47

text: ArrayExpress

text: thale cress

characteristic: common name

text: Pseudomonas syringae DC3006

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 47


E-MTAB-4683:Sample 48

text: Institute of Microbiology ETH Zurich

text: public

characteristic: SRA accession

text: E-MTAB-4683:Sample 48

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: ecotype

text: Pseudomonas syringae DC3007

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 48

characteristic: title


E-MTAB-4683:Sample 5

text: Institute of Microbiology ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4683:Sample 5

text: ArrayExpress

text: thale cress

text: 10 mM MgCl2

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: replicate

text: Arabidopsis thaliana

text: Sample 5


E-MTAB-4683:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of Microbiology ETH Zurich

characteristic: INSDC last update

text: public

text: E-MTAB-4683:Sample 6

text: ArrayExpress

text: thale cress

text: 10 mM MgCl2

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: sampling time point

text: Arabidopsis thaliana

text: Sample 6


E-MTAB-4683:Sample 7

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: 10 mM MgCl2

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 7


E-MTAB-4683:Sample 8

text: Institute of Microbiology ETH Zurich

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4683:Sample 8

text: ArrayExpress

text: thale cress

characteristic: common name

text: 10 mM MgCl2

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 8


E-MTAB-4683:Sample 9

text: Institute of Microbiology ETH Zurich

text: public

text: E-MTAB-4683:Sample 9

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: ecotype

text: 10 mM MgCl2

text: Pseudomonas syringae DC3000

characteristic: infect

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 9

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF EDINBURGH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF EDINBURGH

text: Mansour Abdullah

characteristic: collected by

text: April 2014

characteristic: collection date

text: Kuwait

characteristic: geographic location (country and/or sea)

text: Magnoliophyta environmental sample

text: Magnoliophyta environmental sample

text: Metabarcoding rbcL and ITS2


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: 1001 CML

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NCI

text: Day 0

characteristic: day

text: No Additive___Day 0

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: No Additive

characteristic: extraction method

text: USA:MN

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: 1001 CML

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: Mayo Clinic

text: False

text: True

characteristic: public

text: completed

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: 1001 CML

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: 1001 CML

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NCI

text: Day 0

characteristic: day

text: No Additive__Swab_Day 0

characteristic: description

text: True

characteristic: elevation

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: No Additive

text: USA:MN

text: human

text: Homo sapiens

text: 1001 CML

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: False

text: True

text: completed

text: Swab

characteristic: sample source

text: stool

text: human gut metagenome

text: female

text: 1001 CML

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: 1001 CML

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: NCI

text: Day 0

text: RNA Later___Day 0

text: True

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: RNA Later

characteristic: extraction method

text: USA:MN

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: 1001 CML

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: Mayo Clinic

text: False

text: True

characteristic: public

text: completed

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: 1001 CML

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: 1001 CML

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NCI

text: Day 0

characteristic: day

text: Ethanol Fixed___Day 0

characteristic: description

text: True

characteristic: elevation

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: Ethanol Fixed

text: USA:MN

text: human

text: Homo sapiens

text: 1001 CML

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: False

text: True

text: completed

text: stool

text: human gut metagenome

text: female

text: 1001 CML

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: 1001 CML

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: NCI

text: Day 0

text: EDTA___Day 0

text: True

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: EDTA

characteristic: extraction method

text: USA:MN

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: 1001 CML

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: Mayo Clinic

text: False

text: True

characteristic: public

text: completed

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: 1001 CML

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: 1001 CML

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NCI

text: Day 0

characteristic: day

text: FOBT_Pre-Treatment__Day 0

characteristic: description

text: True

characteristic: elevation

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: FOBT

text: USA:MN

text: human

text: Homo sapiens

text: 1001 CML

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: False

text: Pre-Treatment

characteristic: preparation

text: True

text: completed

text: stool

text: human gut metagenome

text: female

text: 1001 CML

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: 1001 CML

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: NCI

text: Day 0

text: FOBT_Post-Treatment__Day 0

text: True

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: FOBT

characteristic: extraction method

text: USA:MN

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: 1001 CML

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: Mayo Clinic

text: False

text: Post-Treatment

text: True

characteristic: public

text: completed

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: 1001 CML

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: 1001 CML

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NCI

text: Day 1

characteristic: day

text: No Additive___Day 1

characteristic: description

text: True

characteristic: elevation

text: urban biome

text: human-associated habitat

text: feces

text: human-gut

text: No Additive

text: USA:MN

text: human

text: Homo sapiens

text: 1001 CML

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: False

text: True

text: completed

text: stool

text: human gut metagenome

text: female

text: 1001 CML

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: 1001 CML

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: NCI

text: Day 1

text: No Additive__Swab_Day 1

text: True

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: No Additive

characteristic: extraction method

text: USA:MN

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: 1001 CML

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: Mayo Clinic

text: False

text: True

characteristic: public

text: completed

text: Swab

characteristic: sample source

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: 1001 CML

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: 1001 CML

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NCI

text: Day 1

characteristic: day

text: RNA Later___Day 1

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: feces

text: human-gut

text: RNA Later

text: USA:MN

text: human

text: Homo sapiens

text: 1001 CML

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: False

text: True

text: completed

text: stool

text: human gut metagenome

text: female

text: 1001 CML

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: 1001 CML

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: NCI

text: Day 1

text: Ethanol Fixed___Day 1

text: True

text: urban biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: Ethanol Fixed

characteristic: extraction method

text: USA:MN

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: 1001 CML

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: Mayo Clinic

text: False

text: True

characteristic: public

text: completed

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: 1001 CML

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: 1001 CML

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NCI

text: Day 1

characteristic: day

text: EDTA___Day 1

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: feces

text: human-gut

text: EDTA

text: USA:MN

text: human

text: Homo sapiens

text: 1001 CML

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: False

text: True

text: completed

text: stool

text: human gut metagenome

text: female

text: 1001 CML

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: 1001 CML

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: NCI

text: Day 1

text: FOBT_Pre-Treatment__Day 1

text: True

text: urban biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: FOBT

characteristic: extraction method

text: USA:MN

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: 1001 CML

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: Mayo Clinic

text: False

text: Pre-Treatment

characteristic: preparation

text: True

characteristic: public

text: completed

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: 1001 CML

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: 1001 CML

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NCI

text: Day 1

characteristic: day

text: FOBT_Post-Treatment__Day 1

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: feces

text: human-gut

text: FOBT

text: USA:MN

text: human

text: Homo sapiens

text: 1001 CML

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: False

text: Post-Treatment

text: True

text: completed

text: stool

text: human gut metagenome

text: female

text: 1001 CML

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: 1001 CML

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: NCI

text: Day 4

text: No Additive___Day 4

text: True

text: urban biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: No Additive

characteristic: extraction method

text: USA:MN

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: 1001 CML

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: Mayo Clinic

text: False

text: True

characteristic: public

text: completed

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: 1001 CML

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: 1001 CML

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NCI

text: Day 4

characteristic: day

text: No Additive___Day 4

characteristic: description

text: True

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: feces

text: human-gut

text: No Additive

text: USA:MN

text: human

text: Homo sapiens

text: 1001 CML

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: False

text: True

text: completed

text: stool

text: human gut metagenome

text: female

text: 1001 CML

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: 1001 CML

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: NCI

text: Day 4

text: No Additive__Swab_Day 4

text: True

text: urban biome

text: human-associated habitat

characteristic: env feature

text: feces

characteristic: env matter

text: human-gut

characteristic: env package

text: No Additive

characteristic: extraction method

text: USA:MN

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: 1001 CML

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: Mayo Clinic

text: False

text: True

characteristic: public

text: completed

text: Swab

characteristic: sample source

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: 1001 CML

characteristic: subject id