name: Hot spring microbial communities from Lasundra 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Hem. North Gujarat University - India

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Hem. North Gujarat University  - India

text: Geothermal areas are the main permanent hot places of the world, and these areas are the major habitats of thermophilic bacteria. In culture independent method, metagenome was isolated using manual and kit based methods. The short gun sequencing of metagenome was performed using Ion torrent PGM platform. The analysis of sequencing data revealed that this spring is dominated by bacterial taxa. MG-RAST based community analysis showed that bacteria were found in dominancy with 99.2% in domain hit distribution. Firmicutes was found to be dominant in domain hit classification followed by proteaobacteria. Moreover, unclassified sequences also found in this metagenome indicate there are possibilities of getting novel organisms.

characteristic: description

text: Hot spring

text: Water reservoir

text: Hot water

text: India

unit: m

characteristic: geographic location (depth)

text: metagenome

text: hot springs metagenome

text: Metagenomic exploration of Lasundra hot spring

text: hot springs metagenome

text: Ion torrent PGM platform

characteristic: sequencing method

text: BAM-LASUNDRA

characteristic: title

text: water

characteristic: water environmental package


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEBITEC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: Draftgenome sequence of Pseudomonas aeruginosa RN21

text: human skin

characteristic: environment (biome)

text: Hospital

characteristic: environment (feature)

text: human skin

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-skin

characteristic: human skin environmental package

text: mimarks-survey

characteristic: investigation type

characteristic: isolate

text: Pseudomonas aeruginosa

characteristic: organism

text: Draft genome sequence of Pseudomonas aeruginosa RN21

characteristic: project name

text: Pseudomonas aeruginosa


RHS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Central Michigan University

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: RHS

tag: Namespace:Central Michigan University

characteristic: depth

text: sediment

text: river

text: water

text: China

characteristic: geographic location (elevation)

text: metagenome

text: uncultured bacterium

text: The microbial community of aquatic sediments influenced by heavy metals

text: uncultured bacterium

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: sediment sample

characteristic: title

type: has member


RS

characteristic: External Id

text: Central Michigan University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: RS

characteristic: Submitter Id

characteristic: collection date

text: sediment

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: uncultured bacterium

text: uncultured bacterium

text: sediment

text: Illumina MiSeq

text: sediment sample


SS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Central Michigan University

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SS

text: sediment

text: river

text: water

text: China

text: metagenome

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: sediment

text: Illumina MiSeq

text: sediment sample


characteristic: External Id

text: Central Michigan University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: depth

text: sediment

text: river

text: water

text: China

characteristic: geographic location (elevation)

text: metagenome

text: uncultured bacterium

text: uncultured bacterium

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: sediment sample

characteristic: title


GS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Central Michigan University

text: public

text: GS

characteristic: collection date

text: sediment

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: uncultured bacterium

text: uncultured bacterium

text: sediment

text: Illumina MiSeq

text: sediment sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Central Michigan University

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sediment

text: river

text: water

text: USA

text: metagenome

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: sediment

text: Illumina MiSeq

text: sediment sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DUNDEE

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Bloodstream from

characteristic: dev stage

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

characteristic: title


text: DUNDEE

text: public

text: Procyclic form RNAseq

characteristic: description

text: Procyclic form

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei


PRIO

text: CEBITEC

text: public

text: PRIO

characteristic: collection date

characteristic: depth

text: Complete genome sequence of Paenibacillus riograndensis SBR5(T)

text: Wheat field

characteristic: environment (biome)

text: Wheat field

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: isolate

text: Paenibacillus riograndensis SBR5

text: Paenibacillus riograndensis SBR5

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Complete genome sequence of Paen Paenibacillus riograndensisibacillus riograndensis SBR5(T)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MICHIGAN STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MICHIGAN STATE UNIVERSITY

text: Properties of Soil Pore Space Regulate Pathways of Plant Residue Decomposition and Community Structure of Associated Bacteria

text: USA

text: 42.24 N 85.24 W

characteristic: lat lon

text: Phylogenetic analysis of bacterial community using PCR amplfied 16S rRNA genes sequenced with 454

characteristic: note

text: mixed culture

characteristic: organism

text: mixed culture

text: Properties of Soil Pore Space Regulate Plant Residue Decomposition


archaea

text: INRA CLERMONT-FERRAND - THEIX

text: public

text: archaea

tag: Namespace:INRA CLERMONT-FERRAND - THEIX

characteristic: Submitter Id

characteristic: collection date

text: gut

characteristic: environment (biome)

text: rumen

characteristic: environment (feature)

text: digestive content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

unit: week

characteristic: host age

text: rumen

characteristic: host body habitat

text: rumen content

characteristic: host body product

text: rumen

characteristic: host body site

text: ovis aries

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

text: metagenome

text: pyrosequencing & IonTorrent

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHINESE ACADEMY OF FORESTRY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CHINESE ACADEMY OF FORESTRY

characteristic: Submitter Id

text: Coastal area

text: Saline soils

text: Saline soils

text: China

characteristic: geographic location (longitude)

text: metagenome

text: Suaeda salsa

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: plant microbome

text: Suaeda salsa

text: pyrosequencing

characteristic: sequencing method

text: 799F-1193R 16S


text: CHINESE ACADEMY OF FORESTRY

text: public

characteristic: collection date

text: Coastal area

characteristic: environment (biome)

text: Saline soils

characteristic: environment (feature)

text: Saline soils

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: Suaeda salsa

text: plant-associated

text: plant microbiome

characteristic: project name

text: Suaeda salsa

text: pyrosequencing


I

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: I

tag: Namespace:University of Zagreb, Faculty of Food Technology and Biotechnology

characteristic: depth

text: Petroleum refinery facilities

characteristic: description

text: marine

text: bay

text: sediment

text: Croatia

characteristic: geographic location (elevation)

text: mimarks-survey

text: marine sediment metagenome

text: RedPet

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: RedPet

characteristic: title


TV

text: University of Zagreb, Faculty of Food Technology and Biotechnology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: TV

characteristic: Submitter Id

characteristic: collection date

text: Tanker berth

text: marine

characteristic: environment (biome)

text: bay

characteristic: environment (feature)

text: sediment

text: Croatia

characteristic: geographic location (longitude)

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: RedPet

text: marine sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: RedPet


US

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: US

text: Svežanj cove

text: marine

text: bay

text: sediment

characteristic: environment (material)

text: Croatia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

text: RedPet

characteristic: project name

text: marine sediment metagenome

text: sediment

text: pyrosequencing

text: RedPet


BP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BP

characteristic: Submitter Id

characteristic: depth

text: Marine gas station

characteristic: description

text: marine

text: bay

text: sediment

text: Croatia

characteristic: geographic location (elevation)

text: mimarks-survey

text: marine sediment metagenome

text: RedPet

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: RedPet

characteristic: title


BI

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: BI

characteristic: collection date

text: Shipyard Uljanik (vent)

text: marine

characteristic: environment (biome)

text: bay

characteristic: environment (feature)

text: sediment

text: Croatia

characteristic: geographic location (longitude)

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: RedPet

text: marine sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: RedPet


BZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BZ

text: Shipyard Uljanik (cove)

text: marine

text: bay

text: sediment

characteristic: environment (material)

text: Croatia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

text: RedPet

characteristic: project name

text: marine sediment metagenome

text: sediment

text: pyrosequencing

text: RedPet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: depth

text: Sediment TV in Erlenmeyer flask - grown aerobically

characteristic: description

text: marine

text: bay

text: sediment

text: Croatia

characteristic: geographic location (elevation)

text: mimarks-survey

text: marine sediment metagenome

text: RedPet

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: RedPet

characteristic: title


text: Universidad de Playa Ancha

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Universidad de Playa Ancha

text: planktonic microbes

characteristic: bio material

text: 10 August 2011

characteristic: collection date

text: Chile

text: Water

characteristic: isolation source

characteristic: lat lon

text: RNA extracts

characteristic: note

text: aquatic metagenome

characteristic: organism

text: aquatic metagenome

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF TASMANIA

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF TASMANIA

text: terrestrial biome

characteristic: environment (biome)

text: Microbial features

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: Biochar 16SrRNA pots

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Biochar-16SrRNA pots trial


text: BGI-SHENZHEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: air

characteristic: air environmental package

characteristic: collection date

text: human

characteristic: common name

text: deciduous woodland

text: harbor

text: air

characteristic: geographic location (altitude)

text: China

text: metagenome

text: Homo sapiens

text: complete genomics sequencing of YH

text: Homo sapiens

text: complete genomics

text: male asian

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ABERSYTWYTH UNIVERSITY

text: public

characteristic: SRA accession

tag: Namespace:ABERSYTWYTH UNIVERSITY

text: turkey

text: host-associated

characteristic: environment (biome)

text: gastrointestinal tract

characteristic: environment (feature)

text: gastrointestinal tract

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Meleagris gallopavo

characteristic: organism

text: Turkey Gastrointestinal Tract Microbiome

text: Meleagris gallopavo

text: Ion Torrent PGM


name: Hot spring microbial communities from Tuva timba

text: Hem. North Gujarat University - India

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Molecular approaches used to analyze the microbial diversity allow the study of uncultivable microorganisms and contribute towards our understanding of the microbial world. In our study, total community DNA was isolated from environmental water sample by manual and kit based methods. Here, we use Ion-torrent PGM platform to sequence metagenome. Analysis of the community DNA revealed that the phyla Firmicutes and Proteobacteria were the most abundant. Moreover, unclassified sequences also found in this metagenome indicate there are possibilities of getting novel organisms.

characteristic: description

text: Hot spring

text: Water reservoir

text: Hot water

text: India

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: hot springs metagenome

text: BAM-TUVA TIMBA

characteristic: project name

text: hot springs metagenome

text: Ion torrent PGM platform

characteristic: sequencing method

text: BAM-TUVA TIMBA

text: water

characteristic: water environmental package


B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: B

characteristic: collection date

characteristic: depth

text: Former coke plant area

text: marine

characteristic: environment (biome)

text: bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Croatia

characteristic: geographic location (elevation)

text: mimarks-survey

text: marine sediment metagenome

text: RedPet

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: RedPet

characteristic: title


Ngari

text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ngari

tag: Namespace:CHINESE ACADEMY OF SCIENCES

characteristic: Submitter Id

text: Replication 1 of control treatment

characteristic: description

text: desert steppe

text: desert steppe

text: soil

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: 16S rRNA

text: soil metagenome

text: soil

characteristic: soil environmental package

text: Ngari soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: collection date

characteristic: depth

text: environmental strains with multidrug resistance phenotype

text: tropical dry soil

characteristic: environment (biome)

text: agricultural fields planted with sorghum

characteristic: environment (feature)

text: surface bulk soil

text: Burkina Faso

text: mimarks-survey

characteristic: isolate

text: Stenotrophomonas maltophilia

text: Comparative genomics of environmental and clinical Stenotrophomonas maltophilia strains with different antibiotic resistance profiles

characteristic: project name

text: Stenotrophomonas maltophilia

text: Roche 454 GS Junior sequencer and Illumina Hiseq 2000

characteristic: sequencing method

text: soil

text: Stenotrophomonas maltophilia BurA1


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: description

text: tropical dry soil

text: surface bulk soil

characteristic: environment (material)

text: Burkina Faso

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: Stenotrophomonas maltophilia

text: Stenotrophomonas maltophilia

text: Roche 454 GS Junior sequencer

text: soil

text: Stenotrophomonas maltophilia BurE1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

tag: Namespace:CNRS and university of Rennes 1

characteristic: collection date

text: Bacterial diversity, aquifer of Betton, PZ3 borehole, recent groundwater, Sample 1

text: subterrestrial habitat

text: phreatic zone

text: underground water

text: France

characteristic: geographic location (depth)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: aerobic

characteristic: oxygenation status of sample

characteristic: ph

text: Micro-Eau

text: metagenome

text: pyrosequencing

unit: ºC

characteristic: temperature

text: B-R_Betton_Recent_groundwater_bacterial_diversity_Sample1

text: water

characteristic: water environmental package


text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Bacterial diversity, aquifer of Betton, PZ3 borehole, recent groundwater, Sample 2

characteristic: description

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: aerobic

text: Micro-Eau

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: B-R_Betton_Recent_groundwater_bacterial_diversity_Sample2

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

characteristic: collection date

text: Bacterial diversity, aquifer of Betton, PZ3 borehole, recent groundwater, Sample 3

text: subterrestrial habitat

text: phreatic zone

text: underground water

text: France

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: aerobic

text: Micro-Eau

text: metagenome

text: pyrosequencing

text: B-R_Betton_Recent_groundwater_bacterial_diversity_Sample3

characteristic: title

text: water


text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Bacterial diversity, aquifer of Betton, PZ6 borehole, old groundwater, Sample 1

characteristic: description

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

text: France

text: metagenome

text: metagenome

text: anaerobic

characteristic: oxygenation status of sample

characteristic: ph

text: Micro-Eau

text: metagenome

text: pyrosequencing

characteristic: temperature

text: B-O_Betton_Old_groundwater_bacterial_diversity_Sample1

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

characteristic: collection date

text: Bacterial diversity, aquifer of Betton, PZ6 borehole, old groundwater, Sample 2

text: subterrestrial habitat

text: phreatic zone

text: underground water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: anaerobic

text: Micro-Eau

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: B-O_Betton_Old_groundwater_bacterial_diversity_Sample2

text: water


text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Bacterial diversity, aquifer of Betton, PZ6 borehole, old groundwater, Sample 3

characteristic: description

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

text: France

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: anaerobic

text: Micro-Eau

text: metagenome

text: pyrosequencing

text: B-O_Betton_Old_groundwater_bacterial_diversity_Sample3

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

characteristic: collection date

text: Bacterial diversity, aquifer of Ploemeur, F9 borehole, recent groundwater, Sample 1

text: subterrestrial habitat

text: phreatic zone

text: underground water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: aerobic

characteristic: oxygenation status of sample

characteristic: ph

text: Micro-Eau

text: metagenome

text: pyrosequencing

text: 16S rRNA

characteristic: target gene

characteristic: temperature

text: P-R1_Ploemeur_Recent_groundwater_1_bacterial_diversity_Sample1

text: water

characteristic: water environmental package


text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Bacterial diversity, aquifer of Ploemeur, F9 borehole, recent groundwater, Sample 2

characteristic: description

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

text: France

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: metagenome

text: aerobic

text: Micro-Eau

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rRNA

text: P-R1_Ploemeur_Recent_groundwater_1_bacterial_diversity_Sample2

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

characteristic: collection date

text: Bacterial diversity, aquifer of Ploemeur, F9 borehole, recent groundwater, Sample 3

text: subterrestrial habitat

text: phreatic zone

text: underground water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: aerobic

characteristic: oxygenation status of sample

characteristic: ph

text: Micro-Eau

text: metagenome

text: pyrosequencing

text: 16S rRNA

text: P-R1_Ploemeur_Recent_groundwater_1_bacterial_diversity_Sample3

characteristic: title

text: water


text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Bacterial diversity, aquifer of Ploemeur, F34 borehole, recent groundwater, Sample 1

characteristic: description

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

text: France

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: aerobic

text: Micro-Eau

text: metagenome

text: pyrosequencing

text: 16S rRNA

characteristic: target gene

characteristic: temperature

text: P-R2_Ploemeur_Recent_groundwater_2_bacterial_diversity_Sample1

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

characteristic: collection date

text: Bacterial diversity, aquifer of Ploemeur, F34 borehole, recent groundwater, Sample 2

text: subterrestrial habitat

text: phreatic zone

text: underground water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: aerobic

text: Micro-Eau

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rRNA

text: P-R2_Ploemeur_Recent_groundwater_2_bacterial_diversity_Sample2

text: water


text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Bacterial diversity, aquifer of Ploemeur, F34 borehole, recent groundwater, Sample 3

characteristic: description

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

text: France

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: aerobic

characteristic: oxygenation status of sample

characteristic: ph

text: Micro-Eau

text: metagenome

text: pyrosequencing

text: 16S rRNA

text: P-R2_Ploemeur_Recent_groundwater_2_bacterial_diversity_Sample3

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PML

text: public

characteristic: SRA accession

characteristic: collection date

characteristic: depth

text: Spatio-temporal survey of bacterial and archaeal diversity and community composition in four contrasting sediments of the Western English Channel Observatory

text: Marine

text: Coastal

text: Sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: PML Benthic Survey

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Benthic Bacteria and Archaea in the WCO


text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Bacterial diversity, aquifer of Saint_Brice_en_coglès, MFT80 borehole, old groundwater, Sample 1

characteristic: description

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

text: France

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

characteristic: organism

text: anaerobic

text: Micro-Eau

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: temperature

text: SB-O1_Saint_Brice_Old_groundwater_1_bacterial_diversity_Sample1

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

characteristic: collection date

text: Bacterial diversity, aquifer of Saint_Brice_en_coglès, MFT80 borehole, old groundwater, Sample 2

text: subterrestrial habitat

text: phreatic zone

text: underground water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: anaerobic

characteristic: oxygenation status of sample

characteristic: ph

text: Micro-Eau

text: metagenome

text: pyrosequencing

text: 16S rRNA

text: SB-O1_Saint_Brice_Old_groundwater_1_bacterial_diversity_Sample2

characteristic: title

text: water


text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Bacterial diversity, aquifer of Saint_Brice_en_coglès, MFT80 borehole, old groundwater, Sample 3

characteristic: description

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

text: France

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

characteristic: organism

text: anaerobic

text: Micro-Eau

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rRNA

text: SB-O1_Saint_Brice_Old_groundwater_1_bacterial_diversity_Sample3

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

characteristic: collection date

text: Bacterial diversity, aquifer of Saint_Brice_en_coglès, F3 borehole, old groundwater, Sample 1

text: subterrestrial habitat

text: phreatic zone

text: underground water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: anaerobic

text: Micro-Eau

text: metagenome

text: pyrosequencing

text: 16S rRNA

characteristic: target gene

characteristic: temperature

text: SB-O2_Saint_Brice_Old_groundwater_2_bacterial_diversity_Sample1

text: water

characteristic: water environmental package


text: CNRS and university of Rennes 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Bacterial diversity, aquifer of Saint_Brice_en_coglès, F3 borehole, old groundwater, Sample 2

characteristic: description

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

text: France

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: anaerobic

characteristic: oxygenation status of sample

characteristic: ph

text: Micro-Eau

text: metagenome

text: pyrosequencing

text: 16S rRNA

text: SB-O2_Saint_Brice_Old_groundwater_2_bacterial_diversity_Sample2

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS and university of Rennes 1

text: public

characteristic: SRA accession

characteristic: collection date

text: Bacterial diversity, aquifer of Saint_Brice_en_coglès, F3 borehole, old groundwater, Sample 3

text: subterrestrial habitat

text: phreatic zone

text: underground water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: anaerobic

text: Micro-Eau

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rRNA

text: SB-O2_Saint_Brice_Old_groundwater_2_bacterial_diversity_Sample3

text: water


C. reginae root

text: UNIVERSITY OF WESTERN ONTARIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: C. reginae root

tag: Namespace:UNIVERSITY OF WESTERN ONTARIO

characteristic: Submitter Id

text: root

characteristic: bio material

text: Cypripedium reginae root growing in Newfoundland, Canada

characteristic: description

text: fen

characteristic: isolation source

text: soil

characteristic: note

text: Cypripedium reginae

text: Cypripedium reginae

text: Cypripedium reginae root NFL


Fraxinus nigra root

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WESTERN ONTARIO

text: public

characteristic: SRA accession

text: Fraxinus nigra root

text: root

text: Fraxinus nigra growing in Newfoundland, Canada

text: Canada

text: fen

text: soil

text: Fraxinus nigra

text: Fraxinus nigra

text: Fraxinus nigra root NFL

characteristic: title


eukaryotes

text: UNIVERSITY OF LEEDS

text: public

text: eukaryotes

tag: Namespace:UNIVERSITY OF LEEDS

characteristic: collection date

text: Glacier

characteristic: environment (biome)

text: Snow

characteristic: environment (feature)

text: Snow

characteristic: environment (material)

text: Iceland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: snow metagenome

characteristic: organism

text: Microbial diversity on Icelandic glaciers and ice caps

characteristic: project name

text: snow metagenome

text: Ion Torrent PGM amplicon sequencing

text: Red snow


bacteria

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEEDS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: bacteria

characteristic: Submitter Id

text: Glacier

text: Snow

text: Snow

text: Iceland

text: mimarks-survey

text: snow metagenome

text: snow metagenome

text: Ion Torrent PGM amplicon sequencing

characteristic: sequencing method

text: Red snow


archaea

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEEDS

text: public

characteristic: SRA accession

text: archaea

characteristic: collection date

text: Glacier

characteristic: environment (biome)

text: Snow

text: Snow

text: Iceland

text: mimarks-survey

text: snow metagenome

text: snow metagenome

text: Ion Torrent PGM amplicon sequencing

text: Red snow

characteristic: title


name: Hot spring microbial communities from Unai sample1

text: Hem. North Gujarat University - India

text: public

text: In the present study, a high-throughput metagenomic sequencing of metagenomic DNA was performed on an Ion Torrent PGM platform for assessment of microbial diversity. Metagenome composed of 688,059 sequences with size 98,567,305 bps with an average length of 182 bps and 45% G+C content. MG-RAST community analysis revealed dominating Bacillus genus in bacterial domain. Remarkably, 20.5% sequences in a poorly characterized group, with versatile presence of commercial enzymes were marked in a functional metagenome analysis.

characteristic: description

text: Hot spring

text: Water Reservoir

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: hot springs metagenome

text: A Comprehensive survey of Microbial Diversity in Hot Spring of Unai

text: hot springs metagenome

text: Ion-Torrent PGM platform

text: BAM-UNAI HOT SPRING METAGENOME

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

text: NIOO KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:NIOO KNAW

characteristic: Submitter Id

text: Plants grown in conducive soil

text: Plant

text: Endosphere

text: Plant

text: Netherlands

text: metagenome

text: metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Miseq

characteristic: sequencing method

text: Conducive


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO KNAW

text: public

characteristic: SRA accession

characteristic: collection date

text: Plants grown in suppressive soil

characteristic: description

text: Plant

characteristic: environment (biome)

text: Endosphere

characteristic: environment (feature)

text: Plant

characteristic: environment (material)

text: Netherlands

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Miseq

text: Suppressive

characteristic: title


characteristic: ENA-CHECKLIST

text: NIOO KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Plants grown in suppressive soil + R. solani

text: Plant

text: Endosphere

text: Plant

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: plant-associated

text: metagenome

text: Miseq

text: Suppressive + R. solani


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WUHAN UNIVERISTY

text: public

characteristic: INSDC status

tag: Namespace:WUHAN UNIVERISTY

characteristic: Submitter Id

characteristic: depth

text: Streptomyces arenae T469

text: soil

text: soil

text: soil

text: China

characteristic: geographic location (elevation)

text: mimarks-survey

text: Streptomyces arenae

characteristic: organism

text: Streptomyces arenae T469

characteristic: project name

text: Streptomyces arenae

text: illumia

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Streptomyces arenae T469


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF TARTU

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF TARTU

characteristic: collection date

text: Day 26

characteristic: description

text: biofilter

characteristic: environment (biome)

text: biofilm

characteristic: environment (feature)

text: anthropogenic environmental material

characteristic: environment (material)

text: Estonia

text: mimarks-survey

characteristic: miscellaneous environmental package

text: biofilter metagenome

text: Investigation of the development of microbial consortia in a newly established horizontal flow soil filter

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 26 I

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF TARTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Day 26

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 26 II


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF TARTU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: collection date

text: Day 26

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

text: mimarks-survey

text: biofilter metagenome

characteristic: organism

characteristic: project name

text: biofilter metagenome

text: Illumina HiSeq2000

characteristic: sequencing method

text: HSSF 26 III


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF TARTU

text: public

text: Day 45

characteristic: description

text: biofilter

characteristic: environment (biome)

text: biofilm

characteristic: environment (feature)

text: anthropogenic environmental material

characteristic: environment (material)

text: Estonia

text: mimarks-survey

characteristic: miscellaneous environmental package

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 45 I

characteristic: title


text: UNIVERSITY OF TARTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Day 45

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 45 II


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF TARTU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: collection date

text: Day 45

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

text: mimarks-survey

text: biofilter metagenome

characteristic: organism

characteristic: project name

text: biofilter metagenome

text: Illumina HiSeq2000

characteristic: sequencing method

text: HSSF 45 III


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF TARTU

text: public

text: Day 64

characteristic: description

text: biofilter

characteristic: environment (biome)

text: biofilm

characteristic: environment (feature)

text: anthropogenic environmental material

characteristic: environment (material)

text: Estonia

text: mimarks-survey

characteristic: miscellaneous environmental package

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 64 I

characteristic: title


text: UNIVERSITY OF TARTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Day 64

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 64 II


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF TARTU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: collection date

text: Day 64

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

text: mimarks-survey

text: biofilter metagenome

characteristic: organism

characteristic: project name

text: biofilter metagenome

text: Illumina HiSeq2000

characteristic: sequencing method

text: HSSF 64 III


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF TARTU

text: public

text: Day 94

characteristic: description

text: biofilter

characteristic: environment (biome)

text: biofilm

characteristic: environment (feature)

text: anthropogenic environmental material

characteristic: environment (material)

text: Estonia

text: mimarks-survey

characteristic: miscellaneous environmental package

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 94 I

characteristic: title


text: UNIVERSITY OF TARTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Day 94

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 94 II


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF TARTU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: collection date

text: Day 94

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

text: mimarks-survey

text: biofilter metagenome

characteristic: organism

characteristic: project name

text: biofilter metagenome

text: Illumina HiSeq2000

characteristic: sequencing method

text: HSSF 94 III


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF TARTU

text: public

text: Day 150

characteristic: description

text: biofilter

characteristic: environment (biome)

text: biofilm

characteristic: environment (feature)

text: anthropogenic environmental material

characteristic: environment (material)

text: Estonia

text: mimarks-survey

characteristic: miscellaneous environmental package

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 150 I

characteristic: title


text: UNIVERSITY OF TARTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Day 150

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF 150 II


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF TARTU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: collection date

text: Day 150

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

text: mimarks-survey

text: biofilter metagenome

characteristic: organism

characteristic: project name

text: biofilter metagenome

text: Illumina HiSeq2000

characteristic: sequencing method

text: HSSF 150 III


Influent

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF TARTU

text: public

text: Influent

text: Filtered influent

characteristic: description

text: biofilter

characteristic: environment (biome)

text: biofilm

characteristic: environment (feature)

text: anthropogenic environmental material

characteristic: environment (material)

text: Estonia

text: mimarks-survey

characteristic: miscellaneous environmental package

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: HSSF influent

characteristic: title


LECA

text: UNIVERSITY OF TARTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LECA

characteristic: Submitter Id

text: Raw LECA

text: biofilter

text: biofilm

text: anthropogenic environmental material

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: biofilter metagenome

text: biofilter metagenome

text: Illumina HiSeq2000

text: LECA


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: collection date

characteristic: depth

text: Replication 1 of N0 treatment

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characteristic: title


characteristic: ENA-FIRST-PUBLIC

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text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC first public

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text: public

characteristic: Submitter Id

characteristic: collection date

text: Replication 1 of N240 treatment in sublayer

text: grass

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: metagenome

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characteristic: ENA-CHECKLIST

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text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC center name

text: public

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text: Inner Mongolia grassland soil


characteristic: ENA-FIRST-PUBLIC

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text: CHINESE ACADEMY OF SCIENCES

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text: public

characteristic: SRA accession

text: Replication 3 of N240 treatment in sublayer

characteristic: description

text: grass

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text: grassland

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text: soil

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text: China

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text: 16S rRNA

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characteristic: title


characteristic: ENA-CHECKLIST

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text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Submitter Id

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text: Replication 4 of N240 treatment in sublayer

text: grass

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text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: 16S rRNA

text: soil metagenome

text: soil

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: depth

text: Replication 5 of N240 treatment in sublayer

text: grass

text: grassland

text: soil

text: China

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

characteristic: organism

text: 16S rRNA

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Inner Mongolia grassland soil


CECT 5292

characteristic: ENA-CHECKLIST

characteristic: External Id

text: UVEG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CECT 5292

text: water surrounding cultivated oysters

characteristic: environment (biome)

text: surface sea water

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Mediterranean Sea

characteristic: geographic location (depth)

text: mimarks-survey

characteristic: isolation and growth condition

text: Nereida ignava

text: Whole genome sequencing of Nereida ignava CECT 5292, type strain

text: Nereida ignava

text: Illumina Miseq

text: strain 2SM4

characteristic: source material identifiers

text: CECT 5292

characteristic: strain

text: Nereida ignava

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: minjie

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: steppe

text: steppe

text: soil

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: transect

characteristic: project name

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text: soil

text: transect


Streptomyces exfoliatus U5319

characteristic: ENA-CHECKLIST

characteristic: External Id

text: WUHAN UNIVERISTY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Streptomyces exfoliatus U5319

text: Streptomyces exfoliatus U5319

characteristic: description

text: high GC

characteristic: environment (biome)

text: Actinomycetes

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

text: mimarks-survey

text: Streptomyces exfoliatus

text: Streptomyces exfoliatus U5319

text: Streptomyces exfoliatus

text: illumia

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Streptomyces exfoliatus U5319


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIMIB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: glacier

text: alpine glacier

text: Cryoconite

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: Lombardia, Valfurva

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: Cryocinites in Forni glacier

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

text: Cryconite in Forni glacier

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIMIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: glacier

characteristic: environment (biome)

text: alpine glacier

text: Endoglacial Sediment

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lombardia, Valfurva

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: organism

text: Cryocinites in Forni glacier

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq

text: Cryconite in Forni glacier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIMIB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: glacier

text: alpine glacier

characteristic: environment (feature)

text: Periglacial Plane

characteristic: environment (material)

text: Italy

text: Lombardia, Valfurva

text: mimarks-survey

text: metagenome

text: Cryocinites in Forni glacier

text: metagenome

text: sediment

text: Illumina MiSeq

characteristic: sequencing method

text: Cryconite in Forni glacier


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIMIB

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: glacier

text: alpine glacier

text: Moraine

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: Lombardia, Valfurva

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: Cryocinites in Forni glacier

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

text: Cryconite in Forni glacier

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MHH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 5'-CCATCTCATCCCTGCGTGTCTCCGAC-TCAG-3', 5'-CCTATCCCCTGTGTGCCTTGGCAGTCTCAG-TC-3'

characteristic: adapters

text: Animal facility

characteristic: environment (biome)

text: Animal facility

text: small intestine

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: day

characteristic: host age

text: small intestine

characteristic: host body habitat

text: small intestine

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter 5

characteristic: host family relationship

characteristic: host genotype

text: adult

characteristic: host life stage

text: male

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: ACGCTCGACA

characteristic: multiplex identifiers

text: mouse gut metagenome

characteristic: organism

text: 8F (5'-AGAGTTTGATCCTGGCTCAG-3'), 541R (5'-WTTACCGCGGCTGCTGG-3'); sequencing primer: 541R

characteristic: pcr primers

text: Interferon-gamma and interleukin-22 cooperate for the induction of interferon-stimulated genes and control of rotavirus infection

characteristic: project name

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: Intestinal microbiota of mouse 52, adult, genotype Il22-/-, Litter 5, small intestine


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Animal facility

characteristic: environment (biome)

text: Animal facility

characteristic: environment (feature)

text: small intestine

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: small intestine

characteristic: host body habitat

text: small intestine

text: house mouse

text: Litter 6

text: adult

text: male

text: host-associated

text: mimarks-survey

text: AGCACTGTAG

text: mouse gut metagenome

text: mouse gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rDNA

text: V1 - V3

text: Intestinal microbiota of mouse 56, adult, genotype Il22-/-, Litter 6, small intestine

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Animal facility

text: Animal facility

text: small intestine

text: Germany

text: small intestine

text: small intestine

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter 1

characteristic: host family relationship

characteristic: host genotype

text: suckling

characteristic: host life stage

text: not determined

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: ACGAGTGCGT

characteristic: multiplex identifiers

text: mouse gut metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: Intestinal microbiota of mouse 14, suckling, genotype Il22-/-, Litter 1, small intestine


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Animal facility

characteristic: environment (biome)

text: Animal facility

characteristic: environment (feature)

text: small intestine

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: small intestine

characteristic: host body habitat

text: small intestine

text: house mouse

text: Litter 1

text: suckling

text: not determined

text: host-associated

text: mimarks-survey

text: ACGCTCGACA

text: mouse gut metagenome

text: mouse gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rDNA

text: V1 - V3

text: Intestinal microbiota of mouse 15, suckling, genotype Il22-/-, Litter 1, small intestine

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Animal facility

text: Animal facility

text: small intestine

text: Germany

text: small intestine

text: small intestine

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter 1

characteristic: host family relationship

characteristic: host genotype

text: suckling

characteristic: host life stage

text: not determined

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: AGACGCACTC

characteristic: multiplex identifiers

text: mouse gut metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: Intestinal microbiota of mouse 16, suckling, genotype Il22-/-, Litter 1, small intestine


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Animal facility

characteristic: environment (biome)

text: Animal facility

characteristic: environment (feature)

text: small intestine

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: small intestine

characteristic: host body habitat

text: small intestine

text: house mouse

text: Litter 1

text: suckling

text: not determined

text: host-associated

text: mimarks-survey

text: AGCACTGTAG

text: mouse gut metagenome

text: mouse gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rDNA

text: V1 - V3

text: Intestinal microbiota of mouse 17, suckling, genotype Il22-/-, Litter 1, small intestine

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Animal facility

text: Animal facility

text: small intestine

text: Germany

text: small intestine

text: small intestine

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter 1

characteristic: host family relationship

characteristic: host genotype

text: suckling

characteristic: host life stage

text: not determined

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: ATCAGACACG

characteristic: multiplex identifiers

text: mouse gut metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: Intestinal microbiota of mouse 19, suckling, genotype Il22-/-, Litter 1, small intestine


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Animal facility

characteristic: environment (biome)

text: Animal facility

characteristic: environment (feature)

text: small intestine

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: small intestine

characteristic: host body habitat

text: small intestine

text: house mouse

text: Litter 2

text: suckling

text: not determined

text: host-associated

text: mimarks-survey

text: ACGAGTGCGT

text: mouse gut metagenome

text: mouse gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rDNA

text: V1 - V3

text: Intestinal microbiota of mouse 27, suckling, genotype B6.A2G-Mx1-Il22-/- , Litter 2, small intestine

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Animal facility

text: Animal facility

text: small intestine

text: Germany

text: small intestine

text: small intestine

characteristic: host body site

text: house mouse

characteristic: host common name

text: Litter 2

characteristic: host family relationship

characteristic: host genotype

text: suckling

characteristic: host life stage

text: not determined

characteristic: host sex

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: ACGCTCGACA

characteristic: multiplex identifiers

text: mouse gut metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

text: mouse gut metagenome

text: pyrosequencing

text: 16S rDNA

characteristic: target gene

text: V1 - V3

characteristic: target subfragment

text: Intestinal microbiota of mouse 28, suckling, genotype B6.A2G-Mx1-Il22-/- , Litter 2, small intestine


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: Animal facility

characteristic: environment (biome)

text: Animal facility

characteristic: environment (feature)

text: small intestine

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: small intestine

characteristic: host body habitat

text: small intestine

text: house mouse

text: Litter 2

text: suckling

text: not determined

text: host-associated

text: mimarks-survey

text: AGACGCACTC

text: mouse gut metagenome

text: mouse gut metagenome

text: pyrosequencing

characteristic: sequencing method

text: 16S rDNA

text: V1 - V3

text: Intestinal microbiota of mouse 29, suckling, genotype B6.A2G-Mx1-Il22-/- , Litter 2, small intestine

characteristic: title