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text: USA:WI:Mendota Lake

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status: PUBLIC

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characteristic: latitude

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characteristic: common name

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text: epilimnetic water sample ME22Aug06EB2R1

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text: TRUE

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characteristic: longitude

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characteristic: common name

text: GAZ:United States of America

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text: epilimnetic water sample ME22Oct01EB2R1

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characteristic: extracted DNA avail now

text: USA:WI:Mendota Lake

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text: freshwater metagenome

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characteristic: ENA-CHECKLIST

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text: TRUE

text: freshwater metagenome

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text: epilimnetic water sample ME23Jul07EB2R2

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characteristic: common name

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text: epilimnetic water sample ME24Feb09EB1R2

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text: TRUE

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characteristic: extracted DNA avail now

text: USA:WI:Mendota Lake

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characteristic: ENA-CHECKLIST

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text: UCSDMI

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text: TRUE

text: freshwater metagenome

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text: epilimnetic water sample ME24Oct00EB2R1

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text: small lake biome

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text: USA:WI:Mendota Lake

characteristic: latitude

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characteristic: common name

text: GAZ:United States of America

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text: epilimnetic water sample ME24Sep02EB1R1

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text: TRUE

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text: USA:WI:Mendota Lake

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text: TRUE

text: freshwater metagenome

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text: epilimnetic water sample ME25Jun07EB2R1

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characteristic: longitude

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characteristic: common name

text: GAZ:United States of America

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text: epilimnetic water sample ME25May05EB2R2

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text: TRUE

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text: USA:WI:Mendota Lake

characteristic: geo loc name

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text: freshwater metagenome

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characteristic: ENA-CHECKLIST

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text: UCSDMI

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text: public

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characteristic: SRA accession

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text: TRUE

text: freshwater metagenome

text: GAZ:United States of America

text: epilimnetic water sample ME26Aug09EB1R2

text: TRUE

text: small lake biome

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text: USA:WI:Mendota Lake

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characteristic: sample type

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characteristic: title


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characteristic: common name

text: GAZ:United States of America

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text: epilimnetic water sample ME26Feb10EB1R2

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text: TRUE

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text: USA:WI:Mendota Lake

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characteristic: ENA-CHECKLIST

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text: UCSDMI

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text: TRUE

text: freshwater metagenome

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text: epilimnetic water sample ME26Jun09EB1R1

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text: small lake biome

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text: TRUE

text: USA:WI:Mendota Lake

characteristic: latitude

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characteristic: common name

text: GAZ:United States of America

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text: epilimnetic water sample ME26Oct09EB2R1

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text: TRUE

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text: USA:WI:Mendota Lake

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text: UCSDMI

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text: TRUE

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text: epilimnetic water sample ME26Sep00EB2R1

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text: small lake biome

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text: TRUE

text: USA:WI:Mendota Lake

characteristic: longitude

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characteristic: common name

text: GAZ:United States of America

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text: epilimnetic water sample ME26Sep01EB2R1

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text: TRUE

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text: USA:WI:Mendota Lake

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characteristic: ENA-CHECKLIST

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text: TRUE

text: freshwater metagenome

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text: epilimnetic water sample ME27Jun03EB1R1

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text: TRUE

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text: epilimnetic water sample ME27Sep07EB1R2

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text: TRUE

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text: TRUE

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text: epilimnetic water sample ME27Sep09EB2R1

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characteristic: latitude

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characteristic: common name

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text: epilimnetic water sample ME28Feb02EB1R2

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text: TRUE

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text: TRUE

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text: epilimnetic water sample ME28Feb11EB1R1

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characteristic: common name

text: GAZ:United States of America

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text: epilimnetic water sample ME28Nov00EB2R1

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text: TRUE

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characteristic: SRA accession

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text: TRUE

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text: epilimnetic water sample ME29Apr09EB1R1

text: TRUE

text: small lake biome

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text: TRUE

text: USA:WI:Mendota Lake

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characteristic: sample type

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characteristic: common name

text: GAZ:United States of America

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text: epilimnetic water sample ME29Aug02EB1R1

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text: TRUE

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characteristic: extracted DNA avail now

text: USA:WI:Mendota Lake

characteristic: geo loc name

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characteristic: ENA-CHECKLIST

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text: TRUE

text: freshwater metagenome

text: GAZ:United States of America

text: epilimnetic water sample ME29Jan10EB1R1

text: TRUE

text: small lake biome

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text: TRUE

text: USA:WI:Mendota Lake

characteristic: latitude

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characteristic: common name

text: GAZ:United States of America

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text: epilimnetic water sample ME29May07EB2R1

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text: TRUE

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characteristic: extracted DNA avail now

text: USA:WI:Mendota Lake

characteristic: geo loc name

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characteristic: sample type

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text: Mendota Lake Eleven year timeseries


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: freshwater metagenome

text: GAZ:United States of America

text: epilimnetic water sample ME30Jul09EB1R2

text: TRUE

text: small lake biome

text: freshwater lake

text: fresh water

text: water

text: fresh water

text: TRUE

text: USA:WI:Mendota Lake

characteristic: longitude

text: freshwater metagenome

characteristic: organism

text: ANL

text: FALSE

text: TRUE

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

text: Mendota Lake Eleven year timeseries


text: UCSDMI

text: public

text: TRUE

text: freshwater metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

text: epilimnetic water sample ME30Sep04EB1R2

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text: TRUE

characteristic: elevation

text: small lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: fresh water

characteristic: env matter

text: water

characteristic: env package

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: USA:WI:Mendota Lake

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: freshwater metagenome

text: ANL

text: FALSE

text: TRUE

characteristic: public

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

text: Mendota Lake Eleven year timeseries


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: freshwater metagenome

text: GAZ:United States of America

text: epilimnetic water sample ME31Aug05EB2R1

text: TRUE

text: small lake biome

text: freshwater lake

text: fresh water

text: water

text: fresh water

text: TRUE

text: USA:WI:Mendota Lake

text: freshwater metagenome

text: ANL

text: FALSE

text: TRUE

text: completed

text: fresh water

characteristic: sample type

text: sequenced (16S)

text: freshwater metagenome

characteristic: title

text: Mendota Lake Eleven year timeseries


text: UCSDMI

text: public

text: TRUE

text: freshwater metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

text: epilimnetic water sample ME3Dec10EB1R1

characteristic: description

text: TRUE

characteristic: elevation

text: small lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: fresh water

characteristic: env matter

text: water

characteristic: env package

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: USA:WI:Mendota Lake

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: freshwater metagenome

characteristic: organism

text: ANL

text: FALSE

text: TRUE

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

text: Mendota Lake Eleven year timeseries


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: freshwater metagenome

text: GAZ:United States of America

text: epilimnetic water sample ME3May11EB1R1

text: TRUE

text: small lake biome

text: freshwater lake

text: fresh water

text: water

text: fresh water

text: TRUE

text: USA:WI:Mendota Lake

characteristic: latitude

text: freshwater metagenome

text: ANL

text: FALSE

text: TRUE

characteristic: public

text: completed

text: fresh water

text: sequenced (16S)

text: freshwater metagenome

text: Mendota Lake Eleven year timeseries


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.14C.BC.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

text: Californian Grassland soil incubated with pyrolized plant material

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.14C.BC.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.14C.BC.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.14C.BC.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.14C.Control.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.14C.Control.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.14C.Control.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.14C.Control.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.14C.Wood.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.14C.Wood.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.14C.Wood.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.14C.Wood.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.20C.BC.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.20C.BC.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.20C.BC.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.20C.BC.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.20C.Control.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.20C.Control.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: Californian Grassland soil incubated with pyrolized plant material

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.20C.Control.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.20C.Control.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.20C.Wood.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.20C.Wood.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Hopland.20C.Wood.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Hopland.20C.Wood.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Start.Hopland.14C.T0.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Start.Hopland.14C.T0.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Start.Hopland.20C.T0.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: grassland soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:OR:Hopland

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Start.Hopland.20C.T0.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:United States of America

text: TRUE

text: cropland biome

text: grassland soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:OR:Hopland

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.20C.BC.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.20C.BC.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.20C.BC.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.20C.BC.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.20C.Control.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.20C.Control.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.20C.Control.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.20C.Control.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.20C.Start.T0.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.20C.Start.T0.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.20C.Wood.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.20C.Wood.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.20C.Wood.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.20C.Wood.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.26C.BC.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.26C.BC.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.26C.BC.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.26C.BC.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.26C.Control.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.26C.Control.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.26C.Control.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.26C.Control.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.26C.Start.T0.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.26C.Start.T0.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.26C.Wood.TP1.01

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.26C.Wood.TP1.02

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: latitude

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: UCSDMI

text: public

text: qiita_sid_1043:1043.Tabonuco.26C.Wood.TP1.03

text: TRUE

text: soil metagenome

characteristic: common name

text: GAZ:Puerto Rico

characteristic: country

characteristic: depth

text: Tropical forest soil

characteristic: description

text: TRUE

characteristic: elevation

text: tropical moist broadleaf forest biome

characteristic: env biome

text: tropical soil

characteristic: env feature

text: soil

characteristic: env matter

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: USA:Puerto Rico:Tabonuco

characteristic: geo loc name

characteristic: host subject id

text: soil metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_1043:1043.Tabonuco.26C.Wood.TP1.04

characteristic: Submitter Id

characteristic: altitude

characteristic: anonymized name

text: TRUE

text: soil metagenome

text: GAZ:Puerto Rico

text: Tropical forest soil

text: TRUE

text: tropical moist broadleaf forest biome

text: tropical soil

text: soil

text: soil

text: soil

text: TRUE

text: USA:Puerto Rico:Tabonuco

characteristic: longitude

text: soil metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: completed

text: Soil

text: Sequenced (16S)

text: soil metagenome


text: university clinic Essen

text: public

tag: Namespace:university clinic Essen

text: human

characteristic: common name

text: genomic mutations of eEF2K in HCC

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: tissue type

text: genomic mutations of eEF2K in HCC


E-MTAB-4958:Sample 1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-4958:Sample 1

tag: Namespace:Fundacion Instituto Leloir - IIBBA CONICET

text: ArrayExpress

characteristic: broker name

text: Protocols: 28°C in PYM broth, 250 rpm, 16 h, harvest at logarithmic phase (0.7-0.8 OD600) bacterial far-red irradiation / dark-adaptation MasterPureTM RNA Purification Kit (Epicentre, Illumina) rRNA removal with Ribo-Zero (Illumina) and TruSeq RNA-seq library preparation

text: wild type genotype

characteristic: genotype

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: dark

characteristic: stimulus

text: Sample 1

characteristic: title


E-MTAB-4958:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fundacion Instituto Leloir - IIBBA CONICET

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4958:Sample 2

text: ArrayExpress

text: wild type genotype

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: dark

text: Sample 2


E-MTAB-4958:Sample 3

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4958:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: far-red

text: Sample 3


E-MTAB-4958:Sample 4

text: public

text: E-MTAB-4958:Sample 4

text: ArrayExpress

text: wild type genotype

text: Xanthomonas campestris pv. campestris

characteristic: organism

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: far-red

text: Sample 4


E-MTAB-4958:Sample 5

text: public

text: E-MTAB-4958:Sample 5

text: ArrayExpress

characteristic: description

text: XccbphP::Spcr + pXccBphP

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: far-red

text: Sample 5


E-MTAB-4958:Sample 6

text: public

text: E-MTAB-4958:Sample 6

text: ArrayExpress

text: XccbphP::Spcr + pXccBphP

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: far-red

text: Sample 6


text: public

text: E-MTAB-36641469444294:Brain_Saline_PND5_SMA_2

tag: Namespace:University of Southern Denmark Department of Biochemistry and Molecular Biology

unit: day

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: RNA purity, integrity and concentration were determined using an Agilent 2100 Bioanalyzer (Agilent Technologies, Inc, USA). Only RNA with a RIN value of 8.0 or higher and a ratio (28s/18s) of above 1.8 was taken forward for sample preparation. Samples were processed for library constructions following the manufactory instructions (Illumina Tru Seq Stranded Total RNA sample preparation v2 Guide, Part #15031048 Rev.E October 2013 - “Low sample protocol”)*. In brief, 0.5 µg of total RNA from each tissue were depleted for cytoplasmic rRNA using the Ribo-Zero ribosomal reduction chemistry, chemically fragmented for 8 min at 94oC, and processed for 1st strand synthesis cDNA and then 2nd strand synthesis using dUTP instead of dTTP. After some purification steps, the cDNA was then end-repaired, purified, adenylated at the 3’-ends, and purified before adding the indexed adaptor sequences using the TruSeq Stranded LT Kit Index set A. Each library preparation was then enriched by 10 cycles of PCR, purified and finally validated in regards to size and concentration. For sizing, libraries were analyzed on the Agilent 2100 Bioanalyzer using a DNA 1000 kit from Agilent Technologies. The Libraries were quantified by qPCR using the KaPa Library quantification Kits (KaPa Biosystems, Cat KK4824). Samples were pooled in sets of 12 libraries, and a final concentration of 16 pM denatured library was used for paired-end deep sequencing using an Illumina HiSeq1500.

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: saline

characteristic: treatment


characteristic: ENA-CHECKLIST

text: University of Southern Denmark Department of Biochemistry and Molecular Biology

text: public

text: E-MTAB-36641469444294:Brain_Saline_PND5_SMA_3

text: ArrayExpress

characteristic: broker name

text: house mouse

text: spinal muscular atrophy

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: title

text: saline


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-36641469444294:Brain_ASO_PND5_SMA_1

text: ArrayExpress

text: house mouse

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

text: 2xSC100 MOE ASO


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-36641469444294:Brain_ASO_PND5_SMA_2

text: ArrayExpress

text: house mouse

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male

text: 2xSC100 MOE ASO


text: public

text: E-MTAB-36641469444294:Brain_ASO_PND5_SMA_3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: spinal muscular atrophy

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: male

text: 2xSC100 MOE ASO


text: public

text: E-MTAB-36641469444294:Liver_Saline_PND5_SMA_1

text: ArrayExpress

text: house mouse

characteristic: common name

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: saline

characteristic: treatment


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-36641469444294:Liver_Saline_PND5_SMA_2

text: ArrayExpress

characteristic: broker name

text: house mouse

text: spinal muscular atrophy

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title

text: saline


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-36641469444294:Liver_Saline_PND5_SMA_3

text: ArrayExpress

text: house mouse

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

text: saline


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-36641469444294:Liver_ASO_PND5_SMA_1

text: ArrayExpress

text: house mouse

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

text: 2xSC100 MOE ASO


text: public

text: E-MTAB-36641469444294:Liver_ASO_PND5_SMA_2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: spinal muscular atrophy

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: 2xSC100 MOE ASO


text: public

text: E-MTAB-36641469444294:Liver_ASO_PND5_SMA_3

text: ArrayExpress

text: house mouse

characteristic: common name

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: 2xSC100 MOE ASO

characteristic: treatment


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-36641469444294:Spinal_cord_Saline_PND5_SMA_1

text: ArrayExpress

characteristic: broker name

text: house mouse

text: spinal muscular atrophy

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spinal cord

text: Mus musculus

text: male

characteristic: title

text: saline


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-36641469444294:Spinal_cord_Saline_PND5SMA_2

text: ArrayExpress

text: house mouse

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: spinal cord

text: Mus musculus

text: male

text: saline


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-36641469444294:Spinal_cord_Saline_PND5SMA_3

text: ArrayExpress

text: house mouse

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: spinal cord

text: Mus musculus

text: female

text: saline


text: public

text: E-MTAB-36641469444294:Spinal_cord_ASO_PND5SMA_1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: spinal muscular atrophy

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spinal cord

text: Mus musculus

text: female

text: 2xSC100 MOE ASO


text: public

text: E-MTAB-36641469444294:Spinal_cord_ASO_PND5SMA_2

text: ArrayExpress

text: house mouse

characteristic: common name

text: spinal muscular atrophy

text: Mus musculus

text: Mus musculus

text: spinal cord

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: 2xSC100 MOE ASO

characteristic: treatment


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-36641469444294:Spinal_cord_ASO_PND5SMA_4

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: RNA purity, integrity and concentration were determined using an Agilent 2100 Bioanalyzer (Agilent Technologies, Inc, USA). Only RNA with a RIN value of 8.0 or higher and a ratio (28s/18s) of above 1.8 was taken forward for sample preparation. Samples were processed for library constructions following the manufactory instructions (Illumina Tru Seq Stranded Total RNA sample preparation v2 Guide, Part #15031048 Rev.E October 2013 - “Low sample protocol”)*. In brief, 0.5 µg of total RNA from each tissue were depleted for cytoplasmic rRNA using the Ribo-Zero ribosomal reduction chemistry, chemically fragmented for 8 min at 94oC, and processed for 1st strand synthesis cDNA and then 2nd strand synthesis using dUTP instead of dTTP. After some purification steps, the cDNA was then end-repaired, purified, adenylated at the 3’-ends, and purified before adding the indexed adaptor sequences using the TruSeq Stranded LT Kit Index set A. Each library preparation was then enriched by 10 cycles of PCR, purified and finally validated in regards to size and concentration. For sizing, libraries were analyzed on the Agilent 2100 Bioanalyzer using a DNA 1000 kit from Agilent Technologies. The Libraries were quantified by qPCR using the KaPa Library quantification Kits (KaPa Biosystems, Cat KK4824). Samples were pooled in sets of 12 libraries, and a final concentration of 16 pM denatured library was used for paired-end deep sequencing using an Illumina HiSeq1500.

text: spinal muscular atrophy

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spinal cord

text: Mus musculus

text: male

characteristic: title

text: 2xSC100 MOE ASO


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Southern Denmark Department of Biochemistry and Molecular Biology

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: HeLa cell culture

text: Homo sapiens

text: female

text: NT siRNA


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: HeLa cell culture

text: Homo sapiens

text: female

text: SMN siRNA


text: WDRC KAUST

text: public

tag: Namespace:WDRC KAUST

characteristic: Submitter Id

characteristic: collection date

text: Sludge

characteristic: environment (biome)

text: MECs

characteristic: environment (feature)

text: Anaerobic Biomass

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: illumina Truseq

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-39101469448482:Hfq-wt_Log_Phase_CL_Repeat2

tag: Namespace:The Hebrew University of Jerusalem, Israel

text: ArrayExpress

characteristic: broker name

text: Protocols: E .coli Strains MG1655 and HM34 were grown overnight in LB at 37 °C with shaking (200 r.p.m.), diluted 100-fold in fresh LB, and re-grown with shaking at 37 °C to log phase (OD600 = 0.5) cells were exposed to 800 mJ of 254 nm UV irradiation (Stratalinker® UV Crosslinker 1800) on a metal block cooled to -20 oC To trim the exposed parts of the RNAs, beads were resuspended in 200 µl of lysis buffer supplied with 0.5 unit of RNase A/T1 mix (Thermo Scientific) without RNase inhibitor, and incubated for 3-15 min at 22 °C or 37 °C. RNase digestion buffer was removed and the beads were washed three times with 200 µl lysis buffer supplied with 0.1 U of SUPERase INTM RNase Inhibitor (Life technologies) at 4 oC. 5’OH ends were phosphorylated and 2'P / 3'P ends were dephopsphorylated by incubation with 40 units of T4 PNK (New England Biolabs) in 80 µl of PNK buffer for 2 hr at 22 °C. PNK reaction mixture was removed and the beads were washed three times with 200 µl lysis buffer at 4 oC. Neighbouring RNAs were ligated overnight using 216 units of T4 RNA Ligase 1 (New England Biolabs) in 80 µl ligase buffer. Ligation mixture was removed and the beads were washed three times with 200 µl lysis buffer at 4 oC. RNA was extracted according to the standard LS-TriReagent protocol (Sigma) RNAtag-Seq protocol (Shishkin et al., 2015)

characteristic: description

text: cross link RNA

characteristic: experimental process

text: Hfq wild type

characteristic: genotype

text: log phase

characteristic: growth condition

text: Escherichia coli str. K-12 substr. MG1655

characteristic: title


text: The Hebrew University of Jerusalem, Israel

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-39101469448482:Hfq-wt_Log_Phase_CL_Repeat3

characteristic: Submitter Id

text: ArrayExpress

text: cross link RNA

text: Hfq wild type

text: log phase


text: public

text: E-MTAB-39101469448482:Hfq-wt_Stationary_Phase_CL_Repeat2

text: ArrayExpress

text: Protocols: E .coli Strains MG1655 and HM34 were grown overnight in LB at 37 °C with shaking (200 r.p.m.), diluted 100-fold in fresh LB, and re-grown with shaking at 37 °C to stationary phase (6 hr) cells were exposed to 800 mJ of 254 nm UV irradiation (Stratalinker® UV Crosslinker 1800) on a metal block cooled to -20 oC To trim the exposed parts of the RNAs, beads were resuspended in 200 µl of lysis buffer supplied with 0.5 unit of RNase A/T1 mix (Thermo Scientific) without RNase inhibitor, and incubated for 3-15 min at 22 °C or 37 °C. RNase digestion buffer was removed and the beads were washed three times with 200 µl lysis buffer supplied with 0.1 U of SUPERase INTM RNase Inhibitor (Life technologies) at 4 oC. 5’OH ends were phosphorylated and 2'P / 3'P ends were dephopsphorylated by incubation with 40 units of T4 PNK (New England Biolabs) in 80 µl of PNK buffer for 2 hr at 22 °C. PNK reaction mixture was removed and the beads were washed three times with 200 µl lysis buffer at 4 oC. Neighbouring RNAs were ligated overnight using 216 units of T4 RNA Ligase 1 (New England Biolabs) in 80 µl ligase buffer. Ligation mixture was removed and the beads were washed three times with 200 µl lysis buffer at 4 oC. RNA was extracted according to the standard LS-TriReagent protocol (Sigma) RNAtag-Seq protocol (Shishkin et al., 2015)

text: cross link RNA

text: Hfq wild type

text: stationary phase

characteristic: organism


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-39101469448482:Hfq-wt_Stationary_Phase_CL_Repeat3

text: ArrayExpress

text: cross link RNA

text: Hfq wild type

text: stationary phase


characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-39101469448482:Hfq-wt_Iron_Limitation_CL_Repeat1

text: ArrayExpress

text: Protocols: E .coli Strains MG1655 and HM34 were grown overnight in LB at 37 °C with shaking (200 r.p.m.), diluted 100-fold in fresh LB, and re-grown with shaking at 37 °C to log phase (OD600 = 0.5), with the addition of 2,2'-Dipyridyl (200 µM, 30 min) cells were exposed to 800 mJ of 254 nm UV irradiation (Stratalinker® UV Crosslinker 1800) on a metal block cooled to -20 oC To trim the exposed parts of the RNAs, beads were resuspended in 200 µl of lysis buffer supplied with 0.5 unit of RNase A/T1 mix (Thermo Scientific) without RNase inhibitor, and incubated for 3-15 min at 22 °C or 37 °C. RNase digestion buffer was removed and the beads were washed three times with 200 µl lysis buffer supplied with 0.1 U of SUPERase INTM RNase Inhibitor (Life technologies) at 4 oC. 5’OH ends were phosphorylated and 2'P / 3'P ends were dephopsphorylated by incubation with 40 units of T4 PNK (New England Biolabs) in 80 µl of PNK buffer for 2 hr at 22 °C. PNK reaction mixture was removed and the beads were washed three times with 200 µl lysis buffer at 4 oC. Neighbouring RNAs were ligated overnight using 216 units of T4 RNA Ligase 1 (New England Biolabs) in 80 µl ligase buffer. Ligation mixture was removed and the beads were washed three times with 200 µl lysis buffer at 4 oC. RNA was extracted according to the standard LS-TriReagent protocol (Sigma) RNAtag-Seq protocol (Shishkin et al., 2015)

text: cross link RNA

text: Hfq wild type

text: iron limitation in log phase


characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-39101469448482:Hfq-wt_Iron_Limitation_CL_Repeat2

text: ArrayExpress

text: cross link RNA

text: Hfq wild type

text: iron limitation in log phase


characteristic: External Id

text: public

text: E-MTAB-39101469448482:Hfq-Flag_Log_Phase_CL_delta_gcvB_delta_R1_gcvB_Repeat1

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: log phase


characteristic: INSDC center name

text: public

text: E-MTAB-39101469448482:Hfq-Flag_Log_Phase_CL_delta_gcvB_delta_R1_gcvB_Repeat2

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: log phase


characteristic: INSDC first public

text: public

text: E-MTAB-39101469448482:Hfq-Flag_Log_Phase_CL_delta_gcvB_delta_R1_gcvB_Repeat3

text: ArrayExpress

text: cross link RNA

text: Hfq-flag

text: log phase


text: public

text: E-MTAB-39101469448482:Hfq-Flag_Log_Phase_CL_delta_gcvB_pgcvB_Repeat1

text: ArrayExpress

characteristic: broker name

text: cross link RNA

text: Hfq-flag

text: log phase


text: public

text: E-MTAB-39101469448482:Hfq-Flag_Log_Phase_CL_delta_gcvB_pgcvB_Repeat2

text: ArrayExpress

characteristic: description

text: cross link RNA

text: Hfq-flag

text: log phase