characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: TCTCAGAGC

text: uncultured fungus

characteristic: organism

text: VLJ

text: uncultured fungus

text: Ion Torrent

text: ITS region

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

unit: DD

text: mimarks-survey

text: miscellaneous natural or artificial environment

text: CGATCGATC

characteristic: multiplex identifiers

text: uncultured fungus

text: AGCTGCGTTCTTCATCGATGC,CTTGGTCATTTAGAGGAAGTA

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured fungus

text: Ion Torrent

characteristic: sequencing method

text: ITS region

characteristic: target gene

characteristic: target subfragment

type: has member


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: ACGTACACT

text: uncultured fungus

characteristic: organism

text: VLJ

text: uncultured fungus

text: Ion Torrent

text: ITS region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: TGCATGCAT

characteristic: multiplex identifiers

text: uncultured fungus

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured fungus

text: Ion Torrent

text: ITS region


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: TCACTCACG

text: uncultured fungus

text: VLJ

text: uncultured fungus

text: Ion Torrent

characteristic: sequencing method

text: ITS region

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: CTGTCTGTG

text: uncultured fungus

characteristic: organism

text: VLJ

text: uncultured fungus

text: Ion Torrent

text: ITS region

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: TGACGATAG

characteristic: multiplex identifiers

text: uncultured fungus

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured fungus

text: Ion Torrent

text: ITS region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: ACGTCGACG

text: uncultured fungus

text: VLJ

text: uncultured fungus

text: Ion Torrent

characteristic: sequencing method

text: ITS region

characteristic: target gene

characteristic: target subfragment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences

text: ArrayExpress

characteristic: broker name

text: stiff brome

unit: hour

characteristic: day length

text: Protocols: Leaf material was collected and flash frozen i) in the afternoon (8 hours after lights on) before cold treatment and the next day 8 hours after cold treatment and ii) in the morning (at lights on) before cold treatment, 4 weeks after cold treatment and 9 weeks after cold treatment. Seeds were germinated and initially grown in a greenhouse at a neutral day length (12 hours of light), 17°C and a minimum artificial light intensity of 150 µmol/m2s. Depending on the species, one to eight week old plants were randomized and distributed to two cold chambers with short day (8 hours of light), 6°C and a light intensity of 50 µmol/m2s. Cold (6°C) with short day (8 hours of light), and a light intensity of 50 µmol/m2s. Flash frozen leaves were individually homogenized using a TissueLyser (Qiagen Retsch) and total RNA was isolated (from each leaf) using RNeasy Plant Mini Kit (Qiagen) following the manufacturer’s instructions. The purity and integrity of total RNA extracts was determined using a NanoDrop 8000 UV-Vis Spectrophotometer (Thermo Scientific) and 2100 Bioanalyzer (Agilent), respectively. Strand-specific TruSeq RNA-seq library prep (Illumina)

text: line BD1-1

characteristic: genotype

text: single

characteristic: individual

unit: mol m-2 s-1

characteristic: light intensity

text: Brachypodium distachyon

characteristic: organism

text: Brachypodium distachyon

text: leaf

characteristic: organism part

text: Brachypodium distachyon

unit: Celsius

characteristic: temperature

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: stiff brome

characteristic: common name

text: line BD1-1

text: single

text: Brachypodium distachyon

text: Brachypodium distachyon

text: leaf

text: Brachypodium distachyon


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: stiff brome

characteristic: description

text: line BD1-1

text: mix

text: Brachypodium distachyon

text: Brachypodium distachyon

text: leaf

text: Brachypodium distachyon


text: public

text: ArrayExpress

characteristic: day length

text: variety Igri

characteristic: genotype

text: mix

characteristic: individual

characteristic: light intensity

text: Hordeum vulgare

characteristic: organism

text: Hordeum vulgare

text: leaf

text: Hordeum vulgare


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: variety Igri

text: single

text: Hordeum vulgare

text: Hordeum vulgare

text: leaf

characteristic: organism part

text: Hordeum vulgare

characteristic: temperature

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type

text: single

text: Melica nutans

text: Melica nutans

text: leaf

text: Melica nutans


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: wild type

text: mix

text: Melica nutans

text: Melica nutans

text: leaf

text: Melica nutans


text: public

text: ArrayExpress

characteristic: day length

characteristic: description

text: wild type

characteristic: genotype

text: mix

characteristic: individual

text: Nardus stricta

text: Nardus stricta

text: leaf

text: Nardus stricta


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: wild type

text: single

characteristic: light intensity

text: Nardus stricta

characteristic: organism

text: Nardus stricta

text: leaf

text: Nardus stricta


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: wild type

text: mix

text: Stipa lagascae

text: Stipa lagascae

text: leaf

characteristic: organism part

text: Stipa lagascae

characteristic: temperature

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type

text: single

text: Stipa lagascae

text: Stipa lagascae

text: leaf

text: Stipa lagascae


characteristic: External Id

text: THE UNIVERSITY OF ADELAIDE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:THE UNIVERSITY OF ADELAIDE

characteristic: collection date

text: Sequencing Batch Reactor

characteristic: environment (biome)

text: Aeration tank

characteristic: environment (feature)

text: Activated Sludge

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: 34.578663 S

characteristic: geographic location (latitude)

text: 138.926986 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: Winery wastewater

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Winery wastewater

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Hangzhou cancer hospital

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Hangzhou cancer hospital

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: External Id

text: UNIVERSITY OF MELBOURNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF MELBOURNE

characteristic: Submitter Id

text: Enterococcus faecium

text: Enterococcus faecium


text: DTU Systems Biology

text: public

tag: Namespace:DTU Systems Biology

text: International Reference Laboratory of Mycobacteriology, Copenhagen, Denmark

characteristic: collected by

characteristic: collection date

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Heater-Cooler Unit

characteristic: isolation source

text: 55.6638 N 12.5897 E

characteristic: lat lon

text: Mycobacterium chimaera

text: Mycobacterium chimaera

text: M. chimaera MCD04


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU Systems Biology

characteristic: INSDC last update

text: public

text: Denmark

text: Heater-Cooler Unit

text: 55.6638 N 12.5897 E

text: Mycobacterium chimaera

text: Mycobacterium chimaera

text: M. chimaera MCD38


text: DTU Systems Biology

text: public

characteristic: INSDC status

text: Denmark

text: Heater-Cooler Unit

text: 55.6638 N 12.5897 E

text: Mycobacterium chimaera

characteristic: organism

text: Mycobacterium chimaera

text: M. chimaera MCD14


characteristic: External Id

text: DTU Systems Biology

text: public

text: Denmark

text: Heater-Cooler Unit

text: 55.6638 N 12.5897 E

text: Mycobacterium chimaera

text: Mycobacterium chimaera

text: M. chimaera MCD54

characteristic: title


text: DTU Systems Biology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Denmark

text: Heater-Cooler Unit

text: 55.6638 N 12.5897 E

text: Mycobacterium chimaera

text: Mycobacterium chimaera

text: M. chimaera MCD89


text: DTU Systems Biology

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Denmark

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: BAL

text: 55.6638 N 12.5897 E

text: Mycobacterium chimaera

text: Mycobacterium chimaera

text: M. chimaera MCV82


text: DTU Systems Biology

text: public

characteristic: collection date

text: Italy

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: isolate

text: BAL

text: Mycobacterium chimaera

text: Mycobacterium chimaera

text: M. chimaera FI-01069


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN, DEPARTMENT OF BIOLOGY

text: Xanthomonas retroflexus is a soil bacterium isolated from an agricultural field in Denmark, showing synergistic interaction when grown in a four-species biofilm consortium. Here, we report the genome of X. retroflexus with a size of 4.44 mbp. DNA sequencing library was prepared using the NEBNext Quick DNA Sample prep. Master Mix 2 (New England Biolabs Inc., Ipswitch, MA, USA) according to the manufacturer’s protocol. The tagged library was sequenced as 250 bp paired end reads using the Illumina MiSeq platform (Illumina, San Diego, CA, USA).

characteristic: description

text: Xanthomonas retroflexus

text: Xanthomonas retroflexus

text: Draft Genome of Xanthomonas retroflexus strain Sp953


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RCPCM

text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Isolated gut microbial species


text: RCPCM

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Escherichia coli

text: Escherichia coli

text: Isolated gut microbial species


characteristic: External Id

text: RCPCM

text: public

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: Isolated gut microbial species


text: IARI

characteristic: INSDC center name

text: public

text: Meloidogyne graminicola, rice root knot nematode (RRKN) is primarily important pest of rice in the south-east asia, leading to substantial yearly crop losses. To enable basic and applied research of this important pest, we sequenced the M. graminicolagenome to obtain a high-quality reference sequence. Here, we discuss the basic properties of the genome and transcriptome and describe patterns of genome evolution in M. graminicola and its close relatives. Our analyses and genome annotations are presented in a web portal, Meloidogyne graminicola genomic resource, to facilitate public access.

text: juvenile

characteristic: dev stage

text: Meloidogyne graminicola

text: Meloidogyne graminicola

text: The draft genome sequence of the rice root-knot nematode Meloidogyne graminicola

characteristic: title


attachment

text: WEIZMANN INSTITUTE OF SCIENCE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: attachment

tag: Namespace:WEIZMANN INSTITUTE OF SCIENCE

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: CENTRE FOR ECOLOGY AND HYDROLOGY

text: public

tag: Namespace:CENTRE FOR ECOLOGY AND HYDROLOGY

text: Scots pine

text: mtDNA contigs isolated from assembly of total genomic DNA

text: Pinus sylvestris

text: Pinus sylvestris

text: mitochondrial sequence


text: PHE

text: public

text: GBS_serotyping validation

text: Streptococcus agalactiae

text: Streptococcus agalactiae


text: Animal and Plant Health Agency (APHA)

text: public

tag: Namespace:Animal and Plant Health Agency (APHA)

text: APHA

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica

characteristic: serovar

text: Salmonella isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DUKE UNIV

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:DUKE UNIV

text: ENVO:urban biome

characteristic: environment (biome)

text: ENVO:human-associated habitat

characteristic: environment (feature)

text: ENVO:feces

characteristic: environment (material)

text: Bangladesh

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: human gut metagenome

characteristic: organism

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Human cholera susceptibility


characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:VIB, Vesalius Research Center, Belgium VIB, Center for Cancer Biology KUL, Department of Oncology; Belgium

characteristic: Submitter Id

text: not available

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: house mouse

characteristic: common name

text: Protocols: 5T33 inoculated mice take approximately 3 weeks to develop MM while 5T2 inoculated mice take approximately 3-4 months. At that point, bone marrow was isolated by flushing the long bones. Briefly, bone marrow was flushed out, filtered using a nylon gause and subjected to red blood cell lysis. Samples were washed by PBS supplemented with 1% BSA and 0.01% azide. Next, cells were stained with anti-idiotype antibodies (in-house production) and anti-CD11b-FITC (ImTec Diagnostics, Antwerp, Belgium) for 30min at 4°C. Following washing with PBS/BSA/azide, the samples were incubated with the secondary antibody rat anti-muis IgG1-APC (BD Bioscience, Erembodegem, Belgium) for 30min at 4°C. After the last washing step, samples were dissolved in PBS/BSA azide supplemented with 2µl 7AAD (BD Bioscience) per million cells. Tumor cells were FACS sorted. To obtain >95% pure tumor populations, we gated out CD11b and 7AAD-positive cells followed by positive selection of anti-idiotype positive cells. C57BL/KaLwRij and C57BL/6 mice were purchased from Envigo (Horst, Nederland). Mice were housed according to the approved conditions by the Ethical Committee for Animal Experiments of the Vrije Universiteit Brussel (license no. LA1230281). 5T33 and 5T2 models were maintained as previously described (35). The 5TGM1 cell line was cultured at 37°C and 5% CO2 in RPMI-1640 medium (Lonza, Basel, Switserland) supplemented with 100U/ml penicillin/streptomycin, 1mM Na-pyruvate, 2mM glutamine (Gibco, Eggenstein, Germany) and 10% fetal calf serum (FCS, Hyclone, UT, USA). DNA from 5TGM1 cells, sorted 5T33 and 5T2, and tails was isolated using the Wizard Genomic DNA purification kit (Promega, Madison, WI, USA). DNA was dissolved in 80µl PBS + 4µl RNAse A and incubated for 10min at 37°C. After adding proteinase K and incubation for 10min at 56°C, DNA was purified using the Qiamp DNA mini kit according to manufactures instructions. (Qiagen) DNA was eluted in 100µl 10mM Tris and stored at -80°C for further processing. Whole-genome DNA libraries of 2 murine models, 1 cell line and 4 tails were prepared with Illumina’s TruSeq DNA sample preparation kit V2 according to the manufacturer’s instructions.

characteristic: description

text: multiple myeloma

characteristic: disease

text: Mus musculus

text: Mus musculus

text: bone marrow (tumor)

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIB, Vesalius Research Center, Belgium VIB, Center for Cancer Biology KUL, Department of Oncology; Belgium

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

unit: week

text: ArrayExpress

text: house mouse

text: multiple myeloma

text: Mus musculus

text: Mus musculus

text: bone marrow (tumor)

text: Mus musculus

text: female


characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

unit: month

characteristic: age

text: ArrayExpress

text: house mouse

text: multiple myeloma

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow (tumor)

text: Mus musculus

text: male


text: public

text: not available

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Mus musculus

text: Mus musculus

text: tail

text: Mus musculus

text: not available


Brandvlei

text: public

text: Brandvlei

tag: Namespace:Department of Microbiology and Plant Pathology

characteristic: collection date

text: pond

characteristic: environment (biome)

text: hot spring

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: Brandvlei metavirome

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: Brandvlei water

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JEJU NATIONAL UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:JEJU NATIONAL UNIVERSITY

characteristic: Submitter Id

text: JC Chae

characteristic: collected by

text: Yes

characteristic: environmental sample

text: compost

characteristic: isolation source

text: Ochrobactrum anthropi

characteristic: organism

text: Ochrobactrum anthropi

text: Genome sequence of Ochrobactrum anthropi strain AM3 isolated from compost


text: public

tag: Namespace:Department of Evolutionary Biology and Environmental Studies

text: Escherichia coli str. K-12 substr. MG1655

text: Rec+ replicate 2 indole-adapted subpopulation


text: Department of Evolutionary Biology and Environmental Studies

text: public


text: Streptococcus pyogenes

characteristic: ArrayExpress-Species

text: SC

text: public

text: Streptococcus pyogenes

characteristic: common name

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: Mus Musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: title


text: Homo sapiens

characteristic: ENA-CHECKLIST

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: public

text: Rec+ replicate 2 total population clones


characteristic: ENA-LAST-UPDATE

text: public

text: Rec+ replicate total population clones


CECT 7734

characteristic: External Id

text: UVEG

text: public

text: CECT 7734

characteristic: collection date

text: seawater

characteristic: environment (biome)

text: seawater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Vibrio quintilis

text: Whole genome sequencing of Vibrio quintilis CECT 7734T, type strain

characteristic: project name

text: Vibrio quintilis

text: Illumina Miseq

characteristic: sequencing method

text: Vibrio quintilis CECT 7734T

text: water

characteristic: water environmental package


Copper.M.ABI.a

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Copper.M.ABI.a

characteristic: Submitter Id

text: uncultured bacterium

characteristic: common name

text: copper specimen in groundwater containing sterilized bentonite and biosides

characteristic: description

text: groundwater

text: manipulated groundwater mesocosm

text: biofilm

text: water

characteristic: environmental package

text: Finland

text: mimarks-survey

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: ACGCATAGT

characteristic: multiplex identifiers

text: uncultured bacterium

characteristic: organism

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: MICOR

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: target gene

characteristic: target subfragment

text: Copper.M.ABI.a

characteristic: title


Copper.M.ABI.b

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

text: public

text: Copper.M.ABI.b

characteristic: collection date

text: uncultured bacterium

text: groundwater

characteristic: environment (biome)

text: manipulated groundwater mesocosm

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: water

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: TGACTGACT

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: MICOR

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

characteristic: sequencing method

text: Bacterial 16S rRNA gene

text: Copper.M.ABI.b


Copper.M.BS.a

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Copper.M.BS.a

characteristic: Submitter Id

text: uncultured bacterium

characteristic: common name

text: copper specimen in groundwater containing sterilized bentonite

characteristic: description

text: groundwater

text: manipulated groundwater mesocosm

text: biofilm

text: water

characteristic: environmental package

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: CAGTCAGCG

characteristic: multiplex identifiers

text: uncultured bacterium

characteristic: organism

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: MICOR

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: target gene

text: Copper.M.BS.a


Copper.M.BS.b

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

text: public

text: Copper.M.BS.b

characteristic: collection date

text: uncultured bacterium

text: groundwater

characteristic: environment (biome)

text: manipulated groundwater mesocosm

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: water

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: AGACAGACT

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: MICOR

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: target subfragment

text: Copper.M.BS.b

characteristic: title


Copper.M.BI.a

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Copper.M.BI.a

characteristic: Submitter Id

text: uncultured bacterium

characteristic: common name

text: copper specimen in groundwater containing unsterilized bentonite

characteristic: description

text: groundwater

text: manipulated groundwater mesocosm

text: biofilm

text: water

characteristic: environmental package

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: TGTGTGTGC

characteristic: multiplex identifiers

text: uncultured bacterium

characteristic: organism

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: MICOR

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

characteristic: sequencing method

text: Bacterial 16S rRNA gene

text: Copper.M.BI.a


Copper.M.BI.b

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

text: public

text: Copper.M.BI.b

characteristic: collection date

text: uncultured bacterium

text: groundwater

characteristic: environment (biome)

text: manipulated groundwater mesocosm

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: water

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CACACGCGT

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: MICOR

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: target gene

text: Copper.M.BI.b


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: organism

text: Rec+ replicate 1 indole-adapted subpopulation

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cambridge

text: public

tag: Namespace:University of Cambridge

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Sequencing libraries were produced following either the standard Illumina mRNA-seq protocol (polyA selection, no strand specificity) or strand-specific total RNA-seq (ribosomal RNA depletion and dUTP for second strand elimination).

characteristic: description

characteristic: genotype

text: 2i (N2B27 + 3uM CHIR99021, 1uM PD0325901)

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex


text: University of Cambridge

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


text: University of Cambridge

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: high expression of Rex1::GFP

characteristic: phenotype

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Cambridge

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: low expression of Rex1::GFP

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Food Research

text: public

tag: Namespace:Institute  of Food Research

characteristic: collection date

text: Term infant

text: gut

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: feces metagenome

text: ELBW infant microbiome

characteristic: project name

text: feces metagenome

text: 16S rRNA sequencing

characteristic: sequencing method

text: Term infant


text: Mus musculus

tag: attribute

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: MUS MUSCULUS


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Ca102431-sc-2012-12-19T14:31:21Z-1529018

characteristic: anonymized name

characteristic: collection date

text: Chlamydophila abortus

text: Chlamydia abortus

characteristic: organism

text: Chlamydia abortus

characteristic: strain

characteristic: title


text: SC

text: public

text: Chlamydophila abortus

text: Chlamydia abortus

text: Chlamydia abortus


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: BLOOD CELLS

characteristic: sample description

text: Mus musculus

text: MUS MUSCULUS


characteristic: ENA-CHECKLIST

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

text: public

text: Ileum genetic trial 42 d group D

characteristic: description

text: chicken

characteristic: environment (biome)

text: ileum content

characteristic: environment (feature)

text: ileum content

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA genetic trial

characteristic: project name

text: metagenome

text: shotgun

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHU Clermont-ferrand

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CHU Clermont-ferrand

characteristic: Submitter Id

characteristic: collection date

text: France

text: diseased

characteristic: host health state

text: human

characteristic: host scientific name

text: WI1 isolate

characteristic: isolate

text: Clinical isolate

characteristic: isolation source

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli producing the carbapenemase KPC-3 isolated form patient in France.


characteristic: ENA-CHECKLIST

text: CHU Clermont-ferrand

characteristic: INSDC center name

text: public

text: France

characteristic: geographic location (country and/or sea)

text: diseased

text: human

text: WI2 isolate

text: Clinical isolate

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli producing the MCR-1, OXA-48 and KPC-28 isolated form patient in France

characteristic: title


ATCC 42132 sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SCIENCE FOR LIFE LABORATORY

text: public

text: ATCC 42132 sample 1

tag: Namespace:SCIENCE FOR LIFE LABORATORY

characteristic: mating type

text: Malassezia sympodialis ATCC 42132

text: Malassezia sympodialis ATCC 42132

text: ATCC 42132

characteristic: strain

text: Malassezia sympodialis ATCC 42132 sample 1


ATCC 42132 sample 2

characteristic: External Id

text: SCIENCE FOR LIFE LABORATORY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ATCC 42132 sample 2

text: Malassezia sympodialis ATCC 42132

text: Malassezia sympodialis ATCC 42132

text: ATCC 42132

text: Malassezia sympodialis ATCC 42132 sample 2


ATCC 42132 virtual sample

text: SCIENCE FOR LIFE LABORATORY

text: public

characteristic: SRA accession

text: ATCC 42132 virtual sample

characteristic: Submitter Id

text: Virtual sample derived from ATCC 42132 samples 1 and 2 (ERS1463710 and ERS1463711)

characteristic: description

text: Malassezia sympodialis ATCC 42132

text: Malassezia sympodialis ATCC 42132

text: ATCC 42132

text: Malassezia sympodialis ATCC 42132 virtual sample


text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

text: Complete genome sequence of bacteriophages LF82_P10 infecting the E. coli strain LF82

text: Escherichia coli

text: Escherichia coli


text: EAWAG

text: public

text: ancestor with gfp marker

text: Pseudomonas stutzeri A1501

text: Pseudomonas stutzeri A1501

text: genomic DNA from pseudomonas stutzeri


text: EAWAG

text: public

text: ancestor with echerry marker

text: Pseudomonas stutzeri A1501

text: Pseudomonas stutzeri A1501

text: genomic DNA from pseudomonas stutzeri


text: EAWAG

text: public

text: evolved at pH 7.5 with echerry marker

text: Pseudomonas stutzeri A1501

text: Pseudomonas stutzeri A1501

text: genomic DNA from pseudomonas stutzeri


text: EAWAG

text: public

text: evolved at pH 7.5 with gfp marker

text: Pseudomonas stutzeri A1501

text: Pseudomonas stutzeri A1501

text: genomic DNA from pseudomonas stutzeri


text: EAWAG

text: public

text: evolved at pH 6.5 with echerry marker

text: Pseudomonas stutzeri A1501

text: Pseudomonas stutzeri A1501

text: genomic DNA from pseudomonas stutzeri


text: EAWAG

text: public

text: evolved at pH 6.5 with gfp marker

text: Pseudomonas stutzeri A1501

text: Pseudomonas stutzeri A1501

text: genomic DNA from pseudomonas stutzeri


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: treatment room


text: MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: treatment room


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF HASSELT

text: public

tag: Namespace:UNIVERSITY OF HASSELT

characteristic: collection date

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Belgium

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: primer comparison

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soilsample


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES, CHINESE ACADEMY OF SCIENCES

characteristic: Submitter Id

text: anaerobic sludge

text: China

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: resistome of anaerobic sludge

text: metagenome

text: Illumina Hiseq

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

text: RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES, CHINESE ACADEMY OF SCIENCES

text: public

characteristic: collection date

text: anaerobic sludge

characteristic: description

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: metagenome

characteristic: organism

text: resistome of anaerobic sludge

text: metagenome

text: Illumina Hiseq

text: wastewater/sludge


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIBE-IG

text: public

text: cattle

characteristic: common name

text: Simmental - female

text: Bos taurus

text: Bos taurus

text: Simmental


characteristic: External Id

text: UNIBE-IG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: cattle

text: Simmental - male

text: Bos taurus

text: Bos taurus

text: Simmental


text: UNIBE-IG

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: cattle

text: Holstein - female

text: Bos taurus

text: Bos taurus

text: Holstein


text: UNIBE-IG

text: public

characteristic: Submitter Id

text: cattle

text: Holstein - male

text: Bos taurus

text: Bos taurus

text: Holstein

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIBE-IG

text: public

text: cattle

text: Brown Swiss - female

text: Bos taurus

text: Bos taurus

text: Brown Swiss


text: UNIBE-IG

text: public

text: cattle

text: Brown Swiss - male

text: Bos taurus

text: Bos taurus

text: Brown Swiss


text: UNIBE-IG

text: public

text: cattle

text: Holstein

text: Bos taurus

text: Bos taurus

text: Holstein


text: UNIBE-IG

text: public

text: cattle

text: Piemontese - female

text: Bos taurus

text: Bos taurus

text: Piemontese


text: UNIBE-IG

text: public

text: cattle

text: Angler - male

text: Bos taurus

text: Bos taurus

text: Angler


text: UCSDMI

text: public

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Non-stricturing, non-penetrating (B1)

text: Colonic (L2)

text: no

text: human gut metagenome

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: CCD

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: missing: not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: human gut metagenome

characteristic: common name

characteristic: description

text: UC

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: UC

text: human gut metagenome

characteristic: organism

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title

text: Left sided (E2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: UC

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: UC

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint

text: Extensive (E3)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: human gut metagenome

characteristic: common name

characteristic: description

text: UC

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: UC

text: human gut metagenome

characteristic: organism

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title

text: Proctitis (E1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: UC

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: UC

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint

text: Left sided (E2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Stricturing (B2)

text: Ileal (L1)

text: yes

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Non-stricturing, non-penetrating (B1)

text: Ileocolonic (L3)

text: yes

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Stricturing (B2)

text: Ileal (L1)

text: no

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Non-stricturing, non-penetrating (B1)

text: Ileal and Upper-GI (L1+L4)

text: yes

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: human gut metagenome

characteristic: common name

characteristic: description

text: UC

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: UC

text: human gut metagenome

characteristic: organism

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title

text: Extensive (E3)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Stricturing (B2)

text: Ileal (L1)

text: yes

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: human gut metagenome

characteristic: common name

characteristic: description

text: UC

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: UC

text: human gut metagenome

characteristic: organism

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title

text: Left sided (E2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Non-stricturing, non-penetrating (B1)

text: Colonic (L2)

text: no

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: CCD

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Stricturing (B2)

text: Ileocolonic (L3)

text: yes

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: UC

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: UC

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint

text: Proctitis (E1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Stricturing (B2)

text: Ileocolonic (L3)

text: yes

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

characteristic: calprotectin

text: Stricturing (B2)

text: Ileocolonic (L3)

text: yes

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Stricturing (B2)

text: Ileocolonic (L3)

text: yes

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: yes

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: not collected

text: human gut metagenome

text: UC

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: UC

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint

text: Proctitis (E1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Stricturing (B2)

text: Ileal (L1)

text: yes

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

characteristic: calprotectin

text: Stricturing (B2)

text: Ileocolonic and Upper-GI (L3+L4)

text: yes

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: missing: not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: human gut metagenome

characteristic: common name

characteristic: description

text: UC

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: UC

text: human gut metagenome

characteristic: organism

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title

text: Left sided (E2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: UC

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: UC

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint

text: Proctitis (E1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Penetrating (B3)

text: Colonic (L2)

text: no

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: CCD

text: human gut metagenome

characteristic: organism

text: yes

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: UC

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: UC

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: human gut metagenome

characteristic: common name

characteristic: description

text: UC

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: UC

text: human gut metagenome

characteristic: organism

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title

text: Left sided (E2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Penetrating (B3)

text: Ileal (L1)

text: yes

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Stricturing (B2)

text: Ileal (L1)

text: yes

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: UC

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: UC

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint

text: Extensive (E3)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: human gut metagenome

characteristic: common name

characteristic: description

text: UC

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: UC

text: human gut metagenome

characteristic: organism

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title

text: Extensive (E3)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: UC

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: UC

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint

text: Left sided (E2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Stricturing (B2)

text: Ileal (L1)

text: yes

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Non-stricturing, non-penetrating (B1)

text: Ileocolonic and Upper-GI (L3+L4)

text: no

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Stricturing (B2)

text: Ileal (L1)

text: yes

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: yes

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Non-stricturing, non-penetrating (B1)

text: Colonic (L2)

text: no

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: CCD

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Colonic (L2)

text: human gut metagenome

characteristic: common name

characteristic: description

text: UC

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: CCD

text: human gut metagenome

characteristic: organism

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: male

text: IBD

text: LBNL

characteristic: title

text: Extensive (E3)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Penetrating (B3)

text: Ileocolonic (L3)

text: yes

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Non-stricturing, non-penetrating (B1)

text: Colonic (L2)

text: no

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: CCD

text: human gut metagenome

characteristic: organism

text: yes

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Non-stricturing, non-penetrating (B1)

text: Colonic (L2)

text: no

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: CCD

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: yes

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Non-stricturing, non-penetrating (B1)

text: Colonic (L2)

text: no

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: CCD

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human gut metagenome

text: UC

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: UC

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint

text: Proctitis (E1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Non-stricturing, non-penetrating (B1)

text: Ileal (L1)

text: no

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Penetrating (B3)

text: Ileocolonic and Upper-GI (L3+L4)

text: yes

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: missing: not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: calprotectin

text: Stricturing (B2)

text: Ileocolonic (L3)

text: yes

text: human gut metagenome

characteristic: common name

characteristic: description

text: CD

text: true

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

characteristic: experiment title

text: Sweden

characteristic: geo loc name

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: no

text: LBNL

text: false

text: LBNL

text: stool

text: human gut metagenome

text: female

text: IBD

text: LBNL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Stricturing (B2)

text: Ileal (L1)

text: yes

text: human gut metagenome

text: CD

text: true

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Sweden

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: ibd subtype

characteristic: lane

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: patientnumber

text: no

text: LBNL

text: false

text: LBNL

characteristic: sample center

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: IBD

characteristic: study

text: LBNL

characteristic: study center

characteristic: study id

characteristic: timepoint