text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: sampling site

text: sediment metagenome

characteristic: temperature

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2152


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

unit: DD

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF GOTHENBURG

characteristic: Submitter Id

unit: m

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

unit: practical salinity unit

characteristic: salinity

characteristic: sampling campaign

characteristic: sampling platform

text: sediment metagenome

unit: ºC

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2153

characteristic: title


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: sampling site

text: sediment metagenome

characteristic: temperature

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2154


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

characteristic: salinity

characteristic: sampling campaign

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2155


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: sampling platform

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2156

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

characteristic: sampling site

text: sediment metagenome

characteristic: temperature

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2157


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: salinity

characteristic: sampling campaign

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2158


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

characteristic: sampling platform

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2159

characteristic: title


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: sampling site

text: sediment metagenome

characteristic: temperature

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2160


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

characteristic: salinity

characteristic: sampling campaign

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2161


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: sampling platform

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2162

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

characteristic: sampling site

text: sediment metagenome

characteristic: temperature

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2163


BTHERMOSOX

text: public

text: BTHERMOSOX

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: collection date

text: Draft genome assembly of sulfur-oxidizer endosymbiont from Bathymodiolus thermophilus, Crab Spa

characteristic: description

text: sea

characteristic: environment (biome)

text: hydrothermal vent

characteristic: environment (feature)

text: gill tissue

characteristic: environment (material)

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Bathymodiolus thermophilus thioautotrophic gill symbiont

characteristic: organism

text: Comparative genomic insights into the roles of toxin-related genes in beneficial bacteria and theri acquisition by horizontal gene transfer

characteristic: project name

text: Illumina HiSeq

characteristic: sequencing method

text: Genome sequencing of the sulfur-oxidizer symbiont of Bathymodiolus thermophilus


wt LV

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: wt LV

tag: Namespace:NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: wild type

text: Mus musculus

text: Mus musculus

text: heart

characteristic: tissue type

text: non-infarcted left ventricle 3 days post myocardial infarction

characteristic: title

type: has member


N3 LV

text: NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY

text: public

text: N3 LV

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: heart


BPUTEOSOX

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

text: public

text: BPUTEOSOX

characteristic: collection date

text: Draft genome assembly of sulfur-oxidizer endosymbiont from Bathymodiolus puteoserpentis, Logatchev

text: sea

characteristic: environment (biome)

text: hydrothermal vent

characteristic: environment (feature)

text: gill tissue

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: thiotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev)

characteristic: organism

text: Illumina HiSeq

text: Genome sequencing of the sulfur-oxidizer symbiont of Bathymodiolus puteoserpentis, Logatchev


text: Plasmodium cf. malariae

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Plasmodium cf. malariae

text: Plasmodium cf. malariae

text: Plasmodium malariae-like

characteristic: sample description

text: Plasmodium cf. malariae

characteristic: strain


text: Plasmodium ovale curtisi

text: SC

text: public

characteristic: Submitter Id

text: Plasmodium ovale curtisi

characteristic: common name

text: Plasmodium ovale curtisi

text: Plasmodium ovale curtisi


text: Plasmodium ovale wallikeri

text: SC

text: public

text: Plasmodium ovale wallikeri

text: Plasmodium ovale wallikeri

text: Plasmodium ovale wallikeri


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, ring stage, biological replicate 2

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

characteristic: title


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

characteristic: organism

text: RNA extracted from purified parasites from C57 BL/6 mice blood, ring stage, biological replicate 1

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

characteristic: ArrayExpress-Species

text: Plasmodium chabaudi chabaudi AS

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, ring and trophozoite stage, biological replicate 2

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, trphozoite stage, biological replicate 1

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, trphozoite stage, biological replicate 2

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, schizont stage, biological replicate 2

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, trophozoite stage, biological replicate 2

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

characteristic: External Id

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, schizont stage, biological replicate 1

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

text: SC

characteristic: INSDC center name

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, ring stage, biological replicate 3

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

text: SC

characteristic: INSDC first public

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, ring and trophozoite stage, biological replicate 1

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

text: SC

characteristic: INSDC last update

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, schizont stage, biological replicate 3

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

text: SC

text: public

characteristic: INSDC status

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, ring and trophozoite stage, biological replicate 3

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

text: SC

text: public

characteristic: SRA accession

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, trophozoite stage, biological replicate 3

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, rindg stage, biological replicate 3

characteristic: sample description

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS


text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

text: SC

text: public

text: Plasmodium chabaudi

text: Plasmodium chabaudi

text: RNA extracted from purified parasites from C57 BL/6 mice blood, trophozoite stage, biological replicate 1

text: Plasmodium chabaudi

text: Plasmodium chabaudi chabaudi AS

characteristic: strain


BCLUESOX

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

text: public

text: BCLUESOX

characteristic: Submitter Id

characteristic: collection date

text: Draft genome assembly of sulfur-oxidizer endosymbiont from Bathymodiolus sp., 5° SMAR, Clueless

characteristic: description

text: sea

characteristic: environment (biome)

text: hydrothermal vent

characteristic: environment (feature)

text: gill tissue

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: bacterium endosymbiont of Bathymodiolus sp. 5 South

text: Comparative genomic insights into the roles of toxin-related genes in beneficial bacteria and theri acquisition by horizontal gene transfer

characteristic: project name

text: Illumina HiSeq

characteristic: sequencing method

text: Genome sequencing of the sulfur-oxidizer symbiont of Bathymodiolus sp. 5° SMAR, Clueless


Lactobacillus rennini ACA-DC 5651

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Agricultural University of Athens

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lactobacillus rennini ACA-DC 5651

tag: Namespace:Agricultural University of Athens

text: Greek Kopanisti cheese

characteristic: isolation source

text: Lactobacillus rennini

characteristic: organism

text: Lactobacillus rennini

text: ACA-DC 565

text: Complete genome sequence of Lactobacillus rennini ACA-DC 565

characteristic: title


text: Enterococcus faecalis

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: Submitter Id

text: Enterococcus faecalis

characteristic: common name

text: Enterococcus faecalis

text: Enterococcus faecalis


text: QLD Health

text: public

tag: Namespace:QLD Health

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae 35B variants


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: dfdong

text: public

text: house mouse

text: IFNG KO

characteristic: description

text: Mus musculus

text: Mus musculus

text: IFNG KO


text: dfdong

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: IFNG WT

text: Mus musculus

text: Mus musculus

text: IFNG WT


text: dfdong

text: public

characteristic: Submitter Id

text: house mouse

text: WT

text: Mus musculus

characteristic: organism

text: Mus musculus

text: IgG

characteristic: title


text: dfdong

text: public

text: house mouse

characteristic: common name

text: WT

text: Mus musculus

text: Mus musculus

text: Anti-IFNg


text: dfdong

text: public

text: house mouse

text: IFNgKO

text: Mus musculus

text: Mus musculus

text: IFNgKO breed Akk-; Day 0


text: dfdong

text: public

text: house mouse

text: IFNgKO

text: Mus musculus

text: Mus musculus

text: IFNgKO breed Akk-;NoColonizeAkk; Day 7


text: dfdong

text: public

text: house mouse

text: IFNgKO

text: Mus musculus

text: Mus musculus

text: IFNgKO breed Akk-;colonizeAkk; Day 7


text: dfdong

text: public

text: house mouse

text: IFNgKO

text: Mus musculus

text: Mus musculus

text: IFNgKO breed Akk-;NoColonizeAkk;post-rIFNg injection; Day21


text: dfdong

text: public

text: house mouse

text: IFNgKO

text: Mus musculus

text: Mus musculus

text: IFNgKO native Akk+; day 0


text: public

tag: Namespace:Gerontology Research Center, University of Jyvaskyla

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Serum (450ul) extracellular vesicles were extracted with Exoquick Exosome Precipitation Solution according to manufacturer’s protocol (#EXOQ5A-1, System Biosciences). The size of the vesicles were confirmed with Electron microscopy Total exosome RNA was extracted using Trisure reagent (Bioline) according to manufacturers’ instructions with slight modifications 7 µl of synthetic cel-miR-39 miR mimic (1,6 x 108 copies/µl, Qiagen cat. no 219610) was added to each sample to serve as a spike-in control for monitoring the miR purification and amplification. Chloroform was used for the phase separation and 1 µl of nuclease free glycogen (Glycogen RNA Grade, 20 mg/ml, Fermentas) for enhancing the RNA precipitation The small RNA libraries were prepared with TruSeq Small RNA Sample Preparation Kit (Illumina, USA) with multiplexing adapters following the TruSeq Small RNA Sample Preparation Kit user guide (Rev. E). cDNA library fragments between 145 and 160 bp corresponding the miR libraries were excised from the gel (6%), purified and eluted.

text: postmenopausal

characteristic: developmental stage

characteristic: family id

text: Homo sapiens

text: Homo sapiens

text: blood serum

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Gerontology Research Center, University of Jyvaskyla

text: public

text: ArrayExpress

text: human

text: premenopausal

text: Homo sapiens

text: Homo sapiens

text: blood serum

text: Homo sapiens

text: female


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: description

text: postmenopausal

text: Homo sapiens

text: Homo sapiens

text: blood serum

text: Homo sapiens

text: female


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:CUBE Computation Systems Biology Vienna 1090 Austria

unit: year

characteristic: age

text: ArrayExpress

text: date palm

text: Protocols: 2h ABA teated and control pinneates from data palm leaves were used. ABA was fed through the petiole and was applied with a final concentration of 25µM in the leaves’ water reservoir as described (Bemm et al. (2016). Genome Res. 26(6):812-825) NEBNext Ultra™ RNA Library Prep protocol (New England Biolabs, Ipswich, MA, USA)

text: LP.05 five leaves visible stage

text: 2 hour with CO2-free air in darkness, then 4 hour at light

characteristic: growth condition

text: Phoenix dactylifera

text: Phoenix dactylifera

text: pinnate leaf

text: Phoenix dactylifera


text: CUBE Computation Systems Biology Vienna 1090 Austria

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: date palm

characteristic: common name

text: LP.05 five leaves visible stage

text: Phoenix dactylifera

characteristic: organism

text: Phoenix dactylifera

text: pinnate leaf

text: Phoenix dactylifera

characteristic: title


text: Vancomycin Resistant Enterococcus

characteristic: ArrayExpress-Phenotype

text: Enterococcus faecium

characteristic: ArrayExpress-Species

text: SC

text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Limnological Station

text: public

tag: Namespace:Limnological Station

text: unidentified bacterium

text: unidentified bacterium

text: Bacteria associated with Synecchoccocus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: UNIBO

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: meat

characteristic: isolation source non-host-associated

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium monophasic variant S. 4,[5],12:i:-

characteristic: serovar

text: monophasic Salmonella Typhimurium from food and animals


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: UNIBO

text: No

text: Italy

text: Sus domesticus

characteristic: host scientific name

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: UNIBO

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

text: Meleagris gallopavo

text: Yes

text: Salmonella enterica

text: Salmonella enterica


text: SSI

text: public

text: UNIBO

text: No

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Canis familiaris

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

characteristic: serovar


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: UNIBO

text: No

text: Italy

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

text: public

text: UNIBO

text: No

text: Italy

text: Coturnix coturnix

characteristic: host scientific name

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

characteristic: title


characteristic: External Id

text: SSI

text: public

text: UNIBO

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Anser anser domesticus

text: Yes

text: Salmonella enterica

text: Salmonella enterica


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: UNIBO

text: No

text: Italy

characteristic: geographic location (longitude)

text: Gallus gallus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DNASense

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SRB initial

characteristic: description

text: metagenome

text: metagenome

text: SRB initial


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DNASense

text: public

text: SRB SMZ

text: metagenome

characteristic: organism

text: metagenome

text: SRB SMZ

characteristic: title


text: DNASense

characteristic: INSDC center name

text: public

text: SRB Cipro

text: metagenome

text: metagenome

text: SRB Cipro


text: DNASense

characteristic: INSDC first public

text: public

text: SRB Estradiol

text: metagenome

text: metagenome

text: SRB Estradiol


text: DNASense

text: public

text: SRB Cipro without carbon source

text: metagenome

text: metagenome

text: SRB Cipro without carbon source


text: DNASense

text: public

text: NRB initial

text: metagenome

text: metagenome

text: NRB initial


text: DNASense

text: public

text: NRB SMZ

text: metagenome

text: metagenome

text: NRB SMZ


text: DNASense

text: public

text: NRB Cipro

text: metagenome

text: metagenome

text: NRB Cipro


text: DNASense

text: public

text: NRB Estradiol

text: metagenome

text: metagenome

text: NRB Estradiol


text: DNASense

text: public

text: NRB Cipro without carbon source

text: metagenome

text: metagenome

text: NRB Cipro without carbon source


text: DNASense

text: public

text: NRB estradiol without carbon source

text: metagenome

text: metagenome

text: NRB estradiol without carbon source


text: Limnological Station

text: public

text: unidentified bacterium

text: unidentified bacterium

text: Bacteria associated with Synecchoccocus


text: public

tag: Namespace:Ludwig Cancer Research and Institute of medical biochemistry and microbiology, SciLife lab, Uppsala University, Sweden.

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Human triple negative breast cancer cells Hs578T were cultured in DMEM supplemented with 10% fetal bovine serum in the presence of 1% penicillin-streptomycin Hs578T cells were transfected with CRISPR Cas9 and HDR plasmids obtained from Santa Cruz Biotech. targeting the human Snai1 (Santa Cruz biotech. , sc-400244 and sc-400244-HDR) genes. Two days post-transfection, cells were selected with puromycin and single cell colonies were picked and cultured. The obtained clones were then validated using western blotting and the deleted sequences were validated using conventional PCR amplification and sequencing of DNA fragments spanning the sites of guide sequences employed in the CRISPR Cas9 vector system. The TRIzol extraction protocol was used to extract total RNA from both wild type clones and knockout clones using TRIzol reagent from Ambion/Life Technologies and based on the manufacturer’s protocol. Total RNA for Ampliseq was extracted with 3 biological replicates and 3 technical replicates as described above. Fifty ng of RNA was reverse transcribed to cDNA using the Ion AmpliSeq™ Transcriptome Human Gene Expression Kit Preparation protocol (Revision A.0, Life Technologies). The acquired cDNA was amplified using Ion AmpliSeq™ Transcriptome Human Gene Expression core panel (Life Technologies) and the primer sequences were then partially digested. Then, DNA adaptors (Ion P1 Adaptor and Ion Xpress™ Barcode Adaptor, Life Technologies) were ligated to the amplicons. Adaptor ligated amplicons were purified using the Agencourt® AMPure® XP reagent (Beckman Coulter) and eluted in amplification mix (Platinum® PCR SuperMix High Fidelity and Library Amplification Primer Mix, Life Technologies) and amplified. Size-selection and purification was conducted using Agencourt® AMPure® XP reagent (Beckman Coulter). The amplicons were quantified using the Fragment AnalyzerTM instrument (Advanced Analytical Technologies, INC.) with DNF-474 High Sensitivity NGS Fragment Analysis Kit (Advanced Analytical Technologies, INC.). Samples were then pooled, six or less per pool, followed by emulsion PCR on either the Ion OneTouch™ 2 System using the Ion PI™ Hi-Q™ OT2 Kit (Life Technologies), or on the Ion Chef™ System using the Ion PI Hi-Q Chef Kit (Life Technologies). The pooled samples were loaded on Ion PI™ v3 chips and sequenced on the Ion Proton™ System using the Ion PI™ Hi-Q Sequencing 200 Kit chemistry (200 bp read length, Life Technologies). Mean read length was 114 bp. Acquired reads were then aligned to the hg19 AmpliSeq Transcriptome ERCC v1 using the Torrent Mapping and Alignment Program (TMAP) with default settings. Differentially expressed genes were called requiring a mean log2-fold change over the replicates of 2 and a q-value < 0.05 (one-sided t-test with False Discovery Rate (FDR) adjustment).

text: breast carcinoma

characteristic: disease

text: gene knock out

characteristic: genetic modification

text: Snai1 knockout

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Ludwig Cancer Research and Institute of medical biochemistry and microbiology, SciLife lab, Uppsala University, Sweden.

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: epithelial cell

text: human

text: breast carcinoma

text: gene knock out

text: Snai1 knockout

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


E-MTAB-5242:Hs S Chip minus

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-5242:Hs S Chip minus

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

text: Protocols: Human triple negative breast cancer cells Hs578T were cultured in DMEM supplemented with 10% fetal bovine serum in the presence of 1% penicillin-streptomycin. Cells were starved for 18 h in DMEM with 0% fetal bovine serum and stimulated with TGFβ1 (5 ng/ml final concentration). Human triple negative breast cancer cells Hs578T were cultured in DMEM supplemented with 10% fetal bovine serum in the presence of 1% penicillin-streptomycin. Cells were starved for 18 h in DMEM with 0% fetal bovine serum and stimulated with TGFβ1 (5 ng/ml final concentration). Cells were cultured using standard conditions and then cells were fixed with 2% formaldehyde for 10 min at 37°C. Immediately, formaldehyde was removed and cells were washed with ice-cold PBS twice. Cells were scraped in PBS and spun down at 4,000 rpm for 5 min Supernatant was removed and cells were lysed with SDS lysis buffer (1% SDS, 10 mM EDTA, 50 mM Tris-HCl pH 8.1) with added protease inhibitor cocktail (Roche diagnostics) for 20 min on ice. Lysed cells were then sonicated for obtaining an average fragment size of 250 bp. Input of about 10 % was aliquoted and frozen at -20°C. The remaining lysate was then diluted 10 times with ChIP dilution buffer (0.01% SDS, 1.1% Triton-X 100, 1.2 mM EDTA, 16.7 mM Tris-HCl pH 8.1, 167 mM NaCl) with protease inhibitors, and proceeded for immnoprecipitation using anti-Snai1 (Cell Signaling Technologies, C15D3) antibodies or a rabbit antiserum, overnight at 4°C. Protein A dynabeads (Novex, 10001D) were added to this lysate and incubated for 2 h at 4°C. Beads were then washed once with low salt buffer (0.1% SDS, 1% Triton-X 100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 150 mM NaCl), once with high salt buffer (0.1% SDS, 1% Triton-X 100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 500 mM NaCl), once with lithium chloride wash buffer (0.25M LiCl, 1% IGEPAL, 1% deoxycholic acid, 1 mM EDTA, 10 mM Tris-HCl pH 8.1), and then twice with TE buffer (10 mM Tris-HCl pH 8.0, 1 mM EDTA pH 8.0). After these series of washing steps, the beads and the Input samples were then re-suspended in elution buffer (1% SDS, 1 mM NaHCO3) and mixed up and down for 30 min and left for de-crosslinking in the presence of 0.2 mM NaCl at 65°C overnight. The eluted chromatin was then subjected to proteinase K digestion followed by phenol-chloroform extraction. The respective input was then used to normalize the DNA in each sample that was subjected to chromatin immunoprecipitation. The extracted DNA was then subjected to either PCR quantification or sequencing experiments. ChIP DNA was obtained with 4 biological and technical replicates and pooled for sequencing. The quality of the ChIP DNA obtained was analyzed with a bioanalyzer. The DNA obtained from Input and ChIP were sheared by sonication using the Covaris S2 instrument (Covaris, Inc.). ChIP-seq libraries were constructed from the sheared samples using AB Library Builder System (Life Technologies), followed by amplification and ‘‘Wildfire” conversion (massive parallel monoclonal template generation, www.thermofisher.com), according to the manufacturer’s protocols. Sequencing was performed at 75 bp read length on the SOLiD 5500W system (Life Technologies). Library preparation was performed using library kit (5500 SOLiD Library Builder Fragment Core Kit + 5500W Conversion Primer Kit), after which sequencing was performed using the sequencing machine (SOLiD 5500W) at sequencing unit (SOLiD5500W FlowChip).

characteristic: description

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hs S Chip minus


E-MTAB-5242:Hs S Chip plus

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5242:Hs S Chip plus

text: ArrayExpress

text: epithelial cell

text: human

text: breast carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Hs S Chip plus

characteristic: title


BTURTLESOX

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: INSDC first public

text: public

text: BTURTLESOX

characteristic: collection date

text: Draft genome assembly of sulfur-oxidizer endosymbiont from Bathymodiolus sp. 5° SMAR, Turtle Pits

text: sea

characteristic: environment (biome)

text: hydrothermal vent

characteristic: environment (feature)

text: gill tissue

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: project name

text: Illumina HiSeq

characteristic: sequencing method

text: Genome sequencing of the sulfur-oxidizer symbiont of Bathymodiolus sp. 5° SMAR, Turtle Pits


BHECKSOX

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BHECKSOX

characteristic: Submitter Id

text: Draft genome assembly of sulfur-oxidizer endosymbiont from Bathymodiolus heckerae, Chapopote

characteristic: description

text: sea

text: hydrothermal vent

text: gill tissue

text: Mexico

text: host-associated

text: metagenome

text: Bathymodiolus heckerae thiotrophic gill symbiont

text: Comparative genomic insights into the roles of toxin-related genes in beneficial bacteria and theri acquisition by horizontal gene transfer

text: Illumina HiSeq

text: Genome sequencing of the sulfur-oxidizer symbiont of Bathymodiolus heckerae


BBROOKSOX

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BBROOKSOX

characteristic: collection date

text: Draft genome assembly of sulfur-oxidizer endosymbiont from Bathymodiolus brooksi, Chapopote

text: sea

characteristic: environment (biome)

text: hydrothermal vent

characteristic: environment (feature)

text: gill tissue

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Bathymodiolus brooksi thiotrophic gill symbiont

characteristic: organism

text: Illumina HiSeq

text: Genome sequencing of the sulfur-oxidizer symbiont of Bathymodiolus brooksi

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Institute of Medical Microbiology and Hospital Epidemiology

text: Reisolate of Helicobacter pylori str. BCM-300 obtained after experimental human infection

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE93/10


BPUTEOMOX

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: BPUTEOMOX

text: Draft genome assembly of methane-oxidizer endosymbiont from Bathymodiolus puteoserpentis, Logatchev, Irina 2

text: sea

text: hydrothermal vent

text: gill tissue

text: Atlantic Ocean

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: methanotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev)

text: MOX symbiont genome

characteristic: project name

text: Illumina HiSeq

characteristic: sequencing method

text: Genome sequencing of the methane-oxidizer symbiont of Bathymodiolus puteoserpentis, Logatchev


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUTE OF SOIL SCIENCE, CHINESE ACADEMY OF SCIENCES

characteristic: Submitter Id

characteristic: collection date

text: Drylands

characteristic: environment (biome)

text: alpine deserts

text: soil

text: China

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil fungal diversity in drylands

text: soil metagenome

text: Illumina MiSeq

text: soil

characteristic: soil environmental package

text: Ngarifungi


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF SOIL SCIENCE, CHINESE ACADEMY OF SCIENCES

text: public

text: Drylands

text: alpine deserts

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil fungal diversity in drylands

text: soil metagenome

text: Illumina MiSeq

text: soil

text: Ngarifungi

characteristic: title


text: Institute of Medical Microbiology and Hospital Epidemiology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: description

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE101/09


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE132/09


characteristic: ENA-CHECKLIST

text: public

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE134/09


characteristic: ENA-FIRST-PUBLIC

text: public

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE136/09


characteristic: ENA-LAST-UPDATE

text: public

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE141/09


characteristic: External Id

text: public

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE142/09


text: public

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE143/09


text: public

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE147/09


text: public

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE170/09


text: public

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE171/09


text: public

text: Reisolate of Helicobacter pylori str. BCM-300 obtained after experimental human infection

text: Helicobacter pylori

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE178/09


text: UPENN

text: public

text: ArrayExpress

characteristic: broker name

text: differentiated villus cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Lgr5-EGFP-IRES-CreERt2 mice used to isolate Lgr5+ intestinal stem cell (GFP+ cell sorted by FACS), Villus differentiated cells were collected by gentle scraping Using NEBNext® DNA Library Prep Master Mix Set for Illumina®

text: adult

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

characteristic: organism part

text: Mus musculus

characteristic: strain


text: UPENN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Lgr5 positive stem cell

text: house mouse

text: adult

text: Mus musculus

characteristic: organism

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

characteristic: title


text: URMITE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ezakiella sp. Marseille-P2951

text: Ezakiella sp. Marseille-P2951

text: Ezakiella massiliensis genome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

characteristic: Submitter Id

text: Olsenella sp. Marseille-P2300

text: Olsenella sp. Marseille-P2300

text: Olsenella timonensis genome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Limnological Station

text: public

text: unidentified bacterium

text: unidentified bacterium

text: Bacteria associated with Synecchoccocus


text: Faculty of medecine and pharmacy RABAT

text: public

tag: Namespace:Faculty of medecine and pharmacy RABAT

characteristic: collection date

text: Whole-Genome Shotgun Sequence of MDR Mycobacterium Tuberculosis MTB2_M isololated from Morocco

characteristic: description

text: Morocco

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: genomic dna

characteristic: isolate

text: sputum

characteristic: isolation source

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Whole-Genome Shotgun Sequence of MDR Mycobacterium Tuberculosis MTB13_M isololated from Morocco


text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Blautia sp. Marseille-P3087

characteristic: organism

text: Blautia sp. Marseille-P3087

characteristic: strain

text: Blautia ihumii genome


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Division of Microbial Ecology University of Vienna

text: Healthy ASF8 gnotobiotic mouse

text: Yes

characteristic: environmental sample

text: Mus musculus

text: Mucispirillum schaedleri ASF457

text: Mucispirillum schaedleri ASF457

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UBT

text: public

characteristic: Submitter Id

text: Forest

characteristic: environment (biome)

text: Steigerwald

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (elevation)

text: 49.52 N

characteristic: geographic location (latitude)

text: 10.28 E

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG, GACTACHVGGGTATCTAATCC

characteristic: pcr primers

characteristic: ph

text: Methanol- and Chloromethane-utilizing microorganisms in forest soil

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Actinomyces sp. Marseille-P2985

characteristic: organism

text: Actinomyces sp. Marseille-P2985

characteristic: strain

text: Actinomyces pacaensis genome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

text: public

characteristic: Submitter Id

text: Blautia sp. Marseille-P3201T

text: Blautia sp. Marseille-P3201T

text: Blautia caccae genome


text: Division of Microbial Ecology University of Vienna

text: public

text: Healthy ASF8 gnotobiotic mouse

characteristic: description

text: Yes

characteristic: environmental sample

text: Mus musculus

characteristic: host scientific name

text: Mucispirillum schaedleri ASF457

text: Mucispirillum schaedleri ASF457


text: URMITE

text: public

text: Collinsella sp. Marseille-P3245

text: Collinsella sp. Marseille-P3245

text: Collinsella phocaeensis genome


text: URMITE

text: public

text: Gemella sp. Marseille-P3249

text: Gemella sp. Marseille-P3249

text: Gemella massiliensis genome


text: Pluripotent cell line

characteristic: ArrayExpress-CellType

text: EPSCM

characteristic: ArrayExpress-GrowthCondition

characteristic: ArrayExpress-Immunoprecipitate

text: Normal

characteristic: ArrayExpress-Phenotype

text: Mus Musculus

characteristic: ArrayExpress-Species

text: EPSCM

characteristic: ArrayExpress-Treatment

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Pluripotent cell line

characteristic: sample description

text: Mus musculus


characteristic: ENA-CHECKLIST

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Holdemania sp. Marseille-P2844

characteristic: organism

text: Holdemania sp. Marseille-P2844

characteristic: strain

text: Holdemania timonensis genome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Key Laboratory of Environmental and Applied Microbiology, CAS

characteristic: Submitter Id

characteristic: collection date

text: pika

characteristic: environment (biome)

characteristic: environment (feature)

text: stomach

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

characteristic: investigation type

text: gut metagenome

characteristic: project name

text: gut metagenome

text: MiSeq

characteristic: sequencing method

text: Stomach

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Key Laboratory of Environmental and Applied Microbiology, CAS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pika

text: stomach

text: host-associated

text: China

text: human-associated

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: gut metagenome

text: MiSeq

text: Stomach


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: DSS-treated ASF8 gnotobiotic mouse

characteristic: description

text: Yes

characteristic: environmental sample

text: Mus musculus

characteristic: host scientific name

text: Mucispirillum schaedleri ASF457

text: Mucispirillum schaedleri ASF457


text: human metagenome

characteristic: ArrayExpress-Species

text: SC

text: public

text: human metagenome

characteristic: common name

text: human metagenome

text: human metagenome


text: URMITE

text: public

text: Clostridium sp. Marseille-P3244

text: Clostridium sp. Marseille-P3244

characteristic: strain

text: Lachnoclostridium caccae genome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

text: Eubacterium sp. Marseille-P3177

text: Eubacterium sp. Marseille-P3177

text: Lachnoclostridium phoceense genome


text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Olsenella sp. Marseille-P3237

text: Olsenella sp. Marseille-P3237

text: Libanus massiliensis genome


text: URMITE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Candidatus Stoquefichus sp. SN16

text: Candidatus Stoquefichus sp. SN16

text: Massilimicrobiota timonensis genome


text: URMITE

text: public

characteristic: SRA accession

text: Levyella sp. Marseille-P3170

characteristic: organism

text: Levyella sp. Marseille-P3170

text: Ndongobacter massiliensis genome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

text: public

text: Olsenella sp. Marseille-P2936

text: Olsenella sp. Marseille-P2936

text: Olsenella phocaeensis genome


text: URMITE

text: public

characteristic: Submitter Id

text: Peptoniphilaceae bacterium FC2

text: Peptoniphilaceae bacterium FC2

text: Urinicoccus massiliensis genome


text: URMITE

text: public

text: Porphyromonadaceae bacterium FC4

text: Porphyromonadaceae bacterium FC4

text: Urininfantis massiliensis genome


text: URMITE

text: public

text: Tissierella sp. Marseille-P2918

text: Tissierella sp. Marseille-P2918

text: Urmitella timonensis genome


cycHFD

text: WEIZMANN INSTITUTE OF SCIENCE

text: public

text: cycHFD

tag: Namespace:WEIZMANN INSTITUTE OF SCIENCE

text: house mouse

text: Mus musculus

text: Mus musculus


text: WEIZMANN INSTITUTE OF SCIENCE

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


cycHFDCelastrol

text: WEIZMANN INSTITUTE OF SCIENCE

text: public

text: cycHFDCelastrol

text: house mouse

text: Mus musculus

text: Mus musculus


cyclingHFD

text: WEIZMANN INSTITUTE OF SCIENCE

text: public

text: cyclingHFD

text: house mouse

text: Mus musculus

text: Mus musculus


text: SSI

text: public

text: ITA

text: UNIBO

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

characteristic: host

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: dairy products

characteristic: isolation source non-host-associated

text: dairy products

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

text: E. coli

type: AMR curated data - CABBAGE

value: ciprofloxacin

value: CLSI

value: broth dilution

value: mg/L

value: susceptible

value: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITA

characteristic: SRA accession

text: UNIBO

text: No

text: Escherichia

text: Italy

text: other (non-clinical isolate)

text: not provided

characteristic: host health state

text: Bos Taurus

characteristic: host scientific name

text: Yes

text: cattle

characteristic: isolation source host associated

text: cattle

text: Escherichia coli

text: Escherichia coli

text: E. coli

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: ITA

characteristic: Submitter Id

text: UNIBO

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: No

text: nbot applicable

text: dairy products

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: E. coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITA

text: UNIBO

text: No

text: Escherichia

text: Italy

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

text: E. coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

characteristic: collected by

text: No

text: France

text: No

text: Pork

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey

characteristic: title


text: SSI

text: public

text: ANSES

characteristic: collection date

text: No

characteristic: environmental sample

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Sheep Goat

characteristic: isolation source host associated

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ANSES

text: Yes

text: France

text: No

characteristic: is the sequenced pathogen host associated?

text: Soil

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

characteristic: collected by

text: No

text: France

text: Yes

characteristic: isolate

text: Duck

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

characteristic: serovar

text: Survey


text: SSI

text: public

text: ANSES

characteristic: collection date

text: No

characteristic: environmental sample

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: Dairy products

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ANSES

text: No

text: France

text: No

text: Pork

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

text: Survey


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

text: Yes

text: France

text: No

characteristic: is the sequenced pathogen host associated?

text: Soil

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

text: Survey


text: SSI

text: public

text: ANSES

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: France

characteristic: geographic location (country and/or sea)

text: No

characteristic: isolate

text: Pork

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

characteristic: serovar

text: Outbreak investigation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: DSS-treated ASF8 gnotobiotic mouse

characteristic: description

text: Yes

text: Mus musculus

characteristic: host scientific name

text: Mucispirillum schaedleri ASF457

text: Mucispirillum schaedleri ASF457

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ANSES

text: No

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: Pork

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S.TYPHIMURIUM

text: Outbreak investigation


characteristic: External Id

text: SSI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: France

text: No

characteristic: is the sequenced pathogen host associated?

text: Pork

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

text: Outbreak investigation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: ANSES

text: No

text: France

characteristic: geographic location (country and/or sea)

text: No

characteristic: isolate

text: Feed

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

characteristic: serovar

text: Survey

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ANSES

text: No

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: Chicken meat

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S. 4,5,12:i:-

text: Survey


characteristic: External Id

text: SSI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

text: No

text: France

text: No

text: Pork

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S. I 4,12:i:-

text: Outbreak investigation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: ANSES

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: France

text: No

characteristic: is the sequenced pathogen host associated?

text: Prepared dishes

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

text: public

text: ANSES

text: No

text: France

characteristic: geographic location (country and/or sea)

text: Yes

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

characteristic: serovar

text: Survey

characteristic: title


characteristic: External Id

text: SSI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ANSES

text: No

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: Pork

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Monitoring program


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

characteristic: Submitter Id

text: ANSES

characteristic: collected by

characteristic: collection date

text: Yes

text: France

text: No

text: Broilers farm env.

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

text: Survey


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

text: public

text: ANSES

text: No

characteristic: environmental sample

text: France

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pork

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey


characteristic: External Id

text: SSI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ANSES

text: No

text: France

text: Yes

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

characteristic: serovar

text: Survey

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

characteristic: collected by

text: No

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Pigs

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

text: Other


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

text: public

text: ANSES

characteristic: collection date

text: Yes

characteristic: environmental sample

text: France

characteristic: geographic location (country and/or sea)

text: No

text: Layers farm env.

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S.TYPHIMURIUM

text: Survey


characteristic: External Id

text: SSI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ANSES

text: No

text: France

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Cattle

characteristic: isolation source host associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

characteristic: collected by

text: No

text: France

text: No

text: Pork

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

characteristic: serovar

text: Survey

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

text: public

text: ANSES

characteristic: collection date

text: No

characteristic: environmental sample

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Fin fish

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

text: Outbreak investigation


characteristic: External Id

text: SSI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ANSES

text: No

text: France

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Cattle

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S. Typhimurium

text: Survey


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

text: Yes

text: France

text: No

characteristic: isolate

text: Water

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Monitoring program


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

text: public

text: ANSES

characteristic: collected by

characteristic: collection date

text: Yes

text: France

text: No

text: Water

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

characteristic: serovar

text: Survey

characteristic: title


characteristic: External Id

text: SSI

characteristic: INSDC first public

text: public

text: ANSES

text: No

characteristic: environmental sample

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: Beef

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

text: Survey


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ANSES

text: No

text: France

text: No

characteristic: is the sequenced pathogen host associated?

text: Duck meat

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

text: Yes

text: France

text: No

characteristic: isolate

text: Water

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

text: Survey


characteristic: External Id

text: SSI

characteristic: INSDC first public

text: public

text: ANSES

characteristic: collected by

characteristic: collection date

text: No

text: France

text: No

text: Pork

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

characteristic: serovar

text: Outbreak investigation

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: ANSES

text: No

characteristic: environmental sample

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: Turkey meat

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ANSES

text: No

text: France

text: No

characteristic: is the sequenced pathogen host associated?

text: Chicken meat

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey


characteristic: External Id

text: SSI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

text: No

text: France

text: No

characteristic: isolate

text: Veal meat

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

text: Survey


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: ANSES

characteristic: collected by

characteristic: collection date

text: No

text: France

text: No

text: Pork

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,5,12:i:-

characteristic: serovar

text: Survey

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: ASF4 mouse cecum

characteristic: description

text: Yes

characteristic: environmental sample

text: Mus musculus

characteristic: host scientific name

text: Mucispirillum schaedleri ASF457

text: Mucispirillum schaedleri ASF457


characteristic: External Id

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ANSES

text: No

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

characteristic: is the sequenced pathogen host associated?

text: Eggs

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: S.TYPHIMURIUM

text: Outbreak investigation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ANSES

characteristic: collected by

text: No

text: France

text: Yes

characteristic: isolate

text: Gallus gallus

characteristic: isolation source host associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.TYPHIMURIUM

text: Outbreak investigation


characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

text: public

text: ANSES

characteristic: collection date

text: Yes

characteristic: environmental sample

text: France

text: No

text: Water

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S. Typhimurium

characteristic: serovar

text: Survey

characteristic: title


characteristic: External Id

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ANSES

text: No

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

characteristic: is the sequenced pathogen host associated?

text: Turkey meat

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: S.I 4,12:i:-

text: Survey


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Functional Genomics Genter Zurich

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:Functional Genomics Genter Zurich

characteristic: Submitter Id

text: Switzerland

text: healthy

characteristic: host health state

text: Sus

characteristic: host scientific name

text: porcine rectal swab

characteristic: isolation source

text: Chlamydia suis

characteristic: organism

text: Chlamydia suis


tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

tag: Namespace:Federal Research Clinical Centre of Physical-Chemical Medicine

characteristic: collection date

text: human microbiome

characteristic: environment (biome)

text: intestine environment

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Russia

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Gut metagenomes of alcoholics

characteristic: project name

text: metagenome

text: SOLiD

characteristic: sequencing method

text: Gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Federal Research Clinical Centre of Physical-Chemical Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human microbiome

text: intestine environment

text: feces

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

text: metagenome

text: Gut metagenomes of alcoholics

text: metagenome

text: SOLiD

text: Gut metagenome


characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ASF4 mouse colon

characteristic: description

text: Yes

characteristic: environmental sample

text: Mus musculus

characteristic: host scientific name

text: Mucispirillum schaedleri ASF457

characteristic: organism

text: Mucispirillum schaedleri ASF457


text: Mycobacterium abscessus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Mycobacterium abscessus

characteristic: common name

text: Mycobacterium abscessus

text: Mycobacterium abscessus

characteristic: title


text: human metagenome

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human metagenome

text: human metagenome

text: human metagenome


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Retroviral Immunology The Francis Crick Institute

text: ArrayExpress

characteristic: broker name

text: peritoneal macrophage

characteristic: cell type

text: house mouse

text: Protocols: Duplicate cultures of peritoneal macrophages from C57BL/6 mice were stimulated overnight with 10 µM concentration of either peptide or left unstimulated. Libraries were constructed by GENEWIZ, Inc., South Plainfield, NJ, USA

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: 1749 Immunosuppressive Domain

characteristic: stimulus

characteristic: strain


characteristic: ENA-LAST-UPDATE

text: Retroviral Immunology The Francis Crick Institute

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

text: peritoneal macrophage

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: 1749 Immunosuppressive Domain


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: peritoneal macrophage

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: 1749 Immunosuppressive Domain Mutated


text: public

text: ArrayExpress

text: peritoneal macrophage

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: No stimulation

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: URMITE

text: public

text: Anaerococcus sp. Marseille-P2765

text: Anaerococcus sp. Marseille-P2765

text: Anaerococcus mediterraneensis genome


text: URMITE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Anaerococcus sp. FC4

text: Anaerococcus sp. FC4

text: Anaerococcus urinomassiliensis genome


text: UBT

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Forest

characteristic: environment (biome)

text: Steigerwald

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

text: 49.52 N

characteristic: geographic location (latitude)

text: 10.28 E

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: ph

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Megamonas sp. Marseille-P3344

characteristic: organism

text: Megamonas sp. Marseille-P3344

characteristic: strain

text: Megamonas massiliensis genome

characteristic: title


text: URMITE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Olsenella sp. Marseille-P2912

text: Olsenella sp. Marseille-P2912

text: Olsenella provencensis genome


text: IZB

text: public

text: Note: Untrimmed. Trim adaptor starting with: TGGAATTCTCGGGTG

characteristic: description

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: NOWA1/2-KD sRNAs 60% cells with MAC fragmentation


text: IZB

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: NOWA1/2-KD sRNAs 100% cells with MAC fragmentation


text: IZB

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: NOWA1/2-KD sRNAs 100% cells with MAC fragmentation and visible anlagen


text: IZB

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: EV-KD sRNAs 60% cells with MAC fragmentation


text: IZB

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: EV-KD sRNAs 100% cells with MAC fragmentation


text: IZB

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: EV-KD sRNAs 100% cells with MAC fragmentation and visible anlagen


E-MTAB-5266:JA004 C

text: public

text: E-MTAB-5266:JA004 C

tag: Namespace:UCL Great Ormond Street Institute of Child Health

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Fresh frozen tumour material Laser Capture Qiagen miRNeasy ® mini kit Clontech SMARTer ® low input RNA kit followed by Nextera XT library prep

text: adamantinomatous craniopharyngioma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Cluster tissue

characteristic: sampling site

text: Homo sapiens

text: JA004 C


E-MTAB-5266:JA004 C2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL Great Ormond Street Institute of Child Health

text: public

text: E-MTAB-5266:JA004 C2

text: ArrayExpress

text: human

text: adamantinomatous craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Cluster tissue

text: Homo sapiens

text: JA004 C2


E-MTAB-5266:JA004 G

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5266:JA004 G

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adamantinomatous craniopharyngioma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Reactive glial tissue

text: Homo sapiens

text: JA004 G


E-MTAB-5266:JA004 NC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5266:JA004 NC

text: ArrayExpress

text: human

text: adamantinomatous craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Palisading epithelium

text: Homo sapiens

text: JA004 NC

characteristic: title


E-MTAB-5266:JA004 NC2

text: public

characteristic: SRA accession

text: E-MTAB-5266:JA004 NC2

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adamantinomatous craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Palisading epitheliun

text: Homo sapiens

text: JA004 NC2


E-MTAB-5266:JA029 C

text: public

text: E-MTAB-5266:JA029 C

text: ArrayExpress

text: human

characteristic: common name

text: adamantinomatous craniopharyngioma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: brain

text: Cluster tissue

text: Homo sapiens

text: JA029 C


E-MTAB-5266:JA029 NC

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5266:JA029 NC

text: ArrayExpress

text: human

text: adamantinomatous craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Palisading epithlium

characteristic: sampling site

text: Homo sapiens

text: JA029 NC


E-MTAB-5266:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-5266:Sample 2

text: ArrayExpress

text: human

text: adamantinomatous craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Reactive glial tissue

text: Homo sapiens

text: Sample 2


text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Bacteroides sp. Marseille-P2644

text: Bacteroides sp. Marseille-P2644

characteristic: strain

text: Bacteroides mediterraneensis genome


text: URMITE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Actinomyces sp. Marseille-P2825

characteristic: organism

text: Actinomyces sp. Marseille-P2825

text: Actinomyces bouchesdurhonensis genome

characteristic: title


text: URMITE

text: public

characteristic: SRA accession

text: Mogibacterium sp. Marseille-P2645

text: Mogibacterium sp. Marseille-P2645

text: Mediterranea massiliensis genome


text: public

text: ASF4 mouse colon

characteristic: description

text: Yes

characteristic: environmental sample

text: Mus musculus

characteristic: host scientific name

text: Mucispirillum schaedleri ASF457

text: Mucispirillum schaedleri ASF457


E-MTAB-5267:Sample 1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5267:Sample 1

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Fresh frozen tumour and control samples Qiagen miRNA easy mini kit TruSeq stranded mRNA LTv2 kit

text: Adamantinomatous Craniopharyngioma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-5267:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5267:Sample 10

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 10


E-MTAB-5267:Sample 11

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5267:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 11


E-MTAB-5267:Sample 12

text: public

characteristic: SRA accession

text: E-MTAB-5267:Sample 12

text: ArrayExpress

text: human

characteristic: description

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 12

characteristic: title


E-MTAB-5267:Sample 13

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5267:Sample 13

text: ArrayExpress

characteristic: broker name

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 13


E-MTAB-5267:Sample 14

text: public

text: E-MTAB-5267:Sample 14

text: ArrayExpress

text: human

characteristic: common name

text: Adamantinomatous Craniopharyngioma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 14


E-MTAB-5267:Sample 15

text: public

text: E-MTAB-5267:Sample 15

text: ArrayExpress

text: human

text: Pituitary Gland Adenoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pituitary gland

characteristic: organism part

text: Homo sapiens

text: Sample 15


E-MTAB-5267:Sample 16

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5267:Sample 16

text: ArrayExpress

text: human

text: Pituitary Gland Adenoma

text: Homo sapiens

text: Homo sapiens

text: pituitary gland

text: Homo sapiens

text: Sample 16


E-MTAB-5267:Sample 17

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5267:Sample 17

text: ArrayExpress

text: human

text: Pituitary Gland Adenoma

text: Homo sapiens

text: Homo sapiens

text: pituitary gland

text: Homo sapiens

text: Sample 17


E-MTAB-5267:Sample 18

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5267:Sample 18

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 18


E-MTAB-5267:Sample 19

text: public

characteristic: INSDC status

text: E-MTAB-5267:Sample 19

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 19


E-MTAB-5267:Sample 2

text: public

characteristic: SRA accession

text: E-MTAB-5267:Sample 2

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 2


E-MTAB-5267:Sample 20

text: public

text: E-MTAB-5267:Sample 20

text: ArrayExpress

text: human

characteristic: description

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 20

characteristic: title


E-MTAB-5267:Sample 21

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5267:Sample 21

text: ArrayExpress

characteristic: broker name

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 21


E-MTAB-5267:Sample 22

text: public

text: E-MTAB-5267:Sample 22

text: ArrayExpress

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: pituitary gland

text: Homo sapiens

text: Sample 22


E-MTAB-5267:Sample 23

text: public

text: E-MTAB-5267:Sample 23

text: ArrayExpress

text: human

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pituitary gland

text: Homo sapiens

text: Sample 23


E-MTAB-5267:Sample 24

text: public

text: E-MTAB-5267:Sample 24

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: pituitary gland

characteristic: organism part

text: Homo sapiens

text: Sample 24


E-MTAB-5267:Sample 3

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5267:Sample 3

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 3


E-MTAB-5267:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-5267:Sample 4

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 4


E-MTAB-5267:Sample 5

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5267:Sample 5

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 5


E-MTAB-5267:Sample 6

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5267:Sample 6

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 6


E-MTAB-5267:Sample 7

text: public

characteristic: SRA accession

text: E-MTAB-5267:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 7


E-MTAB-5267:Sample 8

text: public

text: E-MTAB-5267:Sample 8

text: ArrayExpress

text: human

characteristic: description

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 8


E-MTAB-5267:Sample 9

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5267:Sample 9

text: ArrayExpress

text: human

text: Adamantinomatous Craniopharyngioma

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 9

characteristic: title


text: URMITE

text: public

text: Sutterellaceae bacterium Marseille-P2968

characteristic: strain

text: Duodenibacillus massiliensis genome


text: URMITE

text: public

text: Bacteroides sp. Marseille-P3208T

text: Bacteroides sp. Marseille-P3208T

text: Bacteroides ilei genome


text: URMITE

text: public

text: Parabacteroides sp. Marseille-P3136

text: Parabacteroides sp. Marseille-P3136

text: Parabacteroides timonensis genome


text: UCSDMI

text: public

text: BI

characteristic: anonymized name

text: UBERON:gastro-intestinal system

characteristic: body habitat

text: UBERON:intestinal mucosa

characteristic: body product

text: UBERON:intestine

characteristic: body site

text: middle

characteristic: bowel

text: Control #1 bowel, together group

text: control

characteristic: diagnosis

text: fed

characteristic: diet

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: organic material

text: USA:CA:Los Angeles

characteristic: geo loc name

text: zebrafish

characteristic: host common name

text: Danio rerio

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: fish gut metagenome

text: UCSDMI

text: FALSE

text: fish gut mucosa

characteristic: sample type

text: fish gut metagenome

text: Missing: Not provided

characteristic: sex

characteristic: tank

text: shared

text: Intestinal Adaptation in Proximal and Distal Segments: Two Epithelial Responses Diverge After Intestinal Separation