characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL Institute of Child Health

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UCL Institute of Child Health

text: ArrayExpress

characteristic: broker name

text: common myeloid progenitor

characteristic: cell type

text: human

characteristic: common name

text: Protocols: 100 (or less, if 100 were not available) highly purified Haematopoietic stem and progenitor cells (HSPCs) from cord blood samples were sorted directly into lysis buffer in RNAse inhibitor (Clontech) and stored at -80°C before further processing. cDNA synthesis was done with Smarter Ultra low input RNA kit v1 (Clontech). Illumina libraries were generated using Nextera XT DNA (Illumina). Library size and quality were checked using Agilent High-Sensitivity DNA chip with Agilent Bioanalyser (Agilent Technologies). Concentration of indexed libraries was determined using Qubit High-Sensitivity DNA kit (Invitrogen).

characteristic: description

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: umbilical cord blood

characteristic: organism part

characteristic: phenotype

text: Homo sapiens

characteristic: title


status: PUBLIC

tag: attribute

text: UCL Institute of Child Health

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: granulocyte-macrophage progenitor

text: human

text: Homo sapiens

text: Homo sapiens

text: umbilical cord blood

text: Homo sapiens

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCL Institute of Child Health

text: public

text: ArrayExpress

text: heamatopoietic stem cell

text: human

text: Homo sapiens

text: Homo sapiens

text: umbilical cord blood

text: Homo sapiens


characteristic: External Id

text: UCL Institute of Child Health

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: lymphoid-primed multipotent progenitor

text: human

text: Homo sapiens

text: Homo sapiens

text: umbilical cord blood

text: Homo sapiens


text: UCL Institute of Child Health

text: public

text: ArrayExpress

characteristic: broker name

text: megakaryocyte-erythroid progenitor

characteristic: cell type

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: umbilical cord blood

text: Homo sapiens


text: UCL Institute of Child Health

text: public

text: ArrayExpress

text: multi-lymphoid progenitor

text: human

characteristic: description

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: umbilical cord blood

text: Homo sapiens


text: UCL Institute of Child Health

text: public

text: ArrayExpress

text: multipotent progenitor

text: human

text: Homo sapiens

text: Homo sapiens

text: umbilical cord blood

characteristic: organism part

characteristic: phenotype

text: Homo sapiens

characteristic: title


text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University Hospital Galway

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Stanley

text: Stanley

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhi

characteristic: organism

text: Typhi

text: Subsp. I

characteristic: title


text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Ohio

text: Ohio

text: Subsp. I


E-MTAB-5460:Sample 1

text: OXFORD

text: public

text: E-MTAB-5460:Sample 1

text: ArrayExpress

characteristic: broker name

text: Protocols: Cells spun down, washed and resuspended in lysis buffer QIAGEN RNAeasy kit Illumina TruSeq

characteristic: description

text: bloodstream form

characteristic: developmental stage

text: VSG121 expression

characteristic: genotype

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Sample 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GIFS

text: public

text: Brownfield

characteristic: environment (biome)

text: former gas station

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Canada

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Broadway&8th Biostimulation

characteristic: project name

text: soil metagenome

text: Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: COLUMBIA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:COLUMBIA UNIVERSITY

characteristic: Submitter Id

text: Synthetic DNA sample that stores 2.14Mbyte of information.

characteristic: description

text: synthetic construct

characteristic: organism

text: synthetic construct

text: DNA storage

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COLUMBIA UNIVERSITY

text: public

text: DNA is an attractive medium for storing data

text: synthetic construct

text: synthetic construct

text: DNA Fountain for DNA storage


text: IATA-CSIC

text: public

characteristic: collection date

text: human-associated

characteristic: environment (biome)

text: human-associated

characteristic: environment (feature)

text: breastmilk

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

characteristic: investigation type

text: human metagenome

text: Multiple approaches detect the presence of fungi in human breast milk samples.

text: human metagenome

text: BREASTMILK


text: IATA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human-associated

text: human-associated

text: breastmilk

text: Spain

text: human-associated

text: mimarks-survey

text: human metagenome

characteristic: project name

text: human metagenome

characteristic: sequencing method

text: BREAST MILK SAMPLE


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IATA-CSIC

text: public

characteristic: collection date

text: human-associated

text: breastmilk

text: breastmilk

text: Spain

text: human-associated

text: mimarks-survey

text: human metagenome

characteristic: organism

text: human metagenome

text: BREAST MILK SAMPLE

characteristic: title


text: IATA-CSIC

text: public

text: human-associated

characteristic: environment (biome)

text: breastmilk

characteristic: environment (feature)

text: breastmilk

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

text: human metagenome

text: human metagenome

text: Breast milk sample


text: mixed DNA library

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: mixed DNA library

characteristic: common name

text: mixed DNA library

text: mixed DNA library


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

text: public

text: Culturomics to increase the human bacterial repertoire

characteristic: description

text: Virgibacillus proomii

characteristic: organism

text: Virgibacillus proomii

text: V-P

characteristic: strain

text: Virgibacillus promii genome


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Saintpaul

text: Saintpaul

characteristic: serovar

text: Subsp. I

characteristic: sub species

characteristic: title


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Derby

text: Derby

text: Subsp. I


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Paratyphi A

text: Paratyphi A

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Anatum

characteristic: organism

text: Anatum

text: Subsp. I


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Single-cell cDNA using Smartseq2. naive splenic CD4 T cell

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: southeastern Asian house mouse

text: Mus musculus castaneus

text: Mus musculus castaneus

characteristic: title


text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: western European house mouse

text: Mus musculus domesticus

text: Mus musculus domesticus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

characteristic: Submitter Id

text: Cuture of halophilic archaea and bacteria from human gut

characteristic: description

text: Pseudomonas halophila

text: Pseudomonas halophila

text: P-halo

text: Pseudomonas halophila genome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BANG

text: public

text: Paragordius varius

text: Paragordius varius

text: male

characteristic: sex


text: BANG

text: public

text: Paragordius varius

characteristic: organism

text: Paragordius varius

text: female


text: URMITE

text: public

text: Culturomics reveal the hidden halophilic archaea and bacteria in human gut

text: Oceanobacillus sojae

text: Oceanobacillus sojae

text: Oceanobacillus sojae genome


CECT 5068T

text: UVEG

text: public

text: CECT 5068T

characteristic: collection date

text: saltwater marsh

characteristic: environment (biome)

text: marine mud

characteristic: environment (feature)

text: marine mud

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Vibrio gazogenes

text: Whole genome sequencing of Vibrio gazogenes CECT 5068, type strain

characteristic: project name

text: Vibrio gazogenes

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method

text: CECT 5068T

text: Vibrio gazogenes CECT 5068T


CECT 7878T

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UVEG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CECT 7878T

characteristic: Submitter Id

text: shallow coastal regions of Keelung

text: seawater

text: seawater

text: Taiwan

text: mimarks-survey

text: Vibrio ruber DSM 16370

text: Whole genome sequencing of Vibrio ruber CECT 7878T, type strain

text: Vibrio ruber DSM 16370

text: Illumina Miseq

text: CECT 7878T

characteristic: strain

text: Vibrio ruber CECT 7878T

characteristic: title

text: water

characteristic: water environmental package


characteristic: External Id

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Enteritidis

characteristic: organism

text: Enteritidis

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Agona

text: Agona

text: Subsp. I

characteristic: title


text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Mikawasima

text: Mikawasima

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Hadar

characteristic: organism

text: Hadar

characteristic: serovar

text: Subsp. I


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Saintpaul

text: Subsp. I

characteristic: sub species


characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Agama

text: Agama

text: Subsp. I


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Medical University of Vienna, Department of Pediatrics and Adolescent Medicine, Vienna, Austria

text: ArrayExpress

characteristic: broker name

text: cells isolated from peritoneal dialysis effluent

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Peritoneal cells were isolated from overnight and PET-effluents by centrifugation 200 x g for 30 minutes. The randomized cross-over pilot study (EudraCT 2012-004004-36) was conducted at the Medical University of Vienna. Patients on peritoneal dialysis aged â‰¥ 19 years were included if they were stable for at least 2 months (absence of peritonitis or severe concomitant disease). Exclusion criteria included known hypersensitivity to or treatment with another investigational drug, presumed non-compliance, limited efficacy of peritoneal dialysis, clinically significant inflammation, body weight < 50 kg, or immune-suppressive therapy. One patient among 7 screened subjects was not enrolled in the trial due to kidney transplantation before initiation of the trial. Six clinically stable PD patients (4 male, 2 female) aged 55.3 (45-66) years, treated with PD for 17.8 (4.9-48.1) months, with total Kt/V of 2.4 (1.85-2.87), were included in the trial following written informed consent. Two patients had a history of peritonitis > 2 months before enrolment. 4 patients had residual renal function (Tab. 1). Patients were randomly allocated to cross-over treatment sequences. Treatments were separated by a wash-out period (> 28 days). For AlaGln treatment, 17.4 ml or 34.8 ml DipeptivenÂ® (200 mg AlaGln/ml, Fresenius-Kabi, Bad Homburg, Germany) was added to 2.0 L of PDF (PhysionealÂ® 40 with 3.86% glucose, Baxter) immediately before instillation, resulting in a final AlaGln concentration of 8 or 16 mM AlaGln (= 0.17% or 0.34%). The increase in total osmolality of the modified PDF was less than 1%. The control treatment was carried out with unmodified PDF (PhysionealÂ® 40 with 3.86% glucose, Baxter). RNA was isolated from cell pellets using Qiazol buffer and the miRNeasy Mini Kit (Qiagen) per manufacturer's protocol. RNA was checked for integrity with the Agilent Bioanalyzer 2100. RNA-seq libraries were prepared with TruSeq Stranded mRNA LT sample preparation kit (Illumina) using Sciclone and Zephyr liquid handling robotics (PerkinElmer).

characteristic: description

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: Medical University of Vienna, Department of Pediatrics and Adolescent Medicine, Vienna, Austria

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Typhi

characteristic: organism

text: Typhi

characteristic: serovar

text: Subsp. I


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Poona

text: Poona

text: Subsp. I

characteristic: sub species


E-MTAB-5431:Sample 7

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 7

tag: Namespace:Iowa State University

characteristic: Submitter Id

unit: day

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

characteristic: common name

text: Protocols: Chickens were housed in 4 separate rooms (2 challenged rooms, 2 non-challenged rooms) and the two breeds were intermixed in each room in a biosafety level 2 facility. To obtain tissue samples at 2, 6, and 10 days post inoculation, approximately one-third of the birds were euthanized with sodium pentobarbital solution at each of the three time points. The trachea was harvested and placed into RNAlater® solution (ThermoFisher Scientific, Waltham, Massachusetts) for short-term storage. Within a week, the sheet of epithelial cells from each trachea was carefully removed by peeling from the interior surface of the trachea with forceps. This epithelial cell lining was placed into a -80°C freezer for long-term storage. Challenged chickens were inoculated with a high titered lentogenic Newcastle Disease Virus (NDV) strain via the eyes and nostrils at three weeks of age. Non-challenged chickens were given PBS via the same route. RNA was isolated from the trachea epithelial cells using the RNAqueous® kit (ThermoFisher Scientific, Waltham, Massachusetts) and samples were then DNase treated using the DNA-free™ kit (ThermoFisher Scientific, Waltham, Massachusetts). The quality of all samples was validated (RNA quality number>8.0) using the Fragment Analyzer™ (Advanced Analytical Technologies, Ankeny, Iowa). A 500 ng input for each sample was utilized to construct the cDNA library using TruSeq® RNA Sample Preparation v2 Guide (Illumina, San Diego, California) using the high throughput protocol. Following cDNA library validation using the Fragment Analyzer™ (Advanced Analytical Technologies, Ankeny, Iowa).

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: male

characteristic: sex

text: Sample 7

characteristic: title


E-MTAB-5431:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 6

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: female

text: Sample 6


E-MTAB-5431:Sample 5

characteristic: External Id

text: Iowa State University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 5

characteristic: Submitter Id

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: male

text: Sample 5


E-MTAB-5431:Sample 16

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 16

text: Fayoumi

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: resistant

text: Gallus gallus

text: male

text: Sample 16


E-MTAB-5431:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 17

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 17

characteristic: title


E-MTAB-5431:Sample 18

characteristic: External Id

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5431:Sample 18

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: female

text: Sample 18


E-MTAB-5431:Sample 19

text: Iowa State University

text: public

characteristic: SRA accession

text: E-MTAB-5431:Sample 19

characteristic: Submitter Id

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: male

text: Sample 19


E-MTAB-5431:Sample 29

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 29

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: susceptible

text: Gallus gallus

text: female

text: Sample 29


E-MTAB-5431:Sample 28

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC center name

text: public

text: E-MTAB-5431:Sample 28

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 28

characteristic: title


E-MTAB-5431:Sample 32

text: Iowa State University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 32

characteristic: Submitter Id

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: female

text: Sample 32


E-MTAB-5431:Sample 30

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 30

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: male

text: Sample 30


E-MTAB-5431:Sample 31

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 31

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: susceptible

text: Gallus gallus

text: male

text: Sample 31


E-MTAB-5431:Sample 42

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 42

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 42

characteristic: title


E-MTAB-5431:Sample 43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 43

characteristic: Submitter Id

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: female

text: Sample 43


E-MTAB-5431:Sample 41

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 41

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: male

text: Sample 41


E-MTAB-5431:Sample 44

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5431:Sample 44

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: resistant

text: Gallus gallus

text: male

text: Sample 44


E-MTAB-5431:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 10

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: male

characteristic: sex

text: Sample 10

characteristic: title


E-MTAB-5431:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 11

characteristic: Submitter Id

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: female

text: Sample 11


E-MTAB-5431:Sample 9

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5431:Sample 9

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: male

text: Sample 9


E-MTAB-5431:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 8

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: susceptible

text: Gallus gallus

text: female

text: Sample 8


E-MTAB-5431:Sample 23

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 23

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 23

characteristic: title


E-MTAB-5431:Sample 20

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 20

characteristic: Submitter Id

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: male

text: Sample 20


E-MTAB-5431:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 22

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: male

text: Sample 22


E-MTAB-5431:Sample 21

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 21

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: resistant

text: Gallus gallus

text: male

text: Sample 21


E-MTAB-5431:Sample 34

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 34

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 34

characteristic: title


E-MTAB-5431:Sample 36

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 36

characteristic: Submitter Id

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: male

text: Sample 36


E-MTAB-5431:Sample 35

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 35

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: female

text: Sample 35


E-MTAB-5431:Sample 33

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5431:Sample 33

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: susceptible

text: Gallus gallus

text: male

text: Sample 33


E-MTAB-5431:Sample 46

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 46

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

characteristic: phenotype

text: Gallus gallus

text: male

characteristic: sex

text: Sample 46

characteristic: title


E-MTAB-5431:Sample 45

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 45

characteristic: Submitter Id

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: female

text: Sample 45


E-MTAB-5431:Sample 47

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5431:Sample 47

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: male

text: Sample 47


E-MTAB-5431:Sample 48

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 48

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: resistant

text: Gallus gallus

text: female

text: Sample 48


E-MTAB-5431:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 4

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: male

characteristic: sex

text: Sample 4

characteristic: title


E-MTAB-5431:Sample 3

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 3

characteristic: Submitter Id

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: male

text: Sample 3


E-MTAB-5431:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 2

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: female

text: Sample 2


E-MTAB-5431:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 1

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: susceptible

text: Gallus gallus

text: female

text: Sample 1


E-MTAB-5431:Sample 13

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 13

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 13

characteristic: title


E-MTAB-5431:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 12

characteristic: Submitter Id

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: male

text: Sample 12


E-MTAB-5431:Sample 14

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 14

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: female

text: Sample 14


E-MTAB-5431:Sample 15

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5431:Sample 15

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: resistant

text: Gallus gallus

text: male

text: Sample 15


E-MTAB-5431:Sample 26

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 26

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 26

characteristic: title


E-MTAB-5431:Sample 27

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 27

characteristic: Submitter Id

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: male

text: Sample 27


E-MTAB-5431:Sample 25

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5431:Sample 25

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: susceptible

text: Gallus gallus

text: male

text: Sample 25


E-MTAB-5431:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 24

text: Leghorn

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: susceptible

text: Gallus gallus

text: female

text: Sample 24


E-MTAB-5431:Sample 40

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC last update

text: public

text: E-MTAB-5431:Sample 40

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

characteristic: phenotype

text: Gallus gallus

text: male

characteristic: sex

text: Sample 40

characteristic: title


E-MTAB-5431:Sample 38

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5431:Sample 38

characteristic: Submitter Id

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: male

text: Sample 38


E-MTAB-5431:Sample 39

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 39

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: epithelial cell

characteristic: cell type

text: chicken

text: Gallus gallus

text: Gallus gallus

text: trachea

text: resistant

text: Gallus gallus

text: female

text: Sample 39


E-MTAB-5431:Sample 37

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5431:Sample 37

text: Fayoumi

text: ArrayExpress

text: epithelial cell

text: chicken

characteristic: common name

characteristic: description

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: trachea

characteristic: organism part

text: resistant

text: Gallus gallus

text: female

text: Sample 37


text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Culturomics to increase the human bacterial repertoire

text: Terribacillus halophilus

text: Terribacillus halophilus

characteristic: strain

text: Terribacillus halophilus genome

characteristic: title


text: Gut metagenome

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Gut metagenome

text: gut metagenome

characteristic: organism

text: bacterial DNA from preterm faeces

characteristic: sample description

text: gut metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

text: public

text: Virgibacillus siamensis

text: Virgibacillus siamensis

text: Virgibacillus siamensis genome


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Enteritidis

characteristic: serovar

text: Subsp. I

characteristic: sub species


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Montevideo

text: Montevideo

text: Subsp. I

characteristic: title


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Typhi

text: Subsp. I


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

characteristic: organism

text: Hadar

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Typhimurium

text: Subsp. I


text: Enterobacter cloacae

characteristic: ArrayExpress-Species

text: SC

text: public

text: Enterobacter cloacae

characteristic: common name

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Acinetobacter baumannii

text: SC

text: public

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Enterococcus faecalis

text: SC

text: public

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Enterococcus faecalis


text: Enterococcus faecium

text: SC

text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Enterococcus faecium


text: Shigella dysenteriae

text: SC

text: public

text: Shigella dysenteriae

text: Shigella dysenteriae

text: Shigella dysenteriae


text: Shigella flexneri

text: SC

text: public

text: Shigella flexneri

text: Shigella flexneri

text: Shigella flexneri


text: Neisseria meningitidis Serogroup C

text: SC

text: public

text: Neisseria meningitidis Serogroup C

text: Neisseria meningitidis serogroup C

text: Neisseria meningitidis serogroup C


text: Neisseria meningitidis

text: SC

text: public

text: Neisseria meningitidis

text: Neisseria meningitidis

text: Neisseria meningitidis


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Newport

text: Newport

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-CHECKLIST

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Bareilly

text: Bareilly

text: Subsp. I

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Stanley

text: Stanley

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Braenderup

characteristic: organism

text: Braenderup

text: Subsp. I


E-MTAB-5490:Sample 1

text: public

text: E-MTAB-5490:Sample 1

tag: Namespace:Karolinska Institutet, Department of Oncology-Pathology

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: 8h rapamycin (300nM) treated U1810 cells compared to DMSO treated cells. Cells cultured in RPMI medium supplemented with 10% FCS Cells were washed with cold 13 PBS buffer and swelled in swelling buffer (10mM Tris-Cl pH 7.5, 2mM MgCl2, 3mM CaCl2) for 5 min on ice and collected. Cells were lysed in lysis buffer (swelling buffer with 0.5% NP-40, 2 units per millilitre Superase In and 10% glycerol) and finally re-suspended in 100 ml of freezing buffer (50mM Tris-Cl pH 8.3, 40% glycerol, 5mM MgCl2, 0.1mM EDTA). For the run-on assay, re-suspended nuclei were mixed with an equal volume of reaction buffer (10mMTris-Cl pH 8.0, 5mMMgCl2, 1mMDTT, 300mM KCl, 20 units of SUPERase In, 1% sarkosyl, 500 mM ATP, GTP, and Br-UTP, 2 mM CTP) and incubated for 5 min at 30 uC. The nuclear-run-on RNA (NRO-RNA) was then extracted with TRIzol LS reagent (Invitrogen) following the manufacturer’s instructions. NRO-RNA was then subjected to base hydrolysis on ice for 40 min and followed by treatment withDNase I and antarctic phosphatase. To purify the Br-UTP-labelled nascent RNA, the NRO-RNA was immunoprecipitated with anti-BrdUargarose beads (Santa Cruz Biotech) in binding buffer (0.53 SSPE, 1mM EDTA, 0.05% Tween-20). To repair the end, the immunoprecipitated BrU-RNA was re-suspended in a 50 ml reaction (45 ml DEPC water, 5.2 ml T4 PNK buffer, 1 ml SUPERase In and 1 ml T4 PNK (NEB)) and incubated at 37 uC for 1 h. The RNA was extracted and precipitated using acidic phenol-chloroform. The complementary DNA (cDNA) synthesis was performed basically as in ref. 36 with a few minor modifications. First, RNA fragments were subjected to a poly-A tailing reaction by poly-A polymerase (NEB) for 30 min at 37 uC. Subsequently, reverse transcription was performed using oNTI223 primer (59-pGATCGTCGGACTGTAGAACTCT; CAAGCAGAAGACGGCATACGA TTTTTTTTTTTTTTTTTTTTVN). Second, tailed RNA (8.0 ml) was subjected to reverse transcription using superscript III (Invitrogen).The cDNA products were separated on a 10% polyacrylamide TBE-urea gel and the extended firststrand product (100-500 base pairs) was excised and recovered by gel extraction. After that, the first-strand cDNA was circularized by CircLigase (Epicentre) and relinearized by Ape1 (NEB). Relinearized single strand cDNA (sscDNA) was separated on a 10% polyacrylamide TBE gel and the product of needed size was excised (,120-320 base pairs) for gel extraction. Finally, single strand cDNA template was amplified by PCR using the Phusion High-Fidelity enzyme (NEB) according to the manufacturer’s instructions with two oligonucleotide primers, oNTI200 (59-CAAGCAGAAGACGGCATA) and oNTI201 (59-AATGATACGG CGACCACCGACAGGT TCAGAGTTCTACAGTCCGACG).

characteristic: description

text: non-small cell lung carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 1


E-MTAB-5490:Sample 2

characteristic: ENA-CHECKLIST

text: Karolinska Institutet, Department of Oncology-Pathology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5490:Sample 2

text: ArrayExpress

text: human

text: non-small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


characteristic: ENA-FIRST-PUBLIC

text: J CRAIG VENTER INSTITUTE

characteristic: INSDC last update

text: public

tag: Namespace:J CRAIG VENTER INSTITUTE

text: metagenome

text: assembly of oxygen-mimimum zones across world oceans

text: marine

characteristic: environment (biome)

text: metagenome

text: metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

text: THE UNIVERSITY OF HONG KONG

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:THE UNIVERSITY OF HONG KONG

characteristic: Submitter Id

text: human

text: whole exome sequencing

text: Homo sapiens

text: Homo sapiens

text: WES


characteristic: External Id

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

tag: Namespace:FUNCTIONAL GENOMICS CENTER ZURICH

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: AMC

text: public

text: Academic Medical Center Amsterdam

characteristic: collected by

characteristic: collection date

text: Bacterial genetic risk factors for disease outcome after listerial meningitis in a nationwide cohort from The Netherlands.

text: No

characteristic: environmental sample

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: listeria monocytogenes

characteristic: isolate

text: cerebrospinal fluid

characteristic: isolation source host associated

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: serovar

text: Listeria monocytogenes meningitis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF NEW HAMPSHIRE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF NEW HAMPSHIRE

text: cactus mouse

characteristic: common name

text: adult - hydrated

characteristic: description

text: Peromyscus eremicus

text: Peromyscus eremicus

text: kidney

characteristic: tissue type

text: Renal RNAseq

characteristic: title


characteristic: External Id

text: UNIVERSITY OF NEW HAMPSHIRE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: cactus mouse

text: adult - dehydrated

text: Peromyscus eremicus

characteristic: organism

text: Peromyscus eremicus

text: kidney

text: Renal RNAseq


text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

text: Psychrobacter pasteurii CIP 110853, Gram-negative, non-motile, non-spore-forming, non-pigmented, oxidase and catalase positive bacterial novel species.

text: Psychrobacter sp. CIP 110853

text: Psychrobacter sp. CIP 110853

text: Psychrobacter pasteurii CIP 110853


text: INSTITUT PASTEUR

text: public

text: Psychrobacter piechaudii CIP 110854, Gram-negative, non-motile, non-spore-forming, non-pigmented, oxidase and catalase positive bacterial novel species.

text: Psychrobacter sp. CIP 110854

text: Psychrobacter sp. CIP 110854

text: Psychrobacter piechaudii CIP 110854


text: public

tag: Namespace:Institute of Bioinformatics and Systems Biology

text: The yeast species Zygosaccharomyces bailii exhibits a remarkable but poorly understood intrinsic resistance to acetic acid and other weak acids used as food preservatives, being the most significant spoilage yeast especially in acidic drinks and food products. Z. bailii may also be explored in Biotechnology as cell factory when the growth substrates or the bioproducts envisaged includes deleterious concentrations of a wide range of weak acids. The sequence and annotation of the genome of the haploid, non-flocculating strain Z. bailii IST302, isolated from a spontaneous fermentation of grape must, is essential to facilitate the use of genetic engineering technology in this species, which is much more susceptible to manipulate genetically and to study the physiology, compared with the 2 strains with the genome sequence currently available: ISA1307 which is indeed a flocculating hybrid strain, derived from Z. bailii and a closely related species and the highly flocculating CLIB213T. Such better performance of strain IST302 will allow a systems-level understanding of the molecular mechanisms of stress tolerance envisaging the rational control of the activity of this highly threatening spoilage yeast, as well as for inspiring and guiding novel biotechnological applications.

text: Zygosaccharomyces bailii

text: Zygosaccharomyces bailii

characteristic: strain

text: Zygosaccharomyces bailii IST302 genome sequencing


text: UMCG

text: public

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Clinical isolate

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Hypervirulent Klebsiella pneumoniae in Germany


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: External Id

text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

text: Subsp. I

characteristic: title


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Cerro

characteristic: organism

text: Cerro

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Infantis

text: Infantis

text: Subsp. I


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Napoli

text: Napoli

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Braenderup

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Saintpaul

text: Saintpaul

characteristic: serovar

text: Subsp. I

characteristic: sub species


text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Emek

text: Emek

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Hadar

text: Hadar

text: Subsp. I

characteristic: title


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-

characteristic: organism

text: Subsp. I


E-MTAB-5384:Hela NC ASO replicate 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5384:Hela NC ASO replicate 1

tag: Namespace:Center for stem cell biology and tissue engineering, Sun Yat-Sen University

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Hela cells no treatment or, NC ASO, snoRD50a ASOs treated, the concentration is 50 nM, we used RNAi max for ASO transfection, and harvest cells 2 days after transfection. RNAs recovered by Fip1 antibodies were ligated onto an 3' adaptor, RT reactions were carried out for converting RNAs to cDNA, cDNAs were further circularized, digested, and PCR amplified. PCR product were sent for sequencing.

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hela NC ASO replicate 1


E-MTAB-5384:Hela NC ASO replicate 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for stem cell biology and tissue engineering, Sun Yat-Sen University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5384:Hela NC ASO replicate 2

text: ArrayExpress

text: HeLa

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hela NC ASO replicate 2


E-MTAB-5384:Hela replicate 1

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5384:Hela replicate 1

characteristic: Submitter Id

text: ArrayExpress

text: HeLa

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hela replicate 1


E-MTAB-5384:Hela replicate 2

text: public

text: E-MTAB-5384:Hela replicate 2

text: ArrayExpress

text: HeLa

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hela replicate 2

characteristic: title


E-MTAB-5384:Hela snoRD50a ASO-1

text: public

text: E-MTAB-5384:Hela snoRD50a ASO-1

text: ArrayExpress

text: HeLa

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hela snoRD50a ASO-1


E-MTAB-5384:Hela snoRD50a ASO-2

text: public

text: E-MTAB-5384:Hela snoRD50a ASO-2

text: ArrayExpress

text: HeLa

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hela snoRD50a ASO-2


SRS

text: Technische Universitat Munchen - WZW

text: public

text: SRS

tag: Namespace:Technische Universitat Munchen - WZW

text: Sporisorium reilianum f. sp. reilianum causes head smut on sorghum and has only very limited capacity to cause head smut on maize. Genome sequencing of the strain SRS1_H2-8 and comparison of its genome to the genome of the maize head smut fungus Sporisorium reilianum f. sp. zeae might reveal components of host adaptation of Sporisorium reilianum.

text: Sporisorium reilianum f. sp. reilianum

text: Sporisorium reilianum f. sp. reilianum

characteristic: strain

text: Sequencing and comparative genomics of Sporisorium reilianum f. sp. reilianum strain SRS1_H2-8


text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

text: public

tag: Namespace:IFAPA CENTRO DE CHURRIANA (MÁLAGA)

text: strawberry

text: Tissue from a pool of receptacles at the green stage of strawberry fruits

text: Green

characteristic: dev stage

text: Fragaria x ananassa

characteristic: organism

text: Fragaria x ananassa

text: Receptacle

characteristic: tissue type

text: Green Receptacle


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

text: public

text: strawberry

text: Tissue from a pool of receptacles at the white stage of strawberry fruits

text: White

text: Fragaria x ananassa

text: Fragaria x ananassa

text: Receptacle

text: White receptacle


text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

text: public

text: strawberry

characteristic: common name

text: Tissue from a pool of receptacles at the turning stage of strawberry fruits

text: Turning

text: Fragaria x ananassa

text: Fragaria x ananassa

text: Receptacle

text: Turning receptacle


text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

text: public

text: strawberry

text: Tissue from a pool of receptacles at the red stage of strawberry fruits

characteristic: description

text: Red

text: Fragaria x ananassa

text: Fragaria x ananassa

text: Receptacle

text: Red receptacle


characteristic: ENA-LAST-UPDATE

text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

text: public

text: strawberry

text: Tissue from a pool of achenes at the green stage of strawberry fruits

text: Green

text: Fragaria x ananassa

text: Fragaria x ananassa

text: Achene

text: Green achene


characteristic: External Id

text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

text: public

text: strawberry

text: Tissue from a pool of achenes at the white stage of strawberry fruits

text: White

text: Fragaria x ananassa

text: Fragaria x ananassa

text: Achene

text: White achene


Turning _A

text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

characteristic: INSDC center name

text: public

text: Turning _A

text: strawberry

text: Tissue from a pool of achenes at the turning stage of strawberry fruits

text: Turning

text: Fragaria x ananassa

text: Fragaria x ananassa

text: Achene

text: Turning achene


text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

characteristic: INSDC first public

text: public

text: strawberry

text: Tissue from a pool of achenes at the red stage of strawberry fruits

text: Red

text: Fragaria x ananassa

text: Fragaria x ananassa

text: Achene

text: Red achene


Root

text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

characteristic: INSDC last update

text: public

text: Root

text: strawberry

text: Tissue from a pool of strawberry roots

text: Fragaria x ananassa

text: Fragaria x ananassa

text: Root

text: Root


Leaf

text: IFAPA CENTRO DE CHURRIANA (MÁLAGA)

text: public

characteristic: INSDC status

text: Leaf

text: strawberry

text: Tissue from a pool of strawberry leaves

text: Fragaria x ananassa

text: Fragaria x ananassa

text: Leaf

text: Leaf


text: UNIVERSITY OF HELSINKI

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF HELSINKI

text: Mikocheni Agricultural Research Institute

characteristic: collecting institution

text: Deusdedith R. Mbanzibwa

characteristic: collector name

text: Tanzania

characteristic: geographic location (country and/or sea)

text: common bean

characteristic: host common name

text: Phaseolus vulgaris

characteristic: host scientific name

characteristic: host subject id

text: multiisolate

characteristic: isolate

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool HXH8


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

text: public

characteristic: Submitter Id

text: Deusdedith R. Mbanzibwa

text: Tanzania

text: common bean

text: Phaseolus vulgaris

text: multiisolate

text: Phaseolus vulgaris

characteristic: organism

text: Phaseolus vulgaris

text: siRNA sample pool HXH9

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

text: Deusdedith R. Mbanzibwa

text: Tanzania

text: common bean

text: Phaseolus vulgaris

text: multiisolate

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool HXH10


text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2Nicaraguan Institute of Agricultural Technology (CNIAB-INTA)

text: Delfia Marcenaro

text: Nicaragua

text: common bean

text: Phaseolus vulgaris

text: multiisolate

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool MIB396


text: UNIVERSITY OF HELSINKI

text: public

characteristic: SRA accession

characteristic: collecting institution

text: Delfia Marcenaro

characteristic: collector name

text: Nicaragua

text: common bean

text: Phaseolus vulgaris

text: multiisolate

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool SEN46


text: UNIVERSITY OF HELSINKI

text: public

text: Delfia Marcenaro

text: Nicaragua

characteristic: geographic location (country and/or sea)

text: common bean

characteristic: host common name

text: Phaseolus vulgaris

characteristic: host scientific name

text: multiisolate

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool SEN52


characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

tag: Namespace:CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: house mouse

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: liver unclassified nodule 81152G from DEN treated individual 81152. This sample is a unique specimen from this individual.

characteristic: description

text: unclassified

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

characteristic: tissue type

text: DEN

characteristic: treatment agent

characteristic: treatment date

unit: ug/g body weight

characteristic: treatment dose


tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: liver unclassified nodule 80400_m1 from DEN treated individual 80400. This sample is a unique specimen from this individual.

text: unclassified

text: Mus musculus

characteristic: organism

text: Mus musculus

text: male

text: liver

characteristic: title

text: DEN


characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: liver unclassified nodule 84412_m1 from DEN treated individual 84412. This sample is a unique specimen from this individual.

characteristic: description

text: unclassified

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: DEN


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

text: house mouse

text: liver unclassified nodule 86226_m1 from DEN treated individual 86226. This sample is a unique specimen from this individual.

text: unclassified

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: tissue type

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver unclassified nodule 81152A from DEN treated individual 81152. This sample is a unique specimen from this individual.

text: unclassified

text: Mus musculus

characteristic: organism

text: Mus musculus

text: male

text: liver

characteristic: title

text: DEN


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver unclassified nodule 86695_m1 from DEN treated individual 86695. This sample is a unique specimen from this individual.

characteristic: description

text: unclassified

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: DEN


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: liver unclassified nodule 87535_m1 from DEN treated individual 87535. This sample is a unique specimen from this individual.

text: unclassified

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: tissue type

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver unclassified nodule 81152H from DEN treated individual 81152. This sample is a unique specimen from this individual.

text: unclassified

text: Mus musculus

characteristic: organism

text: Mus musculus

text: male

text: liver

characteristic: title

text: DEN


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver unclassified nodule 81152C from DEN treated individual 81152. This sample is a unique specimen from this individual.

characteristic: description

text: unclassified

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: DEN


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: liver unclassified nodule 81151_m1 from DEN treated individual 81151. This sample is a unique specimen from this individual.

text: unclassified

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: tissue type

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver unclassified nodule 81152B from DEN treated individual 81152. This sample is a unique specimen from this individual.

text: unclassified

text: Mus musculus

characteristic: organism

text: Mus musculus

text: male

text: liver

characteristic: title

text: DEN


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver unclassified nodule 81152F from DEN treated individual 81152. This sample is a unique specimen from this individual.

characteristic: description

text: unclassified

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: DEN


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: liver unclassified nodule 81152D from DEN treated individual 81152. This sample is a unique specimen from this individual.

text: unclassified

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: tissue type

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver unclassified nodule 80627_m1 from DEN treated individual 80627. This sample is a unique specimen from this individual.

text: unclassified

text: Mus musculus

characteristic: organism

text: Mus musculus

text: male

text: liver

characteristic: title

text: DEN


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver unclassified nodule 81152I from DEN treated individual 81152. This sample is a unique specimen from this individual.

characteristic: description

text: unclassified

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: DEN


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University Hospital Galway

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-CHECKLIST

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-

characteristic: organism

text: Subsp. I

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

characteristic: INSDC center name

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Kentucky

text: Kentucky

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC first public

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Anatum

text: Anatum

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Nima

text: Nima

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Weltevreden

text: Weltevreden

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Infantis

text: Infantis

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: organism

text: Typhimurium

text: Subsp. I


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Schizonts sorted 29/02/16

characteristic: sample description

text: Plasmodium falciparum

characteristic: title


text: Plasmodium berghei

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Schizonts sorted 29/02/16

text: Plasmodium berghei


text: Plasmodium falciparum

characteristic: ENA-CHECKLIST

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Gametocytes sorted 08/04/16

text: Plasmodium falciparum


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Schizonts

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Schzionts

text: Plasmodium berghei


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Apapa

text: Apapa

characteristic: serovar

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Agona

text: Agona

text: Subsp. I

characteristic: sub species


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. Enterica

characteristic: organism

text: Salmonella enterica subsp. Enterica

text: Unnamed

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Tennessee

text: Tennessee

text: Subsp. I

characteristic: title


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Bredeney

text: Bredeney

text: Subsp. I


text: Universite de neuchatel

text: public

tag: Namespace:Universite de neuchatel

text: Arabidopsis lyrata

characteristic: common name

text: Nuclear genome of A. lyrata population located in Pennsylvania

characteristic: description

text: Arabidopsis lyrata subsp. lyrata

text: Arabidopsis lyrata subsp. lyrata


characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

characteristic: serovar

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Kentucky

text: Subsp. I

characteristic: sub species


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Java

characteristic: organism

text: Java

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Stanley

text: Stanley

text: Subsp. I

characteristic: title


characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Enteritidis

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Agama

text: Agama

characteristic: serovar

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Braenderup

text: Braenderup

text: Subsp. I


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Manhattan

text: Manhattan

text: Subsp. I

characteristic: sub species


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Chester

characteristic: organism

text: Chester

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Newport

text: Newport

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

text: Human

text: Typhimurium

text: Subsp. I

characteristic: title


text: University Hospital Galway

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Bovismorbificans

text: Bovismorbificans

text: Subsp. I


text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

characteristic: collecting institution

text: not provided

characteristic: collector name

text: feces metagenome

characteristic: common name

text: Metagenomic study on swine feces from swine with diarrhea caused by viral PEDV infection

characteristic: description

text: Germany

text: Baden-Wuerttemberg

characteristic: geographic location (region and locality)

text: domestic

characteristic: host behaviour

text: swine

characteristic: host common name

text: domestic:indoor farm

characteristic: host habitat

text: diseased

characteristic: host health state

text: Sus scrofa

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: feces metagenome

text: feces

characteristic: isolation source host associated

text: feces metagenome

text: farm sample

characteristic: sample capture status

text: feces metagenome

text: FLI swine feces pilot

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: not provided

text: feces metagenome

text: Germany

characteristic: geographic location (country and/or sea)

text: domestic

text: swine

text: domestic:indoor farm

text: diseased

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: not provided

text: feces metagenome

characteristic: isolate

text: feces

text: feces metagenome

characteristic: organism

text: farm sample

text: feces metagenome

text: FLI swine feces pilot

characteristic: title


text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

characteristic: collecting institution

text: not provided

characteristic: collector name

text: feces metagenome

characteristic: common name

characteristic: description

text: Germany

text: domestic

characteristic: host behaviour

text: swine

characteristic: host common name

text: domestic:indoor farm

characteristic: host habitat

text: diseased

characteristic: host health state

text: Sus scrofa

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: feces metagenome

text: feces

characteristic: isolation source host associated

text: feces metagenome

text: farm sample

text: feces metagenome

text: FLI swine feces pilot

text: PEDV/GER/L00919- K17_14-02/2014


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: not provided

text: feces metagenome

text: Germany

characteristic: geographic location (country and/or sea)

text: Bayern

characteristic: geographic location (region and locality)

text: domestic

text: swine

text: domestic:indoor farm

text: diseased

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: not provided

text: feces metagenome

text: feces

text: feces metagenome

text: farm sample

characteristic: sample capture status

text: feces metagenome

text: FLI swine feces pilot

characteristic: virus identifier


text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

characteristic: collecting institution

text: not provided

characteristic: collector name

text: feces metagenome

characteristic: common name

characteristic: description

text: Germany

text: Baden-Wurttemberg

text: domestic

characteristic: host behaviour

text: swine

characteristic: host common name

text: domestic:indoor farm

characteristic: host habitat

text: diseased

characteristic: host health state

text: Sus scrofa

text: not provided

characteristic: host sex

text: not provided

text: feces metagenome

characteristic: isolate

text: feces

text: feces metagenome

characteristic: organism

text: farm sample

text: feces metagenome

text: FLI swine feces pilot

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: not provided

text: feces metagenome

text: Germany

characteristic: geographic location (country and/or sea)

text: Lower Saxony

characteristic: geographic location (region and locality)

text: domestic

text: swine

text: domestic:indoor farm

text: diseased

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: feces metagenome

text: feces

characteristic: isolation source host associated

text: feces metagenome

text: farm sample

text: feces metagenome

text: FLI swine feces pilot


text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

characteristic: collecting institution

text: not provided

characteristic: collector name

text: feces metagenome

characteristic: common name

characteristic: description

text: Germany

text: Schleswig-Holstein

text: domestic

characteristic: host behaviour

text: swine

characteristic: host common name

text: domestic:indoor farm

characteristic: host habitat

text: diseased

characteristic: host health state

text: Sus scrofa

text: not provided

characteristic: host sex

text: not provided

text: feces metagenome

characteristic: isolate

text: feces

text: feces metagenome

text: farm sample

characteristic: sample capture status

text: feces metagenome

text: FLI swine feces pilot

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: not provided

text: feces metagenome

text: Germany

characteristic: geographic location (country and/or sea)

text: North Rhine-Westphalia

characteristic: geographic location (region and locality)

text: domestic

text: swine

text: domestic:indoor farm

text: diseased

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: not provided

text: feces metagenome

text: feces

text: feces metagenome

characteristic: organism

text: farm sample

text: feces metagenome

text: FLI swine feces pilot

characteristic: title


text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

characteristic: collecting institution

text: not provided

characteristic: collector name

text: feces metagenome

characteristic: common name

characteristic: description

text: Germany

text: Bavaria

text: domestic

characteristic: host behaviour

text: swine

characteristic: host common name

text: domestic:indoor farm

characteristic: host habitat

text: diseased

characteristic: host health state

text: Sus scrofa

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: feces metagenome

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: feces metagenome

text: farm sample

text: feces metagenome

text: FLI swine feces pilot


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: not provided

text: feces metagenome

text: Germany

characteristic: geographic location (country and/or sea)

text: Thuringia

characteristic: geographic location (region and locality)

text: domestic

text: swine

text: domestic:indoor farm

text: diseased

text: Sus scrofa

characteristic: host scientific name

text: not provided

text: not provided

text: feces metagenome

text: feces

text: feces metagenome

text: farm sample

characteristic: sample capture status

text: feces metagenome

text: FLI swine feces pilot

characteristic: virus identifier