characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Montoya

characteristic: contributor

text: United Kingdom

characteristic: country

characteristic: depth

text: sponge tissue from Raspailia ramosa UK

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

characteristic: emp status

text: marine benthic biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: organic material feature

text: United Kingdom

text: sponges

text: Raispailia hispida

text: Healthy

characteristic: host status

characteristic: longitude

text: typo

text: sponge metagenome

text: Missing: Not provided

text: Haverford college

text: FALSE

text: Missing: Not provided

text: TRUE

text: Missing: Not provided

text: sponge tissue

characteristic: sample type

text: sponge metagenome

text: SpongeMicrobiome Project

text: Missing: Not provided


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Erwin/Lopez-Legentil

text: Spain

text: 1l Seawater Sample (inside cave)

text: TRUE

text: EMP

text: ocean biome

text: ocean water

text: water

text: ocean water

text: Spain

characteristic: geo loc name

text: sea water

characteristic: host common name

text: marine metagenome

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: lane

characteristic: latitude

text: Missing: Not provided

characteristic: life stage

text: marine metagenome

characteristic: organism

text: Missing: Not provided

characteristic: ph

text: FALSE

text: Missing: Not provided

text: TRUE

characteristic: public

text: Missing: Not provided

characteristic: salinity ppt

text: seawater

text: Agia Pelagia, Heraklion Crete

characteristic: sampling site

text: marine metagenome

characteristic: study id

characteristic: title

text: SpongeMicrobiome Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Erwin/Lopez-Legentil

characteristic: contributor

text: Spain

characteristic: country

characteristic: depth

text: 1l Seawater Sample (inside cave)

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

characteristic: emp status

text: ocean biome

characteristic: env biome

text: ocean water

characteristic: env feature

text: water

characteristic: env package

text: ocean water

text: Spain

text: sea water

text: marine metagenome

text: Missing: Not provided

characteristic: longitude

text: marine metagenome

text: Missing: Not provided

text: FALSE

text: Missing: Not provided

text: TRUE

text: Missing: Not provided

text: seawater

characteristic: sample type

text: Agia Pelagia, Heraklion Crete

text: marine metagenome

text: SpongeMicrobiome Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Erwin/Lopez-Legentil

text: Spain

text: 1l Seawater Sample (outside cave)

text: TRUE

text: EMP

text: ocean biome

text: ocean water

text: water

text: ocean water

text: Spain

characteristic: geo loc name

text: sea water

characteristic: host common name

text: marine metagenome

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: lane

characteristic: latitude

text: Missing: Not provided

characteristic: life stage

text: marine metagenome

characteristic: organism

text: Missing: Not provided

characteristic: ph

text: FALSE

text: Missing: Not provided

text: TRUE

characteristic: public

text: Missing: Not provided

characteristic: salinity ppt

text: seawater

text: Agia Pelagia, Heraklion Crete

characteristic: sampling site

text: marine metagenome

characteristic: study id

text: SpongeMicrobiome Project

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Montoya

characteristic: contributor

text: Spain

characteristic: country

characteristic: depth

text: 1l Seawater Sample (outside cave)

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

characteristic: emp status

text: ocean biome

characteristic: env biome

text: ocean water

characteristic: env feature

text: water

characteristic: env package

text: ocean water

text: Spain

text: sea water

text: marine metagenome

text: Healthy

characteristic: host status

text: Missing: Not provided

characteristic: longitude

text: marine metagenome

text: Missing: Not provided

text: FALSE

text: Missing: Not provided

text: TRUE

text: Missing: Not provided

text: seawater

characteristic: sample type

text: Agia Pelagia, Heraklion Crete

text: marine metagenome

text: SpongeMicrobiome Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Montoya

text: United Kingdom

text: sponge tissue from Stelligera stuposa UK

text: TRUE

text: EMP

text: marine benthic biome

text: animal-associated habitat

text: host-associated

text: organic material feature

text: United Kingdom

characteristic: geo loc name

text: sponges

characteristic: host common name

text: Stelligera stuposa

characteristic: host scientific name

text: Healthy

characteristic: host subject id

characteristic: host taxid

characteristic: lane

characteristic: latitude

characteristic: life stage

text: sponge metagenome

characteristic: organism

text: Missing: Not provided

characteristic: ph

text: Haverford college

text: FALSE

text: Missing: Not provided

text: TRUE

characteristic: public

text: Missing: Not provided

characteristic: salinity ppt

text: sponge tissue

characteristic: sampling site

text: sponge metagenome

characteristic: study id

text: SpongeMicrobiome Project

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Montoya

characteristic: contributor

text: United Kingdom

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

characteristic: emp status

text: marine benthic biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: organic material feature

text: United Kingdom

text: sponges

text: Stelligera stuposa

text: Healthy

characteristic: host status

characteristic: longitude

text: sponge metagenome

text: Missing: Not provided

text: Haverford college

text: FALSE

text: Missing: Not provided

text: TRUE

text: Missing: Not provided

text: sponge tissue

characteristic: sample type

text: sponge metagenome

text: SpongeMicrobiome Project

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Montoya

text: United Kingdom

text: sponge tissue from Suberites carnosus UK

text: TRUE

text: EMP

text: marine benthic biome

text: animal-associated habitat

text: host-associated

text: organic material feature

text: United Kingdom

characteristic: geo loc name

text: sponges

characteristic: host common name

text: Suberites carnosus

characteristic: host scientific name

text: Healthy

characteristic: host subject id

characteristic: host taxid

characteristic: lane

characteristic: latitude

characteristic: life stage

text: sponge metagenome

characteristic: organism

text: Missing: Not provided

characteristic: ph

text: Haverford college

text: FALSE

text: Missing: Not provided

text: TRUE

characteristic: public

text: Missing: Not provided

characteristic: salinity ppt

text: sponge tissue

characteristic: sampling site

text: sponge metagenome

characteristic: study id

characteristic: title

text: SpongeMicrobiome Project

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Montoya

characteristic: contributor

text: United Kingdom

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

characteristic: emp status

text: marine benthic biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: organic material feature

text: United Kingdom

text: sponges

text: Suberites carnosus

text: Healthy

characteristic: host status

characteristic: longitude

text: sponge metagenome

text: Missing: Not provided

text: Haverford college

text: FALSE

text: Missing: Not provided

text: TRUE

text: Missing: Not provided

text: sponge tissue

characteristic: sample type

text: sponge metagenome

text: SpongeMicrobiome Project

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Montoya

text: United Kingdom

text: sponge tissue from Tethya citrina UK

text: TRUE

text: EMP

text: marine benthic biome

text: animal-associated habitat

text: host-associated

text: organic material feature

text: United Kingdom

characteristic: geo loc name

text: sponges

characteristic: host common name

text: Tethya citrina

characteristic: host scientific name

text: Healthy

characteristic: host subject id

characteristic: host taxid

characteristic: lane

characteristic: latitude

text: Missing: Not provided

characteristic: life stage

text: marine metagenome

characteristic: organism

text: Missing: Not provided

characteristic: ph

text: FALSE

text: Missing: Not provided

text: TRUE

characteristic: public

text: Missing: Not provided

characteristic: salinity ppt

text: seawater

text: Agia Pelagia, Heraklion Crete

characteristic: sampling site

text: marine metagenome

characteristic: study id

text: SpongeMicrobiome Project

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Montoya

characteristic: contributor

text: United Kingdom

characteristic: country

characteristic: depth

text: sponge tissue from Tethya citrina UK

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

characteristic: emp status

text: marine benthic biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: organic material feature

text: United Kingdom

text: sponges

text: Tethya citrina

text: Healthy

characteristic: host status

text: Adult

characteristic: longitude

text: sponge metagenome

text: Missing: Not provided

text: Institute of Marine Sciences (ICM-CSIC)

text: FALSE

text: Missing: Not provided

text: TRUE

text: Missing: Not provided

text: sponge tissue

characteristic: sample type

text: Skomer islands

text: sponge metagenome

text: Haplosclerida

text: SpongeMicrobiome Project

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Montoya

text: United Kingdom

text: sponge tissue from Thymosia spinosa UK

text: TRUE

text: EMP

text: marine benthic biome

text: animal-associated habitat

text: host-associated

text: organic material feature

text: United Kingdom

characteristic: geo loc name

text: sponges

characteristic: host common name

text: Thymosia sp.

characteristic: host scientific name

text: Healthy

characteristic: host subject id

characteristic: host taxid

characteristic: lane

characteristic: latitude

text: Adult

characteristic: life stage

text: sponge metagenome

characteristic: organism

text: Missing: Not provided

characteristic: ph

text: Institute of Marine Sciences (ICM-CSIC)

text: FALSE

text: Missing: Not provided

text: TRUE

characteristic: public

text: Missing: Not provided

characteristic: salinity ppt

text: sponge tissue

text: Skomer islands

characteristic: sampling site

text: sponge metagenome

text: Haplosclerida

characteristic: study id

characteristic: title

text: SpongeMicrobiome Project

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Montoya

characteristic: contributor

text: United Kingdom

characteristic: country

characteristic: depth

text: sponge tissue from Thymosia spinosa UK

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

characteristic: emp status

text: marine benthic biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: organic material feature

text: United Kingdom

text: sponges

text: Thymosia sp.

text: Healthy

characteristic: host status

text: Adult

characteristic: longitude

text: sponge metagenome

text: Missing: Not provided

text: Institute of Marine Sciences (ICM-CSIC)

text: FALSE

text: Missing: Not provided

text: TRUE

text: Missing: Not provided

text: sponge tissue

characteristic: sample type

text: Cala Montgo1, Spain

text: sponge metagenome

text: Poecilosclerida

text: SpongeMicrobiome Project

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Montoya

text: United Kingdom

text: sponge tissue from Thymosia spinosa UK

text: TRUE

text: EMP

text: marine benthic biome

text: animal-associated habitat

text: host-associated

text: organic material feature

text: United Kingdom

characteristic: geo loc name

text: sponges

characteristic: host common name

text: Thymosia sp.

characteristic: host scientific name

text: Healthy

characteristic: host subject id

characteristic: host taxid

characteristic: lane

characteristic: latitude

text: Adult

characteristic: life stage

text: sponge metagenome

characteristic: organism

text: Missing: Not provided

characteristic: ph

text: Institute of Marine Sciences (ICM-CSIC)

text: FALSE

text: Missing: Not provided

text: TRUE

characteristic: public

text: Missing: Not provided

characteristic: salinity ppt

text: sponge tissue

text: Cala Montgo1, Spain

characteristic: sampling site

text: sponge metagenome

text: Poecilosclerida

characteristic: study id

text: SpongeMicrobiome Project

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Montoya

characteristic: contributor

text: United Kingdom

characteristic: country

characteristic: depth

text: 1l Seawater Sample Wa.UK.1a

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

characteristic: emp status

text: marine benthic biome

characteristic: env biome

text: ocean water

characteristic: env feature

text: water

characteristic: env package

text: ocean water

text: United Kingdom

text: sea water

text: marine metagenome

text: Healthy

characteristic: host status

text: Adult

characteristic: longitude

text: sponge metagenome

text: Missing: Not provided

text: Institute of Marine Sciences (ICM-CSIC)

text: FALSE

text: Missing: Not provided

text: TRUE

text: Missing: Not provided

text: sponge tissue

characteristic: sample type

text: Cala Montgo1, Spain

text: sponge metagenome

text: Poecilosclerida

text: SpongeMicrobiome Project

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Montoya

text: United Kingdom

text: 1l Seawater Sample Wa.UK.2a

text: TRUE

text: EMP

text: marine benthic biome

text: ocean water

text: water

text: ocean water

text: United Kingdom

characteristic: geo loc name

text: sea water

characteristic: host common name

text: marine metagenome

characteristic: host scientific name

text: Healthy

characteristic: host subject id

characteristic: host taxid

characteristic: lane

characteristic: latitude

text: Adult

characteristic: life stage

text: sponge metagenome

characteristic: organism

text: Missing: Not provided

characteristic: ph

text: Institute of Marine Sciences (ICM-CSIC)

text: FALSE

text: Missing: Not provided

text: TRUE

characteristic: public

text: Missing: Not provided

characteristic: salinity ppt

text: sponge tissue

text: Cala Montgo1, Spain

characteristic: sampling site

text: sponge metagenome

text: Poecilosclerida

characteristic: study id

text: SpongeMicrobiome Project

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Montoya

characteristic: contributor

text: United Kingdom

characteristic: country

characteristic: depth

text: 1l Seawater Sample Wa.UK.3a

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

characteristic: emp status

text: marine benthic biome

characteristic: env biome

text: ocean water

characteristic: env feature

text: water

characteristic: env package

text: ocean water

text: United Kingdom

text: sea water

text: marine metagenome

text: Healthy

characteristic: host status

text: Adult

characteristic: longitude

text: sponge metagenome

text: Missing: Not provided

text: Institute of Marine Sciences (ICM-CSIC)

text: FALSE

text: Missing: Not provided

text: TRUE

text: Missing: Not provided

text: sponge tissue

characteristic: sample type

text: Cala Montgo1, Spain

text: sponge metagenome

text: Poecilosclerida

text: SpongeMicrobiome Project

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRDGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF CAMBRDGE

text: human

characteristic: common name

text: Human Yolk Sac

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: yolk sac

characteristic: tissue type

text: HYS

characteristic: title


text: UNIVERSITY OF CAMBRDGE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Human First Trimester Placenta

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: placenta

text: HPT


text: UNIVERSITY OF CAMBRDGE

text: public

text: house mouse

text: Mouse Yolk Sac

text: Mus musculus

text: Mus musculus

text: yolk sac

text: MYS


EsILLUMINA

text: public

text: EsILLUMINA

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: Euclidium syriacum genomic DNA sample for illumina sequencing

text: Euclidium syriacum

text: Euclidium syriacum


Aa-illumina-MP

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: public

text: Aa-illumina-MP

text: gray rockcress

text: Arabis alpina

text: Arabis alpina

text: Arabis alpina genomic DNA sample for illumina mate-pair sequencing


E-MTAB-5311:Sample 1

text: CHALMERS

text: public

text: E-MTAB-5311:Sample 1

text: 24 to 26

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Tumors were excised from mice just after the mice were killed, and put into a cryo-tube and snap frozen in liquid nitrogen RNA was extracted using the Trizol-Chloroform-Isopropanol method: Frozen tumors were manually homogenized to powder using mortar and pestle cooled on dry ice. Tissue, a metal bullet and 1 ml Trizol was added to cool 2 ml eppendorf tubes, and tissue was homogenized in a Qiagen Tissuelyser at 25 Hz for 2-3 x 1,5 min, and incubated 5 min at RT. 200 ul Chloroform was added to all samples and shaken. Samples were incubated for 3-5 min at RT to ensure dissociation of nucleic acids from protein complexes, and spun at 12,000 g for 15 min, 4 ºC. The upper clear aqueous phases (approx. 450 ul) were transferred to new PCR clean tubes. This is the RNA. RNA was precipitated with 0.45 ml isopropyl alcohol (1:1 reaction) at RT, and samples were vortexed for 5-10 sec and incubated 10 min at RT. Samples were spun at 12000 g, 15 min, 4 ºC, and placed in -20C cold blocks. The aqueous phases were poured out, and pellets were washed with 900uL (-20C chilled) 75% ethanol and spun at 8000 g, 5 min, 4ºC. This step was repeated once. Pellets were dried by placing tubes horizontally on a rack so that the tops “hung off” the edge of the rack and the air flow from the hood moved past the open tops of the tubes in a perpendicular manner. Tubes were left for 3-5 minutes until pellets had “just” dried and had NO remaining liquid. Pellets were dissolved in 15-30µl of Ultrapure RNase/DNase free water. Sequencing libraries were prepared from 1μg total RNA using the TruSeq stranded mRNA library preparation kit (Cat# RS- 122-2101/2102, Illumina Inc.) including polyA selection. The library preparation was performed according to the manufacturers’ protocol (#15031047). Library preparation using TruSeq stranded mRNA sample preparation kit is an accredited method.

text: Lewis lung carcinoma

characteristic: disease

text: no access to running wheel

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-5311:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHALMERS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5311:Sample 10

text: 24 to 26

text: ArrayExpress

text: house mouse

text: Lewis lung carcinoma

text: access to running wheel

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: Sample 10


E-MTAB-5311:Sample 11

text: CHALMERS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5311:Sample 11

text: 24 to 26

text: ArrayExpress

text: house mouse

characteristic: common name

text: Lewis lung carcinoma

text: access to running wheel

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: Sample 11

characteristic: title


E-MTAB-5311:Sample 12

text: CHALMERS

text: public

characteristic: SRA accession

text: E-MTAB-5311:Sample 12

characteristic: Submitter Id

text: 24 to 26

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Lewis lung carcinoma

text: access to running wheel

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: Sample 12


E-MTAB-5311:Sample 13

text: CHALMERS

text: public

text: E-MTAB-5311:Sample 13

text: 24 to 26

text: ArrayExpress

text: house mouse

text: Lewis lung carcinoma

characteristic: disease

text: access to running wheel

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 13


E-MTAB-5311:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHALMERS

characteristic: INSDC center name

text: public

text: E-MTAB-5311:Sample 14

text: 24 to 26

text: ArrayExpress

text: house mouse

text: Lewis lung carcinoma

text: access to running wheel

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: Sample 14


E-MTAB-5311:Sample 15

text: CHALMERS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5311:Sample 15

text: 24 to 26

text: ArrayExpress

text: house mouse

characteristic: common name

text: Lewis lung carcinoma

text: access to running wheel

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: Sample 15


E-MTAB-5311:Sample 16

text: CHALMERS

text: public

characteristic: SRA accession

text: E-MTAB-5311:Sample 16

characteristic: Submitter Id

text: 24 to 26

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Lewis lung carcinoma

text: access to running wheel

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: Sample 16

characteristic: title


E-MTAB-5311:Sample 2

text: CHALMERS

text: public

text: E-MTAB-5311:Sample 2

text: 24 to 26

text: ArrayExpress

text: house mouse

characteristic: description

text: Lewis lung carcinoma

characteristic: disease

text: no access to running wheel

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: Sample 2


E-MTAB-5311:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHALMERS

text: public

text: E-MTAB-5311:Sample 3

text: 24 to 26

text: ArrayExpress

text: house mouse

text: Lewis lung carcinoma

text: no access to running wheel

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: strain

text: Sample 3


E-MTAB-5311:Sample 4

text: CHALMERS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5311:Sample 4

text: 24 to 26

text: ArrayExpress

text: house mouse

characteristic: common name

text: Lewis lung carcinoma

text: no access to running wheel

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: Sample 4


E-MTAB-5311:Sample 5

text: CHALMERS

text: public

characteristic: SRA accession

text: E-MTAB-5311:Sample 5

characteristic: Submitter Id

text: 24 to 26

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Lewis lung carcinoma

text: no access to running wheel

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: Sample 5


E-MTAB-5311:Sample 6

text: CHALMERS

text: public

text: E-MTAB-5311:Sample 6

text: 24 to 26

text: ArrayExpress

text: house mouse

characteristic: description

text: Lewis lung carcinoma

characteristic: disease

text: no access to running wheel

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: Sample 6

characteristic: title


E-MTAB-5311:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHALMERS

text: public

text: E-MTAB-5311:Sample 7

text: 24 to 26

text: ArrayExpress

text: house mouse

text: Lewis lung carcinoma

text: no access to running wheel

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: Sample 7


E-MTAB-5311:Sample 8

text: CHALMERS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5311:Sample 8

text: 24 to 26

text: ArrayExpress

text: house mouse

text: Lewis lung carcinoma

text: no access to running wheel

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: strain

text: Sample 8


E-MTAB-5311:Sample 9

text: CHALMERS

text: public

characteristic: SRA accession

text: E-MTAB-5311:Sample 9

characteristic: Submitter Id

text: 24 to 26

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Lewis lung carcinoma

text: access to running wheel

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: Sample 9


E-MTAB-5364:Sample 7

text: public

text: E-MTAB-5364:Sample 7

tag: Namespace:Laboratory of Experimental Cancer Research, Department of Radiation Oncology and Experimental Cancer Research, Ghent University, Ghent, Belgium

text: ArrayExpress

characteristic: cell line

text: human

text: Protocols: COLO320DM cells were seeded and 24 hours later 1.8Gy irradiated. Subsequently, 24h later COLO320DM cells were treated with the secretome of 10x 1.8Gy irradiated CAFs or sham treated CAFs in 0.5% of serum. RNA was isolated 6 hours or 48 hours later. After trypsinization of COLO320DM, a solution of 5 x 106 cells was centrifuged (210 g, 5 min, 4°C) and cell pellets were washed twice with PBS. The supernatant was discarded and the cell pellet was stored at -80°C. RNA was isolated with the miRNeasy kit (Qiagen, Venlo, The Netherlands) Libraries for mRNA sequencing were prepared using the TruSeq stranded mRNA sample prep kit (Illumina). The starting material (100 ng) of total RNA was mRNA enriched using the oligodT bead system (Illumina). The isolated mRNA was subsequently fragmented using enzymatic fragmentation. Then first strand synthesis and second strand synthesis were performed and the double stranded cDNA was purified (Agencourt AMPure XP, Beckman Coulter). The cDNA was end repaired, 3’ adenylated and Illumina sequencing adaptors ligated onto the fragments ends, and the library was purified (Agencourt AMPure XP). The mRNA stranded libraries were pre-amplified with PCR and purified (Agencourt AMPure XP). The libraries size distribution was validated and quality inspected on the 2100 Bioanalyzer

characteristic: description

text: colorectal adenocarcinoma

characteristic: disease

unit: Gray

characteristic: dose

text: X-ray

characteristic: irradiate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 7

type: has member


E-MTAB-5364:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Experimental Cancer Research, Department of Radiation Oncology and Experimental Cancer Research, Ghent University, Ghent, Belgium

text: public

text: E-MTAB-5364:Sample 8

text: ArrayExpress

text: human

text: colorectal adenocarcinoma

text: X-ray

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 8

characteristic: title


E-MTAB-5364:Sample 9

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5364:Sample 9

text: ArrayExpress

text: human

text: colorectal adenocarcinoma

text: X-ray

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 9


E-MTAB-5364:Sample 1

text: public

characteristic: SRA accession

text: E-MTAB-5364:Sample 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: colorectal adenocarcinoma

text: X-ray

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 1


E-MTAB-5364:Sample 2

text: public

text: E-MTAB-5364:Sample 2

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

characteristic: description

text: colorectal adenocarcinoma

text: X-ray

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-5364:Sample 3

text: public

text: E-MTAB-5364:Sample 3

text: ArrayExpress

text: human

text: colorectal adenocarcinoma

characteristic: disease

characteristic: dose

text: X-ray

characteristic: irradiate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 3


E-MTAB-5364:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5364:Sample 10

text: ArrayExpress

text: human

text: colorectal adenocarcinoma

text: X-ray

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 10


E-MTAB-5364:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-5364:Sample 11

text: ArrayExpress

text: human

text: colorectal adenocarcinoma

text: X-ray

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 11

characteristic: title


E-MTAB-5364:Sample 12

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5364:Sample 12

text: ArrayExpress

text: human

text: colorectal adenocarcinoma

text: X-ray

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 12


E-MTAB-5364:Sample 4

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5364:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: human

text: colorectal adenocarcinoma

text: X-ray

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 4


E-MTAB-5364:Sample 5

text: public

text: E-MTAB-5364:Sample 5

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: colorectal adenocarcinoma

text: X-ray

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 5


E-MTAB-5364:Sample 6

text: public

text: E-MTAB-5364:Sample 6

text: ArrayExpress

text: human

characteristic: description

text: colorectal adenocarcinoma

characteristic: disease

characteristic: dose

text: X-ray

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA - Oniris

text: public

tag: Namespace:INRA - Oniris

characteristic: collection date

text: FOOD

characteristic: environment (biome)

text: MEAT

characteristic: environment (feature)

text: CHICKEN MEAT

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: 47°13′02″ Nord

unit: DD

characteristic: geographic location (latitude)

text: 1°33′12″ Ouest

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: food contamination metagenome

text: CHICKMEATMICROB

characteristic: project name

text: food contamination metagenome

characteristic: sequencing method

text: CHICKMEATMICROB


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF GLASGOW

characteristic: Submitter Id

text: Firmicutes bacterium

characteristic: organism

text: Firmicutes bacterium

text: CICRA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Friedrich-Loeffler-Institute

text: public

text: Friedrich-Loeffler-Institut, Greifswald, Germany

characteristic: collecting institution

characteristic: collection date

text: Bernd Hoffmann

characteristic: collector name

text: Zoonotic variegated squirrel 1 bornavirus in different squirrel species in Germany and the Netherlands

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Prevost's squirrel

characteristic: host common name

text: not collected

characteristic: host health state

text: Callosciurus prevostii

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Variegated squirrel bornavirus 1

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

text: Variegated squirrel bornavirus 1

characteristic: virus identifier


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Erasmus Medical Center, Rotterdam, The Netherlands

text: Chantal Reusken

text: Netherlands

text: Prevost's squirrel

text: not collected

text: Callosciurus prevostii

text: not collected

text: Variegated squirrel bornavirus 1

characteristic: organism

text: Variegated squirrel bornavirus 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Friedrich-Loeffler-Institute

text: public

characteristic: collecting institution

characteristic: collection date

text: Bernd Hoffmann

characteristic: collector name

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: variegated squirrel

characteristic: host common name

text: not collected

text: Sciurus variegatoides

text: not collected

text: Variegated squirrel bornavirus 1

text: Variegated squirrel bornavirus 1

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: I do not have this condition

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Daily

text: Not provided

text: Yes

text: true

text: false

text: true

text: false

text: true

text: true

characteristic: allergic to i have no food allergies that i know of

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: I have not taken antibiotics in the past year.

text: false

text: Never

text: I do not have this condition

characteristic: asd

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: One

text: I tend to have normal formed stool - Type 3 and 4

text: false

text: I do not have this condition

characteristic: cancer

text: Not provided

characteristic: cancer treatment

text: I do not have this condition

text: true

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Not provided

text: Yes

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 2016-01-14 10:20

text: No

text: No

characteristic: contraceptive

text: Never

text: United Kingdom

characteristic: country

text: United Kingdom

characteristic: country of birth

text: United Kingdom

text: false

text: Not sure, but I use some form of deodorant/antiperspirant

text: Not provided

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: true

text: I am right handed

text: Well

text: Not provided

text: Not provided

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Outdoors

text: Primarily infant formula

text: Rarely (less than once/week)

text: Never

text: I have not gotten the flu vaccine in the past year.

text: Never

text: Rarely (less than once/week)

text: I do not have this condition

text: United Kingdom:Unspecified

text: No

text: true

text: centimeters

text: Occasionally (1-2 times/week)

text: Daily

text: human

text: dbde5ff1b42faa4e183944063106e875765c60f20f40f03db41a301905201642bcf9c310b13deb9a957198fc57d9b5cc3f7a5b3ba609e2b1378a2d14bab78c7b

text: I do not have this condition

text: Not provided

text: Not provided

text: Diagnosed by a medical professional (doctor, physician assistant)

text: I do not have this condition

text: false

text: I have lived in my current state of residence for more than a year.

text: 6 months

text: Graduate or Professional degree

text: I do not have this condition

text: Yes

text: false

text: I do not have this condition

text: Daily

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

text: Rarely (less than once/week)

text: Never

text: false

text: true

text: Not provided

text: true

text: false

text: false

text: false

text: false

text: false

text: Occasionally (1-2 times/week)

text: Daily

text: human gut metagenome

text: false

text: true

text: UCSDMI

text: true

text: I do not have this condition

text: Never

text: Occasionally (1-2 times/week)

text: false

text: Rarely (less than once/week)

text: Never

text: true

text: Caucasian

text: Never

text: Regularly (3-5 times/week)

text: One

text: Yes

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Rarely (less than once/week)

text: No

text: male

text: I do not have this condition

text: 6-7 hours

text: Never

text: Yes

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: True

text: True

text: True

text: True

text: True

text: True

text: Never

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: false

text: 11 to 20

text: Daily

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Never

text: Never

text: Never

text: Remained stable

text: kilograms

text: Daily

text: Occasionally (1-2 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Rarely (a few times/month)

text: Not provided

text: No

text: true

text: false

text: false

text: false

text: true

text: false

characteristic: allergic to i have no food allergies that i know of

text: Not provided

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: Year

text: Not provided

text: Daily

text: I do not have this condition

characteristic: asd

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

text: Overweight

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: One

text: false

text: I do not have this condition

text: Not provided

text: false

text: I do not have this condition

text: Not provided

text: Not sure

text: I do not have this condition

characteristic: collection date

text: January

text: Winter

text: 2016-01-14 09:00

text: Not sure

text: No

text: Never

text: United Kingdom

text: United Kingdom

text: United Kingdom

text: false

text: I use deodorant

text: Not provided

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: City

text: Not provided

text: Not provided

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Rarely (a few times/month)

text: Outdoors

text: Primarily breast milk

text: Never

text: Occasionally (1-2 times/week)

text: 6 months

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: United Kingdom:Unspecified

text: No

text: true

text: centimeters

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: human

text: 068a562a571c7780c18bc01510d43976e3264cf2a32d0f3305d0e2a5a14ffc02649c28858498d145858f950f72d3c19113cc1e06678d4539a30491ec58e94149

text: I do not have this condition

text: Not provided

text: Not provided

text: Not provided

text: I do not have this condition

text: false

text: 3 months

text: Some graduate school or professional

text: I do not have this condition

text: Yes

text: false

text: I do not have this condition

text: Regularly (3-5 times/week)

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: Daily

text: Never

text: false

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Daily

text: Regularly (3-5 times/week)

text: human gut metagenome

text: false

text: false

text: UCSDMI

text: true

text: I do not have this condition

text: Rarely (a few times/month)

text: Rarely (less than once/week)

text: false

text: Occasionally (1-2 times/week)

text: Never

text: true

text: Caucasian

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: Yes

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: False

text: False

text: True

text: True

text: False

text: True

text: Never

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: false

text: More than 30

text: Daily

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Never

text: Never

text: Never

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: false

text: Never

text: Not provided

text: No

text: false

text: false

text: false

text: true

text: false

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

text: Year

text: false

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: I do not have this condition

characteristic: bmi

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Less than one

text: I tend to be constipated (have difficulty passing stool) - Type 1 and 2

text: false

text: I do not have this condition

characteristic: cancer

text: Not provided

characteristic: cancer treatment

text: I do not have this condition

text: false

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Not provided

text: No

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

text: February

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 2016-02-04 23:55

text: Yes

text: No

characteristic: contraceptive

text: Rarely (a few times/month)

text: United Kingdom

characteristic: country

text: United Kingdom

characteristic: country of birth

text: United Kingdom

text: false

text: I do not use deodorant or an antiperspirant

text: Not provided

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: Filtered

text: Not provided

text: Not provided

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Rarely (a few times/month)

text: Indoors

text: Primarily infant formula

text: Never

text: Daily

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: Diagnosed by an alternative medicine practitioner

text: United Kingdom:Unspecified

text: I do not eat gluten because it makes me feel bad

text: true

text: centimeters

text: Never

text: Daily

text: human

text: f4a9c3d671fb55f8fde31fce7a2b6688ffdd3cd08cc88b83403bd04921691fecd55e2b996b0a55f44d7d48635062534c9b2e545ff8387b8236a67fedfd80054f

text: I do not have this condition

text: Not provided

text: Not provided

text: I do not have this condition

text: true

text: 1 year

text: High School or GED equilivant

text: I do not have this condition

text: Yes

text: true

text: I do not have this condition

text: Regularly (3-5 times/week)

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

text: Daily

text: Never

text: false

text: true

text: Not provided

text: false

text: true

text: false

text: false

text: false

text: false

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: false

text: false

text: UCSDMI

text: true

text: I do not have this condition

text: Never

text: Occasionally (1-2 times/week)

text: false

text: Rarely (less than once/week)

text: Rarely (a few times/month)

text: true

text: Caucasian

text: Never

text: Occasionally (1-2 times/week)

text: No

text: Not provided

text: Stool

text: human gut metagenome

text: Never

text: Yes

text: female

text: I do not have this condition

text: 6-7 hours

text: Never

text: No

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: True

text: False

text: True

text: True

text: False

text: True

text: Never

text: Occasionally (1-2 times/week)

text: Daily

text: American Gut Project

text: false

text: 11 to 20

text: Regularly (3-5 times/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Never

text: Never

text: Never

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: false

characteristic: acne medication

text: false

text: I do not have this condition

text: child

characteristic: age cat

characteristic: age years

text: false

characteristic: alcohol consumption

text: Never

text: Not provided

text: No

text: false

text: false

text: false

text: true

text: false

text: false

characteristic: allergic to i have no food allergies that i know of

text: Not provided

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: 6 months

text: false

text: Never

text: I do not have this condition

characteristic: asd

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

text: Underweight

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: One

text: false

text: I do not have this condition

text: Not provided

text: I do not have this condition

text: false

text: I do not have this condition

text: Not provided

text: Yes

text: I do not have this condition

characteristic: collection date

text: January

text: Winter

text: 2016-01-31 11:45

text: Yes

text: No

text: Never

text: United Kingdom

text: United Kingdom

text: United Kingdom

text: true

text: Not provided

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: Well

text: Not provided

text: Not provided

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Rarely (a few times/month)

text: Depends on the season

text: Primarily breast milk

text: Never

text: Never

text: Never

text: Daily

text: I do not have this condition

text: United Kingdom:Unspecified

text: No

text: true

text: centimeters

text: Never

text: Daily

text: human

text: db49a290614a08cfe168b1458a1653dc71540c815250759142b9e456939bc8505310f7857ebbbcc5f187b81228366f1a3f5d078605eef94d12930582cb0531d6

text: I do not have this condition

text: Not provided

text: Not provided

text: I do not have this condition

text: I do not have this condition

text: false

text: 6 months

text: Did not complete high school

text: I do not have this condition

text: Yes

text: false

text: Occasionally (1-2 times/week)

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

text: Rarely (less than once/week)

text: Daily

text: false

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Daily

text: Rarely (less than once/week)

text: human gut metagenome

text: true

text: false

text: UCSDMI

text: true

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: false

text: Rarely (less than once/week)

text: Never

text: true

text: Caucasian

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: Yes

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Rarely (less than once/week)

text: Yes

text: female

text: I do not have this condition

text: 8 or more hours

text: Never

text: No

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: False

text: False

text: False

text: True

text: False

text: True

text: Never

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: false

text: 11 to 20

text: Daily

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

text: Never

text: Never

text: Rarely (a few times/month)

text: Remained stable

text: kilograms

text: Never

text: Daily


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: true

text: Regularly (3-5 times/week)

text: Not provided

text: No

text: false

text: false

text: true

text: false

text: false

text: false

text: Not provided

text: true

text: false

text: false

text: false

text: false

text: I do not have this condition

text: Year

text: true

text: Regularly (3-5 times/week)

text: I do not have this condition

text: Not provided

characteristic: bmi

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Less than one

text: false

text: I do not have this condition

characteristic: cancer

text: Not provided

characteristic: cancer treatment

text: I do not have this condition

text: false

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Not provided

text: Yes

characteristic: chickenpox

characteristic: clinical condition

text: January

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 2016-01-29 07:45

text: Yes

text: No

characteristic: contraceptive

text: Daily

text: United Kingdom

characteristic: country

text: United Kingdom

characteristic: country of birth

text: United Kingdom

text: false

text: Not provided

text: Not provided

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: City

text: Not provided

text: Not provided

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Both

text: Primarily breast milk

text: Never

text: Daily

text: 6 months

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: United Kingdom:Unspecified

text: No

text: true

text: centimeters

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: human

text: c925fd31f547f68fe67ad3a1bfa22b93c9d4d5d422beff93bafbbeb562a5a433a5f5bacc322ea435f36ee0b7b9c041eaf0b60b74e567740e6dbfb8c56790f490

text: Not provided

text: Not provided

text: Not provided

text: I do not have this condition

text: false

text: 1 year

text: Some graduate school or professional

text: I do not have this condition

text: Not provided

text: false

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: Regularly (3-5 times/week)

text: Never

text: true

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: Not provided

text: false

text: UCSDMI

text: true

text: I do not have this condition

text: Rarely (a few times/month)

text: Rarely (less than once/week)

text: false

text: Rarely (less than once/week)

text: Never

text: true

text: Caucasian

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)

text: Not provided

text: Not provided

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: female

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: Yes

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: True

text: False

text: True

text: True

text: False

text: False

text: Never

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: false

text: Less than 5

text: Regularly (3-5 times/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Daily

text: Daily

text: Occasionally (1-2 times/week)

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Rarely (less than once/week)