text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Line 3 replicate 4

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Populus tremula x Populus tremuloides

characteristic: common name

text: Line 3 replicate 5

characteristic: description

text: Populus tremula x Populus tremuloides

characteristic: organism

text: Populus tremula x Populus tremuloides

characteristic: title


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

tag: Namespace:HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: collection date

text: 1 (timepoint) for patient 04_001

text: vagina

characteristic: environment (biome)

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characteristic: environment (feature)

text: vaginal fluid

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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characteristic: human vaginal environmental package

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characteristic: investigation type

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characteristic: INSDC center name

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text: vagina

text: vagina

text: vaginal fluid

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text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: Submitter Id

characteristic: collection date

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characteristic: description

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characteristic: environment (biome)

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characteristic: environment (material)

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text: human-vaginal

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characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: 4 (timepoint) for patient 04_001

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

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characteristic: investigation type

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

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characteristic: INSDC center name

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characteristic: INSDC status

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text: vagina

text: vagina

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text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: Submitter Id

characteristic: collection date

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characteristic: description

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characteristic: environment (biome)

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characteristic: environment (feature)

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characteristic: environment (material)

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: 2 (timepoint) for patient 05_001

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

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characteristic: INSDC center name

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characteristic: INSDC status

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text: 1 (timepoint) for patient 05_012

text: vagina

text: vagina

text: vaginal fluid

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text: human-vaginal

text: metatranscriptome

text: metagenome

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: Submitter Id

characteristic: collection date

text: 2 (timepoint) for patient 05_012

characteristic: description

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characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

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characteristic: environment (material)

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

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text: 1 (timepoint) for patient 06_001

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

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characteristic: investigation type

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

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text: 2 (timepoint) for patient 06_001

text: vagina

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text: vaginal fluid

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: Submitter Id

characteristic: collection date

text: 1 (timepoint) for patient 06_004

characteristic: description

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characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

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characteristic: environment (material)

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: 2 (timepoint) for patient 06_004

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

text: metatranscriptome

characteristic: investigation type

text: metagenome

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text: metagenome

text: Illumina Hiseq

characteristic: sequencing method

text: The vaginal metatranscriptome


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: 3 (timepoint) for patient 06_004

text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: Submitter Id

characteristic: collection date

text: 4 (timepoint) for patient 06_004

characteristic: description

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characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

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characteristic: environment (material)

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: 5 (timepoint) for patient 06_004

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

text: metatranscriptome

characteristic: investigation type

text: metagenome

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

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text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: human-vaginal

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text: metagenome

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

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characteristic: Submitter Id

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characteristic: description

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characteristic: environment (biome)

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characteristic: environment (material)

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text: human-vaginal

text: metatranscriptome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

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text: 1 (timepoint) for patient 06_010

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

text: metatranscriptome

characteristic: investigation type

text: metagenome

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text: Illumina Hiseq

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text: The vaginal metatranscriptome


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

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text: vagina

text: vagina

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text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

text: metagenome

text: Illumina Hiseq

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text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

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characteristic: Submitter Id

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characteristic: environment (biome)

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characteristic: environment (feature)

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text: human-vaginal

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text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

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text: 2 (timepoint) for patient 07_001

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

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characteristic: investigation type

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

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text: public

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text: vagina

text: vaginal fluid

text: Germany

text: human-vaginal

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text: metagenome

text: metagenome

text: Illumina Hiseq

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text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

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characteristic: Submitter Id

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text: 2 (timepoint) for patient 08_003

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characteristic: environment (material)

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text: human-vaginal

text: metatranscriptome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

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text: 1 (timepoint) for patient 08_006

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

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characteristic: investigation type

text: metagenome

characteristic: project name

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text: Illumina Hiseq

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text: The vaginal metatranscriptome


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

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text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

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characteristic: Submitter Id

characteristic: collection date

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characteristic: description

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characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

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characteristic: environment (material)

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text: human-vaginal

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text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

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text: 4 (timepoint) for patient 08_006

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

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characteristic: investigation type

text: metagenome

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text: Illumina Hiseq

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text: The vaginal metatranscriptome


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: human-vaginal

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text: metagenome

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: Submitter Id

characteristic: collection date

text: 1 (timepoint) for patient 13_019

characteristic: description

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characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

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characteristic: environment (material)

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text: human-vaginal

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text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

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text: 2 (timepoint) for patient 13_019

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

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characteristic: investigation type

text: metagenome

characteristic: project name

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text: Illumina Hiseq

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text: The vaginal metatranscriptome


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

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characteristic: SRA accession

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text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

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characteristic: Submitter Id

characteristic: collection date

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characteristic: environment (biome)

text: vagina

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text: human-vaginal

text: metatranscriptome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

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characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

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text: 5 (timepoint) for patient 13_019

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

text: metatranscriptome

characteristic: investigation type

text: metagenome

characteristic: project name

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text: Illumina Hiseq

characteristic: sequencing method

text: The vaginal metatranscriptome


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

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characteristic: SRA accession

text: 1 (timepoint) for patient 13_022

text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: Submitter Id

characteristic: collection date

text: 2 (timepoint) for patient 13_022

characteristic: description

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characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

text: vaginal fluid

characteristic: environment (material)

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: 1 (timepoint) for patient 15_006

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

text: metatranscriptome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina Hiseq

characteristic: sequencing method

text: The vaginal metatranscriptome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2 (timepoint) for patient 15_006

text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: Submitter Id

characteristic: collection date

text: 1 (timepoint) for patient 17_004

characteristic: description

text: vagina

characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

text: vaginal fluid

characteristic: environment (material)

text: Germany

text: human-vaginal

text: metatranscriptome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

text: The vaginal metatranscriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: 2 (timepoint) for patient 17_004

text: vagina

text: vagina

text: vaginal fluid

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

text: metatranscriptome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina Hiseq

characteristic: sequencing method

text: The vaginal metatranscriptome


BYSTRC female

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUE OF BIOPHYSICS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BYSTRC female

tag: Namespace:INSTITUE OF BIOPHYSICS

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


BYSTRC male

text: INSTITUE OF BIOPHYSICS

text: public

text: BYSTRC male

characteristic: Submitter Id

text: Silene latifolia

characteristic: organism

text: Silene latifolia

text: Silene latifolia ecotypes

characteristic: title


LARZAC female

characteristic: ENA-CHECKLIST

text: INSTITUE OF BIOPHYSICS

text: public

text: LARZAC female

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


LARZAC male

text: INSTITUE OF BIOPHYSICS

text: public

text: LARZAC male

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


LELEKOVICE female

text: INSTITUE OF BIOPHYSICS

text: public

text: LELEKOVICE female

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


LELEKOVICE male

text: INSTITUE OF BIOPHYSICS

text: public

text: LELEKOVICE male

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


LIBICE female

text: INSTITUE OF BIOPHYSICS

text: public

text: LIBICE female

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


LIBICE male

text: INSTITUE OF BIOPHYSICS

text: public

text: LIBICE male

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


TISNOV female

text: INSTITUE OF BIOPHYSICS

text: public

text: TISNOV female

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


TISNOV male

text: INSTITUE OF BIOPHYSICS

text: public

text: TISNOV male

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


TREBICHAVA female

text: INSTITUE OF BIOPHYSICS

text: public

text: TREBICHAVA female

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


TREBICHAVA male

text: INSTITUE OF BIOPHYSICS

text: public

text: TREBICHAVA male

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


U15 female

text: INSTITUE OF BIOPHYSICS

text: public

text: U15 female

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


U15 male

text: INSTITUE OF BIOPHYSICS

text: public

text: U15 male

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


WALLIS female

text: INSTITUE OF BIOPHYSICS

text: public

text: WALLIS female

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


WALLIS male

text: INSTITUE OF BIOPHYSICS

text: public

text: WALLIS male

text: Silene latifolia

text: Silene latifolia

text: Silene latifolia ecotypes


text: Streptococcus agalactiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Streptococcus agalactiae

characteristic: common name

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: subject id


text: Staphylococcus aureus

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Staphylococcus pseudintermedius

text: SC

text: public

text: Staphylococcus pseudintermedius

text: Staphylococcus pseudintermedius

text: Staphylococcus pseudintermedius


text: public

tag: Namespace:ZOOLOGY DEPARTMENT, UNIVERSITY OF OXFORD

text: human

text: Homo sapiens

text: Homo sapiens


text: ZOOLOGY DEPARTMENT, UNIVERSITY OF OXFORD

text: public

text: human

text: Homo sapiens

text: Homo sapiens


RIT-Seq for compound 11

text: University of Dundee

text: public

text: RIT-Seq for compound 11

tag: Namespace:University of Dundee

text: Bloodstream

characteristic: cell type

text: Bloodstream

characteristic: dev stage

text: Trypanosoma brucei brucei TREU927

text: Trypanosoma brucei brucei TREU927

text: Genomewide RNAi library screening for compound 1


name: Genomewide RNAi library screening for compound 21

characteristic: ENA-FIRST-PUBLIC

text: University of Dundee

text: public

text: Trypanosoma brucei brucei TREU927

text: Trypanosoma brucei brucei TREU927


name: Genomewide RNAi library screening for compound 31

characteristic: ENA-LAST-UPDATE

text: University of Dundee

text: public

text: Trypanosoma brucei brucei TREU927

text: Trypanosoma brucei brucei TREU927


characteristic: External Id

text: GSK

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: leukemic cell

text: human

text: Protocols: IMDM 10% HiFBS 1% Glutamax 0.4 Recomb human EPO Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

characteristic: description

text: acute megakaryoblastic leukemia

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

type: has member


text: UMR 1333 DGIMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UMR 1333 DGIMI

characteristic: Submitter Id

text: nematode collected by John M. Webster, bacteria isolated by Eliane Bonifassi

characteristic: collected by

characteristic: collection date

text: mate-paired Illumina (3 kbases) of Xenorhabdus nematophila strain K102, symbiont of the entomopathogenic nematode Steinernema carpocapsae.

text: Canada

characteristic: geographic location (country and/or sea)

text: Steinernema carpocapsae

characteristic: host scientific name

characteristic: isolate

characteristic: isolation source

text: Xenorhabdus nematophila

text: Xenorhabdus nematophila

characteristic: strain

text: Xenorhabdus nematophila K102 sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:AARHUS UNIVERSITY, DEPARTMENT OF MOLECULAR BIOLOGY AND GENETICS

text: Brain sample

text: Adult

characteristic: dev stage

text: Protopterus sp. BOLD:AAL6244

characteristic: organism

text: Protopterus sp. BOLD:AAL6244

text: Brain

characteristic: tissue type

text: Brain

characteristic: title


text: AARHUS UNIVERSITY, DEPARTMENT OF MOLECULAR BIOLOGY AND GENETICS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Liver sample

characteristic: description

text: Adult

text: Protopterus sp. BOLD:AAL6244

text: Protopterus sp. BOLD:AAL6244

text: Liver

text: Liver


text: public

characteristic: Submitter Id

text: Kidney sample

text: Adult

text: Protopterus sp. BOLD:AAL6244

text: Protopterus sp. BOLD:AAL6244

text: Kidney

text: Kidney


text: UNIVERSITY OF BRISTOL

text: public

tag: Namespace:UNIVERSITY OF BRISTOL

text: neuroblastoma

characteristic: cell type

text: human

characteristic: common name

text: RNA-seq of SK-N-BE(2)-C transcriptome after 6H treatment with 100 ng/mL Wnt3a and R-spondin2 as compared to control.

text: Homo sapiens

text: Homo sapiens

text: Vehicle-treated sample (control 1) of neuroblastoma cell line SK-N-BE(2)-C


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BRISTOL

text: public

text: neuroblastoma

text: human

text: Homo sapiens

text: Homo sapiens

text: Vehicle-treated sample (control 2) of neuroblastoma cell line SK-N-BE(2)-C


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BRISTOL

text: public

text: neuroblastoma

text: human

text: Homo sapiens

text: Homo sapiens

text: Wnt3A/R-spondin2-treated sample#1 of neuroblastoma cell line SK-N-BE(2)-C (6H)


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF BRISTOL

text: public

text: neuroblastoma

text: human

text: Homo sapiens

text: Homo sapiens

text: Wnt3A/R-spondin2-treated sample#2 of neuroblastoma cell line SK-N-BE(2)-C (6H)


characteristic: External Id

text: public

text: Gonad sample

text: Adult

text: Protopterus sp. BOLD:AAL6244

text: Protopterus sp. BOLD:AAL6244

text: Gonad

text: Gonad


text: public

text: red-eared slider turtle

text: Brain sample

text: Adult

characteristic: dev stage

text: Trachemys scripta

text: Trachemys scripta

text: Brain

text: Brain


text: public

text: red-eared slider turtle

text: Liver sample

text: Adult

text: Trachemys scripta

characteristic: organism

text: Trachemys scripta

text: Liver

text: Liver


text: public

text: red-eared slider turtle

text: Kidney sample

text: Adult

text: Trachemys scripta

text: Trachemys scripta

text: Kidney

characteristic: tissue type

text: Kidney


text: public

text: red-eared slider turtle

text: Gonad sample

text: Adult

text: Trachemys scripta

text: Trachemys scripta

text: Gonad

text: Gonad

characteristic: title


characteristic: INSDC center name

text: public

text: marine toad

text: Kidney sample

text: Adult

text: Rhinella marina

text: Rhinella marina

text: Kidney

text: Kidney


characteristic: INSDC first public

text: public

text: marine toad

text: Liver sample

text: Adult

text: Rhinella marina

text: Rhinella marina

text: Liver

text: Liver


text: KU LEUVEN

characteristic: INSDC last update

text: public

tag: Namespace:KU LEUVEN

characteristic: collection date

text: house mouse

text: Fecal sample from mouse

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Mus musculus

text: 16S rRNA gene with Illumina Miseq

characteristic: sequencing method

text: Fecal sample MMP9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Michael Hooker Research Center

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Michael Hooker Research Center

characteristic: Submitter Id

text: terrestrial biome

text: microbial mat

text: feces

text: USA

text: host-associated

text: metagenome

text: metagenomes

characteristic: organism

text: metagenomes

text: Illumina sequencing


text: Salmonella enterica

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Salmonella enterica

characteristic: common name

text: Salmonella enterica

text: Salmonella enterica

characteristic: subject id

characteristic: title


text: Streptococcus gordonii

text: SC

text: public

text: Streptococcus gordonii

text: Streptococcus gordonii

text: Streptococcus gordonii


text: Streptococcus pneumoniae

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus oralis

text: SC

text: public

text: Streptococcus oralis

text: Streptococcus oralis

text: Streptococcus oralis


text: Streptococcus salivarius

text: SC

text: public

text: Streptococcus salivarius

text: Streptococcus salivarius

text: Streptococcus salivarius


text: Streptococcus sanguinis

text: SC

text: public

text: Streptococcus sanguinis

text: Streptococcus sanguinis

text: Streptococcus sanguinis


text: Streptococcus parasanguinis

text: SC

text: public

text: Streptococcus parasanguinis

text: Streptococcus parasanguinis

text: Streptococcus parasanguinis


text: public

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Healthcare system

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Wildtype reference strain SA10442 (NCTC 10442, ST-250)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: Australia

text: Homo sapiens

characteristic: host

text: not provided

text: Homo sapiens

text: Healthcare system

text: Staphylococcus aureus

text: Staphylococcus aureus

text: 135C-resistant mutant of reference strain SA10442 (NCTC 10442, ST-250)


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Australia

text: not provided

text: Homo sapiens

text: Healthcare system

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: Wildtype clinical strain SA15913 (ST-239)


characteristic: INSDC last update

text: public

characteristic: collection date

text: Australia

text: not provided

text: Homo sapiens

text: Healthcare system

text: Staphylococcus aureus

text: Staphylococcus aureus

text: 135C-resistant mutant of clinical strain SA15913 (ST-239)

characteristic: title


text: public

text: Australia

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Healthcare system

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Wildtype reference strain SA29213 (ATCC 29213, ST-5)


characteristic: ENA-CHECKLIST

text: public

text: Australia

text: not provided

text: Homo sapiens

characteristic: isolate

text: Healthcare system

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: 135C-resistant mutant of reference strain SA29213 (ATCC 29213, ST-5)


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Australia

text: not provided

text: Homo sapiens

text: Healthcare system

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Wildtype clinical strain SA3784546E (ST-22)


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Australia

text: not provided

text: Homo sapiens

text: Healthcare system

text: Staphylococcus aureus

text: Staphylococcus aureus

text: 135C-resistant mutant of clinical strain SA3784546E (ST-22)


text: Mus Musculus

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: University of Antwerp, Belgium

characteristic: INSDC last update

text: public

tag: Namespace:University of Antwerp, Belgium

characteristic: Submitter Id

characteristic: collection date

text: Finland

text: not provided

text: canis domesticus

text: stomach

text: Helicobacter bizzozeronii

characteristic: organism

text: Helicobacter bizzozeronii

text: Helicobacter bizzozeronii

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF NEW SOUTH WALES

text: public

tag: Namespace:UNIVERSITY OF NEW SOUTH WALES

text: human

text: Homo sapiens

text: Homo sapiens

text: Gastric biopsy


text: Mycobacterium abscessus

characteristic: ArrayExpress-Species

text: SC

text: public

text: Mycobacterium abscessus

text: Mycobacterium abscessus

text: Mycobacterium abscessus


E-MTAB-5840:Sample 1

characteristic: ENA-FIRST-PUBLIC

text: WSBC

text: public

text: E-MTAB-5840:Sample 1

text: ArrayExpress

characteristic: broker name

text: Protocols: 5 x 10^9 cells collected by centrifugation ASW medium, 23degC, 15 umol photons m-2 s-1, 170rpm 3 samples were treated with high light (HL) (210 umol photons m-2 s-1). 3 were kept at the growth irradiance (LL) (15 umol photons m-2 s-1) Total RNA was isolated following Logemann et al. (1987). Briefly, 50ml of Synechococcusvsp. WH7803 was centrifuged at 4000 r.p.m. at 4°C in a Rotanta 46R centrifuge (Hettich,Tuttlingen, Germany) and flash frozen in liquid N2. Pellets were thawed in 1.5 ml of Z buffer (8M guanidinium hydrochloride; 50mM β-mercaptoethanol; 20mM EDTA) at room temperature for 30min. 2 volumes of acidified phenol (pH 4.5) was added and heated to 65˚C for 30min, followed by the addition of chloroform:isoamyl alcohol for 15min. The aqueous phase was transferred to separate microcentrifuge tubes. RNA was precipitated by addition of 1 vol. isopropanol followed by incubation overnight at 4˚C. The tubes were spun at 13,000 r.p.m. in a benchtop centrifuge (Biofuge Pico, Heraeus) at 4˚C for 30mins. The pellet was then washed with 70% (v/v) ethanol and further centrifuged for 15min. Pellets were resuspended in 50ml H20. DNA was removed using the TURBO DNA-freeTM kit(Ambion®/Life Technologies, Carlsbad, U.S.A.) following the manufacturer’s instructions. gDNA contamination was tested by PCR. Any samples that yielded a PCR product were further treated using the TURBO DNA-freeTM kit. ScriptSeq v2.0

characteristic: description

text: Synechococcus spp. WH7803

characteristic: host

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Sample 1


E-MTAB-5840:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WSBC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-5840:Sample 2

text: ArrayExpress

text: Synechococcus spp. WH7803

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Sample 2


E-MTAB-5840:Sample 3

text: WSBC

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5840:Sample 3

text: ArrayExpress

text: Synechococcus spp. WH7803

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Sample 3


E-MTAB-5840:Sample 4

text: WSBC

characteristic: INSDC last update

text: public

text: E-MTAB-5840:Sample 4

text: ArrayExpress

text: Synechococcus spp. WH7803

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Sample 4


E-MTAB-5840:Sample 5

text: WSBC

text: public

text: E-MTAB-5840:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: Synechococcus spp. WH7803

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Sample 5


E-MTAB-5840:Sample 6

text: WSBC

text: public

text: E-MTAB-5840:Sample 6

text: ArrayExpress

text: Synechococcus spp. WH7803

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Synechococcus phage S-PM2

text: Sample 6


text: Cynotilapia afra

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Cynotilapia afra

characteristic: common name

text: Cynotilapia afra

text: Cynotilapia afra

characteristic: subject id


text: Copadichromis trimaculatus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Copadichromis trimaculatus

text: Copadichromis trimaculatus

characteristic: organism

text: Copadichromis trimaculatus

characteristic: title


text: Maylandia aurora

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Maylandia aurora

text: Maylandia aurora

text: Maylandia aurora


text: Copadichromis borleyi

text: SC

text: public

text: Copadichromis borleyi

text: Copadichromis borleyi

text: Copadichromis borleyi


text: Maylandia estherae

text: SC

text: public

text: Maylandia estherae

text: Maylandia estherae

text: Maylandia estherae


text: Copadichromis chrysonotus

text: SC

text: public

text: Copadichromis chrysonotus

text: Copadichromis chrysonotus

text: Copadichromis chrysonotus


text: Maylandia zebra

text: SC

text: public

text: zebra mbuna

text: Maylandia zebra

text: Maylandia zebra


text: Pseudotropheus crabro

text: SC

text: public

text: bumblebee mouthbrooder

text: Pseudotropheus crabro

text: Pseudotropheus crabro


text: ADAC University of Nottingham

text: public

tag: Namespace:ADAC University of Nottingham

text: koala

text: Queensland, M, 5.5kg

characteristic: description

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: Queensland, M, 6.1kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: Queensland, F, 4.8kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: Queensland, F, NA

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: Queensland, M, 5.1kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: Queensland, M, 7.3kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: Queensland, M, 6.3kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: Queensland, F, 5.5kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: Queensland, M, 7.7kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, F, 3.6kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, M, N/A

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, M, 8kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, F, N/A

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, M, 9.95kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, M, 7kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, M, 10kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, F, 6.1kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, M, 9.3kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, M, 5.2kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, N/A, N/A

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, M, 9.9kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, F, 4.75kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, F, 4.46kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: ADAC University of Nottingham

text: public

text: koala

text: South Australia, M, 7.27kg

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: wild koala lymph nodes


text: KU LEUVEN / VIB

text: public

tag: Namespace:KU LEUVEN / VIB

characteristic: collection date

text: human

text: Fecal sample from human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Count Your Blessings

characteristic: project name

text: Homo sapiens

text: 16S rRNA gene with Illumina Miseq

characteristic: sequencing method

text: Study cohort


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KU LEUVEN / VIB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Fecal sample from human

text: Belgium

text: host-associated

text: human-gut

text: metagenome

text: Homo sapiens

text: Count Your Blessings

text: Homo sapiens

text: 16S rRNA gene with Illumina Miseq

text: Study cohort


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BRITISH COLUMBIA

text: public

tag: Namespace:UNIVERSITY OF BRITISH COLUMBIA

characteristic: collection date

characteristic: description

text: Bog Forest

characteristic: environment (biome)

text: Forest soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: soil metagenome

characteristic: organism

text: BIOMES

text: soil metagenome

text: Illumina MiSeq2500 250bp-PE

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bog Forest

text: Forest soil

text: soil

text: Canada

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: BIOMES

characteristic: project name

text: soil metagenome

text: Illumina MiSeq2500 250bp-PE

characteristic: sequencing method

text: soil


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: Cells

characteristic: environment (biome)

text: cell lines

characteristic: environment (feature)

text: culture cells

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

text: Homo sapiens

text: SPATA31 genes involve in aging/longevity in humans

text: Homo sapiens

text: Illumina


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Cells

text: cell lines

text: culture cells

text: Germany

characteristic: geographic location (latitude)

text: human-associated

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: INRA Bordeaux

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INRA Bordeaux

characteristic: description

text: Quercus sp. SW-2017

text: Quercus sp. SW-2017


tag: attribute

text: VETERINARY Faculty

text: public

tag: Namespace:VETERINARY Faculty

characteristic: Submitter Id

text: dog

characteristic: common name

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Dogs from pedigree 1


text: VETERINARY Faculty

text: public

text: dog

text: M

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Dog from pedigree 1


text: VETERINARY Faculty

text: public

text: dog

text: C

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Dog from pedigree 1


text: UNIVERSITA CATTOLICA DEL SACRO CUORE

text: public

tag: Namespace:UNIVERSITA CATTOLICA DEL SACRO CUORE

text: cattle

text: Italy

characteristic: geographic location (country and/or sea)

text: Bos taurus

text: Bos taurus

text: Male

characteristic: sex

text: Italian Holstein bull Exome


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BRITISH COLUMBIA

text: public

characteristic: collection date

text: Bog Forest

characteristic: environment (biome)

text: Forest soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Canada

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: soil metagenome

text: BIOMES

characteristic: project name

text: soil metagenome

text: Illumina HiSeq2500

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Forensic and Scientific Services

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Forensic and Scientific Services

text: Burkholderia cenocepacia

characteristic: organism

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia isolate

characteristic: title


characteristic: ENA-CHECKLIST

text: Ausgem

text: public

characteristic: Submitter Id

characteristic: collection date

text: Ausgem porcine Escherichia coli genomes assembled with A5Miseq v. 20140618

characteristic: description

text: Australia

characteristic: geographic location (country and/or sea)

text: Sus scrofa

characteristic: host scientific name

text: Pig rectal swab

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: Ausgem porcine Escherichia coli genomes


text: Mycobacterium intracellulare

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Mycobacterium intracellulare

characteristic: common name

text: Mycobacterium intracellulare

text: Mycobacterium intracellulare


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS

text: fruit fly

text: embryos st 11

characteristic: dev stage

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster


characteristic: ENA-CHECKLIST

text: MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS

text: public

characteristic: Submitter Id

text: fruit fly

text: embryos st 11

text: Drosophila melanogaster

text: Drosophila melanogaster

characteristic: title


text: public

text: fruit fly

text: embryos st 15

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: H3K27ac ChIP (Diagenode, C15410194, A1862D) corresponding Input A716_Input_st17_EzKD_rep1

characteristic: description

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: ENA-FIRST-PUBLIC

text: public

text: fruit fly

text: H3K27ac ChIP (Diagenode, C15410194, A1862D) corresponding Input A716_Input_st17_EzKD_rep2

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

characteristic: common name

text: H3K27ac ChIP (Diagenode, C15410194, A1862D) corresponding Input A716_Input_st17_EzTS_shifted_rep1

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: H3K27ac ChIP (Diagenode, C15410194, A1862D) corresponding Input A716_Input_st17_EzTS_shifted_rep2

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: H3K27me3 ChIP (Diagenode, C15410195 A1811-001P) corresponding Input A716_Input_c14_EzTS_29_rep1

text: embryos cycle 14/st 5

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: H3K27me3 ChIP (Diagenode, C15410195 A1811-001P) corresponding Input A716_Input_st17_EzTS_shifted_rep1

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: H3K27me3 ChIP (Diagenode, C15410195 A1811-001P) corresponding Input A716_Input_st17_EzTS_shifted_rep2

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: Input for A716_H3K27me3_c14_EzTS_29_rep1

text: embryos cycle 14/ st 5

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: Input for A716_H3K27ac_st17_EzKD_rep1

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: Input for A716_H3K27ac_st17_EzKD_rep2

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: Input for A716_H3K27me3_st17_EzTS_shifted_rep1 and A716_H3K27ac_st17_EzTS_shifted_rep1

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: Input for A716_H3K27me3_st17_EzTS_shifted_rep2 and A716_H3K27ac_st17_EzTS_shifted_rep2

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: fruit fly

text: embryos st 17

text: Drosophila melanogaster

text: Drosophila melanogaster


text: Staphylococcus aureus

characteristic: ArrayExpress-SPECIES

text: uncharacterized patient isolate

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: uncharacterized environmental isolate

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: External Id

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: INSDC center name

text: public

tag: Namespace:INSTITUTE OF BIOCHEMISTRY AND BIOPHYSICS, POLISH ACADEMY OF SCIENCES

characteristic: collection date

text: Metagenomic study performed on single environmental DNA sample sequenced on Ion Proton sequencer

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Isolated DNA was used to prepare barcoded library with Ion Xpress™ Plus Fragment Library Kit (Thermo Fisher) according to manufacturer’s manual. Library was subjected to clonal amplification on Ion One Touch 2 system (Thermo Fisher) using Ion PI™ Template OT2 200 Kit v2 (Thermo Fisher) and sequenced on Ion Proton sequencer using Ion PI™ Sequencing 200 Kit v2 (Thermo Fisher) according to manufacturer’s manual.

characteristic: library construction method

characteristic: library reads sequenced

text: Zhou, J., Bruns, M.A., and Tiedje, J.M. (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62: 316-322

characteristic: nucleic acid extraction

text: metagenome

text: The long-term oxidative weathering of fossil organic matter and sulfide minerals of the subterrestrial Kupferschiefer black shale by lithobiontic microbial community - metaomics field studies

characteristic: project name

unit: g

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Ion Torrent

characteristic: sequencing method

text: DNA sample isolated from microbiological community inhabiting weathered Kupferschiefer black shale


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WAGENINGEN UNIVERSIT

characteristic: Submitter Id

text: adult

characteristic: age

text: Iris de Winter

characteristic: collected by

characteristic: collection date

text: feces metagenome

characteristic: common name

text: Effects of seasonality and previous logging on wild lemur gastrointestinal microbial composition, nematode infections and their interactions

characteristic: description

characteristic: fieldseason

text: Madagascar

characteristic: geographic location (region and locality)

text: Eulemur Fulvus

characteristic: host scientific name

text: fecal material

characteristic: isolation source

text: feces metagenome

characteristic: organism

text: feces metagenome

text: male

characteristic: sex

text: Lemur fecal microbiota

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: adult

text: Iris de Winter

text: feces metagenome

text: Madagascar

characteristic: geographic location (country and/or sea)

text: Kirindy

text: Eulemur Rufifrons

text: fecal material

text: feces metagenome

text: feces metagenome

text: female

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: adult

characteristic: age

text: Iris de Winter

characteristic: collected by

characteristic: collection date

text: feces metagenome

text: Madagascar

text: Kirindy

text: Eulemur Rufifrons

text: fecal material

text: feces metagenome

text: feces metagenome

text: male

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

text: public

text: adult

text: Iris de Winter

text: feces metagenome

characteristic: common name

characteristic: description

characteristic: fieldseason

text: Madagascar

characteristic: geographic location (region and locality)

text: Eulemur Macaco

characteristic: host scientific name

text: fecal material

characteristic: isolation source

text: feces metagenome

characteristic: organism

text: feces metagenome

text: female

text: Lemur fecal microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

text: public

text: adult

text: Iris de Winter

text: feces metagenome

text: Madagascar

text: Eulemur Macaco

text: fecal material

text: feces metagenome

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text: male

characteristic: sex

text: Lemur fecal microbiota

characteristic: title


text: WAGENINGEN UNIVERSIT

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: subadult

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text: Iris de Winter

text: feces metagenome

text: Madagascar

characteristic: geographic location (country and/or sea)

text: Eulemur Macaco

text: fecal material

text: feces metagenome

text: feces metagenome

text: male

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

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text: adult

text: Iris de Winter

characteristic: collected by

characteristic: collection date

text: feces metagenome

characteristic: common name

characteristic: description

characteristic: fieldseason

text: Madagascar

text: Vato

characteristic: geographic location (region and locality)

text: Eulemur Rufifrons

characteristic: host scientific name

text: fecal material

text: feces metagenome

text: feces metagenome

text: male

text: Lemur fecal microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

text: public

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text: Iris de Winter

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characteristic: isolation source

text: feces metagenome

characteristic: organism

text: feces metagenome

text: female

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

text: subadult

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text: Madagascar

text: Vato

text: Eulemur Rufifrons

text: fecal material

text: feces metagenome

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text: female

characteristic: sex

text: Lemur fecal microbiota

characteristic: title


text: WAGENINGEN UNIVERSIT

text: public

text: Iris de Winter

characteristic: collected by

characteristic: collection date

text: feces metagenome

characteristic: common name

characteristic: description

characteristic: fieldseason

text: Madagascar

characteristic: geographic location (country and/or sea)

text: Zombitse

text: Eulemur Rufifrons

text: fecal material

text: feces metagenome

text: feces metagenome

text: Lemur fecal microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSIT

text: public

text: adult

characteristic: age

text: Iris de Winter

text: feces metagenome

text: Madagascar

text: Zombitse

characteristic: geographic location (region and locality)

text: Eulemur Rufifrons

characteristic: host scientific name

text: fecal material

text: feces metagenome

text: feces metagenome

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

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text: public

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text: adult

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text: Eulemur Rufifrons

text: fecal material

characteristic: isolation source

text: feces metagenome

characteristic: organism

text: feces metagenome

text: female

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

text: public

characteristic: Submitter Id

text: adult

text: Iris de Winter

characteristic: collected by

characteristic: collection date

text: feces metagenome

characteristic: common name

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text: Madagascar

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text: fecal material

text: feces metagenome

text: feces metagenome

text: male

characteristic: sex

text: Lemur fecal microbiota

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSIT

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characteristic: age

text: Iris de Winter

text: feces metagenome

characteristic: fieldseason

text: Madagascar

characteristic: geographic location (country and/or sea)

text: Zombitse

text: Eulemur Rufifrons

text: fecal material

text: feces metagenome

text: feces metagenome

text: female

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Iris de Winter

text: feces metagenome

text: Madagascar

characteristic: geographic location (region and locality)

text: Eulemur Macaco

characteristic: host scientific name

text: fecal material

text: feces metagenome

text: feces metagenome

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

text: public

characteristic: Submitter Id

text: subadult

text: Iris de Winter

characteristic: collected by

characteristic: collection date

text: feces metagenome

characteristic: common name

characteristic: description

text: Madagascar

text: Valo

text: Eulemur Rubriventer

text: fecal material

characteristic: isolation source

text: feces metagenome

characteristic: organism

text: feces metagenome

text: Lemur fecal microbiota


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSIT

text: public

text: Iris de Winter

text: feces metagenome

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text: Vato

text: Eulemur Rufifrons

text: fecal material

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text: Lemur fecal microbiota

characteristic: title


text: WAGENINGEN UNIVERSIT

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text: public

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text: Iris de Winter

text: feces metagenome

characteristic: fieldseason

text: Madagascar

characteristic: geographic location (country and/or sea)

text: Vato

text: Eulemur Rubriventer

text: fecal material

text: feces metagenome

text: feces metagenome

text: female

characteristic: sex

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: adult

text: Iris de Winter

characteristic: collected by

characteristic: collection date

text: feces metagenome

text: Madagascar

text: Vato

characteristic: geographic location (region and locality)

text: Eulemur Rubriventer

characteristic: host scientific name

text: fecal material

text: feces metagenome

text: feces metagenome

text: male

text: Lemur fecal microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WAGENINGEN UNIVERSIT

text: public

text: adult

text: Iris de Winter

text: feces metagenome

characteristic: common name

characteristic: description

text: Madagascar

text: Andasibe

text: Eulemur Fulvus

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characteristic: isolation source

text: feces metagenome

characteristic: organism

text: feces metagenome

text: Lemur fecal microbiota


characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

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text: public

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characteristic: age

text: Iris de Winter

text: feces metagenome

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text: Eulemur Fulvus

text: fecal material

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text: feces metagenome

text: female

text: Lemur fecal microbiota

characteristic: title


text: WAGENINGEN UNIVERSIT

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: adult

text: Iris de Winter

characteristic: collected by

characteristic: collection date

text: feces metagenome

text: Madagascar

characteristic: geographic location (country and/or sea)

text: Andasibe

text: Eulemur Fulvus

text: fecal material

text: feces metagenome

text: feces metagenome

text: male

characteristic: sex

text: Lemur fecal microbiota


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: WAGENINGEN UNIVERSIT

text: public

text: Iris de Winter

text: feces metagenome

characteristic: common name

characteristic: description

text: Madagascar

text: Andasibe

characteristic: geographic location (region and locality)

text: Eulemur Fulvus

characteristic: host scientific name

text: fecal material

text: feces metagenome

text: feces metagenome

text: Lemur fecal microbiota


characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

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characteristic: isolation source

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characteristic: organism

text: feces metagenome

text: female

text: Lemur fecal microbiota


text: WAGENINGEN UNIVERSIT

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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text: Iris de Winter

characteristic: collected by

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text: feces metagenome

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text: Madagascar

text: Andasibe

text: Eulemur Fulvus

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text: feces metagenome

text: feces metagenome

text: male

text: Lemur fecal microbiota

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: WAGENINGEN UNIVERSIT

text: public

text: adult

text: Iris de Winter

text: feces metagenome

characteristic: common name

characteristic: description

text: Madagascar

characteristic: geographic location (country and/or sea)

text: Vohi

text: Eulemur Rubriventer

text: fecal material

text: feces metagenome

text: feces metagenome

text: female

characteristic: sex

text: Lemur fecal microbiota


characteristic: External Id

text: WAGENINGEN UNIVERSIT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

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