characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Muenster Institute for Evolution and Biodiversity (IEB) Animal Evolutionary Ecology Group

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: Protocols: --- Sampling took place at 3, 6, 12, and 24 hour post-confrontation start, where 50 larvae were pooled for one biological replicate collected from 5 independent dishes (balanced design with 10 larvae per dish). Only actively moving larvae were collected and sampling order was randomized. Larvae were snap frozen in liquid nitrogen. --- Fly population: The Drosophila melanogaster fly stock used originates from a population established in 2006 from 113 isofemale lines. Flies were collected in the surrounding of Kiel, North Germany. Since then the population has been kept under moderate larval densities on a Drosophila culture medium (DCM) composed of 62.5g yeast (Leiber GmbH Bramsche, Germany), sugar, and cornmeal, 12.5g Agar-Agar Kobe I, and 1L purified water. Eclosed flies of separate breeding bottles were brought together in one population box with several thousand flies and water and food supply. --- Preparation sterile larvae: Flies were allowed to lay eggs on breeding substrate. Egg were washed down from the substrate and treated with 12% sodium-hypochlorite for 10 minutes, rinsed with autoclaved water and placed on sterile water-Agar, containing antibiotics (per liter Agar: 12.5g Agar-Agar Kobe I, 3g Nipagin and 1g Chloramphenicol in 20mL 96% denaturated Ethanol). Petri dishes were equipped with an opening covered with 50µm gauze to enable ventilation and incubated over night at 25°C and darkness. --- Fungal colonies/conidia: Aspergillus nidulans colonies were grown on malt-extract agar (30g malt extract, 5g peptone, 20g Agar-Agar Kobe I, filed to 1L with purified water; autoclaved) and incubated at 25°C for approx. a week. Conidia were then washed from colonies with saline-solution (8.6g NaCl, 300mg KCl and CaCl2, 1mL Tween80®, filled to 1L with purified water; autoclaved) and stored at 4°C. The A. nidulans strain RDIT2.3 and RJW 46.4 were used as wild type and mutant strain respectively. --- Drosophila culture medium (DCM) composed of 62.5g yeast (Leiber GmbH Bramsche, Germany), sugar, and cornmeal, 12.5g Agar-Agar Kobe I, and 1L purified water was boiled, autoclaved at 121°C for 25 minutes, and 4 mL filled into Petri dishes (35 mm diameter) under sterile conditions. Petri dishes for control- (CO), wild type- (WT) and mutant-strain-confrontations (LA) were pre-treated with 50µL Acetone, which were allowed to evaporate for approx. 15 minutes. Fungal colonies were inoculated by placing a 1µL droplet of saline-solution in the middle of the substrate, containing 1000 conidia of the wild type or ∆laeA-mutant (titer adjusted using haemocytometer Neubauer improved 0.1mm depth). Units for mycotoxin confrontations (ST) were treated with 50µL Acetone containing 2µg sterigmatocystin (Sigma Aldrich) each. After approx. 15 minutes for evaporation 1µL sterile saline-solution was placed on the substrate. Units were incubated at 25°C and darkness for 3 days. Then, 15 sterile first instar larvae (see growth protocol) were transferred to each confrontation unit with autoclaved fine brushes. To prevent larvae from leaving/moving between dishes yet enable ventilation, dish opening was covered with a layer of autoclaved paper towel and closed with Petri dish lid. --- 800 µL Trizol® were added and larvae tissue disrupted in BashingBead lysis tubes (2.0mm, ZYMO) for 2 x 30 sec. (30’000beads/min), chilled on ice between runs. Trizol® volume was filed up to 1.0mL and company instructions followed. 70% ethanol was added and samples loaded on RNA isolation columns (RNeasy mini Kit, QIAGEN). Manual instructions were followed. --- totalRNA sequencing library preparation protocol: --- mRNA purification: Vortex beads vigorously in each step to resuspend beads and wash contaminates off Note: you may also start with 100ng mRNA, and directly go to section 2. During this purification the mRNA get extracted twice from the same beads. 1) Dilute 1-10μg total RNA with nuclease-free H2O to 50 μL in a 1.5 mL RNase free non-sticky tube. 2) Heat at 65°C for 5 minutes to disrupt the secondary structures, and place on ice. 3) Meanwhile, vortex well and aliquot 15 μL of oligo(dT) beads into a 1.5mL RNase free non-sticky tube. 4) Wash the beads twice with 100 μL Bead Binding Buffer. 5) Resuspend the beads in 50 μL Bead Binding Buffer, and add the 50 μL of totalRNA sample from step (2); rotate at RT for 5 minutes. 6) Remove the supernatant and wash the beads twice with 200 μL of Bead Washing Buffer. Vortex well to resuspend beads. 7) Add 50 μL of 10mM Tris-HCl to the beads, heat at 80°C for 2 minutes to elute mRNA from the beads. 8) Meanwhile aliquot 50 μL of Bead Binding Buffer to a fresh 1.5mL RNase free non-sticky tube. 9) After heating the beads and mRNA at 80°C for 2 minutes, immediately put on the magnet stand and transfer the supernatant (mRNA) to the binding buffer tube from step (8). 10) Heat the samples in the binding buffer at 65°C for 5 minutes to disrupt the secondary structures, and place on ice. 11) Mean while Wash the beads (same as from previous steps) twice with 200 μL of Bead Washing Buffer (Vortex Well). 12) Add 100 μL of mRNA sample from step (9) to beads and vortex to resuspend beads; rotate at RT for 5 minutes. 13) Remove the supernatant and wash the beads twice with 200 μL of Bead Washing Buffer. Vortex well to resuspend beads. 14) Add 17 μL of 10mM Tris-HCl to the beads, heat at 80°C for 2 minutes to elute mRNA from the beads. Immediately put on the magnet stand and transfer the supernatant (mRNA) to a fresh 200 μL thin wall PCR tube, and there should be ~8-16 μL of mRNA. --- RNA fragmentation Assemble the following mix on ice: 5x First Strand Buffer 4 μL, mRNA (50 ng or variable) x μL, Spiking RNA (optional) y μL, Nuclease free water (8-x-y) μL. Incubate at 94°C for 4 min and DIRECTLY put the tubes on ice. --- First strand synthesis In a PCR strip (0.2 mL) add: Fragmented RNA mix 12μL, Random Primers (3 μg/μL) 1μL, Incubate at 70 °C for 10min and snap cold on ice for 2 min. Add: DTT (100 mM) 2 μL, dNTP (10 mM each: A,C,G & T) 1 μL, RNaseOUT (40U/μL) 0.5 μL, H2O 2.5 μL = total volume 19 μL. Incubate the mix at 25 °C in a thermocycler for 2 min. Add 1 μL of Superscript III (200U/μL) and incubate with the following settings: 25°C for 10min, 50°C for 60 min, 70°C for 15 min, 4°C for hold. --- Second strand synthesis: Add: H2O 62.0 μL, 10x second strand buffer 10.0 μL, dNTPs (25 mM each: A,C,G & U) 4.0 μL, RnaseH (2U/μL) 1.6 μL DNA pol I (10U/ μL) 2.4 μL, total volume 100 μL, Incubate 2 hours at 16°C. Cleanup the sample with 180 μL XP beads and elute in 85 μL EB. --- Clean-up using XP beads: Place XP beads at ROOM temperature for at least 20 minutes before use! Add the appropriate amount of resuspended beads. Incubate at RT for 15 minutes (gently shaking/rotating). Put on magnet for 2 minutes. Remove the supernatant. Wash the beads twice with 200 μL 80% EtOH; Keep the tubes on the magnet, incubate each time for 30 secs. Remove the 80% EtOH and dry the beads for 15 minutes at RT. Resuspend the beads in the appropriate μL EB by pipetting. Incubate at RT for 2 minutes. Place the tube on the magnet for 2 min. Transfer the supernatant to a new tube --- End repair the dsDNA fragments: Add: dsDNA 85 μL, NEBNext End Repair Reaction Buffer (10X) 10 μL, NEBNext End Repair Enzyme Mix 5 μL total volume 100 μL, → Incubate at 20°C for 30 min. Cleanup with 160 μL XP beads and elute in 42 μL EB. --- A-tailing of the dsDNA fragments: Add: DNA sample from End repair 42 μL, NEBNext dA-Tailing Reaction Buffer (10X) 5 μL, Klenow Fragment (3' to 5' exo minus) 3 μL = total volume 50 μL. → Incubate at 37°C for 30 min. Cleanup with 90 μL XP beads and elute in 32.5 μL EB. ---- Adapter Ligation: Add: DNA sample from A-tailing 32.5 μL, Quick Ligation Reaction Buffer (5X) 10 μL, Adapter Oligo mix-with index 2.5 μL Quick T4 DNA Ligase 5.0 μL = total volume 50 μL. → Incubate at 20°C for 15 min. Clean-up the Ligated DNA with 50 μL XP beads and elute in 50 μL EB. Re-clean-up this with 50 μL XP beads and resuspend in 19 μL EB. --- User digest & Library pre-amplification: PCR components: Ligated DNA 19 μL, USER enzyme 1.0 μL, Primer cocktail 5.0 μL, 2x PCR master mix 25 μL = total volume 50 μL. PCR cyle: 37°C for 30 minutes (USER digest), 98°C for 30 secs, 15 cycles: 98°C for 10 secs, 60°C for 30 secs, 72°C for 30 secs, 72°C for 5 min, Hold at 4°C. Clean-up the PCR products with 50 μL XP beads and elute in 11 μL EB. Check the library on a High-sensitivity DNA chip.

characteristic: description

text: first instar larva stage

characteristic: developmental stage

text: Aspergillus nidulans mutant laeA

characteristic: growth condition

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Muenster Institute for Evolution and Biodiversity (IEB) Animal Evolutionary Ecology Group

text: public

characteristic: Submitter Id

text: ArrayExpress

text: fruit fly

text: first instar larva stage

text: Aspergillus nidulans mutant laeA

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Drosophila melanogaster

characteristic: title

type: has member


characteristic: INSDC center name

text: public

text: ArrayExpress

text: fruit fly

text: first instar larva stage

text: Aspergillus nidulans wild type

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: INSDC first public

text: public

text: ArrayExpress

text: fruit fly

text: first instar larva stage

text: control

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: INSDC last update

text: public

text: ArrayExpress

text: fruit fly

text: first instar larva stage

text: Sterigmatocystin

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

characteristic: INSDC status

text: human

text: THP-1 cell line with CRISPR/CAS9 induced B2M gene KO.

text: Homo sapiens

text: Homo sapiens

text: Control


text: public

characteristic: SRA accession

text: human

text: Homo sapiens

text: Homo sapiens

text: Control + DNA


text: public

text: human

text: THP-1 cell line with CRISPR/CAS9 induced IFI16 gene KO.

text: Homo sapiens

text: Homo sapiens

text: IFI16 KO


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: IFI16 KO + DNA


text: INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: public

tag: Namespace:INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: whole genome sequence from strain PcyII-10 assembled from Illumina and PacBio sequence data

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa strain PcyII-10


E-MTAB-5345:Sample 16

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 16

tag: Namespace:CNRS, EPOC UMR 5805

text: ArrayExpress

characteristic: broker name

text: Pacific oyster

text: Protocols: Diploid Pacific oysters C. gigas (1.5 years old, n=156) from the Bay of Arcachon (France) (72.8 ± 0.5 mm shell length; 40.6 ± 0.4 mm shell width; 38.5 ± 0.8 g total fresh weight; mean ± SE) were divided among 6 tanks isolated from external vibration using an anti-vibrating bench and continuously supplied with homogenized seawater of constant composition (T°C = 15.0 ± 0.2°C; pH = 8.0 ± 0.1; salinity = 35.8 ± 0.01 ‰). Experiments were conducted in December to avoid gametogenesis. Oysters were acclimated to 9 hr light-15 hr dark conditions to mimic a natural light regime in winter time and fed with the non-harmful alga Heterocapsa triquetra for 6 days of pre-exposure (continuously supplied with algae at a flow rate of 100mL.min-1 at a concentration of 1000 cells.mL-1; 208.3 ± 44.5 cells.mL-1 measured in H.t tanks; 208.7 ± 38.1 cells.mL-1 measured in A.m tanks, mean ± SE). Then, the H.t treatment group (3 replicate tanks) remained exposed to H. triquetra whereas the A.m treatment group (3 replicate tanks) was exposed to the harmful alga Alexandrium minutum for 6 days (continuously supplied with algae at a flow rate of 100mL.min-1 at a concentration of 1000 cells.mL-1; 159.1 ± 15.7 cells.mL-1 measured in H.t tanks; 430.9 ± 160.8 cells.mL-1 measured in A.m tanks, mean ± SE). During the two last days of exposure, gill tissue (n = 6 oysters per condition) was individually collected every 4 hr for 52 hr, under natural light during light phases and under dim red light during dark phases, for a total of 13 sampling times per condition (day 1: Zeitgeber time ZT 4.5, ZT 8.5, ZT 12.5, ZT 16.5, ZT 20.5; day 2: ZT 0.5, ZT 4.5, ZT 8.5, ZT 12.5, ZT 16.5, ZT 20.5; day 3: ZT 0.5; ZT 4.5). Total RNA from gills was extracted from samples using TRI® Reagent (Invitrogen). After purity (Nanodrop) and quality (Agilent 210 BioAnalyzer, RIN value > 8.5) checks, RNA samples were normalized and pooled according to time and condition (n=6 per time and condition). Messenger RNA purifications were performed to generate libraries from 4 µg of total RNA using the Illumina TruSeq Strantred mRNA Sample Prep kit according to the manufacturer’s protocol.

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

characteristic: organism part

text: Crassostrea gigas

text: Sample 16


E-MTAB-5345:Sample 3

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 3

text: ArrayExpress

text: Pacific oyster

characteristic: common name

characteristic: description

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 3


E-MTAB-5345:Sample 17

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 17

text: ArrayExpress

text: Pacific oyster

text: Alexandrium minutum

characteristic: growth condition

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 17


E-MTAB-5345:Sample 4

characteristic: ENA-CHECKLIST

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 4

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 4


E-MTAB-5345:Sample 18

characteristic: ENA-FIRST-PUBLIC

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 18

text: ArrayExpress

text: Pacific oyster

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 18


E-MTAB-5345:Sample 5

characteristic: ENA-LAST-UPDATE

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 5

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 5


E-MTAB-5345:Sample 1

characteristic: External Id

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 1

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 1


E-MTAB-5345:Sample 14

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: Pacific oyster

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 14


E-MTAB-5345:Sample 15

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 15

text: ArrayExpress

text: Pacific oyster

text: Alexandrium minutum

text: Crassostrea gigas

characteristic: organism

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 15


E-MTAB-5345:Sample 2

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 2

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 2

characteristic: title


E-MTAB-5345:Sample 19

text: CNRS, EPOC UMR 5805

characteristic: INSDC center name

text: public

text: E-MTAB-5345:Sample 19

text: ArrayExpress

text: Pacific oyster

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 19


E-MTAB-5345:Sample 6

text: CNRS, EPOC UMR 5805

characteristic: INSDC first public

text: public

text: E-MTAB-5345:Sample 6

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 6


E-MTAB-5345:Sample 22

text: CNRS, EPOC UMR 5805

characteristic: INSDC last update

text: public

text: E-MTAB-5345:Sample 22

text: ArrayExpress

text: Pacific oyster

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 22


E-MTAB-5345:Sample 9

text: CNRS, EPOC UMR 5805

text: public

characteristic: INSDC status

text: E-MTAB-5345:Sample 9

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 9


E-MTAB-5345:Sample 10

text: CNRS, EPOC UMR 5805

text: public

characteristic: SRA accession

text: E-MTAB-5345:Sample 10

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 10


E-MTAB-5345:Sample 23

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 23

text: ArrayExpress

characteristic: broker name

text: Pacific oyster

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 23


E-MTAB-5345:Sample 11

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 11

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

characteristic: organism part

text: Crassostrea gigas

text: Sample 11


E-MTAB-5345:Sample 24

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 24

text: ArrayExpress

text: Pacific oyster

characteristic: common name

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 24


E-MTAB-5345:Sample 20

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 20

text: ArrayExpress

text: Pacific oyster

characteristic: description

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 20


E-MTAB-5345:Sample 7

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 7

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

characteristic: growth condition

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 7


E-MTAB-5345:Sample 21

characteristic: ENA-CHECKLIST

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 21

text: ArrayExpress

text: Pacific oyster

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 21


E-MTAB-5345:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 8

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 8


E-MTAB-5345:Sample 12

characteristic: ENA-LAST-UPDATE

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 12

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 12


E-MTAB-5345:Sample 25

characteristic: External Id

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 25

text: ArrayExpress

text: Pacific oyster

text: Alexandrium minutum

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 25


E-MTAB-5345:Sample 13

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: Pacific oyster

text: Heterocapsa triquetra

text: Crassostrea gigas

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 13


E-MTAB-5345:Sample 26

text: CNRS, EPOC UMR 5805

text: public

text: E-MTAB-5345:Sample 26

text: ArrayExpress

text: Pacific oyster

text: Alexandrium minutum

text: Crassostrea gigas

characteristic: organism

text: Crassostrea gigas

text: gill

text: Crassostrea gigas

text: Sample 26


text: National Swine Fever Reference Center

text: public

tag: Namespace:National Swine Fever Reference Center

text: IZSUM

characteristic: collected by

text: IZSUM

characteristic: collecting institution

text: Giammarioli M.

characteristic: collector name

text: We sequenced the complete genome of Bovine viral diarrhea virus (BVDV) strain UM/103/04. It belongs to the subgenotype 1g, which is described in Italy as sporadic subgenotype in permanent infected animal (PI). The complete genome is 12,164, nucleotides (nt); the open reading frame is 11,694 nt, coding 3898 amino acids. This is the first report of a full-length sequence of BVDV 1g.

text: Italy

characteristic: geographic location (country and/or sea)

text: UMBRIA

characteristic: geographic location (region and locality)

text: BOS TAURUS

characteristic: host scientific name

text: SPLEEN

characteristic: isolation source

text: Bovine viral diarrhea virus 1

text: Bovine viral diarrhea virus 1

text: Complete genome sequence of Bovine viral diarrhea virus sub-genotype 1g strain isolated in Italy

characteristic: title

characteristic: virus identifier


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: arid-soil

characteristic: anonymized name

text: 1:5 soil:water extraction, potentiometric conductivity determination (Soluble salts/0.35).

text: mS per kg

characteristic: depth

text: [JJ], arid-soil

characteristic: description

text: true

characteristic: electrical conductivity

characteristic: elevation

text: desert biome

characteristic: env biome

text: dry soil

characteristic: env feature

text: soil

characteristic: env package

text: soil

text: true

characteristic: extracted DNA avail now

text: India:Thar Ddesert

characteristic: geo loc name

text: JJ

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: soil metagenome

characteristic: ph

text: 12 (v/v) soil water slurry followed by potentiometric determination of pH

characteristic: ph method

text: LBNL

text: true

text: true

characteristic: public

text: completed

text: soil

characteristic: sample type

text: Sequenced (16S)

text: soil metagenome

text: Nitric / hydrochloric acid digestion. US EPA 200.2.1:5 soil:water extraction followed by potentiometric determination of conductivity. SS=EC*0.35 Calculated from EC measurement.

text: g per 100g dry weight

text: Environmental metagenomic interrogation of Thar desert microbial communities

characteristic: tot p

characteristic: tot s

text: Nitric/Hydrochloric acid digestion, ICP-MS, screen level. US EPA 200.2.

text: mg per kg dry weight

text: Missing: Not provided

text: Catalytic Combustion (900l_C, O2 ), separation, Thermal Conductivity Detector Elementar Analyser

text: g per 100g dry weight

text: g per 100g dry weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: semiarid-soil

characteristic: anonymized name

text: mS per kg

characteristic: depth

text: [Pd], semiarid-soil

characteristic: description

text: true

text: desert biome

text: dry soil

text: soil

text: soil

text: true

text: India:Thar Ddesert

text: Pd

text: soil metagenome

characteristic: organism

text: LBNL

text: true

text: true

text: completed

text: soil

text: Sequenced (16S)

text: soil metagenome

text: g per 100g dry weight

characteristic: title

text: mg per kg dry weight

text: Missing: Not provided

text: g per 100g dry weight

text: g per 100g dry weight

text: Missing: Not provided


text: MPICE

text: public

text: Nicrophorus vespilloides

text: Nicrophorus vespilloides

text: Nicrophorus Microbiome


text: PASTEUR

text: public

text: Salmonella enterica subsp. enterica serovar Enteritidis


text: public

text: DTU2016_422_PRJ1050_Salmonella_enteritidis_341554

tag: Namespace:Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Austria

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

characteristic: isolate

text: Enteritidis

characteristic: serovar

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2015_1235_PRJ1050_Salmonella_enteritidis_344814

text: DTU-GE

text: DTU

text: No

text: Austria

text: Yes

text: Salmonella enterica

text: Enteritidis

text: EURL


text: public

text: DTU2016_423_PRJ1050_Salmonella_infantis_1418199_1STR1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Belgium

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Infantis

characteristic: organism

text: Infantis

text: EURL

characteristic: title


text: public

text: DTU2016_424_PRJ1050_Salmonella_salmonella_1415511_1STR1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: DTU2015_1236_PRJ1050_Salmonella_enteritidis_1411776_1STR1

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Yes

text: Salmonella enterica

text: EURL


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_425_PRJ1050_Salmonella_enteritidis_S14BD03517

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Yes

text: Salmonella enterica

text: EURL


text: public

text: DTU2016_426_PRJ1050_Salmonella_enteritidis_1414949_1STR1

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Belgium

text: Yes

text: Salmonella enterica

characteristic: organism

text: EURL

characteristic: title


text: public

text: DTU2016_427_PRJ1050_Salmonella_paratyphi_S14FP00993

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Paratyphi A

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_428_PRJ1050_Salmonella_paratyphi_S14FP01130

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Yes

text: Salmonella enterica

characteristic: isolate

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

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text: DTU2016_429_PRJ1050_Salmonella_paratyphi_S14FP01131

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Yes

text: Salmonella enterica

text: EURL


text: public

text: DTU2016-607-PRJ1050-Salmonella-Typhimurium-S14BD03912_S4_L001_R1_001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Belgium

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: organism

text: EURL


text: public

text: DTU2016_430_PRJ1050_Eschericha_coli_iso_865_103

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Bulgaria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_431_PRJ1050_Eschericha_coli_iso_865_104

text: DTU-GE

text: DTU

text: No

text: Bulgaria

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_432_PRJ1050_Salmonella_infantis_iso_649

text: DTU-GE

text: DTU

text: No

text: Bulgaria

text: Yes

text: Salmonella enterica

characteristic: isolate

text: EURL


text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: public

characteristic: SRA accession

text: DTU2016_433_PRJ1050_Salmonella_infantis_iso_949

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Bulgaria

text: Yes

text: Salmonella enterica

text: EURL


text: public

text: DTU2016_434_PRJ1050_Salmonella_infantis_HRSAL1347_1_14

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Croatia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

characteristic: organism

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_435_PRJ1050_Salmonella_infantis_HRSAL2658_14

text: DTU-GE

text: DTU

text: No

text: Croatia

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Infantis

text: EURL

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_436_PRJ1050_Eschericha_coli_01_1242

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_437_PRJ1050_Eschericha_coli_01_1342

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Cyprus

text: Yes

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

text: DTU2016_438_PRJ1050_Eschericha_coli_01_1699

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Cyprus

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_439_PRJ1050_Eschericha_coli_01_1780

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_440_PRJ1050_Eschericha_coli_01_1812

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL

characteristic: title


text: public

characteristic: SRA accession

text: DTU2016_441_PRJ1050_Eschericha_coli_01_1917

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Cyprus

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

text: DTU2016_442_PRJ1050_Eschericha_coli_194_E_C_1

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Cyprus

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_443_PRJ1050_Eschericha_coli_01_2213

text: DTU-GE

text: DTU

text: No

text: Cyprus

characteristic: geographic location (longitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_444_PRJ1050_Eschericha_coli_01_2231

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_445_PRJ1050_Eschericha_coli_01_2289

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Cyprus

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL

characteristic: title


text: public

text: DTU2016_446_PRJ1050_Eschericha_coli_01_3018

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Cyprus

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_447_PRJ1050_Eschericha_coli_455_1

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Yes

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: EURL


text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_448_PRJ1050_Eschericha_coli_817_1

text: DTU-GE

text: DTU

text: No

text: Cyprus

characteristic: geographic location (longitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_449_PRJ1050_Eschericha_coli_889_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Cyprus

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EURL


text: public

text: DTU2016_450_PRJ1050_Salmonella_infantis_37747

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Cyprus

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Salmonella enterica

text: EURL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_451_PRJ1050_Salmonella_infantis_l_301_302

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Infantis

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_452_PRJ1050_Salmonella_infantis_l_303_304

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Yes

text: Salmonella enterica

characteristic: isolate

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_453_PRJ1050_Salmonella_infantis_l_307_308

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Cyprus

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

text: EURL


text: public

text: DTU2016_454_PRJ1050_Salmonella_infantis_lzls_23_01_570

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Cyprus

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Salmonella enterica

characteristic: organism

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_455_PRJ1050_Salmonella_infantis_izis_23_01_682

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Yes

text: Salmonella enterica

text: EURL

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_456_PRJ1050_Salmonella_infantis_36645

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_457_PRJ1050_Salmonella_kentucky_l_1184_1185

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Cyprus

text: Yes

text: Salmonella enterica

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Kentucky

text: EURL


text: public

text: DTU2016_458_PRJ1050_Salmonella_virchow_32884

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Cyprus

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Virchow

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2015_1237_PRJ1050_Salmonella_enteritidis_BA_17761

text: DTU-GE

text: DTU

text: No

text: Czech Republic

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Enteritidis

characteristic: organism

text: EURL


text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_461_PRJ1050_Salmonella_kentucky_S_5179

text: DTU-GE

text: DTU

text: No

text: Czech Republic

text: Yes

text: Salmonella enterica

text: EURL

characteristic: title


text: public

characteristic: SRA accession

text: DTU2016_459_PRJ1050_Salmonella_infantis_S_3514

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Czech Republic

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: EURL


text: public

text: DTU2016_460_PRJ1050_Salmonella_kentucky_BA_14871

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Salmonella enterica

characteristic: isolate

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2015_1238_PRJ1050_Salmonella_enteritidis_F14_741_1_412

text: DTU-GE

text: DTU

text: No

text: Denmark

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_462_PRJ1050_Eschericha_coli_EST2014_131

text: DTU-GE

text: DTU

text: No

text: Estonia

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_463_PRJ1050_Eschericha_coli_EST2014_139

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Estonia

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL

characteristic: title


text: public

text: DTU2016_464_PRJ1050_Eschericha_coli_EST2014_328

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_465_PRJ1050_Eschericha_coli_EST2014_462

text: DTU-GE

text: DTU

text: No

text: Estonia

text: Yes

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_466_PRJ1050_Eschericha_coli_EST2014_7

text: DTU-GE

text: DTU

text: No

text: Estonia

characteristic: geographic location (longitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_472_PRJ1050_Salmonella_havana_5193

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Greece

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Havana

characteristic: organism

text: EURL


text: public

text: DTU2016_473_PRJ1050_Eschericha_coli_M2014_10008815

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_474_PRJ1050_Eschericha_coli_M2014_10044842

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016-609-PRJ1050-Salmonella-Enteritidis-M2014-ETBI-017340-01_S6_L001

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Yes

text: Salmonella enterica

characteristic: isolate

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_475_PRJ1050_Salmonella_enteritidis_M2014_ETBI_050198_01

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Hungary

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

text: EURL


text: public

text: DTU2016_476_PRJ1050_Salmonella_enteritidis_M2014_ETBI_051017_01

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Enteritidis

characteristic: organism

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: public

text: DTU2016_477_PRJ1050_Salmonella_hadar_M2014-ETBI_048890_01

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Hadar

text: EURL

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016-612-PRJ1050-Salmonella-Infantis-M2014-ETBI-046249-03_S9_L001

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Infantis

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_478_PRJ1050_Salmonella_infantis_M2014_ETBI_000267_01

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Hungary

text: Yes

text: Salmonella enterica

characteristic: isolate

text: EURL


text: public

text: DTU2016_479_PRJ1050_Salmonella_infantis_M2014_ETBI_008738_01

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_480_PRJ1050_Salmonella_infantis_M2014_ETBI_012461_01

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Yes

text: Salmonella enterica

characteristic: organism

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_481_PRJ1050_Salmonella_infantis_M2014_ETBI_013389_01

text: DTU-GE

text: DTU

text: No

text: Hungary

text: Yes

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text: DTU

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text: No

text: Hungary

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

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text: public

text: DTU2016_483_PRJ1050_Salmonella_kentucky_M2014_ETBI_000040_01

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text: DTU

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text: Salmonella enterica

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characteristic: geographic location (longitude)

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text: DTU2016_485_PRJ1050_Salmonella_kentucky_M2014_ETBI_019947_01

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text: Yes

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text: EURL


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text: No

text: Hungary

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text: Salmonella enterica

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characteristic: title


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text: DTU2016_487_PRJ1050_Salmonella_newport_M2014_ETBI_000864_01

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characteristic: collection date

text: No

characteristic: environmental sample

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

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text: DTU-GE

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characteristic: is the sequenced pathogen host associated?

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text: Escherichia coli

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text: Escherichia coli

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text: Yes

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text: public

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text: No

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text: Yes

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text: Escherichia coli

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characteristic: INSDC center name

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text: public

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text: Yes

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text: No

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text: Escherichia coli

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text: DTU2016_494_PRJ1050_Eschericha_coli_EC158

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text: DTU

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text: No

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text: Yes

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text: DTU

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characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

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text: Escherichia coli

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text: public

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text: DTU2016_496_PRJ1050_Eschericha_coli_EC384

text: DTU-GE

text: DTU

text: No

text: Lithuania

text: Yes

text: Escherichia coli

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text: Escherichia coli

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text: No

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text: Yes

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text: Escherichia coli

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text: DTU

text: No

text: Lithuania

text: Yes

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text: Escherichia coli

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characteristic: title


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text: public

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text: DTU2016_500_PRJ1050_Eschericha_coli_EC98

text: DTU-GE

text: DTU

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text: Lithuania

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

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text: DTU2016_501_PRJ1050_Salmonella_heidelberg_SALRIVM381_14

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text: DTU-GE

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text: DTU

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text: No

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text: No

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text: DTU2015_1242_PRJ1050_Salmonella_enteritidis_SAL_RIVM_389_27

text: DTU-GE

text: DTU

text: No

text: Netherlands

text: Yes

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text: Salmonella enterica subsp. enterica serovar Enteritidis

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text: DTU2015_1243_PRJ1050_Salmonella_paratyphi_B_SAL_RIVM_385_19

text: DTU-GE

text: DTU

text: No

text: Netherlands

text: Yes

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text: Salmonella enterica subsp. enterica serovar Paratyphi B

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text: public

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text: DTU2016_503_PRJ1050_Salmonella_infantis_2014_01_7699_1_1_1_1

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text: DTU-GE

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text: DTU

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text: No

text: Norway

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characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Infantis

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text: public

text: DTU2016_504_PRJ1050_Eschericha_coli_U14_1238

text: DTU-GE

text: DTU

characteristic: collection date

text: No

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text: Poland

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text: Yes

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text: Escherichia coli

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text: public

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text: DTU

text: No

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text: Yes

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text: DTU-GE

text: DTU

text: No

text: Poland

text: Yes

text: Salmonella enterica

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text: EURL


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text: DTU2016_507_PRJ1050_Salmonella_mbandaka_S14_0691

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text: DTU-GE

characteristic: broker name

text: DTU

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text: No

text: Poland

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Mbandaka

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characteristic: title


text: public

text: DTU2015_1244_PRJ1050_coli_E.coli_U14_0689

text: DTU-GE

text: DTU

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text: No

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text: Poland

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text: Yes

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text: Escherichia coli

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text: public

text: DTU2016_508_PRJ1050_Salmonella_enteritidis_PAT_14_29155SA

text: DTU-GE

text: DTU

text: No

text: Portugal

text: Yes

text: Salmonella enterica

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text: EURL


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text: public

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text: DTU-GE

text: DTU

text: No

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characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

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text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

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characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Portugal

text: Yes

text: Escherichia coli

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text: Escherichia coli

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text: public

text: DTU2015_1246_PRJ1050_coli_E.coli_PAT_14_28187EC

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text: DTU

characteristic: collection date

text: No

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text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

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text: public

text: DTU2016_509_PRJ1050_ESchericha_coli_10579_1_VS_EC

text: DTU-GE

text: DTU

text: No

text: Romania

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

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text: DTU2016_510_PRJ1050_ESchericha_coli_10904_2_VS_EC

text: DTU-GE

text: DTU

text: No

text: Romania

text: Yes

text: Escherichia coli

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text: Escherichia coli

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text: DTU2015_1248_PRJ1050_coli_E.coli_11279_1_VS_EC

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text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Romania

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text: Yes

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text: Escherichia coli

text: Escherichia coli

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text: public

text: DTU2016_511_PRJ1050_ESchericha_coli_11559_2_VS_EC

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Romania

characteristic: geographic location (country and/or sea)

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text: Yes

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text: Escherichia coli

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text: public

text: DTU2016_512_PRJ1050_enterobakterie_coli_13343_1_2SM_EC

text: DTU-GE

text: DTU

text: No

text: Romania

text: Yes

text: Escherichia coli

text: Escherichia coli

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characteristic: title


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characteristic: INSDC last update

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text: DTU-GE

text: DTU

text: No

text: Romania

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_513_PRJ1050_Salmonella_glostrup_10219_2_DB

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Romania

text: Yes

text: Salmonella enterica

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: EURL


text: public

text: DTU2016_514_PRJ1050_Salmonella_infantis_10295_1_IDSA

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Romania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Infantis

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_515_PRJ1050_Salmonella_infantis_10336_1ID_BZ

text: DTU-GE

text: DTU

text: No

text: Romania

text: Yes

text: Salmonella enterica

characteristic: organism

text: EURL


characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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text: DTU2016_516_PRJ1050_Salmonella_infantis_10395_4ID_BZ

text: DTU-GE

text: DTU

text: No

text: Romania

text: Yes

text: Salmonella enterica

text: EURL

characteristic: title


text: public

characteristic: SRA accession

text: DTU2016_517_PRJ1050_Salmonella_infantis_11155_1_VS

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Romania

text: Yes

characteristic: is the sequenced pathogen host associated?

text: salmonella enterica

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text: public

text: DTU2016_518_PRJ1050_Salmonella_infantis_11654_5ID_BZ

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Romania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Salmonella enterica

characteristic: isolate

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: public

text: DTU2016_519_PRJ1050_Salmonella_infantis_11925_1_BZ

text: DTU-GE

text: DTU

text: No

text: Romania

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_520_PRJ1050_Salmonella_kentucky_10493_2ID_BZ

text: DTU-GE

text: DTU

text: No

text: Romania

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Kentucky

characteristic: organism

text: EURL


text: public

characteristic: SRA accession

text: DTU2015_1250_PRJ1050_Salmonella_kentucky_10591_4_VS

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Romania

text: Yes

text: Salmonella enterica

text: EURL

characteristic: title


text: public

text: DTU2015_1251_PRJ1050_Salmonella_typhimurium_10159_3_BZ

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Romania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_521_PRJ1050_ESchericha_coli_Isol102

text: DTU-GE

text: DTU

text: No

text: Slovakia

text: Yes

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_522_PRJ1050_ESchericha_coli_Isol104

text: DTU-GE

text: DTU

text: No

text: Slovakia

characteristic: geographic location (longitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_523_PRJ1050_ESchericha_coli_Isol105

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Slovakia

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EURL


text: public

text: DTU2016_524_PRJ1050_ESchericha_coli_Isol115

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_525_PRJ1050_ESchericha_coli_Isol116

text: DTU-GE

text: DTU

text: No

text: Slovakia

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_526_PRJ1050_ESchericha_coli_Isol133

text: DTU-GE

text: DTU

text: No

text: Slovakia

text: Yes

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_527_PRJ1050_ESchericha_coli_Isol150

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Slovakia

characteristic: geographic location (longitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

text: DTU2016_528_PRJ1050_ESchericha_coli_Isol151

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_529_PRJ1050_ESchericha_coli_Isol161

text: DTU-GE

text: DTU

text: No

text: Slovakia

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_530_PRJ1050_ESchericha_coli_Isol163

text: DTU-GE

text: DTU

text: No

text: Slovakia

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: public

characteristic: SRA accession

text: DTU2015_1252_PRJ1050_coli_E.coli_Isol165

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Slovakia

text: Yes

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

text: DTU2016_531_PRJ1050_ESchericha_coli_Isol181

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_532_PRJ1050_ESchericha_coli_ZTA14_00120EC

text: DTU-GE

text: DTU

text: No

text: Spain

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_533_PRJ1050_ESchericha_coli_ZTA14_00134EC

text: DTU-GE

text: DTU

text: No

text: Spain

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL

characteristic: title


text: public

characteristic: SRA accession

text: DTU2016_534_PRJ1050_ESchericha_coli_ZTA1_00895EC

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Spain

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

text: DTU2016_535_PRJ1050_Salmonella_cerro_140595

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Salmonella enterica

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2015_1253_PRJ1050_Salmonella_enteritidis_24103

text: DTU-GE

text: DTU

text: No

text: Spain

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_536_PRJ1050_Salmonella_infantis_23692

text: DTU-GE

text: DTU

text: No

text: Spain

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Infantis

characteristic: organism

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_537_PRJ1050_Salmonella_kentucky_141118

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Spain

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Kentucky

text: EURL

characteristic: title


text: public

text: DTU2016_538_PRJ1050_Salmonella_kentucky_23617

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_539_PRJ1050_Salmonella_kentucky_24521

text: DTU-GE

text: DTU

text: No

text: Spain

text: Yes

text: Salmonella enterica

characteristic: isolate

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_540_PRJ1050_Salmonella_kentucky_24739

text: DTU-GE

text: DTU

text: No

text: Spain

characteristic: geographic location (longitude)

text: Yes

text: Salmonella enterica

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_541_PRJ1050_Salmonella_typhimurium_140814

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Spain

text: Yes

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: organism

text: EURL


text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: public

text: DTU2015_1254_PRJ1050_Salmonella_typhimurium_24768

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Salmonella enterica

text: EURL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2016_542_PRJ1050_ESchericha_coli_ECT11

text: DTU-GE

text: DTU

text: No

text: Sweden

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_543_PRJ1050_ESchericha_coli_14_MHK0477_Ec

text: DTU-GE

text: DTU

text: No

text: Switzerland

text: Yes

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

characteristic: SRA accession

text: DTU2016_544_PRJ1050_ESchericha_coli_14_MHK0493_Ec

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

text: Switzerland

characteristic: geographic location (longitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: EURL


text: public

text: DTU2016_545_PRJ1050_ESchericha_coli_14_MHK1815_Ec

text: DTU-GE

text: DTU

characteristic: collection date

text: No

characteristic: environmental sample

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EURL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: DTU2015_1255_PRJ1050_Salmonella_typhimurium_14_MHK2020_S

text: DTU-GE

text: DTU

text: No

text: Switzerland

text: Yes

text: Salmonella enterica

text: EURL

characteristic: title


text: PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Salmonella enterica subsp. enterica serovar Enteritidis


text: INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Pseudomonas aeruginosa strain PcyII-10 colony C9 carrying levivirus LeviOr01

characteristic: description

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: public

text: Pseudomonas aeruginosa strain PcyII-10 colony C19 carrying levivirus LeviOr01

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: public

text: Pseudomonas aeruginosa strain PcyII-10 colony C19-A1 carrying levivirus LeviOr01

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: public

text: Pseudomonas aeruginosa strain PcyII-10 colony C19-C5 carrying levivirus LeviOr01

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

text: DTU2016-1740-PRJ1084-1067-Escherichia-coli-8978-1B_S20_L001

text: DTU-GE

characteristic: broker name

text: Asta

characteristic: collected by

characteristic: collection date

text: No

text: Lithuania

characteristic: geographic location (longitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: Asta


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: DTU2016-1744-PRJ1084-1067-Escherichia-coli-7966-1B_S21_L001

text: DTU-GE

text: Asta

text: No

characteristic: environmental sample

text: Lithuania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Asta


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DTU2016-1745-PRJ1084-1067-Escherichia-coli-8170-1B_S22_L001

text: DTU-GE

text: Asta

text: No

text: Lithuania

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Asta

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-1747-PRJ1084-1067-Escherichia-coli-9881-1B_S23_L001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Asta

characteristic: collected by

text: No

text: Lithuania

text: Yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Asta


characteristic: ENA-CHECKLIST

text: public

text: DTU2016-1938-PRJ1084-1067-Escherichia-coli-9383-1B_S24_L001

text: DTU-GE

text: Asta

characteristic: collection date

text: No

text: Lithuania

characteristic: geographic location (longitude)

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: Asta


characteristic: ENA-FIRST-PUBLIC

text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: public

text: DTU2016-1939-PRJ1084-1067-Escherichia-coli-8758-1B_S25_L001

text: DTU-GE

text: Asta

text: No

characteristic: environmental sample

text: Lithuania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Yes

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Asta


name: Chironomus riparius (Laufer) draft genome

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAINZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Non-biting midges of the genus Chironomus are a model organism to answer questions on the molecular evolution of genes and genome organisation. In ecotoxicology, the aquatic chironomid larvae are used as an indicator for environmental pollution. Here we provide the draft genome of the most commonly studied species, Chironomus riparius (Laufer).

characteristic: description

text: Laufer

characteristic: ecotype

text: Chironomus riparius

text: Chironomus riparius


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: sample description

text: Plasmodium falciparum

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Leibniz Institute on Aging - Fritz Lipmann Institute (FLI)

text: public

tag: Namespace:Leibniz Institute on Aging – Fritz Lipmann Institute (FLI)

text: 5 weeks

characteristic: age

text: turquoise killifish

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: male

characteristic: sex

text: GRZ

characteristic: strain

text: muscle

characteristic: tissue type

text: Nothobranchius furzeri GRZ fish 1 (male)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: turquoise killifish

text: Nothobranchius furzeri

characteristic: organism

text: Nothobranchius furzeri

text: male

text: GRZ

text: Nothobranchius furzeri GRZ fish 2 (male)


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

text: 16.9 weeks

text: turquoise killifish

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: male

text: GRZ

text: head, muscle

text: Nothobranchius furzeri GRZ fish 3 (male)


text: public

characteristic: INSDC status

characteristic: SRA accession

text: 17.5 weeks

text: turquoise killifish

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: female

text: GRZ

text: trunk part

text: Nothobranchius furzeri GRZ fish 31 (female)


text: public

characteristic: Submitter Id

text: 9 weeks

text: turquoise killifish

characteristic: common name

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: female

text: GRZ

text: muscle

text: Nothobranchius furzeri GRZ fish 55 (female)


text: public

text: turquoise killifish

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: Nothobranchius furzeri MZM-0403 individual G3bM001 (male)

characteristic: title