name: pETT::ETT-GFP in ett-3 +IAA rep2

text: JIC

text: public

text: pETT::ETT-GFP in ett-3 +IAA rep2

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: ett-3 +/- IAA ChIP-Seq and control


name: pETT::ETT-GFP in ett-3 +IAA rep3

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pETT::ETT-GFP in ett-3 +IAA rep3

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: ett-3 +/- IAA ChIP-Seq and control

characteristic: title


Control

text: JIC

text: public

text: Control

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: ett-3 +/- IAA ChIP-Seq and control


text: ENS Lyon

text: public

tag: Namespace:ENS Lyon

text: Oscheius tipulae

text: Oscheius tipulae

text: JU386 x JU170

characteristic: strain

text: Bulk genomic DNA of a mapping population for mf99 allele

type: has member


text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

text: Vibrio cholerae

text: Vibrio cholerae


text: PASTEUR

text: public

text: KHM

text: Salmonella

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Typhimurium

type: AMR curated data - CABBAGE

value: chloramphenicol

value: CLSI

value: disk diffusion

value: resistant

value: Salmonella enterica

value: ampicillin

value: ceftazidime

value: mm

value: susceptible

value: meropenem

value: trimethoprim-sulfamethoxazole

value: ertapenem

value: tetracycline

value: ceftriaxone

value: nalidixic acid

value: gentamicin

value: pefloxacin


characteristic: ENA-CHECKLIST

text: PASTEUR

text: public

text: KHM

text: Salmonella

text: Homo sapiens

value: chloramphenicol


characteristic: ENA-FIRST-PUBLIC

text: PASTEUR

text: public

text: KHM

text: Salmonella

text: Homo sapiens

value: CLSI


characteristic: ENA-LAST-UPDATE

text: PASTEUR

text: public

text: KHM

text: Salmonella

text: Homo sapiens

value: disk diffusion


characteristic: External Id

text: PASTEUR

text: public

text: KHM

text: Salmonella

text: Homo sapiens

value: resistant


text: PASTEUR

characteristic: INSDC center name

text: public

text: KHM

text: Salmonella

text: Homo sapiens

value: Salmonella enterica


text: ENS Lyon

characteristic: INSDC first public

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: JU101 X JU170

text: Bulk genomic DNA of a mapping population for mf67 allele


text: ENS Lyon

characteristic: INSDC last update

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: JU100 x JU170

text: Bulk genomic DNA of a mapping population for mf76 allele


text: ENS Lyon

text: public

characteristic: INSDC status

text: Oscheius tipulae

text: Oscheius tipulae

text: JU172 x JU170

text: Bulk genomic DNA of a mapping population for mf89 allele


text: ENS Lyon

text: public

characteristic: SRA accession

text: Oscheius tipulae

text: Oscheius tipulae

text: JU78 x JU170

text: Bulk genomic DNA of a mapping population for mf54 allele


text: ENS Lyon

text: public

characteristic: Submitter Id

text: Oscheius tipulae

text: Oscheius tipulae

text: JU105 X JU170

text: Bulk genomic DNA of a mapping population for sy466 allele


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: JU102 X JU170

text: Bulk genomic DNA of a mapping population for sy460 allele


text: INRA GRIGNON

text: public

tag: Namespace:INRA GRIGNON

text: We report here the genome sequence of Brevibacterium sp. Mu109, isolated from cheese. Sequencing was performed using Illumina MiSeq technology.

characteristic: description

text: Brevibacterium sp. Mu109

text: Brevibacterium sp. Mu109

text: Draft genome sequence of Brevibacterium sp. Mu109


text: Lung

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Lung

characteristic: phenotype

text: Mus musculus

characteristic: subject id


text: Normal

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Normal

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CBMSO

text: public

text: EV_21_Secret_4690_6_ATTCCT_L005_R1_001.fastq.gz

text: Ectromelia virus

text: Ectromelia virus

text: ECTV


characteristic: External Id

text: CBMSO

characteristic: INSDC center name

text: public

text: EV_CRD_4690_5_ACTGAT_L005_R1_001.fastq.gz

text: Ectromelia virus

text: Ectromelia virus

text: ECTV


text: INSTITUT PASTEUR

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Vibrio cholerae

text: Vibrio cholerae


text: WESTERN UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WESTERN UNIVERSITY

characteristic: collection date

text: Note: range of sampling dates. J018-023 2009-06 O018-023 2009-10 BGSilphiumOD 2014-06.

text: Grassland

characteristic: environment (biome)

text: Tallgrass Prairie

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: J018-023 ITS6_4F gtaagcgc D1R_1R aagatggt; O018-023 ITS6_5F tccgccaa D1R_2R gaggagat; BGSilphiumOD 28S200BG_16F tccgttcg D1R_2R gaggagat

characteristic: multiplex identifiers

text: fungus metagenome

characteristic: project name

text: fungus metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Walpole - Silphium Prairie


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WESTERN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Note: range of sampling dates. J024-029 2009-06 O024-029 2009-10 BGSandpitsOD 2014-06.

characteristic: description

text: Grassland

text: Tallgrass Prairie

text: Soil

text: Canada

text: metagenome

text: J024-029 ITS6_4F gtaagcgc D1R_2R gaggagat; O024-029 ITS6_5F tccgccaa D1R_3R tccgttcg; BGSandpitsOD 28S200BG_13F agccacac D1R_2R gaggagat

text: fungus metagenome

characteristic: organism

text: fungus metagenome

text: Illumina MiSeq

text: soil

text: Walpole - Sandpits

characteristic: title


text: WESTERN UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Note: range of sampling dates. J030-035 2009-06 O030-035 2009-10.

text: Grassland

characteristic: environment (biome)

text: Tallgrass Prairie

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: J030-035 ITS6_4F gtaagcgc D1R_3R tccgttcg; O030-035 ITS6_5F tccgccaa D1R_4R cattaagg

text: fungus metagenome

text: fungus metagenome

text: Illumina MiSeq

text: soil

text: Walpole - Mike's Field


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WESTERN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Note: range of sampling dates. J012-017 2009-06 O012-017 2009-10 BGElizasOD 2014-06.

text: Grassland

text: Tallgrass Prairie

text: Soil

text: Canada

text: metagenome

characteristic: investigation type

text: J012-017 ITS6_3F tggcggct D1R_4R cattaagg; O012-017 ITS6_5F tccgccaa D1R_1R aagatggt; BGElizasOD 28S200BG_14F caggctta D1R_2R gaggagat

characteristic: multiplex identifiers

text: fungus metagenome

characteristic: project name

text: fungus metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Walpole - Eliza's Prairie


text: WESTERN UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Note: range of sampling dates. J006-011 2009-06 O006-011 2009-10 BGPottawatomiOD 2014-06.

characteristic: description

text: Grassland

characteristic: environment (biome)

text: Tallgrass Prairie

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Canada

text: metagenome

text: J006-011 ITS6_3F tggcggct D1R_3R tccgttcg; O006-011 ITS6_4F gtaagcgc D1R_4R cattaagg; BGPottawatomiOD 28S200BG_15F gaggagat D1R_2R gaggagat

text: fungus metagenome

characteristic: organism

text: fungus metagenome

text: Illumina MiSeq

text: soil

text: Walpole - Pottawatomi Prairie

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIB

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: the fermentation pit mud

text: fermentation pit for CSFL

text: pit mud

text: mud

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: fermentation metagenome

text: PM microbiome

text: fermentation metagenome

text: MiSeq

text: pit mud microbiome


text: CIB

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: the fermentation pit mud

characteristic: description

text: fermentation pit for CSFL

characteristic: environment (biome)

text: pit mud

text: mud

text: China

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

text: fermentation metagenome

text: PM microbiome

characteristic: project name

text: fermentation metagenome

text: MiSeq

characteristic: sequencing method

text: pit mud microbiome


MF-RhoneAlpes

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Senckenberg BIK-F

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MF-RhoneAlpes

tag: Namespace:Senckenberg BIK-F

text: Chironomus riparius

characteristic: organism

text: Chironomus riparius

text: raw reads of Pool-Seq data

characteristic: title


MG-Hessen

text: Senckenberg BIK-F

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MG-Hessen

text: Chironomus riparius

text: Chironomus riparius

text: raw reads of Pool-Seq data


NMF-Lorraine

text: Senckenberg BIK-F

text: public

characteristic: SRA accession

text: NMF-Lorraine

characteristic: Submitter Id

text: Chironomus riparius

text: Chironomus riparius

text: raw reads of Pool-Seq data


SI-Piemont

text: Senckenberg BIK-F

text: public

text: SI-Piemont

text: Chironomus riparius

text: Chironomus riparius

text: raw reads of Pool-Seq data


SS-Andalusia

text: Senckenberg BIK-F

text: public

text: SS-Andalusia

text: Chironomus riparius

text: Chironomus riparius

text: raw reads of Pool-Seq data


text: Kidney Single Cell

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Kidney Single Cell

characteristic: phenotype

text: Mus musculus

characteristic: subject id


text: Mouse

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mouse

text: Mus musculus


text: Skin

text: Rattus norvegicus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Norway rat

text: Rattus norvegicus

text: Skin

text: Rattus norvegicus


text: Liver

text: Rattus norvegicus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Norway rat

text: Rattus norvegicus

text: Liver

text: Rattus norvegicus


text: Kidney

text: Rattus norvegicus

characteristic: External Id

text: SC

text: public

text: Norway rat

text: Rattus norvegicus

text: Kidney

text: Rattus norvegicus


text: Lung

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Lung

text: Mus musculus


characteristic: INSDC first public

text: public

tag: Namespace:RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES, CHINESE ACADEMY OF SCIENCES

characteristic: collection date

text: aerobic sludge

characteristic: description

text: wastewater sludge

characteristic: environmental package

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: resistome of aerobic sludge

characteristic: project name

text: metagenome

text: Illumina Hiseq

characteristic: sequencing method


text: RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES, CHINESE ACADEMY OF SCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: aerobic sludge

text: wastewater sludge

text: China

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: resistome of aerobic sludge

text: metagenome

text: Illumina Hiseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL EUROPEAN BIOINFORMATICS INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:EMBL EUROPEAN BIOINFORMATICS INSTITUTE

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Isolate representative of cultivable human gut bacteria


text: EMBL EUROPEAN BIOINFORMATICS INSTITUTE

text: public

text: Bifidobacterium longum subsp. longum

text: Bifidobacterium longum subsp. longum


text: EMBL EUROPEAN BIOINFORMATICS INSTITUTE

text: public

text: Clostridium perfringens

text: Clostridium perfringens


text: EMBL EUROPEAN BIOINFORMATICS INSTITUTE

text: public

text: Streptococcus salivarius

text: Streptococcus salivarius


text: EMBL EUROPEAN BIOINFORMATICS INSTITUTE

text: public

text: Lactobacillus paracasei

text: Lactobacillus paracasei


text: EMBL EUROPEAN BIOINFORMATICS INSTITUTE

text: public

text: Bacteroides fragilis

text: Bacteroides fragilis


text: EMBL EUROPEAN BIOINFORMATICS INSTITUTE

text: public

text: Eubacterium limosum

text: Eubacterium limosum


text: INSTITUT PASTEUR

text: public

text: Vibrio cholerae

text: Vibrio cholerae


text: CIC BIOGUNE

text: public

tag: Namespace:CIC BIOGUNE

characteristic: collection date

text: dog gut

characteristic: environment (biome)

text: feaces

characteristic: environment (feature)

text: feaces

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: gut metagenome

text: faecal microbiome in Beagle dogs

text: gut metagenome

text: pyrosequencing

text: feacal microbiome in dogs


text: WUR

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

characteristic: common name

text: Preterim infant microbiota

characteristic: description

text: Faeces

text: Faeces

text: Faeces

text: Netherlands

text: 52°23' N

text: 4°55' E

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Preterm infant microbiota

characteristic: project name

text: Homo sapiens

text: 454 pyrosequencing

characteristic: sequencing method

text: Preterim infant microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:European Bioinformatics Institute (EMBL-EBI)

characteristic: Submitter Id

text: Texas laboratory of the U.S. Department of Agriculture.

characteristic: collected by

text: Adult

characteristic: dev stage

text: USA

text: Culicoides sonorensis

characteristic: organism

text: Culicoides sonorensis

text: Female

characteristic: sex

text: Whole organism

characteristic: tissue type

text: Genomic DNA from female Culicoides sonorensis collected into pools of 100 individuals using an insect-specific modification of Qiagen’s Genomic Tip 20/G protocol and sequenced with Illumina HiSeq2000

characteristic: title


text: European Bioinformatics Institute (EMBL-EBI)

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Adult

text: USA

characteristic: geographic location (country and/or sea)

text: Culicoides sonorensis

text: Culicoides sonorensis

text: Male

text: Whole organism

text: Male Culicoides sonorensis genomic DNA collected into pools of 100 individuals using an insect-specific modification of Qiagen’s Genomic Tip 20/G protocol and sequenced with Illumina HiSeq2500


text: Streptococcus pyogenes

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Streptococcus pyogenes

characteristic: common name

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: subject id

text: Streptococcus pyogenes


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Friedrich Alexander University Erlangen-Nurnberg FAU Department Biology

text: ArrayExpress

characteristic: broker name

text: Meer

characteristic: cell line

text: hematopoietic precursor cell

characteristic: cell type

text: house mouse

text: Protocols: For generation of Meer cells primary hematopoietic precursor cells were isolated from the bone marrow of Meer mice that carry a knock-in of an ENL-ER (mutant estrogen receptor ligand binding domain) portion into the mouse Mll locus. (Lit: Takacova, S. et al. Cancer Cell 21, 517-31, 2012). CD117 (c-kit) positive cells were isolated by magnetic enrichment according to the instructions of the manufacturer (CD117 enrichment kit, Miltenyi Biotech, Bergisch-Gladbach, Germany) and initially plated in methocel (MethoCult M3234, StemCellTechnologies, Koln, Germany) to purge residual stroma cells that cannot grow in semisolid media. After two rounds of growth in methylcellulose cells were expanded in RPMI1640 supplemented with 10% FCS. All media contained 50ng/ml recombinant murine (rm) SCF, 10ng/ml of rm-IL3, IL6, GM-CSF (cytokines were bought from Miltenyi Biotech, Bergisch-Gladbach, Germany) and for activation of the estrogen receptor 100nM 4-hydroxytamoxifen (TAM, Sigma, Taufkirchen, Germany). ChIP was done exactly as described in (Milne, T.A., Zhao, K. & Hess, J.L. Chromatin immunoprecipitation (ChIP) for analysis of histone modifications and chromatin-associated proteins. Methods Mol Biol 538, 409-23 (2009) with the exception that protein G-coupled paramagnetic beads from CellSignalingTechnologies (CST/NEB, Frankfurt, Germany) were used as precipitating agent. Antibodies and concentrations used : anti-H2AUb, Cell Signaling Technologies (#8240) 10µl; anti-H2BUb, Cell Signaling Technologies (#5546) 5µl ChIP Seq library construction with Illumina Kit according to the instructions of the manufacturer

characteristic: description

text: Mll-ENL-ER

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: Friedrich Alexander University Erlangen-Nurnberg FAU Department Biology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: Meer

text: hematopoietic precursor cell

text: house mouse

text: Mll-ENL-ER

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory for Translational Genetics  VIB Center for Cancer Biology (CCB) Department of Human Genetics, KUL

text: ArrayExpress

text: B6 incipient congenic (N5; >95% B6) epiblast-like cells

text: house mouse

text: Protocols: Cells have been collected from B6 incipient congenic (N5; >95% B6) blastocyst-derived embryonic stem cell line (wt) converted in vitro to epiblast-like cells. Genomic DNA was extracted using the Promega Wizard kit, treated with RNase A (NEB) and further purified using the DNeasy Blood & Tissue Kit (Qiagen). DNA was fragmented by sonication to 200-300bp and processed in parallel bisulfite conversion with and without oxidation pre-treatment using the TrueMethyl-Seq kit (Cambridge Epigenetix, UK) according to the manufacturer’s instructions. CEGX TrueMethyl-Seq kit

text: homozygous for Tet1 gene trap GT(RRG140)

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory for Translational Genetics VIB Center for Cancer Biology (CCB) Department of Human Genetics, KUL

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: house mouse

text: wild type

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: pPyCAGIP empty vector

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collected by

text: Adult

characteristic: dev stage

text: USA

characteristic: geographic location (country and/or sea)

text: Culicoides sonorensis

characteristic: organism

text: Culicoides sonorensis

text: Male and Female

text: Whole organism

characteristic: tissue type

text: Draft genome of Culicoides sonorensis (biting midge) assembled with combinatorial next-gen technologies and independent data sets.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: JUSTUS LIEBIG UNIVERSITAT

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:JUSTUS LIEBIG UNIVERSITAT

text: Escherichia coli

text: Escherichia coli

text: Genomic Landscape of mcr-1 encoding E. coli

characteristic: title


BMETH

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: BMETH

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: collection date

text: The methanotrophic symbionts were labeled with 16S rRNA CARD-FISH to sort them by FACS and then specifically only sequence the MOX with MDA

text: hydrothermal vent

characteristic: environment (biome)

text: ocean

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: methanotrophic bacterial endosymbiont of Bathymodiolus sp.

text: Bathybiome

characteristic: project name

characteristic: sequencing method

text: Methanotroph symbiont of Bathymodiolus sp. from Lilliput and Foggy Corner


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

tag: Namespace:Projet Carte dâ€™Identite des Tumeurs LIGUE NATIONALE CONTRE LE CANCER

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: two tumor sampling methods from patients with PDAC: 1- surgery for patients with tumor size < 2cm, and 2- Biopsy followed by Endoscopic Ultrasound-Guided Fine-Needle Aspiration (EUS-FNA) for patients with tumor size > 2cm. this information is given by the \Resectable\ variable. For operated patients (with surgery), tumor cells were xenografted directly. however, for biopsy cells, they were grown in culture for 1 or 2 days, before transplanted to the nude mouse. The final xenografted cells will be collected when the tumor reach a size of 1 cm. Finally, the \Differentiation\, \Fibrosis\, \Inflammation\ information are estimated on the collected xenograft tissues. Total RNA was extracted using Manual-miRneasy Mini (Qiagen) Libraries were prepared using Illumina’s guidelines for the TruSeq Stranded mRNA LT sample prep kit. Fragmentation was done using the alternative fragmentation protocol in order to produce RNA-seq libraries that are compatible with sequencing on a paired-end 100 base pair flow cell (PE-100bp FC). The steps in library prep included o Capture of mRNA on oligo-dT-beads, Concomitant fragmentation and primer annealing, First strand synthesis, Second strand synthesis, 3’ enzymatic steps resulting in end repair, 3’ adenylation, and adapter ligation and Library amplification (PCR) . The strand specificity of the kit is achieved by the presence of dUTP instead of dTTP during the second strand synthesis step. Since the polymerase used in the downstream library amplification step does not incorporate past dUTP, the incorporation of this nucleotide in second strand synthesis effectively quenches the second strand during amplification. Libraries were QC’ed with respect to concentration and size profile: The size profile of the libraries was evaluated by QC of 8 of the samples on an Agilent DNA 1000 or high sensitivity chip. The libraries contain approximately 120 nucleotides of adapter sequence and the remaining size of the library is derived from the input RNA. The library concentration was determined using the KAPA qPCR kit (KK4835) and triplicate reactions using three independent 106-fold dilutions of the libraries.

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: false

characteristic: resectable

text: Homo sapiens

text: female

characteristic: sex

unit: month

characteristic: survival time

text: pancreatic cancer cells grown in nude mouse

characteristic: xenograft

text: false

characteristic: xenograft CIMPclass

text: basal

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: true

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Projet Carte dâ€™Identite des Tumeurs LIGUE NATIONALE CONTRE LE CANCER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: female

characteristic: title

text: false

text: basal

text: non-mucinous

text: false

text: false


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: false

characteristic: resectable

text: Homo sapiens

text: male

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: false

characteristic: xenograft CIMPclass

text: basal

text: oncocyte

text: false

text: false


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: male

text: false

text: basal

characteristic: xenograft MultiOmicsClassification

text: not available

characteristic: xenograft differentiation

text: not available

characteristic: xenograft fibrosis

text: not available

characteristic: xenograft inflammation


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: female

characteristic: title

text: false

text: classical

text: non-mucinous

text: true

text: true


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: alive

text: true

text: Homo sapiens

text: female

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: mucinous

text: false

text: false


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: male

text: true

text: classical

characteristic: xenograft MultiOmicsClassification

text: mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: true

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alive

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: female

characteristic: title

text: false

text: outlier

text: non-mucinous

text: false

text: false


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

text: true

text: Homo sapiens

text: female

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: false

characteristic: xenograft CIMPclass

text: classical

text: mucinous

text: false

text: false


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: true

text: Homo sapiens

text: female

text: true

text: classical

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: false

characteristic: xenograft inflammation


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: false

characteristic: resectable

text: Homo sapiens

text: male

characteristic: title

text: false

text: outlier

text: non-mucinous

text: false

text: false


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: true

text: Homo sapiens

text: male

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: non-mucinous

text: false

text: false


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

text: true

text: Homo sapiens

text: male

text: true

text: classical

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: true

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alive

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: female

characteristic: title

text: false

text: classical

text: non-mucinous

text: true

text: true


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: alive

text: true

text: Homo sapiens

text: female

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: oncocyte

text: true

text: true


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: alive

text: true

text: Homo sapiens

text: female

text: true

text: classical

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: true

characteristic: xenograft inflammation


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alive

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: male

characteristic: title

text: false

text: classical

text: non-mucinous

text: true

text: true


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: true

text: Homo sapiens

text: female

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: false

characteristic: xenograft CIMPclass

text: basal

text: oncocyte

text: false

text: false


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: alive

text: false

text: Homo sapiens

text: male

text: false

text: basal

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: false

characteristic: xenograft fibrosis

text: false

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alive

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: male

characteristic: title

text: false

text: basal

text: non-mucinous

text: true

text: false


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: female

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: non-mucinous

text: true

text: true


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: female

text: false

text: basal

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: false

characteristic: xenograft inflammation


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: male

characteristic: title

text: false

text: classical

text: non-mucinous

text: true

text: false


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: male

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: mucinous

text: true

text: true


text: public

characteristic: ProportionMurineRNA

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: male

text: true

text: classical

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: false

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: false

characteristic: resectable

text: Homo sapiens

text: male

characteristic: title

text: false

text: classical

text: non-mucinous

text: true

text: false


text: WESTERN UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Note: range of sampling dates. BGFRS23JD 2014-06 BGFRS23OD 2014-10.

characteristic: description

text: Grassland

characteristic: environment (biome)

text: Tallgrass Prairie

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: BGFRS23JD 28S200BG_16F tccgttcg 28S481BG_17R ctagtcat; BGFRS23OD 28S200BG_16F tccgttcg 28S481BG_18R gtcttcct

characteristic: multiplex identifiers

text: fungus metagenome

text: PRJEB19932 (ERP022009)

characteristic: project name

text: fungus metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: West Windsor - Herb Gray FRS23


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WESTERN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Note: range of sampling dates. BGFRS32JD 2014-06 BGFRS32OD 2014-10.

text: Grassland

text: Tallgrass Prairie

text: Soil

text: Canada

text: metagenome

text: BGFRS32JD 28S200BG_17F ctagtcat 28S481BG_17R ctagtcat; BGFRS32OD 28S200BG_17F ctagtcat 28S481BG_18R gtcttcct

text: fungus metagenome

characteristic: organism

text: PRJEB19932 (ERP022009)

text: fungus metagenome

text: Illumina MiSeq

text: soil

text: West Windsor - Herb Gray FRS32

characteristic: title


text: WESTERN UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Note: range of sampling dates. BGOPC1JD 2014-06 BGOPC1OD 2014-10.

characteristic: description

text: Grassland

characteristic: environment (biome)

text: Tallgrass Prairie

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: BGOPC1JD 28S200BG_14F caggctta 28S481BG_17R ctagtcat; BGOPC1OD 28S200BG_14F caggctta 28S481BG_18R gtcttcct

text: fungus metagenome

text: PRJEB19932 (ERP022009)

text: fungus metagenome

text: Illumina MiSeq

text: soil

text: West Windsor - Ojibway Prairie Complex Plot 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WESTERN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Note: range of sampling dates. BGOPC2JD 2014-06 BGOPC2OD 2014-10.

text: Grassland

text: Tallgrass Prairie

text: Soil

text: Canada

text: metagenome

characteristic: investigation type

text: BGOPC2JD 28S200BG_15F gaggagat 28S481BG_17R ctagtcat; BGOPC2OD 28S200BG_15F gaggagat 28S481BG_18R gtcttcct

characteristic: multiplex identifiers

text: fungus metagenome

text: PRJEB19932 (ERP022009)

characteristic: project name

text: fungus metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: West Windsor - Ojibway Prairie Complex Plot 2


text: WESTERN UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Note: range of sampling dates. BGFRS27JD 2014-06 BGFRS27OD 2014-10.

characteristic: description

text: Grassland

characteristic: environment (biome)

text: Tallgrass Prairie

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Canada

text: metagenome

text: BGFRS27JD 28S200BG_18F gtcttcct 28S481BG_17R ctagtcat; BGFRS27OD 28S200BG_18F gtcttcct 28S481BG_18R gtcttcct

text: fungus metagenome

characteristic: organism

text: PRJEB19932 (ERP022009)

text: fungus metagenome

text: Illumina MiSeq

text: soil

text: East Windsor - Herb Gray FRS27

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WESTERN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Note: range of sampling dates. BGFRS28JD 2014-06 BGFRS28OD 2014-10.

text: Grassland

text: Tallgrass Prairie

text: Soil

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: BGFRS28JD 28S200BG_17F ctagtcat D1R_1R aagatggt; BGFRS28OD 28S200BG_17F ctagtcat D1R_2R gaggagat

text: fungus metagenome

text: PRJEB19932 (ERP022009)

text: fungus metagenome

text: Illumina MiSeq

text: soil

text: East Windsor - Herb Gray FRS28


text: WESTERN UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Note: range of sampling dates. CC01-CC24 2014-06 CC25-CC48 2014-10. See also NF_DM_43-48 for complete samples from this site (needed to be submitted in two parts because some barcodes overlap).

characteristic: description

text: Grassland

text: Tallgrass Prairie

text: Soil

text: Canada

text: metagenome

characteristic: investigation type

text: BGCC25 28S200BG_13F agccacac D1R_1R aagatggt; BGCC28 28S200BG_15F gaggagat D1R_1R aagatggt; BGCC34 28S200BG_16F tccgttcg D1R_1R aagatggt; BGCC41 28S200BG_14F caggctta D1R_1R aagatggt; BGCC48 28S200BG_18F gtcttcct D1R_1R aagatggt

characteristic: multiplex identifiers

text: fungus metagenome

text: PRJEB19932 (ERP022009)

characteristic: project name

text: fungus metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Norfolk County - DeMaere samples set 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WESTERN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Note: range of sampling dates. CC01-CC24 2014-06 CC25-CC48 2014-10. See also NF_DM_5-48 for complete samples from this site (needed to be submitted in two parts because some barcodes overlap).

text: Grassland

characteristic: environment (biome)

text: Tallgrass Prairie

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Canada

text: metagenome

text: CC01 28S200BG agccacac 28S481BG gtcttcct; CC02 ITS6 tggcggct 28S481BG ctagtcat; CC03 28S200BG gaggagat 28S481BG gtcttcct; CC04 28S200BG tccgttcg 28S481BG gtcttcct; CC05 28S200BG ctagtcat 28S481BG gtcttcct; CC06 28S200BG gtcttcct 28S481BG gtcttcct; CC07 ITS6 ataacgaa 28S481BG gtcttcct; CC08 ITS6 cattaagg 28S481BG gtcttcct; CC09 ITS6 tggcggct 28S481BG gtcttcct; CC10 ITS6 gtaagcgc 28S481BG gtcttcct; CC11 ITS6 tccgccaa 28S481BG gtcttcct; CC12 ITS6 gactaatc 28S481BG gtcttcct; CC13 28S200BG agccacac D1R aagatggt; CC14 ITS6 gtaagcgc 28S481BG ctagtcat; CC15 28S200BG gaggagat D1R aagatggt; CC16 28S200BG tccgttcg D1R aagatggt; CC17 28S200BG ctagtcat D1R aagatggt; CC18 28S200BG gtcttcct D1R aagatggt; CC19 ITS6 ataacgaa D1R aagatggt; CC20 ITS6 cattaagg D1R aagatggt; CC21 ITS6 tggcggct D1R aagatggt; CC22 ITS6 gtaagcgc D1R aagatggt; CC23 ITS6 tccgccaa D1R aagatggt; CC24 ITS6 gactaatc D1R aagatggt; CC26 ITS6 tccgccaa 28S481BG ctagtcat; CC27 28S200BG gaggagat D1R gaggagat; CC29 28S200BG ctagtcat D1R gaggagat; CC30 28S200BG gtcttcct D1R gaggagat; CC31 ITS6 ataacgaa D1R gaggagat; CC32 ITS6 cattaagg D1R gaggagat; CC33 ITS6 tggcggct D1R gaggagat; CC35 ITS6 tccgccaa D1R gaggagat; CC36 ITS6 gactaatc D1R gaggagat; CC37 ITS6 tccgccaa D1R tccgttcg; CC38 ITS6 gactaatc D1R tccgttcg; CC39 28S200BG agccacac D1R tccgttcg; CC40 ITS6 gactaatc 28S481BG ctagtcat; CC42 28S200BG tccgttcg D1R tccgttcg; CC43 28S200BG ctagtcat D1R tccgttcg; CC44 28S200BG gtcttcct D1R tccgttcg; CC45 ITS6 ataacgaa D1R tccgttcg; CC46 ITS6 cattaagg D1R tccgttcg; CC47 ITS6 tggcggct D1R tccgttcg

text: fungus metagenome

characteristic: organism

text: PRJEB19932 (ERP022009)

text: fungus metagenome

text: Illumina MiSeq

text: soil

text: Norfolk County - DeMaere sample set 2

characteristic: title


text: WESTERN UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Note: range of sampling dates. BGRareJD 2014-06 BGRare28OD 2014-10.

characteristic: description

text: Grassland

text: Tallgrass Prairie

text: Soil

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: BGRareJD 28S200BG_13F agccacac 28S481BG_17R ctagtcat; BGRareOD 28S200BG_13F agccacac 28S481BG_18R gtcttcct

text: fungus metagenome

text: PRJEB19932 (ERP022009)

text: fungus metagenome

text: Illumina MiSeq

text: soil

text: Cambridge - Blair Flats


BTEX-polluted groundwater well A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BTEX-polluted groundwater well A

tag: Namespace:FRIEDRICH SCHILLER UNIVERSITY JENA

text: Bacterial 16S rRNA analysis was conducted with groundwater obtained from three sampling wells situated along a hydrocarbon pollutant gradient at the Thuringia gasworks site. Groundwater of well A was characterized by the highest BTEX-concentrations. Microbial communities were analyzed by 16S rRNA amplicon sequencing of the V3/V4 region using an Illumina MiSeq 2x300 platform.

text: urban biome

text: aquifer

text: contaminated water

text: Germany

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: groundwater metagenome

text: Microbial communities of coal tar polluted groundwater

characteristic: project name

text: groundwater metagenome

text: Illumina MiSeq 2x300 (Reagent Kit v3)

characteristic: sequencing method

text: 16S rRNA analysis of groundwater from a coal tar polluted gasworks site (well A)


BTEX-polluted groundwater well B

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BTEX-polluted groundwater well B

characteristic: Submitter Id

characteristic: collection date

text: Bacterial 16S rRNA analysis was conducted with groundwater obtained from three sampling wells situated along a hydrocarbon pollutant gradient at the Thuringia gasworks site. Groundwater of well B was characterized by intermediate BTEX-concentrations. Microbial communities were analyzed by 16S rRNA amplicon sequencing of the V3/V4 region using an Illumina MiSeq 2x300 platform.

text: urban biome

characteristic: environment (biome)

text: aquifer

characteristic: environment (feature)

text: contaminated water

characteristic: environment (material)

text: Germany

text: metagenome

text: groundwater metagenome

characteristic: organism

text: groundwater metagenome

text: Illumina MiSeq 2x300 (Reagent Kit v3)

text: 16S rRNA analysis of groundwater from a coal tar polluted gasworks site (well B)

characteristic: title


BTEX-polluted groundwater well C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

text: BTEX-polluted groundwater well C

text: Bacterial 16S rRNA analysis was conducted with groundwater obtained from three sampling wells situated along a hydrocarbon pollutant gradient at the Thuringia gasworks site. Groundwater of well C was characterized by the lowest BTEX-concentrations. Microbial communities were analyzed by 16S rRNA amplicon sequencing of the V3/V4 region using an Illumina MiSeq 2x300 platform.

characteristic: description

text: urban biome

text: aquifer

text: contaminated water

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: groundwater metagenome

text: groundwater metagenome

text: Illumina MiSeq 2x300 (Reagent Kit v3)

text: 16S rRNA analysis of groundwater from a coal tar polluted gasworks site (well C)


name: Toluene degrading, denitrifying enrichment culture

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bacterial 16S rRNA analysis of a toluene degrading, nitrate-reducing enrichment culture obtained from coal tar polluted groundwater of the Thuringia gasworks site. Microbial communities were analyzed by 16S rRNA amplicon sequencing of the V3/V4 region using an Illumina MiSeq 2x300 platform.

text: culturing environment

text: anaerobic bioreactor

text: water

text: Germany

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: enrichment culture

characteristic: project name

text: enrichment culture

text: Illumina MiSeq 2x300 (Reagent Kit v3)

characteristic: sequencing method

text: 16S rRNA analysis of a toluene degrading, denitrifying enrichment culture obtained from coal tar polluted groundwater


name: Ethylbenzene degrading, denitrifying enrichment culture

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Bacterial 16S rRNA analysis of a ethylbenzene degrading, nitrate-reducing enrichment culture obtained from coal tar polluted groundwater of the Thuringia gasworks site. Microbial communities were analyzed by 16S rRNA amplicon sequencing of the V3/V4 region using an Illumina MiSeq 2x300 platform.

text: culturing environment

characteristic: environment (biome)

text: anaerobic bioreactor

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Germany

text: metagenome

text: enrichment culture

characteristic: organism

text: enrichment culture

text: Illumina MiSeq 2x300 (Reagent Kit v3)

text: 16S rRNA analysis of a ethylbenzene degrading, denitrifying enrichment culture obtained from coal tar polluted groundwater

characteristic: title


name: p-Xylene degrading, nitrate-reducing enrichment culture

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

text: Bacterial 16S rRNA analysis of a p-xylene degrading, nitrate-reducing enrichment culture obtained from coal tar polluted groundwater of the Thuringia gasworks site. Microbial communities were analyzed by 16S rRNA amplicon sequencing of the V3/V4 region using an Illumina MiSeq 2x300 platform.

characteristic: description

text: culturing environment

text: anaerobic bioreactor

text: water

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: enrichment culture

text: enrichment culture

text: Illumina MiSeq 2x300 (Reagent Kit v3)


No-cells control

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: No-cells control

text: Bacterial 16S rRNA analysis was done with DNA extracted from autoclaved, deionized water. The aim was to identify microbial contaminations that are introduced during DNA extraction and/or amplicon preparation. DNA extraction was performed in parallel to the extraction of DNA from coal tar polluted groundwater and BTEX-degrading enrichment cultures. Microbial communities were analyzed by 16S rRNA amplicon sequencing of the V3/V4 region using a Illumina MiSeq 2x300 platform.

text: freshwater biome

text: research facility

text: sterile water

text: Germany

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: synthetic metagenome

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq 2x300 (Reagent Kit v3)

characteristic: sequencing method

text: 16S rRNA analysis of DNA extracted from autoclaved, deionized water which was used as negative control


text: INSTITUT PASTEUR

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:GFZ German Research Centre for Geosciences

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 0.25 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 0.25 cm rep 1


tag: attribute

text: GFZ German Research Centre for Geosciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 0.25 cm. Replicate 2.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: GeoArchives

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - depth 0.25 cm rep 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 1.75 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (depth)

text: Omongwa Pan

text: mimarks-survey

text: metagenome

characteristic: organism

text: GeoArchives

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rDNA

text: Omongwa saline sediment sample - depth 1.75 cm rep 1

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 1.75 cm. Replicate 2.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 1.75 cm rep 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 4.5 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: GeoArchives

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - depth 4.5 cm rep 1


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 4.5 cm. Replicate 2.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Omongwa Pan

text: mimarks-survey

text: metagenome

characteristic: organism

text: GeoArchives

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rDNA

text: Omongwa saline sediment sample - depth 4.5 cm rep 2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 7.5 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (latitude)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 7.5 cm rep 1


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 7.5 cm. Replicate 2.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: GeoArchives

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - depth 7.5 cm rep 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 10.5 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Omongwa Pan

text: mimarks-survey

text: metagenome

characteristic: organism

text: GeoArchives

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rDNA

text: Omongwa saline sediment sample - depth 10.5 cm rep 1

characteristic: title


text: GFZ German Research Centre for Geosciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 10.5 cm. Replicate 2.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 10.5 cm rep 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 13.5 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: GeoArchives

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - depth 13.5 cm rep 1


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 13.5 cm. Replicate 2.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Omongwa Pan

text: mimarks-survey

text: metagenome

characteristic: organism

text: GeoArchives

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rDNA

text: Omongwa saline sediment sample - depth 13.5 cm rep 2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 23 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (latitude)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 23 cm rep 1


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 23 cm. Replicate 2.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: GeoArchives

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - depth 23 cm rep 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 28 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Omongwa Pan

text: mimarks-survey

text: metagenome

characteristic: organism

text: GeoArchives

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rDNA

text: Omongwa saline sediment sample - depth 28 cm rep 1

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 32.5 cm. Replicate 1.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 32.5 cm rep 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 32.5 cm. Replicate 2.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: GeoArchives

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - depth 32.5 cm rep 2


text: GFZ German Research Centre for Geosciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 37.5 cm. Replicate 1.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Omongwa Pan

text: mimarks-survey

text: metagenome

characteristic: organism

text: GeoArchives

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rDNA

text: Omongwa saline sediment sample - depth 37.5 cm rep 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 37.5 cm. Replicate 2.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (latitude)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 37.5 cm rep 2


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 42.5 cm. Replicate 1.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: GeoArchives

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - depth 42.5 cm rep 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 45.5 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Omongwa Pan

text: mimarks-survey

text: metagenome

characteristic: organism

text: GeoArchives

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rDNA

text: Omongwa saline sediment sample - depth 45.5 cm rep 1

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 45.5 cm. Replicate 2.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 45.5 cm rep 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 65 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: GeoArchives

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - depth 65 cm rep 1


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 75 cm. Replicate 1.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Omongwa Pan

text: mimarks-survey

text: metagenome

characteristic: organism

text: GeoArchives

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rDNA

text: Omongwa saline sediment sample - depth 75 cm rep 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 75 cm. Replicate 2.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (latitude)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 75 cm rep 2


text: GFZ German Research Centre for Geosciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 95 cm. Replicate 11

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: GeoArchives

characteristic: project name

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - depth 95 cm rep 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 105 cm. Replicate 1.

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Omongwa Pan

text: mimarks-survey

text: metagenome

characteristic: organism

text: GeoArchives

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rDNA

text: Omongwa saline sediment sample - depth 105 cm rep 1

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA extract of a sediment profile from Omongwa pan corresponding to the transition of the Late Glacial to the Holocene epoch. Depth 105 cm. Replicate 2.

characteristic: description

text: subtropical desert biome

text: saline pan

text: saline lake sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Omongwa Pan

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

text: GeoArchives

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: 16S rDNA

characteristic: target gene

text: Omongwa saline sediment sample - depth 105 cm rep 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Positive Control. E.Coli

text: subtropical desert biome

characteristic: environment (biome)

text: saline pan

characteristic: environment (feature)

text: saline lake sediment

text: Namibia

characteristic: geographic location (longitude)

text: Omongwa Pan

text: mimarks-survey

characteristic: investigation type

text: Escherichia coli

text: GeoArchives

characteristic: project name

text: Escherichia coli

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rDNA

text: Omongwa saline sediment sample - Positive Control


non-pregnant; PBS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: non-pregnant; PBS

tag: Namespace:University Medical Center Hamburg-Eppendorf

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: non-pregnant; PBS

characteristic: title


non-pregnant; H1N1; 3 days

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Medical Center Hamburg-Eppendorf

text: public

text: non-pregnant; H1N1; 3 days

text: house mouse

text: Mus musculus

text: Mus musculus

text: non-pregnant; H1N1; 3 days


non-pregnant; H1N1; 6 days

text: public

text: non-pregnant; H1N1; 6 days

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus

text: non-pregnant; H1N1; 6 days


pregnant; H1N1; 3 days

text: public

text: pregnant; H1N1; 3 days

text: house mouse

text: Mus musculus

text: Mus musculus

text: pregnant; H1N1; 3 days


pregnant; H1N1; 6 days

text: public

text: pregnant; H1N1; 6 days

text: house mouse

text: Mus musculus

text: Mus musculus

text: pregnant; H1N1; 6 days


pregnant; PBS; 3 days

text: public

text: pregnant; PBS; 3 days

text: house mouse

text: Mus musculus

text: Mus musculus

text: pregnant; PBS; 3 days


pregnant; PBS; 6 days

text: public

text: pregnant; PBS; 6 days

text: house mouse

text: Mus musculus

text: Mus musculus

text: pregnant; PBS; 6 days


text: ENS Lyon

text: public

tag: Namespace:ENS Lyon

text: Oscheius tipulae

text: Oscheius tipulae

text: JU74 x JU170

characteristic: strain

text: Bulk genomic DNA of a mapping population for mf34 allele


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: JU54 x J170

text: Bulk genomic DNA of a mapping population for mf35 allele


text: IRCCS istituto ortopedico Galeazzi

text: public

tag: Namespace:IRCCS istituto ortopedico Galeazzi

text: Laboratory of Clinical Chemistry and Microbiology, IRCCS Galeazzi Orthopedic Institute, Milan, Italy

characteristic: collected by

characteristic: collection date

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: staphylococcus epidermidis

characteristic: isolate

text: human infected knee prosthesis

characteristic: isolation source

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis

text: staphylococcus epidermidis clinical strain


text: ENS Lyon

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Oscheius tipulae

text: Oscheius tipulae

text: JU69 x JU170

text: Bulk genomic DNA of a mapping population for mf52 allele


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

text: Collected 20110404

characteristic: description

text: metagenome

characteristic: organism

text: metagenome

text: Metagenome from anaerobic digester at Fredericia WWTP

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AALBORG UNIVERSITY

text: public

characteristic: Submitter Id

text: Collected 20111214

text: metagenome

text: metagenome


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: JU71 x JU170

characteristic: strain

text: Bulk genomic DNA of a mapping population for mf53 allele


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: JU85 x JU170

text: Bulk genomic DNA of a mapping population for mf33 allele


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: JU163 x JU170

text: Bulk genomic DNA of a mapping population for mf86 allele


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: PS2373 X JU170

text: Bulk genomic DNA of a mapping population for sy447 allele


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: PS2458 X JU170

text: Bulk genomic DNA of a mapping population for sy463 allele


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: PS2458 x JU170

text: Bulk genomic DNA of a mapping population for sy465 allele


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: PS2565 x JU170

text: Bulk genomic DNA of a mapping population for sy493 allele


text: BANG

text: public

text: Mixed Stage

characteristic: dev stage

text: Oscheius tipulae

text: Oscheius tipulae

text: OTIPU-RNA-seq


text: University of Cambridge

text: public

tag: Namespace:University of Cambridge

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: HEK293T cells were maintained in DMEM supplemented with 10% fetal bovine serum. Transfection of siRNA was performed using Lipofectamine 2000, according to manufacturer’s instructions. On day 2, the medium was replaced and the second siRNA treatment was performed. On day 3 the medium was replaced . Cells were harvested on day 4. RNA was extracted with TriReagent (Sigma) following manufacturer’s instructions. Ribo-Zero TruSeq stranded mRNA libraries were prepared for each sample.

text: embryo

characteristic: developmental stage

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens


text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eggerthellaceae bacterium Marseille-P3241

text: Phoenicibacter massiliensis genome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

text: Ruminococcus sp. Marseille-P2780

characteristic: organism

text: Ruminococcus sp. Marseille-P2780

text: Provencibacterium massiliense genome

characteristic: title


status: KILLED

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: killed

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: strain


text: ENS Lyon

text: public

text: Oscheius tipulae

text: Oscheius tipulae

text: genomic DNA of the wild isolate strain JU170


text: URMITE

text: public

text: Varibaculum sp. Marseille-P3369

text: Varibaculum sp. Marseille-P3369

text: Varibaculum timonense genome


text: Uncultured bacterium

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Uncultured bacterium

characteristic: common name

text: uncultured bacterium

text: uncultured bacterium

characteristic: subject id


text: URMITE

characteristic: INSDC center name

text: public

text: Gordonibacter sp. Marseille-P3078

text: Gordonibacter sp. Marseille-P3078

text: Arabia massiliensis genome


text: CENTRE FOR GEOGENETICS

characteristic: INSDC first public

text: public

tag: Namespace:CENTRE FOR GEOGENETICS

text: horse

text: Equus caballus

text: Equus caballus

text: BEREL


text: URMITE

characteristic: INSDC last update

text: public

text: Cohnella sp. 6021052837

text: Cohnella sp. 6021052837

text: Cohnella massiliensis genome


text: URMITE

text: public

characteristic: INSDC status

text: Corynebacterium sp. Marseille-P2417

text: Corynebacterium sp. Marseille-P2417

text: Corynebacterium pacaense genome


E-MTAB-5557:Sample 1

text: public

characteristic: SRA accession

text: E-MTAB-5557:Sample 1

tag: Namespace:London School of Hygiene and Tropical Medicine

text: ArrayExpress

characteristic: broker name

text: Protocols: Mycobacterium tuberculosis H37Rv (SysteMTb) was grown in Middlebrook 7H9 medium supplemented with 0.4% glycerol, 0.085% NaCl, 0.5% BSA and 0.05% Tyloxapol in roller bottle culture (2 rpm at 37°C). For nitric oxide experiments, cultures were grown until mid-exponential phase and Diethylenetriamine/nitric oxide adduct (deta/NO, Sigma) was added to a final concentration of 1 mM. For transcriptomic analyses, samples were harvested from triplicate cultures immediately before addition of nitric oxide and 20 minutes, 2 and 24 hours after nitric oxide addition. For each sample, 25 mL of culture were spun down and isolation of RNA was performed using the FastRNA Pro blue kit from QBiogene/MP Bio according to manufacturer’s instructions. Cultures were first rapidly cooled by addition of ice directly to the culture prior to centrifugation. All RNA samples were treated with Turbo DNase free (Ambion) until any DNA contamination removed. Concentration and quality control of RNA samples was measured by Nanodrop (ND-1000, Labtech) and Agilent RNA chip (2100 Bioanalyser). For construction of directional RNA-seq libraries, Ribo-Zero™ and ScriptSeq™ v2 Kits (Epicentre) were used. Briefly, 5 µg of total RNA were used for ribosomal RNA removal using the Ribo-Zero rRNA removal kit (Gram-Positive Bacteria) following manufacturer’s instructions. 50 ng of Ribo-Zero-treated RNA were used to construct cDNA libraries for RNA sequencing using the ScriptSeq™ v2 Kit.

characteristic: description

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 1


E-MTAB-5557:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: London School of Hygiene and Tropical Medicine

text: public

text: E-MTAB-5557:Sample 10

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

characteristic: organism

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 10