text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: true

text: Daily

text: Not provided

text: No

text: true

text: false

text: true

text: false

text: true

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Not applicable

characteristic: altitude

text: I do not have this condition

characteristic: alzheimers

text: false

text: Never

text: I do not have this condition

characteristic: asd

text: Not applicable

text: Diagnosed by a medical professional (doctor, physician assistant)

characteristic: autoimmune

text: Overweight

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Two

text: false

text: I do not have this condition

text: Not provided

text: I do not have this condition

text: false

text: I do not have this condition

text: West

text: Yes

text: I do not have this condition

text: November

text: Fall

text: 2016-11-10 11:00

text: No

text: No

text: Never

text: USA

text: United States

text: United States

text: false

text: I use deodorant

text: Not provided

text: Not applicable

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: Filtered

text: Far West

text: dense settlement biome

text: human-associated habitat

text: feces

text: human-gut

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Indoors

text: Primarily breast milk

text: Occasionally (1-2 times/week)

text: Rarely (a few times/month)

text: Week

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: USA:CA

text: true

text: centimeters

text: Regularly (3-5 times/week)

text: Daily

text: human

text: Crohn's disease

text: Colonic Crohn's Disease

text: I do not have this condition

text: I do not have this condition

text: false

text: 1 year

text: Graduate or Professional degree

text: Not provided

text: No

text: Not provided

text: I do not have this condition

text: Regularly (3-5 times/week)

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

text: Rarely (less than once/week)

text: Never

text: false

text: true

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: human gut metagenome

text: true

text: false

text: UCSDMI

text: true

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: false

text: Occasionally (1-2 times/week)

text: Daily

text: true

text: Caucasian

text: Never

text: Regularly (3-5 times/week)

text: No

text: Never

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Not provided

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: Yes

text: CA

text: True

text: True

text: True

text: True

text: False

text: False

text: Never

text: Never

text: Daily

text: I do not have this condition

text: American Gut Project

text: false

text: 11 to 20

text: Daily

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Daily

text: Daily

text: Rarely (a few times/month)

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: true

text: Daily

text: Not provided

text: No

text: true

text: false

text: true

text: false

text: true

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Not applicable

text: I do not have this condition

text: I have not taken antibiotics in the past year.

text: false

text: Never

text: I do not have this condition

text: Not applicable

characteristic: bmi

text: Overweight

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Two

text: I tend to have normal formed stool - Type 3 and 4

text: false

text: I do not have this condition

characteristic: cancer

text: Not provided

text: I do not have this condition

text: false

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: West

text: Yes

characteristic: chickenpox

text: I do not have this condition

text: November

text: Fall

text: 2016-11-23 17:00

text: No

text: No

characteristic: contraceptive

text: Never

text: USA

characteristic: country

text: United States

text: United States

text: false

characteristic: csection

text: I use deodorant

text: Not provided

text: Not applicable

characteristic: depth

text: American Gut Project Stool Sample

characteristic: description

text: I do not have this condition

characteristic: diabetes

text: Not provided

text: Omnivore

text: true

text: false

characteristic: dog

text: I am right handed

text: Filtered

text: Far West

text: dense settlement biome

text: human-associated habitat

text: feces

text: human-gut

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Indoors

text: Primarily breast milk

text: Occasionally (1-2 times/week)

text: Rarely (a few times/month)

text: Week

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: USA:CA

text: I do not eat gluten because it makes me feel bad

text: true

text: centimeters

text: Regularly (3-5 times/week)

text: Daily

text: human

text: e3a0985a2dbbb76a94a9332aedf3270dc171c91600cfc9d0d20746af9a05ddc3268396e2cc107021bdc8d77d95fb5252014885d1fd659026668314bd102d428d

text: Crohn's disease

text: Colonic Crohn's Disease

text: I do not have this condition

text: I do not have this condition

text: false

text: I have lived in my current state of residence for more than a year.

text: 1 year

text: Graduate or Professional degree

text: Not provided

text: No

text: Not provided

text: I do not have this condition

text: Regularly (3-5 times/week)

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

text: Rarely (less than once/week)

text: Never

text: false

text: true

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: human gut metagenome

text: true

text: false

text: UCSDMI

text: true

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: false

text: Occasionally (1-2 times/week)

text: Daily

text: true

text: Caucasian

text: Never

text: Regularly (3-5 times/week)

text: No

text: Never

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Not provided

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: Yes

text: CA

text: True

text: True

text: True

text: True

text: False

text: False

text: Never

text: Never

text: Daily

text: I do not have this condition

text: American Gut Project

text: false

text: 11 to 20

text: Daily

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Daily

text: Daily

text: Rarely (a few times/month)

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: true

text: Rarely (a few times/month)

text: Not provided

text: No

text: true

text: false

text: false

text: false

text: false

text: Not provided

text: true

text: false

text: false

text: false

text: false

text: false

text: Not applicable

characteristic: altitude

text: I do not have this condition

characteristic: alzheimers

text: false

text: Never

text: I do not have this condition

characteristic: asd

text: Not applicable

text: I do not have this condition

characteristic: autoimmune

text: Overweight

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: One

text: false

text: Surgery only

text: I do not have this condition

text: true

text: I do not have this condition

text: West

text: Yes

text: I do not have this condition

text: December

text: Winter

text: 2016-12-18 05:30

text: No

text: No

text: Never

text: USA

text: United States

text: United States

text: false

text: I do not use deodorant or an antiperspirant

text: Not provided

text: Not applicable

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: City

text: Rocky Mountain

text: dense settlement biome

text: human-associated habitat

text: feces

text: human-gut

text: I do not have this condition

text: Daily

text: Indoors

text: Primarily breast milk

text: Rarely (less than once/week)

text: Daily

text: 6 months

text: Never

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: USA:CO

text: true

text: centimeters

text: Rarely (less than once/week)

text: Daily

text: human

text: b81f51c70bac085f2fe6956852a36d663765a899fc145f7f10ae42767dc14544353a27e1990c086af15c7a2fbc00f28686942b35eb4b0c215b30c6f7ea6e0fad

text: I do not have this condition

text: Not provided

text: Not provided

text: I do not have this condition

text: I do not have this condition

text: false

text: 6 months

text: Graduate or Professional degree

text: I do not have this condition

text: No

text: Not provided

text: I do not have this condition

text: Regularly (3-5 times/week)

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Daily

text: false

text: false

text: Not provided

text: false

text: false

text: false

text: true

text: false

text: false

text: Daily

text: Daily

text: human gut metagenome

text: false

text: false

text: UCSDMI

text: true

text: I do not have this condition

text: Daily

text: Rarely (less than once/week)

text: false

text: Occasionally (1-2 times/week)

text: Daily

text: true

text: Caucasian

text: Never

text: Rarely (less than once/week)

text: No

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Rarely (less than once/week)

text: Yes

text: male

text: I do not have this condition

text: 5-6 hours

text: Never

text: Yes

text: Not provided

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: CO

text: True

text: True

text: True

text: True

text: True

text: True

text: Never

text: Occasionally (1-2 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: true

text: More than 30

text: Daily

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

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text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Never

text: Never

text: Never

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Never


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: Not provided

text: false

text: false

text: Not provided

text: true

text: Daily

text: Not provided

text: No

text: false

text: false

text: false

text: true

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Not applicable

text: Not provided

text: false

text: Not provided

text: Not provided

text: Not applicable

text: Not provided

characteristic: bmi

text: Normal

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Not provided

text: Not provided

text: Not provided

text: Not provided

characteristic: cancer

text: Not provided

text: Not provided

text: false

characteristic: cat

text: Not provided

characteristic: cdiff

text: West

text: Yes

characteristic: chickenpox

text: Not provided

text: December

text: Winter

text: 2016-12-15 08:00

text: Not provided

text: Not provided

characteristic: contraceptive

text: Never

text: USA

text: United States

text: Not provided

text: false

text: I use deodorant

text: Not provided

text: Not applicable

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: Filtered

text: Not provided

text: Far West

text: dense settlement biome

text: human-associated habitat

text: feces

text: human-gut

text: Not provided

text: Occasionally (1-2 times/week)

text: Indoors

text: Not provided

text: Not provided

text: Rarely (a few times/month)

text: Year

text: Not provided

text: Not provided

text: Not provided

text: USA:CA

text: Not provided

text: true

text: centimeters

text: Not provided

text: Not provided

text: human

text: 673c8ce01f6c4b5120fb00380499db5eeb6a2fb55f33a66a36d79a28f321105b432b54532ecd02900640e027e6baa65fe94b194fa11f3a0eaf97f6abf95c9417

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: false

text: Not provided

text: 1 year

text: Not provided

text: Not provided

text: No

text: Not provided

text: I do not have this condition

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: I do not have this condition

text: Not provided

text: Not provided

text: false

text: true

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Not provided

text: Not provided

text: human gut metagenome

text: false

text: Not provided

text: UCSDMI

text: true

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: true

text: Caucasian

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Stool

text: human gut metagenome

text: Not provided

text: No

text: unspecified

text: Not provided

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: CA

text: True

text: True

text: True

text: True

text: False

text: False

text: Not provided

text: Not provided

text: Occasionally (1-2 times/week)

text: Not provided

text: American Gut Project

text: false

text: More than 30

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Remained stable

text: kilograms

text: Not provided

text: Not provided


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: false

text: false

text: I do not have this condition

text: false

text: Never

text: Not provided

text: No

text: false

text: false

text: false

text: true

text: false

text: Not provided

text: true

text: false

text: false

text: false

text: false

text: false

text: Not applicable

text: I do not have this condition

text: false

text: Not provided

text: I do not have this condition

text: Not applicable

text: Obese

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Two

text: false

text: I do not have this condition

text: Not provided

text: I do not have this condition

text: false

text: I do not have this condition

text: Midwest

text: Yes

text: I do not have this condition

text: December

text: Winter

text: 2016-12-24 13:20

text: Yes

text: No

text: Rarely (a few times/month)

text: USA

characteristic: country

text: United States

text: United States

text: false

characteristic: csection

text: I use deodorant

text: Not provided

text: Not applicable

characteristic: depth

text: American Gut Project Stool Sample

characteristic: description

text: I do not have this condition

characteristic: diabetes

text: Not provided

text: Omnivore

text: true

text: false

characteristic: dog

text: I am left handed

text: Filtered

text: I don't drink

text: Plains

text: dense settlement biome

text: human-associated habitat

text: feces

text: human-gut

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Indoors

text: Primarily infant formula

text: Never

text: Occasionally (1-2 times/week)

text: I have not gotten the flu vaccine in the past year.

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: USA:MO

text: No

text: true

text: centimeters

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: human

text: d6af4c78391c96d9329fa04f783b5194477a3d56ffc5cb3aaff1a5e843042c55830f6e77f45316ea219036c546bbd179abf9b480adad79b150b16ae2c294fed8

text: I do not have this condition

text: Not provided

text: Not provided

text: I do not have this condition

text: I do not have this condition

text: false

text: I have not been outside of my country of residence in the past year.

text: Bachelor's degree

text: I do not have this condition

text: No

text: Not provided

text: I do not have this condition

text: Regularly (3-5 times/week)

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Not provided

text: false

text: true

text: Not provided

text: false

text: true

text: true

text: false

text: false

text: false

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: human gut metagenome

text: false

text: false

text: UCSDMI

text: true

text: I do not have this condition

text: Never

text: Occasionally (1-2 times/week)

text: false

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: true

text: Caucasian

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: One

text: No

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Rarely (less than once/week)

text: Not provided

text: female

text: I do not have this condition

text: 6-7 hours

text: Never

text: Yes

text: Not provided

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: MO

text: True

text: True

text: False

text: True

text: False

text: True

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: false

text: 6 to 10

text: Regularly (3-5 times/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Never

text: Occasionally (1-2 times/week)

text: Never

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: C. difficile

characteristic: common name

text: Australia

characteristic: geographic location (country and/or sea)

text: Pig

characteristic: host

text: not applicable

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: isolate

text: Piggery

text: Clostridioides difficile

characteristic: organism

text: Clostridioides difficile

characteristic: title

type: has member


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: C. difficile

characteristic: description

text: Australia

text: Human

text: not applicable

text: Homo sapiens

text: Hospital

text: Clostridioides difficile

text: Clostridioides difficile


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JUSTUS LIEBIG UNIVERSITY

text: public

tag: Namespace:JUSTUS LIEBIG UNIVERSITY

text: Enterobacter cancerogenus

text: Enterobacter cancerogenus


text: Medical University of Graz

text: public

characteristic: SRA accession

tag: Namespace:Medical University of Graz

characteristic: Submitter Id

characteristic: collection date

text: Human

characteristic: environment (biome)

text: Human body

characteristic: environment (feature)

text: Human GIT biopsy

characteristic: environment (material)

text: Austria

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human metagenome

text: Human archaeome

characteristic: project name

text: human metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Human GIT biopsy archaeome


Biopsyminelutecontrol

text: Medical University of Graz

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Biopsyminelutecontrol

text: Human

text: Human body

text: Human GIT biopsy

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: human metagenome

characteristic: organism

text: Human archaeome

text: human metagenome

text: Illumina MiSeq

text: Human GIT biopsy archaeome

characteristic: title


BiopsypcrC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medical University of Graz

text: public

characteristic: SRA accession

text: BiopsypcrC

characteristic: Submitter Id

characteristic: collection date

text: Human

text: Human body

text: Human GIT biopsy

text: Austria

text: human-gut

text: metagenome

text: human metagenome

text: Human archaeome

text: human metagenome

text: Illumina MiSeq

text: Human GIT biopsy archaeome


text: INRA-CMSE

text: public

text: grassland

characteristic: current land use

text: The soil was sieved at 4 mm and homogenized before gamma-irradiation (35 kGy; Conservatome, Dagneux, France). The sterility of the irradiated soil was verified by spreading serial dilutions of the soil onto nutrient agar plates.Microcosms were set up by placing 40 g of dry sterile soil in 150-ml hermetically sealed plasma flasks. Sterile soil microcosms were inoculated with suspensions of the same soil, but not sterilized, as described previously (Baumann et al. 2012, Philippot et al. 2013, Tardy et al. 2014; Vivant et al. 2013). An initial soil suspension was prepared by mixing 100 g soil (equivalent dry mass) with 300 ml sterile distilled water using a Waring blender. After blending for 5 min at maximum speed, the soil suspension was serial diluted. Three levels of dilution of the soil suspension were used as inocula to create a gradient of diversity, that is, undiluted (100; D1), 1/10^3 dilution (D2) and 1/10^5 dilution (D3); and the soil moisture was fixed at 60 % water-holding capacity. After inoculation, the microcosms were pre-incubated for 6 weeks at 20�C with weekly aeration and verification of soil water content to allow colonization and stabilization of the inoculated communities in terms of density and structure. On day 0 (T0, after 6 weeks of pre-incubation), for each diversity level, the microcosms were either amended with 13C labelled wheat residues (dried, grounded <1 mm, 96 atom% 13C-labelled), incorporated at a rate of 5 mg g-1, or not amended (control). Incorporation was made homogeneously by mixing wheat residues with soil. Soil in control microcosms was also mixed at T0 to avoid any bias due to the mixing step.

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: France

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGTCTAGTAC

characteristic: multiplex identifiers

text: DNA was extracted using GnS-GII protocol as described in Terrat et al , 2012

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pH

text: F479 (5-CAGCMGCYGCNGTAANAC-3) R888 (5-CCGYCAATTCMTTTRAGT-3)

characteristic: pcr primers

unit: g

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

unit: % sand/silt/clay

characteristic: texture

text: D1C1-16S-undiluted-diversity-sample-repetition1

unit: µg/L

characteristic: total nitrogen

unit: g/kg

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: current land use

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: CGATCGTATA

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rRNA gene

text: D1C2-16S-undiluted-diversity-sample-repetition2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

text: public

text: grassland

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: France

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGTGTCTCTA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pH

characteristic: pcr primers

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: texture

text: D1C3-16S-undiluted-diversity-sample-repetition3

characteristic: total nitrogen

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: current land use

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: CAGACGTCTG

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rRNA gene

text: D2C1-16S-1/10^3-diluted-diversity-sample-repetition1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

text: public

text: grassland

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: France

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGTATGCGAC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pH

characteristic: pcr primers

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: texture

text: D2C2-16S-1/10^3-diluted-diversity-sample-repetition2

characteristic: total nitrogen

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: current land use

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: CGTAGACTAG

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rRNA gene

text: D2C3-16S-1/10^3-diluted-diversity-sample-repetition3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

text: public

text: grassland

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: France

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGTGAGCTGA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pH

characteristic: pcr primers

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: texture

text: D3C1-16S-1/10^5-diluted-diversity-sample-repetition1

characteristic: total nitrogen

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: current land use

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: CAGTAGACGT

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 16S rRNA gene

text: D3C2-16S-1/10^5-diluted-diversity-sample-repetition2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

text: public

text: grassland

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: France

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGCGTATACA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pH

characteristic: pcr primers

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: texture

text: D3C3-16S-1/10^5-diluted-diversity-sample-repetition3

characteristic: total nitrogen

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: current land use

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: CGTCTAGTAC

text: soil metagenome

characteristic: organism

text: FR1 (5-ANCCATTCAATCGGTANT-3) FF390 (5-CGATAACGAACGAGACCT-3)

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rRNA gene

text: D1C1-18S-undiluted-diversity-sample-repetition1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

text: public

text: grassland

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: France

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CATCGAGCAG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pH

characteristic: pcr primers

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rRNA gene

characteristic: target gene

characteristic: texture

text: D1C2-18S-undiluted-diversity-sample-repetition2

characteristic: total nitrogen

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: current land use

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: CAGTAGACGT

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rRNA gene

text: D1C3-18S-undiluted-diversity-sample-repetition3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

text: public

text: grassland

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: France

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CACGTGTCGC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pH

characteristic: pcr primers

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rRNA gene

characteristic: target gene

characteristic: texture

text: D2C1-18S-1/10^3-diluted-diversity-sample-repetition1

characteristic: total nitrogen

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: current land use

text: The soil was sieved at 4 mm and homogenized before gamma-irradiation (35 kGy; Conservatome, Dagneux, France). The sterility of the irradiated soil was verified by spreading serial dilutions of the soil onto nutrient agar plates.Microcosms were set up by placing 40 g of dry sterile soil in 150-ml hermetically sealed plasma flasks. Sterile soil microcosms were inoculated with suspensions of the same soil, but not sterilized, as described previously (Baumann et al. 2012, Philippot et al. 2013, Tardy et al. 2014; Vivant et al. 2013). An initial soil suspension was prepared by mixing 100 g soil (equivalent dry mass) with 300 ml sterile distilled water using a Waring blender. After blending for 5 min at maximum speed, the soil suspension was serial diluted. Three levels of dilution of the soil suspension were used as inocula to create a gradient of diversity, that is, undiluted (100; D1), 1/10^3 dilution (D2) and 1/10^5 dilution (D3); and the soil moisture was fixed at 60 % water-holding capacity. After inoculation, the microcosms were pre-incubated for 6 weeks at 20�C with weekly aeration and verification of soil water content to allow colonization and stabilization of the inoculated communities in terms of density and structure. On day 0 (T0, after 6 weeks of pre-incubation), for each diversity level, the microcosms were either amended with 13C labelled wheat residues (dried, grounded <1 mm, 96 atom% 13C-labelled), incorporated at a rate of 5 mg g-1, or not amended (control). Incorporation was made homogeneously by mixing wheat residues with soil. Soil in control microcosms was also mixed at T0 to avoid any bias due to the mixing step.

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: CGTACAGTCA

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rRNA gene

text: D2C2-18S-1/10^3-diluted-diversity-sample-repetition2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

text: public

text: grassland

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: France

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CATAGTGACA

characteristic: multiplex identifiers

text: DNA was extracted using GnS-GII protocol as described in Terrat et al , 2012

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pH

characteristic: pcr primers

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rRNA gene

characteristic: target gene

characteristic: texture

text: D2C3-18S-1/10^3-diluted-diversity-sample-repetition3

characteristic: total nitrogen

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: current land use

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: CGTGCTGTGT

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rRNA gene

text: D3C1-18S-1/10^5-diluted-diversity-sample-repetition1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

text: public

text: grassland

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: France

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGATCTGTCG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pH

characteristic: pcr primers

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: soil

characteristic: soil environmental package

text: 18S rRNA gene

characteristic: target gene

characteristic: texture

text: D3C2-18S-1/10^5-diluted-diversity-sample-repetition2

characteristic: total nitrogen

characteristic: total organic carbon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: current land use

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: CGACGTGACT

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

text: 18S rRNA gene

text: D3C3-18S-1/10^5-diluted-diversity-sample-repetition3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: gozbayram

text: public

text: uncultured bacterium

text: uncultured bacterium


text: gozbayram

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: uncultured bacterium

text: uncultured bacterium

text: Rumen


text: gozbayram

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: uncultured bacterium

text: uncultured bacterium

text: Manure


text: gozbayram

text: public

text: uncultured bacterium

text: uncultured bacterium


text: Medical University of Graz

text: public

characteristic: collection date

text: Cave

characteristic: environment (biome)

text: Cave microbiome

text: Calcite raft

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: cave metagenome

text: The influence of human exploration on the microbiome of the Su Bentu cave in Sardinia, Italy

text: cave metagenome

text: Illumina MiSeq

text: Cave microbiome


characteristic: ENA-CHECKLIST

text: Medical University of Graz

text: public

text: Cave

text: Cave microbiome

characteristic: environment (feature)

text: Moonmilk

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome

text: cave metagenome

characteristic: organism

characteristic: project name

text: cave metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Cave microbiome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medical University of Graz

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Cave

text: Cave microbiome

text: Limestone sand

text: Italy

text: metagenome

text: cave metagenome

text: cave metagenome

text: Illumina MiSeq

text: Cave microbiome


text: Medical University of Graz

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Cave

characteristic: environment (biome)

text: Cave microbiome

text: Manganese Oxide deposit

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: cave metagenome

text: cave metagenome

text: Illumina MiSeq

text: Cave microbiome


characteristic: ENA-CHECKLIST

text: Medical University of Graz

text: public

text: Cave

text: Cave microbiome

characteristic: environment (feature)

text: Manganese Oxide

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: cave metagenome

characteristic: organism

characteristic: project name

text: cave metagenome

text: Illumina MiSeq

text: Cave microbiome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: gozbayram

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: uncultured bacterium

characteristic: title


text: P3 Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:P3 Institute

characteristic: Submitter Id

text: Clone evolved for approx 150 bacterial generations in the presences of phage (SBW25phi2)

characteristic: description

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid only_rep6


characteristic: ENA-CHECKLIST

text: P3 Institute

text: public

text: Clone evolved for approx 150 bacterial generations in the absence of mobile genetic elements

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid only_rep6


text: P3 Institute

text: public

text: Clone evolved for approx 150 bacterial generations in the presences of plasmid (pQBR103)

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid only_rep6


text: P3 Institute

text: public

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid only_rep3


text: P3 Institute

text: public

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid only_rep4


text: P3 Institute

text: public

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid only_rep5


text: P3 Institute

text: public

text: Clone evolved for approx 150 bacterial generations in the presence of phage (SBW25phi2) and plasmid (pQBR103)

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid and phage_rep1


text: P3 Institute

text: public

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid and phage_rep2


text: P3 Institute

text: public

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid and phage_rep3


text: P3 Institute

text: public

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid and phage_rep4


text: P3 Institute

text: public

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid and phage_rep5


text: P3 Institute

text: public

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Plasmid and phage_rep6


Ercc1 -/delta liver 1

text: UMCU

text: public

text: Ercc1 -/delta liver 1

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta liver 1


Ercc1 -/delta liver 2

text: UMCU

text: public

text: Ercc1 -/delta liver 2

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta liver 2


Ercc1 -/delta liver 3

text: UMCU

text: public

text: Ercc1 -/delta liver 3

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta liver 3


Ercc1 -/delta smallintestine 1

text: UMCU

text: public

text: Ercc1 -/delta smallintestine 1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta smallintestine 1


Ercc1 -/delta smallintestine 2

text: UMCU

text: public

text: Ercc1 -/delta smallintestine 2

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta smallintestine 2


Ercc1 -/delta smallintestine 3

text: UMCU

text: public

text: Ercc1 -/delta smallintestine 3

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta smallintestine 3


WT liver 1

text: UMCU

text: public

text: WT liver 1

text: house mouse

text: Mus musculus

text: Mus musculus

text: WT liver 1


WT liver 2

text: UMCU

text: public

text: WT liver 2

text: house mouse

text: Mus musculus

text: Mus musculus

text: WT liver 2


WT liver 3

text: UMCU

text: public

text: WT liver 3

text: house mouse

text: Mus musculus

text: Mus musculus

text: WT liver 3


WT smallintestine 2

text: UMCU

text: public

text: WT smallintestine 2

text: house mouse

text: Mus musculus

text: Mus musculus

text: WT smallintestine 2


WT smallintestine 3

text: UMCU

text: public

text: WT smallintestine 3

text: house mouse

text: Mus musculus

text: Mus musculus

text: WT smallintestine 3


Ercc1 -/delta tail 3

text: UMCU

text: public

text: Ercc1 -/delta tail 3

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta tail 3


Ercc1 -/delta tail 2

text: UMCU

text: public

text: Ercc1 -/delta tail 2

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta tail 2


Ercc1 -/delta tail 1

text: UMCU

text: public

text: Ercc1 -/delta tail 1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta tail 1


WT tail 1

text: UMCU

text: public

text: WT tail 1

text: house mouse

text: Mus musculus

text: Mus musculus

text: WT tail 1


WT tail 2

text: UMCU

text: public

text: WT tail 2

text: house mouse

text: Mus musculus

text: Mus musculus

text: WT tail 2


WT tail 3

text: UMCU

text: public

text: WT tail 3

text: house mouse

text: Mus musculus

text: Mus musculus

text: WT tail 3


Ercc1 -/delta liver 2B

text: UMCU

text: public

text: Ercc1 -/delta liver 2B

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 -/delta liver 2B


Ercc1 WT liver 1B

text: UMCU

text: public

text: Ercc1 WT liver 1B

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 WT liver 1B


Ercc1 WT liver 2B

text: UMCU

text: public

text: Ercc1 WT liver 2B

text: house mouse

text: Mus musculus

text: Mus musculus

text: Ercc1 WT liver 2B


Hvir-WT-a

text: MPICE

text: public

text: Hvir-WT-a

text: tobacco budworm

text: Heliothis virescens larvae fed on Arabidopsis wild-type plants

text: larva

text: Heliothis virescens

text: Heliothis virescens

text: whole larva

text: Heliothis virescens RNAseq


Hvir-WT-b

text: MPICE

text: public

text: Hvir-WT-b

text: tobacco budworm

text: larva

text: Heliothis virescens

text: Heliothis virescens

text: whole larva

text: Heliothis virescens RNAseq


Hvir-WT-c

text: MPICE

text: public

text: Hvir-WT-c

text: tobacco budworm

text: larva

text: Heliothis virescens

text: Heliothis virescens

text: whole larva

text: Heliothis virescens RNAseq


Hvir-MUT-a

text: MPICE

text: public

text: Hvir-MUT-a

text: tobacco budworm

text: Heliothis virescens larvae fed on Arabidopsis mutant (quadGS) plants

text: larva

text: Heliothis virescens

text: Heliothis virescens

text: whole larva

text: Heliothis virescens RNAseq


Hvir-MUT-b

text: MPICE

text: public

text: Hvir-MUT-b

text: tobacco budworm

text: larva

text: Heliothis virescens

text: Heliothis virescens

text: whole larva

text: Heliothis virescens RNAseq


Hvir-MUT-c

text: MPICE

text: public

text: Hvir-MUT-c

text: tobacco budworm

text: larva

text: Heliothis virescens

text: Heliothis virescens

text: whole larva

text: Heliothis virescens RNAseq


Pbra-WT-a

text: MPICE

text: public

text: Pbra-WT-a

text: large cabbage white

text: Pieris brassicae larvae fed on Arabidopsis wild-type plants

text: larva

text: Pieris brassicae

text: Pieris brassicae

text: whole larva

text: Pieris brassicae RNAseq


Pbra-WT-b

text: MPICE

text: public

text: Pbra-WT-b

text: large cabbage white

text: larva

text: Pieris brassicae

text: Pieris brassicae

text: whole larva

text: Pieris brassicae RNAseq


Pbra-WT-c

text: MPICE

text: public

text: Pbra-WT-c

text: large cabbage white

text: larva

text: Pieris brassicae

text: Pieris brassicae

text: whole larva

text: Pieris brassicae RNAseq


Pbra-MUT-a

text: MPICE

text: public

text: Pbra-MUT-a

text: large cabbage white

text: Pieris brassicae larvae fed on Arabidopsis mutant (quadGS) plants

text: larva

text: Pieris brassicae

text: Pieris brassicae

text: whole larva

text: Pieris brassicae RNAseq


Pbra-MUT-b

text: MPICE

text: public

text: Pbra-MUT-b

text: large cabbage white

text: larva

text: Pieris brassicae

text: Pieris brassicae

text: whole larva

text: Pieris brassicae RNAseq


Pbra-MUT-c

text: MPICE

text: public

text: Pbra-MUT-c

text: large cabbage white

text: larva

text: Pieris brassicae

text: Pieris brassicae

text: whole larva

text: Pieris brassicae RNAseq


text: Mouse

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: mouse feacal microbiota

text: Mus musculus

characteristic: strain

text: Mus Musculus


text: Chicken

text: SC

text: public

text: chicken

text: Gallus gallus

characteristic: organism

text: Caecum microbiota

text: Gallus gallus

text: Gallus Gallus


E-MTAB-5499:Sample 10

text: public

text: E-MTAB-5499:Sample 10

tag: Namespace:DNA Sequencing and Genomics Lab Institute of Biotechnology University of Helsinki

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: Protocols: LAB were grown separately in individual cultures or in mixed cultures on a glucose-containing growth medium (MRS) under microaerobic conditions at 25 °C, samples were taken at three time points (3, 5 and 11 h) RNA extraction and library construction were done analogously as in the study (Andreevskaya M et al., 2015. Appl. Environ. Microbiol. 81:3800–3811, doi: 10.1128/AEM.00320-15). Briefly, cell metabolism and RNAase activity were inhibited by the treatment with a cold 10:1 mixture of ethanol-phenol, samples were centrifuged and immediately frozen. The cells were disrupted by a mixer mill and RNA was extracted by the Rneasy Plant Mini Kit (Qiagen) with DNAase treatment. Ribosomal RNAs were omitted from the total RNA. RNA-seq libraries were produced using Ovation RNA-seq System V2 (NuGEN). The obtained dsDNA was sheared using sonication, followed by the polishing of the obtained fragments with T4 DNA polymerase and the ligation of adapters for SOLiD sequencing. Libraries were size selected.

text: not applicable

characteristic: isolate

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

characteristic: replicate

text: Lactobacillus oligofermentans

text: Sample 10


E-MTAB-5499:Sample 11

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DNA Sequencing and Genomics Lab Institute of Biotechnology University of Helsinki

characteristic: INSDC center name

text: public

text: E-MTAB-5499:Sample 11

text: ArrayExpress

text: not applicable

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Sample 11


E-MTAB-5499:Sample 12

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5499:Sample 12

text: ArrayExpress

text: not applicable

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Sample 12

characteristic: title


E-MTAB-5499:Sample 34

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-5499:Sample 34

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: not applicable

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Sample 34


E-MTAB-5499:Sample 35

text: public

text: E-MTAB-5499:Sample 35

text: ArrayExpress

text: not applicable

text: Lactobacillus oligofermentans

characteristic: organism

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Sample 35


E-MTAB-5499:Sample 36

text: public

text: E-MTAB-5499:Sample 36

characteristic: batch

text: ArrayExpress

text: not applicable

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Sample 36


E-MTAB-5499:Sample 57

text: public

text: E-MTAB-5499:Sample 57

text: ArrayExpress

characteristic: broker name

text: not applicable

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Sample 57


E-MTAB-5499:Sample 58

text: public

text: E-MTAB-5499:Sample 58

text: ArrayExpress

text: not applicable

characteristic: isolate

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

text: Sample 58


E-MTAB-5499:Sample 59

text: public

text: E-MTAB-5499:Sample 59

text: ArrayExpress

text: not applicable

text: Lactobacillus oligofermentans

text: Lactobacillus oligofermentans

characteristic: replicate

text: Lactobacillus oligofermentans

text: Sample 59


E-MTAB-5499:Sample 16

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5499:Sample 16

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 16


E-MTAB-5499:Sample 17

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5499:Sample 17

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 17


E-MTAB-5499:Sample 18

characteristic: External Id

text: public

text: E-MTAB-5499:Sample 18

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 18


E-MTAB-5499:Sample 40

characteristic: INSDC center name

text: public

text: E-MTAB-5499:Sample 40

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 40


E-MTAB-5499:Sample 41

characteristic: INSDC first public

text: public

text: E-MTAB-5499:Sample 41

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 41


E-MTAB-5499:Sample 63

characteristic: INSDC last update

text: public

text: E-MTAB-5499:Sample 63

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 63


E-MTAB-5499:Sample 64

text: public

characteristic: INSDC status

text: E-MTAB-5499:Sample 64

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 64


E-MTAB-5499:Sample 65

text: public

text: E-MTAB-5499:Sample 65

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 65

characteristic: title


E-MTAB-5499:Sample 22

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5499:Sample 22

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 22


E-MTAB-5499:Sample 23

text: public

characteristic: SRA accession

text: E-MTAB-5499:Sample 23

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 23


E-MTAB-5499:Sample 24

text: public

text: E-MTAB-5499:Sample 24

characteristic: Submitter Id

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 24


E-MTAB-5499:Sample 45

text: public

text: E-MTAB-5499:Sample 45

text: ArrayExpress

characteristic: description

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 45


E-MTAB-5499:Sample 46

text: public

text: E-MTAB-5499:Sample 46

text: ArrayExpress

text: not applicable

text: mixed sample

characteristic: organism

text: mixed sample

text: mixed sample

text: Sample 46


E-MTAB-5499:Sample 47

text: public

text: E-MTAB-5499:Sample 47

characteristic: batch

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 47


E-MTAB-5499:Sample 69

text: public

text: E-MTAB-5499:Sample 69

text: ArrayExpress

characteristic: broker name

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 69


E-MTAB-5499:Sample 70

text: public

text: E-MTAB-5499:Sample 70

text: ArrayExpress

text: not applicable

characteristic: isolate

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 70


E-MTAB-5499:Sample 71

text: public

text: E-MTAB-5499:Sample 71

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

characteristic: replicate

text: mixed sample

text: Sample 71


E-MTAB-5499:Sample 1

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5499:Sample 1

text: ArrayExpress

text: not applicable

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium

text: Sample 1


E-MTAB-5499:Sample 2

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5499:Sample 2

text: ArrayExpress

text: not applicable

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium

text: Sample 2


E-MTAB-5499:Sample 25

characteristic: External Id

text: public

text: E-MTAB-5499:Sample 25

text: ArrayExpress

text: not applicable

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium

text: Sample 25


E-MTAB-5499:Sample 26

characteristic: INSDC center name

text: public

text: E-MTAB-5499:Sample 26

text: ArrayExpress

text: not applicable

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium

text: Sample 26


E-MTAB-5499:Sample 27

characteristic: INSDC first public

text: public

text: E-MTAB-5499:Sample 27

text: ArrayExpress

text: not applicable

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium

text: Sample 27


E-MTAB-5499:Sample 3

characteristic: INSDC last update

text: public

text: E-MTAB-5499:Sample 3

text: ArrayExpress

text: not applicable

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium

text: Sample 3


E-MTAB-5499:Sample 48

text: public

characteristic: INSDC status

text: E-MTAB-5499:Sample 48

text: ArrayExpress

text: not applicable

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium

text: Sample 48


E-MTAB-5499:Sample 49

text: public

text: E-MTAB-5499:Sample 49

text: ArrayExpress

text: not applicable

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium

text: Sample 49

characteristic: title


E-MTAB-5499:Sample 50

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5499:Sample 50

text: ArrayExpress

text: not applicable

text: Lactococcus piscium

text: Lactococcus piscium

text: Lactococcus piscium

text: Sample 50


E-MTAB-5499:Sample 13

text: public

characteristic: SRA accession

text: E-MTAB-5499:Sample 13

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 13


E-MTAB-5499:Sample 14

text: public

text: E-MTAB-5499:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 14


E-MTAB-5499:Sample 15

text: public

text: E-MTAB-5499:Sample 15

text: ArrayExpress

characteristic: description

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 15


E-MTAB-5499:Sample 37

text: public

text: E-MTAB-5499:Sample 37

text: ArrayExpress

text: not applicable

text: mixed sample

characteristic: organism

text: mixed sample

text: mixed sample

text: Sample 37


E-MTAB-5499:Sample 38

text: public

text: E-MTAB-5499:Sample 38

characteristic: batch

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 38


E-MTAB-5499:Sample 39

text: public

text: E-MTAB-5499:Sample 39

text: ArrayExpress

characteristic: broker name

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 39


E-MTAB-5499:Sample 60

text: public

text: E-MTAB-5499:Sample 60

text: ArrayExpress

text: not applicable

characteristic: isolate

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 60


E-MTAB-5499:Sample 61

text: public

text: E-MTAB-5499:Sample 61

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

characteristic: replicate

text: mixed sample

text: Sample 61


E-MTAB-5499:Sample 62

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5499:Sample 62

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 62


E-MTAB-5499:Sample 28

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5499:Sample 28

text: ArrayExpress

text: not applicable

text: Leuconostoc gelidum subsp. gasicomitatum

text: Sample 28


E-MTAB-5499:Sample 29

characteristic: External Id

text: public

text: E-MTAB-5499:Sample 29

text: ArrayExpress

text: not applicable

text: Sample 29


E-MTAB-5499:Sample 30

characteristic: INSDC center name

text: public

text: E-MTAB-5499:Sample 30

text: ArrayExpress

text: not applicable

text: Sample 30


E-MTAB-5499:Sample 31

characteristic: INSDC first public

text: public

text: E-MTAB-5499:Sample 31

text: ArrayExpress

text: not applicable

text: Sample 31


E-MTAB-5499:Sample 32

characteristic: INSDC last update

text: public

text: E-MTAB-5499:Sample 32

text: ArrayExpress

text: not applicable

text: Sample 32


E-MTAB-5499:Sample 33

text: public

characteristic: INSDC status

text: E-MTAB-5499:Sample 33

text: ArrayExpress

text: not applicable

text: Sample 33


E-MTAB-5499:Sample 4

text: public

text: E-MTAB-5499:Sample 4

text: ArrayExpress

text: not applicable

text: Sample 4

characteristic: title


E-MTAB-5499:Sample 5

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5499:Sample 5

text: ArrayExpress

text: not applicable

text: Sample 5


E-MTAB-5499:Sample 51

text: public

characteristic: SRA accession

text: E-MTAB-5499:Sample 51

text: ArrayExpress

text: not applicable

text: Sample 51


E-MTAB-5499:Sample 52

text: public

text: E-MTAB-5499:Sample 52

characteristic: Submitter Id

text: ArrayExpress

text: not applicable

text: Sample 52


E-MTAB-5499:Sample 53

text: public

text: E-MTAB-5499:Sample 53

text: ArrayExpress

characteristic: description

text: not applicable

text: Sample 53


E-MTAB-5499:Sample 54

text: public

text: E-MTAB-5499:Sample 54

text: ArrayExpress

text: not applicable

characteristic: organism

text: Sample 54


E-MTAB-5499:Sample 55

text: public

text: E-MTAB-5499:Sample 55

characteristic: batch

text: ArrayExpress

text: not applicable

text: Sample 55


E-MTAB-5499:Sample 56

text: public

text: E-MTAB-5499:Sample 56

text: ArrayExpress

characteristic: broker name

text: not applicable

text: Sample 56


E-MTAB-5499:Sample 6

text: public

text: E-MTAB-5499:Sample 6

text: ArrayExpress

text: not applicable

characteristic: isolate

text: Sample 6


E-MTAB-5499:Sample 7

text: public

text: E-MTAB-5499:Sample 7

text: ArrayExpress

text: not applicable

characteristic: replicate

text: Sample 7


E-MTAB-5499:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5499:Sample 8

text: ArrayExpress

text: not applicable

text: Sample 8


E-MTAB-5499:Sample 9

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5499:Sample 9

text: ArrayExpress

text: not applicable

text: Sample 9


E-MTAB-5499:Sample 19

characteristic: External Id

text: public

text: E-MTAB-5499:Sample 19

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 19


E-MTAB-5499:Sample 20

characteristic: INSDC center name

text: public

text: E-MTAB-5499:Sample 20

text: ArrayExpress

text: not applicable

text: mixed sample

text: mixed sample

text: mixed sample

text: Sample 20