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text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: Plot_SEW9B Populus wood PA066

text: temperate broadleaf forest

text: beech forest

text: wood

text: plant-associated

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured soil fungus

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: uncultured soil fungus

text: pyrosequencing

characteristic: sequencing method


CECT 8899

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UVEG

text: public

text: CECT 8899

characteristic: collection date

text: water

characteristic: environment (biome)

text: seawater

characteristic: environment (feature)

text: seawater of Mallipo, Korea.

characteristic: environment (material)

text: South Korea

unit: m

characteristic: geographic location (depth)

text: mimarks-survey

text: Loktanella marina

text: Whole genome sequencing of Loktanella marina CECT 8899, type strain

text: Loktanella marina

text: Illumina Miseq

text: CECT 8899

characteristic: strain

text: Loktanella marina CECT 8899

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: External Id

text: YORK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:YORK UNIVERSITY

characteristic: Submitter Id

text: compost

text: compost

text: wheat straw compost

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: compost metagenome

text: compost 8

text: compost metagenome

text: pyrosequencing

type: has member


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:iBV - Institute of Biology Valrose CNRS UMR7277, Inserm U1091, UNS

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: For each sample 8 thirteen dpc testis were pooled from Wt1-CreTg/+;Nrg1fl/fl mice and Nrg1fl/flmice as control. RNA was extracted using the PureLinkTM RNA Mini kit (Ambion) RNA libraries were constructed using the Illumina TruSeq Stranded mRNA kit

characteristic: description

text: embryonic day 13.5

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: mix background


characteristic: ENA-CHECKLIST

characteristic: External Id

text: iBV - Institute of Biology Valrose CNRS UMR7277, Inserm U1091, UNS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: embryonic day 13.5

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: mix background

characteristic: strain

characteristic: title


E-MTAB-5759:OsMPH1E-22 #1

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5759:OsMPH1E-22 #1

tag: Namespace:Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

text: Japanese rice

text: Kita-ake

characteristic: cultivar

text: Protocols: The WT plants and the OsMPH1V and OsMPH1E transgenic lines were cultivated under continuous light at 28°C for 4 weeks in plant growth chambers. Total RNA was extracted using the Trizol reagent (Invitrogen) The sequencing library was constructed following the manufacturer’s instructions (Illumina Inc.).

text: seedling, four leaves stage

text: OsMPH1 fused with the repression module 4EAR

text: continuous light at 28C

characteristic: growth condition

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: leaf and shoot

text: Oryza sativa Japonica Group

text: OsMPH1E-22 #1


E-MTAB-5759:OsMPH1E-22 #2

characteristic: ENA-LAST-UPDATE

text: Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China

text: public

text: E-MTAB-5759:OsMPH1E-22 #2

text: ArrayExpress

characteristic: broker name

text: Japanese rice

characteristic: common name

text: Kita-ake

characteristic: description

text: seedling, four leaves stage

characteristic: developmental stage

characteristic: genotype

text: continuous light at 28C

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: leaf and shoot

text: Oryza sativa Japonica Group

text: OsMPH1E-22 #2


E-MTAB-5759:OsMPH1E-22 #3

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5759:OsMPH1E-22 #3

text: ArrayExpress

text: Japanese rice

text: Kita-ake

text: seedling, four leaves stage

text: continuous light at 28C

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: leaf and shoot

characteristic: organism part

text: Oryza sativa Japonica Group

text: OsMPH1E-22 #3


E-MTAB-5759:OsMPH1V-3 #1

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5759:OsMPH1V-3 #1

characteristic: Submitter Id

text: ArrayExpress

text: Japanese rice

text: Kita-ake

text: seedling, four leaves stage

text: OsMPH1 fused with the transcription activation module 4VP16

text: continuous light at 28C

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: leaf and shoot

text: Oryza sativa Japonica Group

text: OsMPH1V-3 #1

characteristic: title


E-MTAB-5759:OsMPH1V-3 #2

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5759:OsMPH1V-3 #2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Kita-ake

characteristic: cultivar

text: seedling, four leaves stage

text: continuous light at 28C

characteristic: growth condition

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: leaf and shoot

text: Oryza sativa Japonica Group

text: OsMPH1V-3 #2


E-MTAB-5759:OsMPH1V-3 #3

text: public

text: E-MTAB-5759:OsMPH1V-3 #3

text: ArrayExpress

text: Japanese rice

characteristic: common name

text: Kita-ake

characteristic: description

text: seedling, four leaves stage

characteristic: developmental stage

characteristic: genotype

text: continuous light at 28C

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: leaf and shoot

text: Oryza sativa Japonica Group

text: OsMPH1V-3 #3


E-MTAB-5759:WT #1

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5759:WT #1

text: ArrayExpress

text: Japanese rice

text: Kita-ake

text: seedling, four leaves stage

text: wild type genotype

text: continuous light at 28C

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: leaf and shoot

text: Oryza sativa Japonica Group

text: WT #1


E-MTAB-5759:WT #2

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5759:WT #2

characteristic: Submitter Id

text: ArrayExpress

text: Japanese rice

text: Kita-ake

text: seedling, four leaves stage

text: wild type genotype

text: continuous light at 28C

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: leaf and shoot

characteristic: organism part

text: Oryza sativa Japonica Group

text: WT #2


E-MTAB-5759:WT #3

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5759:WT #3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Kita-ake

characteristic: cultivar

text: seedling, four leaves stage

text: wild type genotype

text: continuous light at 28C

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: leaf and shoot

text: Oryza sativa Japonica Group

text: WT #3

characteristic: title


text: TGAC

text: public

text: TGAC

unit: year

characteristic: date

text: country

characteristic: location

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

characteristic: source name


characteristic: ENA-CHECKLIST

characteristic: External Id

text: TGAC

text: public

text: TGAC

text: United Kingdom

characteristic: country

text: Hymenoscyphus fraxineus

characteristic: organism

text: Hymenoscyphus fraxineus


characteristic: ENA-FIRST-PUBLIC

text: TGAC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: TGAC

text: Hymenoscyphus fraxineus

text: country

characteristic: region

text: Hymenoscyphus fraxineus


characteristic: ENA-LAST-UPDATE

text: TGAC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TGAC

text: country

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus


text: URMITE

text: public

text: Lachnospiraceae bacterium Marseille-P3773

characteristic: strain

text: Batmaniella cagae genome

characteristic: title


text: public

tag: Namespace:WAGENINGEN UNIVERSITY, LABORATORY OF SYSTEMS AND SYNTHETIC BIOLOGY.

text: Akkermansia muciniphila

characteristic: common name

characteristic: description

text: Akkermansia muciniphila

text: Akkermansia muciniphila


characteristic: ENA-CHECKLIST

text: WAGENINGEN UNIVERSITY, LABORATORY OF SYSTEMS AND SYNTHETIC BIOLOGY.

text: public

text: Akkermansia muciniphila

text: Akkermansia muciniphila

text: Akkermansia muciniphila


Elephant.fasta

characteristic: External Id

text: public

text: Elephant.fasta

text: Akkermansia muciniphila

text: Elephant.fasta

text: Akkermansia muciniphila

text: Akkermansia muciniphila

text: Elephant.fasta


Horse.fasta

text: public

text: Horse.fasta

text: Akkermansia muciniphila

text: Horse.fasta

text: Akkermansia muciniphila

text: Akkermansia muciniphila

text: Horse.fasta


Pig.fasta

text: public

text: Pig.fasta

text: Akkermansia muciniphila

text: Pig.fasta

text: Akkermansia muciniphila

text: Akkermansia muciniphila

text: Pig.fasta


Reindeer.fasta

text: public

text: Reindeer.fasta

text: Akkermansia muciniphila

text: Reindeer.fasta

text: Akkermansia muciniphila

text: Akkermansia muciniphila

text: Reindeer.fasta


Siamang.fasta

text: public

text: Siamang.fasta

text: Akkermansia muciniphila

text: Siamang.fasta

text: Akkermansia muciniphila

text: Akkermansia muciniphila

text: Siamang.fasta


text: TEAGASC

text: public

text: pig metagenome

text: pig metagenome

text: porcine microbiota


text: WSL BIRMENSDORF

text: public

tag: Namespace:WSL BIRMENSDORF

characteristic: collection date

text: Field soil, Transect: high contamination

text: Meadow

characteristic: environment (biome)

text: Meadow soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Hg Valais soil

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Bacteria


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WSL BIRMENSDORF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Field soil, Transect: moderate contamination

text: Meadow

text: Meadow soil

text: Soil

text: Switzerland

text: metagenome

text: soil metagenome

characteristic: organism

text: Hg Valais soil

text: soil metagenome

text: Illumina MiSeq

text: soil

text: Bacteria

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: WSL BIRMENSDORF

text: public

characteristic: collection date

text: Field soil, Transect: low contamination

characteristic: description

text: Meadow

characteristic: environment (biome)

text: Meadow soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: Hg Valais soil

text: soil metagenome

text: Illumina MiSeq

text: soil

text: Bacteria


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WSL BIRMENSDORF

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Forest soil, Transect: natural uncontaminated

text: Forest

text: Forest soil

text: Soil

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Hg Valais soil

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Bacteria


characteristic: ENA-CHECKLIST

characteristic: External Id

text: WSL BIRMENSDORF

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Meadow

text: Meadow soil

text: Soil

text: Switzerland

text: metagenome

text: soil metagenome

characteristic: organism

text: Hg Valais soil

text: soil metagenome

text: Illumina MiSeq

text: soil

text: Fungi

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WSL BIRMENSDORF

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Meadow

characteristic: environment (biome)

text: Meadow soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: Hg Valais soil

text: soil metagenome

text: Illumina MiSeq

text: soil

text: Fungi


characteristic: ENA-CHECKLIST

characteristic: External Id

text: WSL BIRMENSDORF

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Field soil, Transect: low contamination

text: Meadow

text: Meadow soil

text: Soil

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Hg Valais soil

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Fungi


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WSL BIRMENSDORF

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Forest

text: Forest soil

text: Soil

text: Switzerland

text: metagenome

text: soil metagenome

characteristic: organism

text: Hg Valais soil

text: soil metagenome

text: Illumina MiSeq

text: soil

text: Fungi

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CLM

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: microbiome

characteristic: environment (biome)

text: metagenome

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: South Korea

characteristic: geographic location (country and/or sea)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: metagenome

text: microbiome

text: metagenome

text: pyrosequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

text: public

text: Sample 1

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Sample 2

characteristic: description

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LSA-DISTAL-UNIBO

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sample 3

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun


characteristic: ENA-CHECKLIST

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

text: public

text: Sample 5

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Sample 6

characteristic: description

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LSA-DISTAL-UNIBO

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sample 55

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun


characteristic: ENA-CHECKLIST

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

text: public

text: Sample 56

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Sample 57

characteristic: description

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LSA-DISTAL-UNIBO

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sample 58

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun


characteristic: ENA-CHECKLIST

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

text: public

text: Sample 59

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Sample 60

characteristic: description

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


Cold_sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IVIA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Cold_sample 1

text: Citrus sinensis x Citrus trifoliata

text: Citrus sinensis x Citrus trifoliata


Cold_sample 5

characteristic: ENA-CHECKLIST

text: IVIA

characteristic: INSDC center name

text: public

text: Cold_sample 5

text: Citrus sinensis x Citrus trifoliata

text: Citrus sinensis x Citrus trifoliata


Cold_sample 6

text: IVIA

text: public

text: Cold_sample 6

text: Citrus sinensis x Citrus trifoliata

text: Citrus sinensis x Citrus trifoliata


Cold_sample 7

text: IVIA

text: public

text: Cold_sample 7

text: Citrus macrophylla

text: Citrus macrophylla


Cold_sample 8

text: IVIA

text: public

text: Cold_sample 8

text: Citrus macrophylla

text: Citrus macrophylla


Cold_sample 10

text: IVIA

text: public

text: Cold_sample 10

text: Citrus sinensis x Citrus trifoliata

text: Citrus sinensis x Citrus trifoliata


Cold_sample 11

text: IVIA

text: public

text: Cold_sample 11

text: Citrus macrophylla

text: Citrus macrophylla


text: Salmonella enterica

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Salmonella enterica

characteristic: common name

text: Salmonella enterica

text: Salmonella enterica

characteristic: subject id


text: Salmonella enterica

text: MA.158 KAK-11

characteristic: External Id

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARB14 (Steffen Porwollik)

text: SC

characteristic: INSDC first public

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARB61 (Fidelma Boyd)

text: SC

text: public

characteristic: SRA accession

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARA33 (Fidelma Boyd)

text: SC

text: public

characteristic: Submitter Id

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARB69 (Fidelma Boyd)

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.05ba 2391

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARB50 (Mia Torpdahl)

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARB53 (Mia Torpdahl)

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: HANYANG UNIVERSITY

text: public

tag: Namespace:HANYANG UNIVERSITY

text: metagenome

text: human bile metagenome

text: human bile metagenome


text: public

tag: Namespace:Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria

characteristic: collection date

text: common olive

text: Italy

characteristic: geographic location (country and/or sea)

text: 39° 37' 00''

characteristic: geographic location (latitude)

text: 16° 45' 53''

characteristic: geographic location (longitude)

text: Olive trees were spaced with a regular planting pattern of 4x6 m in ~10 ha

characteristic: isolation and growth condition

text: Olea europaea

text: young leaves

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaves

characteristic: plant structure

text: Olea europaea

text: GBS on 94 olive cultivars representative of the Italian germplasm


text: Homo sapiens

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: Host Insect

characteristic: environment (material)

text: India

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: BF

characteristic: project name

text: insect gut metagenome

text: illumina

characteristic: sequencing method

text: Insect whole body metagenome


text: Danio rerio

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: Danio rerio

characteristic: subject id


Avir_pH 7.6_ind1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UIT

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Avir_pH 7.6_ind1

text: 13th May 2013

characteristic: collection date

text: Transcriptome reads obtained from an individual 1 collected at pH 7.6 in Levante Bay near Vulcano Island, Italy

characteristic: description

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

text: Anemonia viridis

characteristic: organism

text: Anemonia viridis

text: Adult of Anemonia viridis

characteristic: title


Avir_pH 7.6_ind2

text: UIT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Avir_pH 7.6_ind2

text: 14th May 2013

text: Transcriptome reads obtained from an individual 2 collected at pH 7.6 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 7.6_ind3

characteristic: ENA-CHECKLIST

text: UIT

text: public

text: Avir_pH 7.6_ind3

text: 13th May 2013

text: Transcriptome reads obtained from an individual 3 collected at pH 7.6 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 7.6_ind4

characteristic: ENA-FIRST-PUBLIC

text: UIT

text: public

text: Avir_pH 7.6_ind4

text: 14th May 2013

text: Transcriptome reads obtained from an individual 4 collected at pH 7.6 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 7.9_ind1

text: UIT

text: public

text: Avir_pH 7.9_ind1

characteristic: Submitter Id

text: 13th May 2013

text: Transcriptome reads obtained from an individual 1 collected at pH 7.9 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 7.9_ind2

text: UIT

text: public

text: Avir_pH 7.9_ind2

text: 14th May 2013

text: Transcriptome reads obtained from an individual 2 collected at pH 7.9 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 7.9_ind3

text: UIT

text: public

text: Avir_pH 7.9_ind3

text: 13th May 2013

text: Transcriptome reads obtained from an individual 3 collected at pH 7.9 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 7.9_ind4

text: UIT

text: public

text: Avir_pH 7.9_ind4

text: 14th May 2013

text: Transcriptome reads obtained from an individual 4 collected at pH 7.9 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 8.2_ind1

text: UIT

text: public

text: Avir_pH 8.2_ind1

text: 13th May 2013

text: Transcriptome reads obtained from an individual 1 collected at pH 8.2 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 8.2_ind2

text: UIT

text: public

text: Avir_pH 8.2_ind2

text: 14th May 2013

text: Transcriptome reads obtained from an individual 2 collected at pH 8.2 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 8.2_ind3

text: UIT

text: public

text: Avir_pH 8.2_ind3

text: 13th May 2013

text: Transcriptome reads obtained from an individual 3 collected at pH 8.2 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


Avir_pH 8.2_ind4

text: UIT

text: public

text: Avir_pH 8.2_ind4

text: 14th May 2013

text: Transcriptome reads obtained from an individual 4 collected at pH 8.2 in Levante Bay near Vulcano Island, Italy

text: Mediterranean Sea

text: Anemonia viridis

text: Anemonia viridis

text: Adult of Anemonia viridis


text: UNIVERSITY OF NEW HAMPSHIRE

text: public

tag: Namespace:UNIVERSITY OF NEW HAMPSHIRE

text: rock pigeon

characteristic: common name

text: stressed

text: adult

characteristic: dev stage

text: Columba livia

text: Columba livia

text: female

characteristic: sex

text: hypothalamus

characteristic: tissue type

text: Rock Dove Stress


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NEW HAMPSHIRE

characteristic: INSDC last update

text: public

text: rock pigeon

text: stressed

text: adult

text: Columba livia

text: Columba livia

text: female

text: ovary

text: Rock Dove Stress


text: UNIVERSITY OF NEW HAMPSHIRE

text: public

characteristic: INSDC status

text: rock pigeon

text: stressed

characteristic: description

text: adult

text: Columba livia

text: Columba livia

text: female

text: pituitary

text: Rock Dove Stress


text: UNIVERSITY OF NEW HAMPSHIRE

text: public

text: rock pigeon

text: stressed

text: adult

text: Columba livia

characteristic: organism

text: Columba livia

text: male

text: hypothalamus

text: Rock Dove Stress


text: UNIVERSITY OF NEW HAMPSHIRE

text: public

text: rock pigeon

text: stressed

text: adult

text: Columba livia

text: Columba livia

text: male

text: pituitary

text: Rock Dove Stress

characteristic: title


text: UNIVERSITY OF NEW HAMPSHIRE

characteristic: INSDC center name

text: public

text: rock pigeon

text: stressed

text: adult

text: Columba livia

text: Columba livia

text: male

text: testes

text: Rock Dove Stress


text: UNIBE-IG

characteristic: INSDC first public

text: public

text: dog

text: Spitz (Grossspitz) - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Spitz (Grossspitz)


text: University hospitals Leuven

text: public

characteristic: SRA accession

tag: Namespace:University hospitals Leuven

characteristic: collection date

text: bla OXA-427 harbouring plasmid of Klebsiella pneumoniae strain KLPN57

text: Belgium

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urine sample

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae KLPN57

characteristic: strain

text: Klebsiella pneumoniae KLPN57 strain plasmid pKLPN57_01


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University hospitals Leuven

text: public

characteristic: Submitter Id

text: blaOXA-427 harbouring plasmid of Enterobacter cloacae strain ENCL58

text: Belgium

text: diseased

text: homo sapiens

text: Enterobacter cloacae ENCL58

text: wound sample

text: Enterobacter cloacae

text: Enterobacter cloacae

text: Enterobacter cloacae ENCL58 strain plasmid pENCL58_01


Sample 17

characteristic: External Id

text: MICALIS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sample 17

text: Metagenomic analysis of ivorian sweet wort (tchapalo processing)

characteristic: description

text: food fermentation metagenome

text: food fermentation metagenome


text: OX

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: broker name

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


text: OX

text: public

characteristic: SRA accession

text: Neisseria polysaccharea

text: Neisseria polysaccharea


text: public

tag: Namespace:Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Sample preparation Human tissue samples used for protein and mRNA expression analyses were collected and handled in accordance with Swedish laws and regulation and obtained from the Department of Pathology, Uppsala University Hospital, Uppsala, Sweden as part of the sample collection governed by the Uppsala Biobank (http://www.uppsalabiobank.uu.se/en/). All human tissue samples used in the present study were anonymized in accordance with approval and advisory report from the Uppsala Ethical Review Board (Reference # 2002 - 577, 2005 - 338 and 2007 - 159 (protein) and # 2011 - 473 (RNA)) Tissue samples were embedded in Optimal Cutting Temperature (O.C.T.) compound and stored at - 80°C. A n HE stained frozen section (4 μm) was prepared from each sample using a cryostat and the CryoJane® Tape - Transfer System (Instrumedics, St. Louis, MO, USA). Each slide was S 2 examined by a pathologist to ensure sampling of representative normal tissue. Three sections (10 μm) were cut from each frozen tissue block and collected into a tube for subsequent RNA extraction. The tissue was homogenized mechanically using a 3 mm steel grinding ball (VWR). Total RNA was extracted from cell lines and tissue samples using the RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manuf acturer’s instructions. The extracted RNA samples were analyzed using either an Experion automated electrophoresis system (Bio - Rad Laboratories, Hercules, CA, USA) with the standard - sensitivity RNA chip or an Agilent 2100 Bioanalyzer system (Agilent Biotec hnologies, Palo Alto, USA) with the RNA 6000 Nano Labchip Kit. Only samples of high - quality RNA (RNA Integrity Number ≥7.5) were used in the following mRNA sample preparation for sequencing. Strand-specific RNA-seq (Illumina TruSeq Stranded mRNA HT kit with polyA-selection)

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.

text: public

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: testis

text: Homo sapiens


text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: tonsil

text: Homo sapiens


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: LSA-DISTAL-UNIBO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Sample 7

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Sample 8

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Sample 9

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun


characteristic: ENA-CHECKLIST

text: LSA-DISTAL-UNIBO

text: public

text: Sample 10

text: chicken

text: feces

text: feces

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Sample 11

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Sample 12

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun