characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver sample 15/44042 from individual 15/44042. This sample is a unique specimen from this individual.

text: Mus musculus

text: Mus musculus

text: male

text: BL6 (CTCF;AlbCre HE;HE)

text: liver

characteristic: tissue type

characteristic: title

text: not treated


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 91215_N8 from individual 91215. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN

characteristic: treatment agent

characteristic: treatment date

unit: ug/g body weight

characteristic: treatment dose


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 90798_N1 from individual 90798. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN


90211 N5

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 90211 N5

text: southeastern Asian house mouse

characteristic: date of birth

characteristic: date of death

text: liver sample 90211 N5 from individual 90211. This sample is a unique specimen from this individual.

characteristic: description

characteristic: individual name

text: Mus musculus castaneus

text: 90211 N5

text: Mus musculus castaneus

text: male

text: CAST/EiJ

text: liver

text: DEN


characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

text: ear or tail sample 100869_T from individual 100869. This sample is a unique specimen from this individual.

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: ear or tail

text: not treated

characteristic: treatment agent


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver sample 15/27262 from individual 15/27262. This sample is a unique specimen from this individual.

text: Mus musculus

text: Mus musculus

text: male

text: BL6 (CTCF;AlbCre HE;WT)

text: liver

text: not treated


90814 N1

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 90814 N1

text: southeastern Asian house mouse

text: liver sample 90814 N1 from individual 90814. This sample is a unique specimen from this individual.

text: Mus musculus castaneus

text: 90814 N1

text: Mus musculus castaneus

text: male

text: CAST/EiJ

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 93259_N2 from individual 93259. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: DEN


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 92105_N6 from individual 92105. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

text: DEN

characteristic: treatment agent


14/34745 N1

characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 14/34745 N1

text: house mouse

text: liver sample 14/34745 N1 from individual 14/34745. This sample is a unique specimen from this individual.

text: Mus musculus

text: 14/34745 N1

text: Mus musculus

text: male

text: BL6 (CTCF;PgkCre HE;HE)

text: liver

characteristic: tissue type

characteristic: title

text: not treated


text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 93129_N3 from individual 93129. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 93131_N3 from individual 93131. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN


characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 90888_N4 from individual 90888. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent


91432 N2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: 91432 N2

text: southeastern Asian house mouse

text: liver sample 91432 N2 from individual 91432. This sample is a unique specimen from this individual.

characteristic: description

characteristic: individual name

text: Mus musculus castaneus

characteristic: organism

text: 91432 N2

characteristic: sample name

text: Mus musculus castaneus

text: male

text: CAST/EiJ

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 93244_N3 from individual 93244. This sample is a unique specimen from this individual.

text: dysplastic nodule

characteristic: diagnosis

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN


characteristic: ENA-FIRST-PUBLIC

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 90446_N3 from individual 90446. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

text: liver dysplastic nodule 93132_N2 from individual 93132. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-FIRST-PUBLIC

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: tail sample 14/34747 from individual 14/34747. This sample is a unique specimen from this individual.

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: tail

text: not treated


91100 N3

characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 91100 N3

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver sample 91100 N3 from individual 91100. This sample is a unique specimen from this individual.

text: Mus musculus

text: 91100 N3

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent


91929 N2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: 91929 N2

text: southeastern Asian house mouse

text: liver sample 91929 N2 from individual 91929. This sample is a unique specimen from this individual.

characteristic: description

characteristic: individual name

text: Mus musculus castaneus

characteristic: organism

text: 91929 N2

characteristic: sample name

text: Mus musculus castaneus

text: male

text: CAST/EiJ

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-FIRST-PUBLIC

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 91612_N2 from individual 91612. This sample is a unique specimen from this individual.

text: dysplastic nodule

characteristic: diagnosis

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN


90526 N2

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 90526 N2

text: southeastern Asian house mouse

characteristic: date of birth

characteristic: date of death

text: liver sample 90526 N2 from individual 90526. This sample is a unique specimen from this individual.

text: Mus musculus castaneus

text: 90526 N2

text: Mus musculus castaneus

text: male

text: CAST/EiJ

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent


15/44139 N9

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

text: 15/44139 N9

text: house mouse

text: liver sample 15/44139 N9 from individual 15/44139. This sample is a unique specimen from this individual.

characteristic: description

characteristic: individual name

text: Mus musculus

characteristic: organism

text: 15/44139 N9

characteristic: sample name

text: Mus musculus

text: male

text: BL6 (CTCF;AlbCre HE;HE)

text: liver

text: not treated


text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 91839_N1 from individual 91839. This sample is a unique specimen from this individual.

text: dysplastic nodule

characteristic: diagnosis

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 91838_N4 from individual 91838. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: house mouse

text: liver dysplastic nodule 90803_N7 from individual 90803. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

text: liver

text: DEN


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 94314_N3 from individual 94314. This sample is a unique specimen from this individual.

text: dysplastic nodule

characteristic: diagnosis

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 91944_N3 from individual 91944. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: house mouse

text: liver dysplastic nodule 90170_N2 from individual 90170. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

text: liver

text: DEN


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 90885_N2 from individual 90885. This sample is a unique specimen from this individual.

text: dysplastic nodule

characteristic: diagnosis

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


91416 N1

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 91416 N1

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver sample 91416 N1 from individual 91416. This sample is a unique specimen from this individual.

text: Mus musculus

text: 91416 N1

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: house mouse

text: liver dysplastic nodule 92057_N4 from individual 92057. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

text: liver

text: DEN


91520 N2

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: 91520 N2

characteristic: Submitter Id

text: southeastern Asian house mouse

characteristic: common name

text: liver sample 91520 N2 from individual 91520. This sample is a unique specimen from this individual.

text: Mus musculus castaneus

text: 91520 N2

text: Mus musculus castaneus

text: male

characteristic: sex

text: CAST/EiJ

characteristic: strain

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


15/44139 N8

characteristic: ENA-FIRST-PUBLIC

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 15/44139 N8

text: house mouse

text: liver sample 15/44139 N8 from individual 15/44139. This sample is a unique specimen from this individual.

text: Mus musculus

text: 15/44139 N8

text: Mus musculus

text: male

text: BL6 (CTCF;AlbCre HE;HE)

text: liver

characteristic: tissue type

characteristic: title

text: not treated

characteristic: treatment agent


93258 N4

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: 93258 N4

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver sample 93258 N4 from individual 93258. This sample is a unique specimen from this individual.

characteristic: description

characteristic: individual name

text: Mus musculus

text: 93258 N4

text: Mus musculus

text: male

text: liver

text: DEN


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 91217_N1 from individual 91217. This sample is a unique specimen from this individual.

text: dysplastic nodule

characteristic: diagnosis

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: liver dysplastic nodule 90810_N2 from individual 90810. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 93131_N5 from individual 93131. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: individual name

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: DEN


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver sample 15/44198 from individual 15/44198. This sample is a unique specimen from this individual.

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: BL6 (CTCF;AlbCre HE;HE)

characteristic: strain

text: liver

text: not treated


89487 N1

characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 89487 N1

text: southeastern Asian house mouse

text: liver sample 89487 N1 from individual 89487. This sample is a unique specimen from this individual.

text: Mus musculus castaneus

text: 89487 N1

text: Mus musculus castaneus

text: male

text: CAST/EiJ

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 90400_N4 from individual 90400. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: DEN


93091 N3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: 93091 N3

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver sample 93091 N3 from individual 93091. This sample is a unique specimen from this individual.

text: Mus musculus

characteristic: organism

text: 93091 N3

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN


characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: liver dysplastic nodule 90446_N2 from individual 90446. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose


91867 N2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: 91867 N2

text: southeastern Asian house mouse

characteristic: date of birth

characteristic: date of death

text: liver sample 91867 N2 from individual 91867. This sample is a unique specimen from this individual.

characteristic: description

characteristic: individual name

text: Mus musculus castaneus

text: 91867 N2

text: Mus musculus castaneus

text: male

text: CAST/EiJ

text: liver

text: DEN


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 90446_N1 from individual 90446. This sample is a unique specimen from this individual.

text: dysplastic nodule

characteristic: diagnosis

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: liver

text: DEN


characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: liver dysplastic nodule 90810_N5 from individual 90810. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

characteristic: tissue type

characteristic: title

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 90803_N4 from individual 90803. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: individual name

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: DEN


15/33905 N4

characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

text: 15/33905 N4

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver sample 15/33905 N4 from individual 15/33905. This sample is a unique specimen from this individual.

text: Mus musculus

characteristic: organism

text: 15/33905 N4

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: BL6 (CTCF;AlbCre HE;WT)

characteristic: strain

text: liver

text: not treated


characteristic: ENA-FIRST-PUBLIC

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: ear or tail sample 100866_T from individual 100866. This sample is a unique specimen from this individual.

text: Mus musculus

text: Mus musculus

text: male

text: ear or tail

characteristic: tissue type

characteristic: title

text: not treated

characteristic: treatment agent


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 90447_N3 from individual 90447. This sample is a unique specimen from this individual.

text: dysplastic nodule

characteristic: diagnosis

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver sample 15/41618 from individual 15/41618. This sample is a unique specimen from this individual.

characteristic: description

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: BL6 (CTCF;AlbCre HE;HE)

text: liver

text: not treated


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:LEIBNIZ INSTITUTE FOR AGE RESEARCH - FRITZ LIPMANN

text: Greater cane rat

text: These samples were used to create a transcript catalog of Thryonomys swinderianus.

text: adult

characteristic: dev stage

text: Thryonomys swinderianus

text: Thryonomys swinderianus

text: Male

text: Liver

characteristic: tissue type

text: Thryonomys swinderianus transcriptome assembly samples

characteristic: title


characteristic: ENA-CHECKLIST

text: LEIBNIZ INSTITUTE FOR AGE RESEARCH - FRITZ LIPMANN

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Greater cane rat

text: adult

text: Thryonomys swinderianus

text: Thryonomys swinderianus

text: Male

text: Liver


characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: silvery mole-rat

characteristic: common name

text: These samples were used to create a transcript catalog of Heliophobius argenteocinereus.

text: adult

text: Heliophobius argenteocinereus

text: Heliophobius argenteocinereus

text: Female

text: Liver

text: Heliophobius argenteocinereus transcriptome assembly samples


Flat Centered-210-Organic

text: Ecology Department

text: public

text: Flat Centered-210-Organic

tag: Namespace:Ecology Department

characteristic: collection date

text: Flat Centered-210-Organic

characteristic: description

text: Arctic tundra

characteristic: environment (biome)

text: Polygonal ground

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: NGEE Arctic Polygons

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: NGEE Arctic Ploygons


Flat Centered-210-Mineral

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ecology Department

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Flat Centered-210-Mineral

characteristic: Submitter Id

text: Flat Centered-210-Mineral

text: Arctic tundra

text: Polygonal ground

text: soil

text: USA

text: metagenome

text: soil metagenome

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Ploygons

characteristic: title


Flat Centered-214-Organic

text: Ecology Department

text: public

text: Flat Centered-214-Organic

characteristic: collection date

text: Flat Centered-214-Organic

characteristic: description

text: Arctic tundra

characteristic: environment (biome)

text: Polygonal ground

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Ploygons


Flat Centered-214-Mineral

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ecology Department

characteristic: INSDC center name

text: public

text: Flat Centered-214-Mineral

text: Flat Centered-214-Mineral

text: Arctic tundra

text: Polygonal ground

text: soil

text: USA

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: NGEE Arctic Polygons

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: NGEE Arctic Ploygons


Low Centered-405-Organic

text: Ecology Department

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Low Centered-405-Organic

characteristic: Submitter Id

characteristic: collection date

text: Low Centered-405-Organic

characteristic: description

text: Arctic tundra

characteristic: environment (biome)

text: Polygonal ground

characteristic: environment (feature)

text: soil

text: USA

text: metagenome

text: soil metagenome

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Ploygons

characteristic: title


Low Centered-405-Mineral

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ecology Department

text: public

text: Low Centered-405-Mineral

text: Low Centered-405-Mineral

text: Arctic tundra

text: Polygonal ground

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Ploygons


Low Centered-408.5-Organic

text: Ecology Department

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Low Centered-408.5-Organic

text: Low Centered-408.5-Organic

text: Arctic tundra

text: Polygonal ground

text: soil

text: USA

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: NGEE Arctic Polygons

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: NGEE Arctic Ploygons


Low Centered-408.5-Mineral

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ecology Department

text: public

text: Low Centered-408.5-Mineral

characteristic: Submitter Id

characteristic: collection date

text: Low Centered-408.5-Mineral

characteristic: description

text: Arctic tundra

characteristic: environment (biome)

text: Polygonal ground

characteristic: environment (feature)

text: soil

text: USA

text: metagenome

text: soil metagenome

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Ploygons

characteristic: title


Low Centered-411-Organic

text: Ecology Department

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Low Centered-411-Organic

text: Low Centered-411-Organic

text: Arctic tundra

text: Polygonal ground

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Ploygons


Cold_Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IVIA

text: public

characteristic: SRA accession

text: Cold_Sample 2

text: Citrus sinensis x Citrus trifoliata

characteristic: organism

text: Citrus sinensis x Citrus trifoliata


Cold_Sample 3

text: IVIA

text: public

text: Cold_Sample 3

characteristic: Submitter Id

text: Citrus sinensis x Citrus trifoliata

text: Citrus sinensis x Citrus trifoliata

characteristic: title


Cold_Sample 4

text: IVIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Cold_Sample 4

text: Citrus macrophylla

text: Citrus macrophylla


Cold_Sample 12

text: IVIA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Cold_Sample 12

text: Citrus macrophylla

text: Citrus macrophylla


text: public

tag: Namespace:WAGENINGEN UNIVERSITY, LABORATORY OF SYSTEMS AND SYNTHETIC BIOLOGY.

text: The A. niger N402 derivative NW305 (cspA1,ΔargB,goxC17) was grown without iron added to the medium.

characteristic: description

text: Aspergillus niger

text: Aspergillus niger

text: NW305 grown without iron - 1


text: WAGENINGEN UNIVERSITY, LABORATORY OF SYSTEMS AND SYNTHETIC BIOLOGY.

text: public

text: Aspergillus niger

text: Aspergillus niger

text: NW305 grown without iron - 2


text: public

text: The A. niger N402 derivative NW305 (cspA1,ΔargB,goxC17) was grown with 10 g/L Fe(II)SO4 added to the medium.

text: Aspergillus niger

text: Aspergillus niger

text: NW305 grown with excess iron - 1


text: public

text: Aspergillus niger

text: Aspergillus niger

text: NW305 grown with excess iron - 2


text: public

text: The A. niger N402 derivative NW186 (cspA1,ΔargB,goxC17,prtF28) was grown without iron added to the medium.

text: Aspergillus niger

text: Aspergillus niger

text: NW186 grown without iron - 1


text: public

text: Aspergillus niger

text: Aspergillus niger

text: NW186 grown without iron - 2


text: INRA JOUY-EN-JOSAS

text: public

tag: Namespace:INRA JOUY-EN-JOSAS

text: cattle

characteristic: common name

text: Bos taurus

text: Bos taurus


text: 30687793; 32375989

text: OX

text: public

text: GBR

characteristic: broker name

text: Neisseria

characteristic: genus

characteristic: isolate

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis

type: AMR curated data - CABBAGE

value: cefotaxime

value: susceptible

value: Neisseria meningitidis

value: penicillin

value: ciprofloxacin

value: resistant

value: rifampin

value: chloramphenicol


text: 30687793; 32375989

characteristic: ENA-CHECKLIST

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

characteristic: ENA-FIRST-PUBLIC

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

characteristic: ENA-LAST-UPDATE

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

characteristic: External Id

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

characteristic: SRA accession

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

characteristic: Submitter Id

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis

characteristic: title


text: 30687793; 32375989

text: OX

characteristic: INSDC center name

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

characteristic: INSDC first public

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

characteristic: INSDC last update

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

characteristic: INSDC status

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

characteristic: description

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: joint fluid

text: musculoskeletal system

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: CSF

text: central nervous system

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: joint fluid

text: musculoskeletal system

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: OX

text: public

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: joint fluid

text: musculoskeletal system

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 30687793; 32375989

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: Lausanne University Hospital

text: public

tag: Namespace:Lausanne University Hospital

text: Klebsiella pneumoniae KpGe strain, laboratory strain used to feed Dictyostelium discoideum and to study cellular mechanisms allowing bacterial uptake and killing.

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: non-pathogenic KpGe strain of Klebsiella pneumoniae


text: public

characteristic: collection date

text: wast sludge

characteristic: environment (biome)

text: chemical enhanced primary treatment sludge

characteristic: environment (feature)

text: waste sludge

characteristic: environment (material)

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: Clostridium beijerinckii NCIMB 8052

text: metatranscriptome of CEPT sludge digestion

characteristic: project name

text: Clostridium beijerinckii NCIMB 8052

text: Illumina

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: waste sludge

text: Chemical Enhanced Primary Treatment sludge

text: waste sludge

text: Hong Kong

text: metagenome

text: Clostridium beijerinckii NCIMB 8052

characteristic: organism

text: metagenome of CEPT sludge

text: Clostridium beijerinckii NCIMB 8052

text: Illumina

text: metagenome of CEPT sludge

characteristic: title

text: wastewater/sludge


Gracilaria changii1

text: UNIVERSITI PUTRA MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gracilaria changii1

tag: Namespace:UNIVERSITI PUTRA MALAYSIA

text: Genome sequencing of Gracilaria changii by NGS

characteristic: description

text: Gracilaria changii

text: Gracilaria changii

text: Genome sequencing of Gracilaria changii


text: male

characteristic: ArrayExpress-Sex

text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: KOLF2_C1 gDNA

characteristic: sample description

text: Homo sapiens


text: male

text: Homo sapien

characteristic: ENA-CHECKLIST

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: LSHTM

text: public

text: skin metagenome

text: skin metagenome

text: Impact of the Mk VI SkinSuit on skin microbiota

type: has member


mock

characteristic: ENA-LAST-UPDATE

text: LSHTM

text: public

text: mock

text: skin metagenome

text: skin metagenome


Comm

characteristic: External Id

text: LSHTM

text: public

text: Comm

text: skin metagenome

text: skin metagenome


text: RADBOUD UNIVERSITY

text: public

characteristic: SRA accession

tag: Namespace:RADBOUD UNIVERSITY

characteristic: collection date

text: diagnostic gene analysis

text: Taiga biome

characteristic: environment (biome)

text: sediment

characteristic: environment (feature)

text: Sea sediment, US5B, 0-2.5 cm

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: N-cycle metagenomics in the Bothnian Sea

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Ion Torrent

characteristic: sequencing method

text: N-cycle metagenomics in the Bothnian Ses sediment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RADBOUD UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: diagnostic gene analysis

characteristic: description

text: Taiga biome

text: sediment

text: Sea sediment, US5B, 30-35 cm

text: Baltic Sea

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: sediment

text: Ion Torrent

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RADBOUD UNIVERSITY

text: public

characteristic: SRA accession

characteristic: collection date

text: diagnostic gene analysis

text: Taiga biome

characteristic: environment (biome)

text: sediment

characteristic: environment (feature)

text: Sea sediment, US5B, 5-12.5 cm

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: metagenome

text: metagenome

text: sediment

text: Ion Torrent


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: Plasmodium vivax

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: malaria parasite P. vivax

text: Plasmodium vivax

characteristic: organism

text: Plasmodium vivax

characteristic: title


characteristic: External Id

text: STOCKHOLM UNIVERSITY

text: public

characteristic: SRA accession

tag: Namespace:STOCKHOLM UNIVERSITY

text: gray rockcress

text: Natural population

characteristic: description

text: Greece

text: Arabis alpina

text: Arabis alpina


text: STOCKHOLM UNIVERSITY

text: public

text: gray rockcress

text: Natural population

text: Italy

characteristic: geographic location (country and/or sea)

text: Arabis alpina

text: Arabis alpina


text: STOCKHOLM UNIVERSITY

text: public

text: gray rockcress

text: Natural population

text: France

text: Arabis alpina

text: Arabis alpina


text: STOCKHOLM UNIVERSITY

text: public

text: gray rockcress

text: Natural population

text: Spain

text: Arabis alpina

text: Arabis alpina


text: STOCKHOLM UNIVERSITY

text: public

text: gray rockcress

text: Natural population

text: Sweden

text: Arabis alpina

text: Arabis alpina


text: STOCKHOLM UNIVERSITY

text: public

text: gray rockcress

text: Natural population

text: Iceland

text: Arabis alpina

text: Arabis alpina


text: STOCKHOLM UNIVERSITY

text: public

text: gray rockcress

text: Natural population

text: Poland

text: Arabis alpina

text: Arabis alpina


text: STOCKHOLM UNIVERSITY

text: public

text: gray rockcress

text: Natural population

text: Portugal

text: Arabis alpina

text: Arabis alpina


text: STOCKHOLM UNIVERSITY

text: public

text: gray rockcress

text: Natural population

text: Switzerland

text: Arabis alpina

text: Arabis alpina


text: STOCKHOLM UNIVERSITY

text: public

text: gray rockcress

text: Natural population

text: Germany

text: Arabis alpina

text: Arabis alpina


E-MTAB-5744:Sample 1

text: unspecified

text: public

text: E-MTAB-5744:Sample 1

text: ArrayExpress

characteristic: broker name

text: sheep

text: Protocols: At post-mortem the ileo-caecal lymph node (ICLN) from either diseased sheep with Paratuberculosis or uninfected control sheep were removed. The ICLN was treated with RNAlater RNA Stabilization Solution (Ambion) and stored at -80C prior to RNA extraction (according to manufacturers instructions). TruSeq Small RNA Library Prep Kit was used to prepare libraries.

text: multibacillary paratuberculosis

characteristic: disease

text: Ovis aries

text: Ovis aries

text: lymph node

characteristic: organism part

text: Ovis aries

text: Sample 1


E-MTAB-5744:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: unspecified

characteristic: INSDC center name

text: public

text: E-MTAB-5744:Sample 2

text: ArrayExpress

text: sheep

text: multibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 2


E-MTAB-5744:Sample 3

text: unspecified

characteristic: INSDC first public

text: public

text: E-MTAB-5744:Sample 3

text: ArrayExpress

text: sheep

characteristic: common name

text: multibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 3


E-MTAB-5744:Sample 4

characteristic: ENA-LAST-UPDATE

text: unspecified

characteristic: INSDC last update

text: public

text: E-MTAB-5744:Sample 4

text: ArrayExpress

text: sheep

text: multibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 4


E-MTAB-5744:Sample 5

text: unspecified

text: public

characteristic: INSDC status

text: E-MTAB-5744:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: sheep

text: multibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 5


E-MTAB-5744:Sample 6

text: unspecified

text: public

text: E-MTAB-5744:Sample 6

text: ArrayExpress

text: sheep

text: multibacillary paratuberculosis

text: Ovis aries

characteristic: organism

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 6

characteristic: title


E-MTAB-5744:Sample 13

characteristic: External Id

text: unspecified

text: public

characteristic: SRA accession

text: E-MTAB-5744:Sample 13

text: ArrayExpress

text: sheep

text: normal

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 13


E-MTAB-5744:Sample 14

text: unspecified

text: public

text: E-MTAB-5744:Sample 14

text: ArrayExpress

text: sheep

characteristic: description

text: normal

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 14


E-MTAB-5744:Sample 15

text: unspecified

text: public

text: E-MTAB-5744:Sample 15

text: ArrayExpress

characteristic: broker name

text: sheep

text: normal

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 15


E-MTAB-5744:Sample 16

text: unspecified

text: public

text: E-MTAB-5744:Sample 16

text: ArrayExpress

text: sheep

text: normal

characteristic: disease

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 16


E-MTAB-5744:Sample 17

text: unspecified

text: public

text: E-MTAB-5744:Sample 17

text: ArrayExpress

text: sheep

text: normal

text: Ovis aries

text: Ovis aries

text: lymph node

characteristic: organism part

text: Ovis aries

text: Sample 17


E-MTAB-5744:Sample 18

characteristic: ENA-CHECKLIST

text: unspecified

text: public

text: E-MTAB-5744:Sample 18

text: ArrayExpress

text: sheep

text: normal

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 18


E-MTAB-5744:Sample 10

characteristic: ENA-FIRST-PUBLIC

text: unspecified

text: public

text: E-MTAB-5744:Sample 10

text: ArrayExpress

text: sheep

text: paucibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 10


E-MTAB-5744:Sample 11

text: unspecified

characteristic: INSDC center name

text: public

text: E-MTAB-5744:Sample 11

text: ArrayExpress

text: sheep

text: paucibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 11


E-MTAB-5744:Sample 12

text: unspecified

characteristic: INSDC first public

text: public

text: E-MTAB-5744:Sample 12

text: ArrayExpress

text: sheep

text: paucibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 12


E-MTAB-5744:Sample 7

text: unspecified

text: public

text: E-MTAB-5744:Sample 7

text: ArrayExpress

text: sheep

characteristic: common name

text: paucibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 7


E-MTAB-5744:Sample 8

characteristic: ENA-LAST-UPDATE

text: unspecified

text: public

text: E-MTAB-5744:Sample 8

text: ArrayExpress

text: sheep

text: paucibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 8


E-MTAB-5744:Sample 9

text: unspecified

characteristic: INSDC last update

text: public

text: E-MTAB-5744:Sample 9

text: ArrayExpress

text: sheep

text: paucibacillary paratuberculosis

text: Ovis aries

text: Ovis aries

text: lymph node

text: Ovis aries

text: Sample 9


text: GSC

text: public

characteristic: INSDC status

text: gut metagenome

text: gut metagenome


Setaria italica LP11

text: public

text: Setaria italica LP11

tag: Namespace:CHINESE ACADEMY OF AGRICULTURAL SCIENCES

characteristic: Submitter Id

characteristic: collection date

text: foxtail millet

characteristic: estimated size

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: leaves at heading stage

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: heading stage

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Setaria italica

text: Setaria italica LP1 resequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: unspecified

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Skin lesions and healthy skin tissue samples were collected from patients at the Dermatology department in Princess Alexandra hospital. The study was approved by Metro South Human Research Ethics Committee and The University of Queensland Human Research Ethics Committee (HREC-11-QPAH-236, HREC-11-QPAH-477, HREC-12-QPAH-217, and HREC-12-QPAH-25). Written, informed consent was obtained from all patients prior to participation. Following biopsy, tissues were immersed in RNA later (Life Technologies, Carlsbad, CA) and stored at -80°C until required. All samples were sectioned and processed according to routine protocol in the Department of Anatomical Pathology located in Princess Alexandra Hospital. RNA isolation was performed using the Qiagen RNeasy Plus Mini kit (Qiagen GmbH, Hilden, Germany). Briefly, tissue samples were cut into small pieces, and transferred into 1.5mL tube containing lysing matrix D (MP Biomedicals, Santa Ana, CA, USA) and 600uL buffer RLT containing 1% beta-mercaptoethanol and homogenised using a Fast Prep benchtop homogeniser (MP Biomedicals, Santa Ana, CA, USA). Samples were spun 5 times using setting 6.5 for 30 seconds each, and chilled on ice between spins. Lysate was removed and transferred to a fresh tube. For unfixed BCC samples embedded in OCT, 20 x 10 micron sections were cut and placed into 600 µL buffer RLT, and homogenised using a 18.5 gauge blunt needle attached to an RNAse free syringe and resuspended 5 times. The remaining RNA extraction steps were performed as above. RNA concentration was measured using the Qubit fluorometer (Life Technologies, Carlsbad, CA) and RNA integrity determined using the 2100 Bioanalyser (Agilent Technologies, Palo Alto, CA) on RNA Pico chips. The minimum acceptable quality for RNA for analysis by qPCR was RIN >6. Complementary DNA (cDNA) was synthesised from 200 ng total RNA using the Sensifast cDNA kit (Bioline, London, UK) as per the manufacturer’s instructions. RNA sequencing libraries of poly (A) RNA from 500ng total RNA obtained from AK, IEC and SCC and SK samples, were generated using the TruSeq unstranded mRNA library prep KIT for Illumina multiplexed sequencing (Illumina, San Diego, CA, USA). TruSeq stranded mRNA library prep kit was used to generate poly (A) RNA libraries for RNA obtained from normal health skin samples (Illumina, San Diego, CA, USA). Libraries were sequenced (100 bp, paired-end) on the Illumina 2000 platform and FASTQ files were analysed.

characteristic: description

text: actinic keratosis

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

text: unspecified

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: Borst-Jadassohn intraepidermal carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: unspecified

text: public

text: ArrayExpress

text: human

text: Protocols: Skin lesions and healthy skin tissue samples were collected from patients at the Dermatology department in Princess Alexandra hospital. The study was approved by Metro South Human Research Ethics Committee and The University of Queensland Human Research Ethics Committee (HREC-11-QPAH-236, HREC-11-QPAH-477, HREC-12-QPAH-217, and HREC-12-QPAH-25). Written, informed consent was obtained from all patients prior to participation. Following biopsy, tissues were immersed in RNA later (Life Technologies, Carlsbad, CA) and stored at -80°C until required. All samples were sectioned and processed according to routine protocol in the Department of Anatomical Pathology located in Princess Alexandra Hospital. RNA isolation was performed using the Qiagen RNeasy Plus Mini kit (Qiagen GmbH, Hilden, Germany). Briefly, tissue samples were cut into small pieces, and transferred into 1.5mL tube containing lysing matrix D (MP Biomedicals, Santa Ana, CA, USA) and 600uL buffer RLT containing 1% beta-mercaptoethanol and homogenised using a Fast Prep benchtop homogeniser (MP Biomedicals, Santa Ana, CA, USA). Samples were spun 5 times using setting 6.5 for 30 seconds each, and chilled on ice between spins. Lysate was removed and transferred to a fresh tube. For unfixed BCC samples embedded in OCT, 20 x 10 micron sections were cut and placed into 600 µL buffer RLT, and homogenised using a 18.5 gauge blunt needle attached to an RNAse free syringe and resuspended 5 times. The remaining RNA extraction steps were performed as above. RNA concentration was measured using the Qubit fluorometer (Life Technologies, Carlsbad, CA) and RNA integrity determined using the 2100 Bioanalyser (Agilent Technologies, Palo Alto, CA) on RNA Pico chips. The minimum acceptable quality for RNA for analysis by qPCR was RIN >6. Complementary DNA (cDNA) was synthesised from 200 ng total RNA using the Sensifast cDNA kit (Bioline, London, UK) as per the manufacturer’s instructions. TruSeq stranded mRNA library prep kit was used to generate poly (A) RNA libraries for RNA obtained from normal health skin samples (Illumina, San Diego, CA, USA)

text: normal

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens


characteristic: External Id

text: unspecified

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens


text: JUSTUS LIEBIG UNIVERSITAT

text: public

characteristic: SRA accession

tag: Namespace:JUSTUS LIEBIG UNIVERSITAT

text: Whole genome sequencing of mcr-1-encoding isolates from Spain

text: Escherichia coli

text: Escherichia coli

text: mcr-1-encoding E. coli from Spain


text: FONDAZIONE EDMUND MACH

text: public

tag: Namespace:FONDAZIONE EDMUND MACH

characteristic: collection date

text: human

text: Low FODMAP diet and probiotics in irritable bowel syndrome: a 2x2 factorial design, randomised, placebo-controlled trial

characteristic: description

text: human

characteristic: environment (biome)

text: intestine

characteristic: environment (feature)

text: faecal microbiota

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: 51° 29' 56.76 N

characteristic: geographic location (latitude)

text: 0° 07' 8.08 E

characteristic: geographic location (longitude)

text: Low FODMAP or control sham diet, with or without probiotic supplementation

characteristic: host diet

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Ilumina MiSeq

characteristic: sequencing method

text: Low FODMAP and probiotics in IBS


text: synthetic construct

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: synthetic construct

characteristic: common name

text: synthetic construct

characteristic: organism

text: synthetic construct

characteristic: subject id

characteristic: title


text: Trichuris muris

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Trichuris muris

text: Trichuris muris

text: Trichuris muris

text: Trichuris muris


text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

text: Denmark

characteristic: description

text: Illumina MiSeq

characteristic: instrument model

text: Escherichia coli

characteristic: read length

text: Escherichia coli


HSOYLNLA

characteristic: ENA-CHECKLIST

text: STATENS SERUM INSTITUT

text: public

text: HSOYLNLA

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: HSOYLNLA


BYTFRUAB

characteristic: ENA-FIRST-PUBLIC

text: STATENS SERUM INSTITUT

text: public

text: BYTFRUAB

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: BYTFRUAB


BZRUFGOJ

characteristic: ENA-LAST-UPDATE

text: STATENS SERUM INSTITUT

text: public

text: BZRUFGOJ

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: BZRUFGOJ


RMNTEYFC

text: STATENS SERUM INSTITUT

characteristic: INSDC first public

text: public

text: RMNTEYFC

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: RMNTEYFC


OCPWYHFO

text: STATENS SERUM INSTITUT

characteristic: INSDC last update

text: public

text: OCPWYHFO

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: OCPWYHFO


OGLELQSO

text: STATENS SERUM INSTITUT

text: public

characteristic: INSDC status

text: OGLELQSO

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: OGLELQSO


SCMWAOEG

text: STATENS SERUM INSTITUT

text: public

text: SCMWAOEG

characteristic: Submitter Id

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: SCMWAOEG


YRMKVYHI

text: STATENS SERUM INSTITUT

text: public

text: YRMKVYHI

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: YRMKVYHI


EQYJZFGF

text: STATENS SERUM INSTITUT

text: public

text: EQYJZFGF

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: EQYJZFGF


JBVRSRGR

text: STATENS SERUM INSTITUT

text: public

text: JBVRSRGR

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: JBVRSRGR


SEJBXQUJ

text: STATENS SERUM INSTITUT

text: public

text: SEJBXQUJ

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: SEJBXQUJ


ZVJTHLQL

text: STATENS SERUM INSTITUT

text: public

text: ZVJTHLQL

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: ZVJTHLQL


DCYUJZRF

text: STATENS SERUM INSTITUT

text: public

text: DCYUJZRF

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: DCYUJZRF


ADXOKFNZ

text: STATENS SERUM INSTITUT

text: public

text: ADXOKFNZ

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: ADXOKFNZ


JVQMBITI

text: STATENS SERUM INSTITUT

text: public

text: JVQMBITI

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: JVQMBITI


DERTFKWM

text: STATENS SERUM INSTITUT

text: public

text: DERTFKWM

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: DERTFKWM


text: STATENS SERUM INSTITUT

text: public

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli


VOXARKGW

text: STATENS SERUM INSTITUT

text: public

text: VOXARKGW

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: VOXARKGW


TKXOBAOH

text: STATENS SERUM INSTITUT

text: public

text: TKXOBAOH

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: TKXOBAOH


BCHORAVS

text: STATENS SERUM INSTITUT

text: public

text: BCHORAVS

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: BCHORAVS


CSREQUDA

text: STATENS SERUM INSTITUT

text: public

text: CSREQUDA

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: CSREQUDA


MWYLETWU

text: STATENS SERUM INSTITUT

text: public

text: MWYLETWU

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: MWYLETWU


QETRAHLM

text: STATENS SERUM INSTITUT

text: public

text: QETRAHLM

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: QETRAHLM


YFYCCWAD

text: STATENS SERUM INSTITUT

text: public

text: YFYCCWAD

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: YFYCCWAD


TMXBUNSF

text: STATENS SERUM INSTITUT

text: public

text: TMXBUNSF

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: TMXBUNSF


NQVMDYHQ

text: STATENS SERUM INSTITUT

text: public

text: NQVMDYHQ

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: NQVMDYHQ


VMOUIXYY

text: STATENS SERUM INSTITUT

text: public

text: VMOUIXYY

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: VMOUIXYY


ECEIQVWV

text: STATENS SERUM INSTITUT

text: public

text: ECEIQVWV

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: ECEIQVWV


DMNAPEDO

text: STATENS SERUM INSTITUT

text: public

text: DMNAPEDO

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: DMNAPEDO


KUOWBHDA

text: STATENS SERUM INSTITUT

text: public

text: KUOWBHDA

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: KUOWBHDA


YXHMUIJS

text: STATENS SERUM INSTITUT

text: public

text: YXHMUIJS

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: YXHMUIJS


TSTMTUYP

text: STATENS SERUM INSTITUT

text: public

text: TSTMTUYP

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: TSTMTUYP


PFTVKRFD

text: STATENS SERUM INSTITUT

text: public

text: PFTVKRFD

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: PFTVKRFD


text: STATENS SERUM INSTITUT

text: public

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli


AVMJHTSK

text: STATENS SERUM INSTITUT

text: public

text: AVMJHTSK

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: AVMJHTSK


CODDWABT

text: STATENS SERUM INSTITUT

text: public

text: CODDWABT

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: CODDWABT


ZNPWMLSF

text: STATENS SERUM INSTITUT

text: public

text: ZNPWMLSF

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: ZNPWMLSF


QJZORXVC

text: STATENS SERUM INSTITUT

text: public

text: QJZORXVC

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: QJZORXVC


HWRUVMRA

text: STATENS SERUM INSTITUT

text: public

text: HWRUVMRA

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: HWRUVMRA


WVRKVJUV

text: STATENS SERUM INSTITUT

text: public

text: WVRKVJUV

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: WVRKVJUV


LYOJVLHM

text: STATENS SERUM INSTITUT

text: public

text: LYOJVLHM

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: LYOJVLHM


ISIVKUMQ

text: STATENS SERUM INSTITUT

text: public

text: ISIVKUMQ

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: ISIVKUMQ


TSJORKYG

text: STATENS SERUM INSTITUT

text: public

text: TSJORKYG

text: Denmark

text: Illumina MiSeq

text: Escherichia coli

text: Escherichia coli

text: TSJORKYG


text: gut metagenome

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: gut metagenome

characteristic: common name

text: gut metagenome

text: gut metagenome


text: feces metagenome

text: SC

text: public

text: feces metagenome

text: feces metagenome

characteristic: organism

text: feces metagenome

characteristic: subject id


characteristic: External Id

text: INSERM UMR 1064

text: public

tag: Namespace:INSERM UMR 1064

text: human

text: sample #5

text: Homo sapiens

text: Homo sapiens

text: fresh CD8+ Tregs CD45RClow

characteristic: title


text: INSERM UMR 1064

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: human

text: sample #3

text: Homo sapiens

text: Homo sapiens

text: fresh CD8+ Tregs CD45RClow


text: INSERM UMR 1064

text: public

text: human

text: sample #4

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: fresh CD8+ Tregs CD45RClow


text: INSERM UMR 1064

text: public

text: human

text: sample #1

text: Homo sapiens

text: Homo sapiens

text: fresh CD8+ Tregs CD45RClow


text: INSERM UMR 1064

text: public

text: human

text: sample #6

text: Homo sapiens

text: Homo sapiens

text: fresh CD8+ Tregs CD45RClow


text: INSERM UMR 1064

text: public

text: human

text: sample #2

text: Homo sapiens

text: Homo sapiens

text: fresh CD8+ Tregs CD45RClow


text: INSERM UMR 1064

text: public

text: human

text: sample #7

text: Homo sapiens

text: Homo sapiens

text: expanded CD8+ Tregs CD45RClow


text: INSERM UMR 1064

text: public

text: human

text: sample #8

text: Homo sapiens

text: Homo sapiens

text: expanded CD8+ Tregs CD45RClow


text: INSERM UMR 1064

text: public

text: human

text: sample #9

text: Homo sapiens

text: Homo sapiens

text: expanded CD8+ Tregs CD45RClow


text: INSERM UMR 1064

text: public

text: human

text: sample #11

text: Homo sapiens

text: Homo sapiens

text: expanded CD8+ Tregs CD45RClow


text: INSERM UMR 1064

text: public

text: human

text: sample #12

text: Homo sapiens

text: Homo sapiens

text: expanded CD8+ Tregs CD45RClow


text: Treponema pallidum subsp. pallidum str. Nichols

characteristic: ArrayExpress-Species

text: SC

text: public


text: WT

characteristic: ArrayExpress-PHENOTYPE

text: Neisseria meningitidis

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Neisseria meningitidis

text: Neisseria meningitidis

text: WT

characteristic: phenotype

text: Neisseria meningitidis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public


text: UNIVERSITY OF OSLO

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF OSLO

characteristic: Submitter Id

characteristic: collection date

text: clinical isolates from Ethiopia

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: patients

characteristic: isolate

text: sputum sample

characteristic: isolation source

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: MTB


characteristic: External Id

text: University of Jyvaskyla

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:University of Jyvaskyla

text: Soil

characteristic: description

text: arcto-alpine tundra biome

characteristic: environment (biome)

text: alpine tundra

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Diazotrophic bacterial communities in arcto-alpine plants

characteristic: project name

text: metagenome

text: Ion-Torrent

characteristic: sequencing method

characteristic: title


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Jyvaskyla

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Rhizosphere soil

text: arcto-alpine tundra biome

text: alpine tundra

text: soil

text: Austria

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Ion-Torrent


characteristic: External Id

text: University of Jyvaskyla

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Endosphere

characteristic: description

text: arcto-alpine tundra biome

characteristic: environment (biome)

text: alpine tundra

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Austria

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Ion-Torrent


characteristic: ENA-CHECKLIST

text: University of Jyvaskyla

text: public

text: Soil

text: arcto-alpine tundra biome

text: arctic tundra

text: soil

text: Finland

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Ion-Torrent

characteristic: sequencing method

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Jyvaskyla

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Rhizosphere soil

text: arcto-alpine tundra biome

text: arctic tundra

text: soil

text: Finland

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Ion-Torrent


characteristic: External Id

text: University of Jyvaskyla

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Endosphere

characteristic: description

text: arcto-alpine tundra biome

characteristic: environment (biome)

text: arctic tundra

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Finland

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Ion-Torrent


characteristic: ENA-CHECKLIST

text: University of Jyvaskyla

text: public

text: Soil

text: arcto-alpine tundra biome

text: arctic tundra

text: soil

text: Norway

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Ion-Torrent

characteristic: sequencing method

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Jyvaskyla

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Rhizosphere soil

text: arcto-alpine tundra biome

text: arctic tundra

text: soil

text: Norway

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Ion-Torrent


characteristic: External Id

text: University of Jyvaskyla

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Endosphere

characteristic: description

text: arcto-alpine tundra biome

characteristic: environment (biome)

text: arctic tundra

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Norway

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Ion-Torrent


text: viral metagenome

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: viral metagenome

characteristic: common name

text: viral metagenome

characteristic: organism

text: viral metagenome

characteristic: subject id

characteristic: title


text: viral metagenome

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-43-L01 (2)_chicken_2013-12-27


text: viral metagenome

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-43-L06 (2)_chicken_2013-12-27


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-08-L01 (1)_chicken_2013-05-27


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-08-L02 (1)_chicken_2013-05-27


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-08-L03 (1)_chicken_2013-05-27


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-43-L01 (1)_chicken_2013-06-21


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L01 (1)_chicken_2013-07-15


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L02 (1)_chicken_2013-07-15


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L03 (1)_chicken_2013-07-15


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L04 (1)_chicken_2013-07-15


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L05 (1)_chicken_2013-07-15


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L06 (1)_chicken_2013-07-15


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L07 (1)_chicken_2013-07-15


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-08-L01 (2)_chicken_2013-07-30


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-08-L02 (2)_chicken_2013-07-30


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-08-L03 (2)_chicken_2013-07-30


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L01 (2)_chicken_2013-08-07


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-43-L01 (3)_chicken_2013-10-01


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-43-L06 (1)_chicken_2013-10-01


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L02 (2)_chicken_2013-08-07


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L03 (2)_chicken_2013-08-07


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L04 (2)_chicken_2013-08-07


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L05 (2)_chicken_2013-08-07


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L06 (2)_chicken_2013-08-07


text: viral metagenome

text: SC

text: public

text: viral metagenome

text: viral metagenome

text: viral metagenome

text: 05VZ-75-04-L07 (2)_chicken_2013-08-07


text: Mus Musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

tag: Namespace:FUNCTIONAL GENOMICS CENTER ZURICH

text: house mouse

text: Mus musculus

text: Mus musculus


text: unspecified

text: public

text: ArrayExpress

characteristic: broker name

text: Protocols: P. fluorescens strains were grown at 28 degree Celsius in lysogenic broth. After bacterial growth, formaldehyde (1%) was added to the cultures and incubated at room temperature for 20 min, before the reaction was quenched with glycine (125 mM) for 5 min. Cells were collected and washed with cold PBS four times. The cells were lysed in 1 ml of lysis buffer solution (10 mM Tris-HCl pH8, 50 mM NaCl, 4 mg/ml lysozyme, 1x protease inhibitor). Cell extracts were then sonicated to fragment the DNA to an average size of 500bp. 50 µl of the extract was removed for total DNA preparation. For immunoprecipitation of RccR cross-linked DNA, a portion of the extract (1 ml) was immunoprecipitated with 10 µl of polyclonal anti-RccR antibody at 4 °C for 4h. After incubation with ProteinA affinity gel (Sigma) for 1h at 4 °C, the beads were washed twice with IP buffer (100 mM Tris-HCl pH 8.0, 250 mM NaCl, 0.5% Triton X-100, 0,1 % SDS, 1x protease inhibitor), and finally with TE buffer. The immunoprecipitated material was eluted with 100 µl of elution buffer (50 mM Tris-Cl pH 7.6, 10 mM EDTA, 1% SDS). Cross-linking of immunoprecipitated and total DNA was reversed by incubation at 65°C overnight. After Proteinase K (Roche) treatment, the immunoprecipitate and total DNA samples were extracted using phenol-chloroform and purified using a QiaQuick kit (Qiagen). Illumina TruSeq ChIP Library Preparation Kit was used to prepare the libraries which were then size-selected to 200 to 300 base pairs.

characteristic: description

text: rccR deletion

characteristic: genotype

text: M9 minimal medium with glycerol

characteristic: growth condition

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens


characteristic: ENA-CHECKLIST

text: unspecified

text: public

text: ArrayExpress

text: rccR deletion

text: M9 minimal medium with pyruvate

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens


text: unspecified

text: public

text: ArrayExpress

text: wild type genotype

text: M9 minimal medium with glycerol

text: Pseudomonas fluorescens

characteristic: organism

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens


text: unspecified

text: public

text: ArrayExpress

text: wild type genotype

text: M9 minimal medium with pyruvate

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens

text: Pseudomonas fluorescens


text: unspecified

text: public

text: ArrayExpress

text: Chemotherapy-resistant cancer, after orchiectomy

characteristic: clinical history

text: human

characteristic: common name

text: Protocols: Use of tissue samples remaining after diagnosis for scientific reasons was approved by Medical Ethical Committee (MEC) of the Erasmus MC Rotterdam (The Netherlands), permission 02.981. This included the permission to use the secondary tissue without further consent. Samples were used according to the 'Code for Proper Secondary Use of Human Tissue in The Netherlands' developed by the Dutch Federation of Medical Scientific Societies (FMWV (Version 2002, update 2011)). Tissues were stored frozen in liquid nitrogen or as formalin-fixed and paraffin-embedded (FFPE) blocs. RNA was extracted from frozen tissue samples using TRIZOL, DNase treated and purified on RNeasy column (Qiagen). QC was performed on Agilent Bioanalzer using a Eukaryote total RNA Pico chip, vs 2.6. RNA samples were rRNA reduced with RiboZero Gold and library preparation was performed using the using the Ion Total RNA-seq kit

text: testicular non-seminomatous germ cell tumor

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: testis

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: frozen tissue sample

characteristic: specimen with known storage state


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: unspecified

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Protocols: Use of tissue samples remaining after diagnosis for scientific reasons was approved by Medical Ethical Committee (MEC) of the Erasmus MC Rotterdam (The Netherlands), permission 02.981. This included the permission to use the secondary tissue without further consent. Samples were used according to the 'Code for Proper Secondary Use of Human Tissue in The Netherlands' developed by the Dutch Federation of Medical Scientific Societies (FMWV (Version 2002, update 2011)). Tissues were stored frozen in liquid nitrogen or as formalin-fixed and paraffin-embedded (FFPE) blocs. RNA was extracted from frozen tissue samples using TRIZOL and purified on RNeasy column (Qiagen) QC was performed on Agilent Bioanalzer using a Eukaryote total RNA Pico chip, vs 2.6. RNA samples were rRNA reduced with RiboZero Gold and library preparation was performed using the using the Ion Total RNA-seq kit

text: Homo sapiens

text: Homo sapiens

text: testis

text: Homo sapiens

text: male

text: frozen tissue sample

characteristic: title


text: synthetic construct

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: synthetic construct

text: synthetic construct

text: synthetic construct

characteristic: subject id


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:UNIVERSITY OF CALIFORNIA - SAN FRANCISCO

characteristic: collection date

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: month

characteristic: host age

text: high risk for asthma

characteristic: host disease status

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

characteristic: project name

text: human gut metagenome

text: 16S rRNA

characteristic: sequencing method

text: Infant gut microbiota