E-MTAB-5763:Sample 34

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-5763:Sample 34

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

characteristic: sex

text: Sample 34


E-MTAB-5763:Sample 35

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5763:Sample 35

tag: Namespace:VIB Center for Cancer Biology (CCB)   Laboratory for Translational Genetics  Department of Human Genetics

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Samples were obtained during necessary surgery and stored in -80°C (fresh-frozen) or in paraffin (FFPE) for scientific research upon obtaining patients' informed consent. Whole genome DNA libraries were created using the Illumina TruSeq DNA sample preparation kit V2 according to the manufacturer’s instructions

characteristic: description

text: uterine leiomyosarcoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: myometrium

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 35

characteristic: title


E-MTAB-5762:Sample 1

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-5762:Sample 1

tag: Namespace:VIB Center for Cancer Biology   Laboratory for Translational Genetics  Department of Human Genetics KULeuven Campus Gasthuisberg, O&N4 Herestraat 49-B912 B-3000 Leuven, Belgium

text: ArrayExpress

text: human

text: Protocols: Samples were obtained during necessary surgery and stored in -80°C (fresh-frozen) or in paraffin (FFPE) for scientific research upon obtaining patients' informed consent. RNA libraries were created using the Illumina TruSeq RNA sample preparation kit V2 according to the manufacturer’s instructions.

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1


E-MTAB-5762:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: VIB Center for Cancer Biology Laboratory for Translational Genetics Department of Human Genetics KULeuven Campus Gasthuisberg, O&N4 Herestraat 49-B912 B-3000 Leuven, Belgium

text: public

text: E-MTAB-5762:Sample 2

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 2


E-MTAB-5762:Sample 3

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5762:Sample 3

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-5762:Sample 4

text: public

characteristic: INSDC status

text: E-MTAB-5762:Sample 4

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 4


E-MTAB-5762:Sample 5

text: public

text: E-MTAB-5762:Sample 5

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: uterine leiomyosarcoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 5


E-MTAB-5762:Sample 6

text: public

text: E-MTAB-5762:Sample 6

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: myometrium

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 6


E-MTAB-5762:Sample 7

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-5762:Sample 7

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 7

characteristic: title


E-MTAB-5762:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5762:Sample 8

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

characteristic: sex

text: Sample 8


E-MTAB-5762:Sample 9

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5762:Sample 9

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 9


E-MTAB-5762:Sample 10

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5762:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-5762:Sample 11

text: public

text: E-MTAB-5762:Sample 11

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 11


E-MTAB-5762:Sample 12

text: public

text: E-MTAB-5762:Sample 12

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 12


E-MTAB-5762:Sample 13

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-5762:Sample 13

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: myometrium

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 13


E-MTAB-5762:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5762:Sample 14

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 14

characteristic: title


E-MTAB-5762:Sample 15

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5762:Sample 15

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

characteristic: sex

text: Sample 15


E-MTAB-5762:Sample 16

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5762:Sample 16

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 16


E-MTAB-5762:Sample 17

text: public

text: E-MTAB-5762:Sample 17

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 17


E-MTAB-5762:Sample 18

text: public

text: E-MTAB-5762:Sample 18

text: ArrayExpress

text: human

characteristic: description

text: uterine leiomyosarcoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 18


E-MTAB-5762:Sample 19

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-5762:Sample 19

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 19


E-MTAB-5762:Sample 20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5762:Sample 20

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: myometrium

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 20


E-MTAB-5762:Sample 21

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5762:Sample 21

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 21

characteristic: title


E-MTAB-5762:Sample 22

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5762:Sample 22

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

characteristic: sex

text: Sample 22


E-MTAB-5762:Sample 23

text: public

characteristic: INSDC status

text: E-MTAB-5762:Sample 23

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 23


E-MTAB-5762:Sample 24

text: public

text: E-MTAB-5762:Sample 24

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: uterine leiomyosarcoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 24


E-MTAB-5762:Sample 25

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-5762:Sample 25

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 25


E-MTAB-5762:Sample 26

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5762:Sample 26

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 26


E-MTAB-5762:Sample 27

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5762:Sample 27

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 27


E-MTAB-5762:Sample 28

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5762:Sample 28

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 28

characteristic: title


E-MTAB-5762:Sample 29

text: public

characteristic: INSDC status

text: E-MTAB-5762:Sample 29

characteristic: Submitter Id

text: ArrayExpress

text: human

text: uterine leiomyosarcoma

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

characteristic: sex

text: Sample 29


E-MTAB-5762:Sample 30

text: public

text: E-MTAB-5762:Sample 30

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: normal

text: Homo sapiens

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

text: Sample 30


text: female

characteristic: ArrayExpress-SEX

text: Burkholderia cepacia

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

text: Burkholderia cepacia

text: Female

characteristic: gender

text: Burkholderia cepacia

text: Burkholderia cepacia

characteristic: subject id


text: male

text: Burkholderia cepacia

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Burkholderia cepacia

text: Male

text: Burkholderia cepacia

characteristic: organism

text: Burkholderia cepacia


text: Burkholderia cepacia

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Burkholderia cepacia

text: Burkholderia cepacia

text: Burkholderia cepacia

characteristic: title


text: female

text: Klebsiella pneumoniae

text: SC

text: public

characteristic: Submitter Id

text: Klebsiella pneumoniae

characteristic: common name

text: Female

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: male

characteristic: ArrayExpress-SEX

text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: Male

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-LAST-UPDATE

text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

characteristic: collection date

text: CAMBI-1 genome

characteristic: description

text: Anaerobic digester

characteristic: environment (biome)

text: Full-scale CAMBI

characteristic: environment (feature)

text: Anaerobic digester biomass

characteristic: environment (material)

text: Denmark

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Anaerolineaceae bacterium CAMBI-1

text: Genome sequence of CAMBI-1

characteristic: project name

text: Anaerolineaceae bacterium CAMBI-1

text: Illumina

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

characteristic: Submitter Id

text: Pristionchus pacificus

text: JU138 RNA

text: Pristionchus pacificus

characteristic: organism

text: Pristionchus pacificus

characteristic: title


characteristic: ENA-LAST-UPDATE

text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: Pristionchus pacificus

characteristic: common name

text: RS5200 RNA

characteristic: description

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Pristionchus pacificus

text: RS5279 RNA

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Pristionchus pacificus

text: RS5410 RNA

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: Micoletzkya masseyi

text: RS5540 RNA

text: Micoletzkya masseyi

text: Micoletzkya masseyi


text: whole embryo

text: Danio rerio

characteristic: ArrayExpress-SPECIES

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Danio rerio

characteristic: subject id


text: Salmonella enterica subsp. enterica serovar Typhi

text: SC

text: public


text: public

tag: Namespace:The ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia

text: ArrayExpress

characteristic: broker name

text: Arabidopsis Col0 cell line

characteristic: cell line

text: thale cress

text: Protocols: Cells were collected from the culture by filtration, immediately frozen in liquid nitrogen and ground in a mortar. Arabidopsis thaliana (Col-0) cell lines were grown in Murashige and Skoog (MS) medium supplied with 3% (w/v) sucrose, pH 5.7 in the dark at 25°C, shaken at 140 rpm (Pesquet et al., 2010). Cells were subcultured weekly by a 1:10 dilution. For all experiments, 7-day-old cells from dark conditions were subcultured in a 1:10 ratio in MS medium 1% (w/v) sucrose, equilibrated and placed in a growth cabinet under continuous light (150 μmol photons m-2 s-1) and constant rotary agitation. After seven days in the light, cells were pelleted without centrifugation and the medium was replaced. Cells were placed back in the light until 14 days for the final sample. Total RNA was isolated using the mirVana miRNA Isolation kit (Ambion) according to manufacturer ́s instructions. RNA was quantified with a Nanodrop ND-100 spectrophotometer and RNA quality was checked by electrophoresis on a 1% agarose gel. RNA samples were ethanol precipitated and diluted to 500 ng/μL. RNA quality was assessed using an Agilent 2100 bioanalyzer (Agilent Technologies) and the RNA was quantified with a Qubit 2.0 fluorometer (Thermo-Fisher Scientific), both according to manufacturer’s instructions. RNA-Seq libraries were prepared using the TruSeq Stranded Total RNA with Ribo-Zero Plant Kit (Illumina), according to manufacturer’s instructions, using half-reactions and 200 ng RNA. Successful rRNA depletion was verified by electrophoresis using the High Sensitivity RNA ScreenTape System on the Agilent 2200 TapeStation (Agilent Technologies), according to manufacturer’s instructions. Enrichment of cDNA fragments was performed using 11 cycles generating cDNA fragments of ~270 bp.

characteristic: ecotype

text: continuous light regimen

characteristic: growth condition

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: biological replicate of 1

characteristic: replicate

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: The ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Arabidopsis Col0 cell line

text: thale cress

text: continuous light regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: biological replicate of 1

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Arabidopsis Col0 cell line

text: thale cress

text: continuous light regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: biological replicate of 2

text: Arabidopsis thaliana

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: Arabidopsis Col0 cell line

characteristic: cell line

text: thale cress

characteristic: common name

characteristic: description

text: continuous light regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: biological replicate of 3

text: Arabidopsis thaliana


text: public

text: ArrayExpress

text: Arabidopsis Col0 cell line

text: thale cress

characteristic: ecotype

text: continuous light regimen

characteristic: growth condition

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: biological replicate of 4

characteristic: replicate

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Arabidopsis Col0 cell line

text: thale cress

text: continuous light regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: biological replicate of 5

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Arabidopsis Col0 cell line

text: thale cress

text: continuous light regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: biological replicate of 6

text: Arabidopsis thaliana


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Arabidopsis Col0 cell line

text: thale cress

text: continuous light regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: biological replicate of 7

text: Arabidopsis thaliana

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: Arabidopsis Col0 cell line

characteristic: cell line

text: thale cress

characteristic: common name

characteristic: description

text: continuous light regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: biological replicate of 8

text: Arabidopsis thaliana


text: unidentified

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: unidentified

text: unidentified

text: unidentified

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TUM

text: public

characteristic: collection date

text: freshwater

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: IMOTOX

characteristic: project name

text: freshwater metagenome

text: Illumnina MiSeq

characteristic: sequencing method

text: Temporal dynamics of the toxic cyanobacterial community composition and toxin presence in two South German lakes

text: water

characteristic: water environmental package

type: has member


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PENN STATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:PENN STATE

characteristic: Submitter Id

characteristic: culture collection

text: Aposymbiotic scyphistomae

characteristic: description

text: Cassiopea xamachana

characteristic: organism

text: Cassiopea xamachana

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PENN STATE

text: public

text: Scyphistomae 3 days post-infection with dinoflagellate symbiont Symbiodinium microadriaticum

text: Cassiopea xamachana

text: Cassiopea xamachana


text: PENN STATE

text: public

text: Scyphistomae 8 days post-infection with dinoflagellate symbiont Symbiodinium microadriaticum

text: Cassiopea xamachana

text: Cassiopea xamachana


text: PENN STATE

text: public

text: Scyphistomae undergoing strobilation (Strobila)

text: Cassiopea xamachana

text: Cassiopea xamachana

text: Strobila


text: Mycobacterium Bovis

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Mycobacterium Bovis

characteristic: common name

text: Mycobacterium bovis AF2122/97

text: Mycobacterium bovis AF2122/97

characteristic: subject id


text: Mycobacterium bovis

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Mycobacterium bovis

text: Mycobacterium bovis AF2122/97

text: Mycobacterium bovis AF2122/97


characteristic: External Id

text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

text: Illumina MiSeq

characteristic: instrument model

text: Staphylococcus aureus

text: Pig

characteristic: origin

characteristic: read length

text: Staphylococcus aureus


text: STATENS SERUM INSTITUT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: unspecified

text: Staphylococcus aureus

text: Pig

text: Staphylococcus aureus


status: PRIVATE

characteristic: ACCESSION

text: STATENS SERUM INSTITUT

text: private

text: NextSeq 550

text: Pig

characteristic: ORIGIN

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: STATENS SERUM INSTITUT

text: public

text: unspecified

text: Staphylococcus aureus

characteristic: organism

text: Human

text: Staphylococcus aureus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STATENS SERUM INSTITUT

text: private

text: unspecified

text: Human

text: Staphylococcus aureus

text: Staphylococcus aureus


text: STATENS SERUM INSTITUT

text: private

text: Illumina MiSeq

text: Pig

text: Staphylococcus aureus

text: Staphylococcus aureus


text: STATENS SERUM INSTITUT

text: public

text: Illumina MiSeq

characteristic: instrument model

text: Staphylococcus aureus

text: Human

characteristic: origin

text: Staphylococcus aureus


text: STATENS SERUM INSTITUT

characteristic: INSDC center name

text: private

text: Illumina MiSeq

text: Human

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: PASTEUR

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: gut

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: fecal

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: N 46°0'0

characteristic: geographic location (latitude)

text: E 2°0'0

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Escherichia coli

text: Ecoli 1094 genome sequence

characteristic: project name

text: Escherichia coli

text: PacBio

characteristic: sequencing method

text: E. coli strain 1094


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Paucisalibacillus globulus

characteristic: organism

text: Paucisalibacillus globulus

text: PG

characteristic: strain

text: Paucisalibacillus globulus genome

characteristic: title


text: synthetic construct

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: synthetic construct

characteristic: common name

text: synthetic construct

text: synthetic construct

characteristic: subject id


text: Streptococcus pyogenes

text: SC

text: public

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: Enterococcus faecium

text: VRE RBWH1

text: SC

text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Enterococcus faecium

text: VRE RBWH1


text: TGAC

text: public

text: TGAC

characteristic: broker name

text: Hymenoscyphus fraxineus KW1

characteristic: description

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus KW1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UOM

text: public

text: baker's yeast

text: PacBio whole genome shotgun sequences of DNA extracted from an overnight culture of S. cerevisiae strain S288c

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: S. cerevisiae strain S288c


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOM

text: public

text: baker's yeast

text: PacBio whole genome shotgun sequences of DNA extracted from an overnight culture of S. cerevisiae strain SDO2s1

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: S. cerevisiae strain SDO2s1


text: UOM

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: baker's yeast

text: PacBio whole genome shotgun sequences of DNA extracted from an overnight culture of S. cerevisiae strain YPS606m

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: S. cerevisiae strain YPS606m


text: UOM

text: public

characteristic: Submitter Id

text: baker's yeast

text: PacBio whole genome shotgun sequences of DNA extracted from an overnight culture of S. cerevisiae strain ZP568s1

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: S. cerevisiae strain ZP568s1


text: UOM

text: public

text: baker's yeast

text: PacBio whole genome shotgun sequences of DNA extracted from an overnight culture of S. cerevisiae strain ZP655.1A

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: S. cerevisiae strain ZP655.1A

characteristic: title


text: University of Goettingen

text: public

tag: Namespace:University of Goettingen

characteristic: collection date

text: Leaf samples of grey poplars non-inoculated [N] with Laccaria bicolor and not fed on [C] by Chrysomela populi

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Populus tremula x Populus alba

text: grey poplar

characteristic: organism common name

characteristic: plant developmental stage

characteristic: plant growth medium

characteristic: plant structure

text: asexual

characteristic: propagation

text: Populus tremula x Populus alba

text: INRA clone 717-1B4

characteristic: subspecific genetic lineage name

text: non-mycorrhized control


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Goettingen

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Leaf samples of grey poplars inoculated [M] with Laccaria bicolor and not fed on [C] by Chrysomela populi

characteristic: description

text: Germany

text: Populus tremula x Populus alba

text: grey poplar

text: asexual

text: Populus tremula x Populus alba

text: INRA clone 717-1B4

text: mycorrhized control


text: University of Goettingen

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Leaf samples of grey poplars non-inoculated [N] with Laccaria bicolor and fed on [B] by Chrysomela populi

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Populus tremula x Populus alba

characteristic: organism

text: grey poplar

text: asexual

text: Populus tremula x Populus alba

text: INRA clone 717-1B4

text: non-mycorrhized with beetles

characteristic: title


text: University of Goettingen

text: public

text: Leaf samples of grey poplars inoculated [M] with Laccaria bicolor and fed on [B] by Chrysomela populi

text: Germany

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Populus tremula x Populus alba

text: grey poplar

characteristic: organism common name

characteristic: plant developmental stage

characteristic: plant growth medium

characteristic: plant structure

text: asexual

characteristic: propagation

text: Populus tremula x Populus alba

text: INRA clone 717-1B4

characteristic: subspecific genetic lineage name

text: mycorrhized with beetles


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TGAC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TGAC

characteristic: broker name

text: Genome assembly of Hymenoscyphus fraxineus

characteristic: description

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus

text: Hymenoscyphus fraxineus WGS v2


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: subject id

characteristic: title


characteristic: ENA-CHECKLIST

text: JIC

text: public

text: Primula scotica

text: Primula scotica


characteristic: ENA-FIRST-PUBLIC

text: JIC

text: public

text: Primula farinosa

text: Primula farinosa


characteristic: ENA-LAST-UPDATE

text: JIC

text: public

text: Primula vulgaris

text: Primula vulgaris

text: primula_vulgaris_long_homostyle_chilterns


characteristic: External Id

text: JIC

text: public

text: Primula veris

text: Primula veris


text: ESTONIAN BIOCENTRE, ESTONIA

characteristic: INSDC first public

text: public

tag: Namespace:ESTONIAN BIOCENTRE, ESTONIA

text: human

text: Homo sapiens

text: Homo sapiens

text: Estonian Neolithic aDNA


E-MTAB-5781:Sample 1

characteristic: INSDC last update

text: public

text: E-MTAB-5781:Sample 1

tag: Namespace:Division of Virology, University of Cambridge

text: ArrayExpress

text: Protocols: Adult worker Lasius niger, Lasius neglectus, Lasius flavus, Myrmica scabrinodis and Formica fusca ants and adult queen Lasius flavus ants were collected from individual nests in Cambridge, UK. Total RNA was extracted from 10-20 adult ants (or 5 queens) using Trizol (Invitrogen) following the manufacturer's instructions. RNA was treated with DNase (Promega, RQ1 RNase-free DNase). Ribosomal RNA was depleted using the Ribo-Zero kit (Illumina), and remaining RNA subjected to alkaline hydrolysis, followed by acrilamide gel purification of RNA bands within the size range 35-50 nt for L. niger and 70-85 for the other species. All library amplicons were constructed using a small RNA cloning strategy (Cook et al., 2013, PMID 24260463; Guo et al., 2010, PMID 20703300).

text: adult

characteristic: developmental stage

text: Lasius niger

text: Lasius niger

text: whole organism

characteristic: organism part

text: RNA-seq

characteristic: protocol

characteristic: replicate

text: Lasius niger

text: Sample 1


E-MTAB-5781:Sample 2

text: Division of Virology, University of Cambridge

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-5781:Sample 2

text: ArrayExpress

characteristic: broker name

characteristic: description

text: adult

text: Lasius flavus

text: Lasius flavus

text: whole organism

text: RNA-seq

text: Lasius flavus

text: Sample 2


E-MTAB-5781:Sample 3

text: public

characteristic: SRA accession

text: E-MTAB-5781:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: adult

text: Formica fusca

characteristic: organism

text: Formica fusca

text: whole organism

text: RNA-seq

text: Formica fusca

text: Sample 3


E-MTAB-5781:Sample 4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5781:Sample 4

text: ArrayExpress

text: adult

text: Lasius flavus

text: Lasius flavus

text: whole organism

text: RNA-seq

text: Lasius flavus

text: Sample 4

characteristic: title


E-MTAB-5781:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5781:Sample 5

text: ArrayExpress

text: adult

text: Lasius neglectus

text: Lasius neglectus

text: whole organism

text: RNA-seq

text: Lasius neglectus

text: Sample 5


E-MTAB-5781:Sample 6

characteristic: External Id

characteristic: INSDC first public

text: public

text: E-MTAB-5781:Sample 6

text: ArrayExpress

text: adult

text: Myrmica scabrinodis

text: Myrmica scabrinodis

text: whole organism

text: RNA-seq

text: Myrmica scabrinodis

text: Sample 6


CECT 8489

text: UVEG

characteristic: INSDC last update

text: public

text: CECT 8489

characteristic: collection date

text: sediment

characteristic: environment (biome)

text: Tidal flat sediment

characteristic: environment (feature)

text: tidal flat sediment at Boseong in South Korea

characteristic: environment (material)

text: South Korea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Boseongicola aestuarii

text: Whole genome sequencing of Boseongicola aestuarii CECT 8489, type strain.

characteristic: project name

text: Boseongicola aestuarii

text: sediment

characteristic: sediment environmental package

text: llumina Miseq

characteristic: sequencing method

text: CECT 8489

characteristic: strain

text: Boseongicola aestuarii CECT 8489


CECT 8621

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UVEG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CECT 8621

characteristic: Submitter Id

text: water

text: water

text: Water was collected from the junction between the ocean and a freshwater spring at Jeju island of South Korea

text: South Korea

text: mimarks-survey

text: Confluentimicrobium lipolyticum

characteristic: organism

text: Whole genome sequencing of Confluentimicrobium lipolyticum CECT 8621, type strain.

text: Confluentimicrobium lipolyticum

text: Illumina Miseq

text: CECT 8621

characteristic: title

text: water

characteristic: water environmental package


text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

characteristic: common name

text: Male

characteristic: gender

text: Mus musculus

text: Mus musculus

characteristic: subject id


CECT 8649

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UVEG

text: public

text: CECT 8649

characteristic: collection date

text: seawater

characteristic: environment (biome)

text: seawater

characteristic: environment (feature)

text: seawater collected off the coast of Ishigaki Island, Japan

characteristic: environment (material)

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Tropicibacter phthalicicus

text: Whole genome sequencing of Tropicibacter phthalicicus CECT 8649, type strain.

characteristic: project name

text: Tropicibacter phthalicicus

text: Illumina Miseq

characteristic: sequencing method

text: CECT 8649

characteristic: strain

text: Tropicibacter phthalicicus CECT 8649

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Flicek group European Bioinformatics Institute (EMBL-EBI)

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: western European house mouse

characteristic: common name

text: Protocols: Liver tissue from three male individuals from the Mus species was crosslinked, dounced and lysed as described in Schmidt et al. 2009. (PMID: 19275939) The chromatin was sonicated using a Misonix sonicator 3000 homogenizer with 12 cycles of 30s ON and 60s OFF at a power-output 30 Watt. CTCF was immunoprecipitated using the Merck-Millipore antibody (cat# 07-729) and NGS libraries prepared according to Schmidt et al. 2009 (PMID: 19275939) ligating Illumina’s low-plex TruSeq adapters.

characteristic: description

text: adult

characteristic: developmental stage

characteristic: individual

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: liver

characteristic: organism part

text: Mus musculus domesticus

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Flicek group European Bioinformatics Institute (EMBL-EBI)

text: public

text: ArrayExpress

text: western European house mouse

text: adult

text: Mus musculus domesticus

text: Mus musculus domesticus

text: liver

text: Mus musculus domesticus

text: male

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: shrew mouse

text: adult

text: Mus pahari

text: Mus pahari

text: liver

text: Mus pahari

text: male

text: Pahari


text: public

characteristic: Submitter Id

text: not available

characteristic: age

text: ArrayExpress

characteristic: broker name

text: shrew mouse

characteristic: common name

characteristic: description

text: adult

text: Mus pahari

text: Mus pahari

text: liver

text: Mus pahari

text: male

text: Pahari


text: public

text: ArrayExpress

text: Ryukyu mouse

text: adult

characteristic: developmental stage

characteristic: individual

text: Mus caroli

characteristic: organism

text: Mus caroli

text: liver

characteristic: organism part

text: Mus caroli

text: male

characteristic: sex

text: CAROLI/EiJ


text: synthetic construct

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: synthetic construct

text: synthetic construct

text: synthetic construct

characteristic: subject id

characteristic: title


text: female

characteristic: ArrayExpress-SEX

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Female

characteristic: gender

text: Mus musculus

text: Mus musculus


text: Regeneron Pharmaceuticals

text: public

tag: Namespace:Regeneron Pharmaceuticals

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: Protocols: The experimental rats were anaesthetized, mechanically ventilated and treated with α-cobratoxin for durations varying from 6 h to 14 days. Briefly, all surgery was performed under sterile techniques. 1) Precordial silver wire electrocardiogram (ECG) electrodes were implanted subcutaneously. 2) An aortic catheter (28-gauge Teflon) was inserted via the left carotid artery to record arterial blood pressure. 3) A 0.9 mm Renathane catheter was threaded into the left jugular vein to record venous blood pressure and administers parental solutions. 4) Three subcutaneous electroencephalogram needles were placed into the skull above the right and left temporal lobes and a third reference electrode was placed in the neck region. 5) Temperature was measured by a vaginal thermistor and servo regulated at 37 °C. 6) A silicon cannula was inserted in the urethra to continuously record urine output. Animals were maintained in protein and ﬂuid balance with an intra-arterial solution (0.6 ml/h) consisting of 50 ml H2O, 50 ml 0.5 N lactated Ringer solution, 1.25 g sodium oxacillin, 2.8 mg α-cobratoxin, 0.3 mg vitamin K (Synkavite) and 20 meq K+ (as KCl), as well as with an intra-venous solution (0.6 ml/h) consisting of 50 ml H2O, 50 ml 0.5 N lactated Ringer solution, 20% glucose (Baxter, Deerﬁeld, IL, USA) and 1.25 g sodium oxacillin. The sham operated controls rat underwent the same intervention as the experimental group animals but were not pharmacological paralyzed with α-cobratoxin. During surgery or at any possible irritating manipulation, the anesthetic isoflorane level was >1.5%. Isoflorane was delivered into the inspiratory gas stream by a precision mass-flow controller. After the initial surgery, isoflorane was gradually lowered over 1-2 days and maintained at < 0.5% during the remaining experimental period. Rats were ventilated through a per os coaxial tracheal cannula at 72 breaths/minute with an inspiratory and expiratory ratio of 1:2 and a minute volume of 180-200 ml. Neuromuscular blockade (NMB) was induced on the first day and maintained by continuous infusion. Mechanical ventilation was started immediately after the NMB induction. The left leg of the animal was activated for 6 hours at the shortest duration and 12 hours per day at duration 12 hours and longer throughout the experiment, using a mechanical lever arm that produces a continuous passive maximal ankle joint flexion-extension at a speed of 13.3 cycles per minute. Total RNA was isolated from the proximal part of gastrocnemius muscle using spin column purification RNAeasy (QIAGEN, Hilden, Germany). 300 ng of total RNA were extracted from the muscle samples. The proximal part was reversed transcribed to cDNA using Qscript cDNA super mix (Quanta Biosciences, Gaithersburg, Maryland, USA) and was diluted into a final volume of 100 µL. Primers were designed using the software Primer 3 (http://biotools.umassmed.edu/bioapps/primer3_www.cgi) and ordered from Sigma-Aldrich (Sigma-Aldrich, St Louis, Missouri, USA). cDNA was amplified in triplicate using MyiQ™single color real time PCR detection system (Bio-Rad Laboratories, Inc., Hercules, California, USA). Sequencing libraries were constructed using the ScriptSeq mRNA-Seq Library Preparation Kit (Epicentre).

characteristic: description

characteristic: individual

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: Rattus norvegicus

text: Sprague Dawley

characteristic: strain

text: diaphragm

characteristic: tissue


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Regeneron Pharmaceuticals

text: public

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: Rattus norvegicus

text: Sprague Dawley

text: intercostal muscle


text: Trypanosoma congolense

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense


text: UCSF

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: Endotrachael Aspirate

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Y

characteristic: host disease (ards)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: human lung metagenome

characteristic: project name

text: human lung metagenome

text: 16S rRNA-gene

characteristic: sequencing method

text: Smoker

characteristic: smokingbycot

characteristic: time point (hr)

text: Trauma Patient lung microbiota

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: urban biome

text: human-associated habitat

text: Endotrachael Aspirate

text: USA

text: N

text: human-associated

text: metagenome

text: human lung metagenome

characteristic: organism

text: human lung metagenome

text: 16S rRNA-gene

text: Smoker

text: Trauma Patient lung microbiota


text: UCSF

text: public

characteristic: SRA accession

characteristic: collection date

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: Endotrachael Aspirate

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: N

characteristic: host disease (ards)

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: human lung metagenome

text: human lung metagenome

text: 16S rRNA-gene

text: Non smoker

text: Trauma Patient lung microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

text: urban biome

text: human-associated habitat

text: Endotrachael Aspirate

text: USA

text: Y

text: human-associated

text: metagenome

characteristic: investigation type

text: human lung metagenome

characteristic: project name

text: human lung metagenome

text: 16S rRNA-gene

characteristic: sequencing method

text: Non smoker

characteristic: smokingbycot

characteristic: time point (hr)

text: Trauma Patient lung microbiota

characteristic: title


text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: Endotrachael Aspirate

text: USA

text: N

text: human-associated

text: metagenome

text: human lung metagenome

characteristic: organism

text: human lung metagenome

text: 16S rRNA-gene

text: Passive smoker

text: Trauma Patient lung microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

text: urban biome

text: human-associated habitat

text: Endotrachael Aspirate

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Y

characteristic: host disease (ards)

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: human lung metagenome

text: human lung metagenome

text: 16S rRNA-gene

text: Passive smoker

text: Trauma Patient lung microbiota


text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: urban biome

text: human-associated habitat

text: Endotrachael Aspirate

text: USA

text: human-associated

text: metagenome

characteristic: investigation type

text: human lung metagenome

characteristic: project name

text: human lung metagenome

text: 16S rRNA-gene

characteristic: sequencing method

text: Passive smoker

characteristic: smokingbycot

characteristic: time point (hr)

text: Trauma Patient lung microbiota

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: Endotrachael Aspirate

text: USA

text: human-associated

text: metagenome

text: human lung metagenome

characteristic: organism

text: human lung metagenome

text: 16S rRNA-gene

text: Smoker

text: Trauma Patient lung microbiota


text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human-associated habitat

text: Buffer Ctrl

text: Buffer Ctrl

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Buffer Ctrl

characteristic: host disease (ards)

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: human lung metagenome

text: human lung metagenome

text: 16S rRNA-gene

text: Buffer Ctrl

text: Trauma Patient lung microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

text: urban biome

text: human-associated habitat

text: Buffer Ctrl

text: USA

text: Buffer Ctrl

text: human-associated

text: metagenome

characteristic: investigation type

text: human lung metagenome

characteristic: project name

text: human lung metagenome

text: 16S rRNA-gene

characteristic: sequencing method

text: Buffer Ctrl

characteristic: smokingbycot

text: Buffer Ctrl

characteristic: time point (hr)

text: Trauma Patient lung microbiota

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:State Key Laboratory of Lake Science and Environment

characteristic: Submitter Id

characteristic: collection date

text: large lake biome

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: lake sediment

text: China

text: metagenome

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: unidentified bacterium

characteristic: organism

text: Microcystis biodegradation

text: unidentified bacterium

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: State Key Laboratory of Lake Science and Environment

text: public

text: large lake biome

text: lake

text: lake sediment

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: unidentified bacterium

text: Microcystis biodegradation

text: unidentified bacterium

text: Illumina Miseq


text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hypothalamus tissue

characteristic: cell type

text: chicken

characteristic: common name

text: H3K27me3 ChIP-seq data from fixed hypothalamus, replicate 1

characteristic: description

text: 35 days of age

characteristic: dev stage

text: Gallus gallus

text: Gallus gallus

text: male

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hypothalamus tissue

text: chicken

text: H3K27me3 ChIP-seq data from fixed hypothalamus, replicate 2

text: 35 days of age

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: male


text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Hypothalamus tissue

text: chicken

text: Input data from fixed hypothalamus, replicate 1

text: 35 days of age

text: Gallus gallus

text: Gallus gallus

text: male


text: INRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hypothalamus tissue

text: chicken

text: Input data from fixed hypothalamus, replicate 2

text: 35 days of age

text: Gallus gallus

text: Gallus gallus

text: male


text: INRA

text: public

text: Pectoralis major tissue

characteristic: cell type

text: chicken

characteristic: common name

text: H3K27me3 native ChIP-seq data from muscle, replicate 1

text: 35 days of age

text: Gallus gallus

text: Gallus gallus

text: male


text: INRA

text: public

text: Pectoralis major tissue

text: chicken

text: H3K27me3 native ChIP-seq data from muscle, replicate 2

characteristic: description

text: 35 days of age

characteristic: dev stage

text: Gallus gallus

text: Gallus gallus

text: male


text: INRA

text: public

text: Pectoralis major tissue

text: chicken

text: native input data from muscle, replicate 1

text: 35 days of age

text: Gallus gallus

text: Gallus gallus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

text: INRA

text: public

text: Pectoralis major tissue

text: chicken

text: native input data from muscle, replicate 2

text: 35 days of age

text: Gallus gallus

text: Gallus gallus

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Pectoralis major tissue

text: chicken

text: H3K27me3 ChIP-seq data from fixed muscle, replicate 1

text: 35 days of age

text: Gallus gallus

text: Gallus gallus

text: male


characteristic: External Id

text: INRA

text: public

characteristic: SRA accession

text: Pectoralis major tissue

text: chicken

text: H3K27me3 ChIP-seq data from fixed muscle, replicate 2

text: 35 days of age

text: Gallus gallus

text: Gallus gallus

text: male


text: INRA

text: public

characteristic: Submitter Id

text: Pectoralis major tissue

text: chicken

text: Input data from fixed muscle, replicate 1

text: 35 days of age

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: male


text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Pectoralis major tissue

text: chicken

text: Input data from fixed muscle, replicate 2

text: 35 days of age

text: Gallus gallus

text: Gallus gallus

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Washington University School of Medicine

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: We retrospectively obtained de-identified FFPE tissue from patients who underwent ileo-colic resection surgery at Barnes-Jewish Hospital, St. Louis between 2005 and 2010. CD patient surgical resections were due to complications associated with the disease, whereas control resections were due to adenoma, carcinoma or abdominal trauma. The set of hematoxylin and eosin-stained tissue sections from each resection were obtained and examined by two pathologists (T.C.L. and T.S.S.) to identify the uninvolved proximal margin (terminal ileum) of each resection. These tissue sections were then further evaluated to identify those that met the histological inclusion criteria for this study. The criteria were that the sample had at least 100 well-oriented intestinal crypts (contained crypt lumens that extended from the apex to the base of the crypt) and absent/minimal active or chronic inflammatory disease (e.g., cryptitis, crypt abscess, architectural distortion, pyloric gland metaplasia, etc.).The study protocol was approved by the Institutional Review Board of Washington University. Patients were recruited by the Washington University Digestive Diseases Research Core Center (DDRCC). Written informed consent was obtained from all study participants prior to inclusion in the study. For samples that met the histological inclusion criteria, two fresh, unstained 5-µm FFPE tissue sections on glass microscope slides were obtained. Slides were not baked after cutting. For each sample, the two tissue sections were scraped off of the slides using a clean razor and placed in 1.5 mL Eppendorf tubes. The tubes were briefly centrifuged to place the sample towards the bottoms or sides of the tube. RNA extraction and DNase treatment was performed using the RNeasy FFPE kit (Qiagen) according to the manufacturer’s instructions, using the Xylene protocol for the paraffin removal step and 30 µL RNase-free H2O for the elution step. RNA was initially quantified by NanoDrop. Subsequent total RNA quantification and quality assessment was performed by Bioanalyzer 2100 (Agilent Technologies). Samples were excluded from the study if >20% of the RNA fragments were >200 base pairs in length, as determined with the Bioanalyzer software. Library preparation was performed by the Genome Technology Access Center (GTAC) at Washington University. Library preparation used 150 ng of total RNA. ds-cDNA was generated using the Ovation RNA-seq FFPE system (Nugen, per manufacturer’s instructions). cDNA was blunt ended, had an A base added to the 3’ ends, and then had Illumina sequencing adapters ligated to the ends. Ligated fragments were then amplified for 12 cycles using primers incorporating unique index tags.

text: Crohn's disease

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: small intestine

characteristic: organism part

text: terminal ileum

characteristic: sampling site

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state


characteristic: ENA-CHECKLIST

text: Washington University School of Medicine

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: Crohn's disease

text: Homo sapiens

text: Homo sapiens

text: small intestine

text: terminal ileum

text: Homo sapiens

text: paraffin specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: small intestine

text: terminal ileum

text: Homo sapiens

text: paraffin specimen

characteristic: title


text: Streptococcus oralis subsp. Tigurinus

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus oralis subsp. Tigurinus

text: Streptococcus oralis subsp. tigurinus

text: Streptococcus oralis subsp. tigurinus

characteristic: subject id


text: Sphingomonas paucimobilis

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sphingomonas paucimobilis

text: Sphingomonas paucimobilis

characteristic: organism

text: Sphingomonas paucimobilis


text: Neisseria gonorrhoeae

text: SC

text: public

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: Rhodococcus equi

text: SC

text: public

text: Rhodococcus equi

text: Rhodococcus equi

text: Rhodococcus equi


text: Micrococcus luteus

text: SC

text: public

text: Micrococcus luteus

text: Micrococcus luteus

text: Micrococcus luteus


text: Kingella denitrificans

text: SC

text: public

text: Kingella denitrificans

text: Kingella denitrificans

text: Kingella denitrificans


text: Campylobacter jejuni subsp. jejuni

text: SC

text: public

text: Campylobacter jejuni subsp. jejuni

text: Campylobacter jejuni subsp. jejuni

text: Campylobacter jejuni subsp. jejuni


text: Veillonella parvula

text: SC

text: public

text: Veillonella parvula

text: Veillonella parvula

text: Veillonella parvula


text: Legionella longbeachae

text: SC

text: public

text: Legionella longbeachae

text: Legionella longbeachae

text: Legionella longbeachae


text: Legionella pneumophila

text: SC

text: public

text: Legionella pneumophila

text: Legionella pneumophila

text: Legionella pneumophila


text: Legionella pneumophila subsp. pascullei

text: SC

text: public

text: Legionella pneumophila subsp. pascullei

text: Legionella pneumophila subsp. pascullei

text: Legionella pneumophila subsp. pascullei


text: Sphingobacterium thalpophilum

text: SC

text: public

text: Sphingobacterium thalpophilum

text: Sphingobacterium thalpophilum

text: Sphingobacterium thalpophilum


text: Cedecea davisae

text: SC

text: public

text: Cedecea davisae

text: Cedecea davisae

text: Cedecea davisae


text: Providencia heimbachae

text: SC

text: public

text: Providencia heimbachae

text: Providencia heimbachae

text: Providencia heimbachae


text: Bordetella avium

text: SC

text: public

text: Bordetella avium

text: Bordetella avium

text: Bordetella avium


text: Serratia fonticola

text: SC

text: public

text: Serratia fonticola

text: Serratia fonticola

text: Serratia fonticola


text: Providencia stuartii

text: SC

text: public

text: Providencia stuartii

text: Providencia stuartii

text: Providencia stuartii


text: Morococcus cerebrosus

text: SC

text: public

text: Morococcus cerebrosus

text: Morococcus cerebrosus

text: Morococcus cerebrosus


text: Pseudomonas fragi

text: SC

text: public

text: Pseudomonas fragi

text: Pseudomonas fragi

text: Pseudomonas fragi


text: Corynebacterium pseudotuberculosis

text: SC

text: public

text: Corynebacterium pseudotuberculosis

text: Corynebacterium pseudotuberculosis

text: Corynebacterium pseudotuberculosis


text: Streptococcus constellatus subsp. viborgensis

text: SC

text: public


text: Taylorella equigenitalis

text: SC

text: public

text: Taylorella equigenitalis

text: Taylorella equigenitalis

text: Taylorella equigenitalis


text: Bacteroides thetaiotaomicron

text: SC

text: public

text: Bacteroides thetaiotaomicron

text: Bacteroides thetaiotaomicron

text: Bacteroides thetaiotaomicron


text: Mycobacterium marinum

text: SC

text: public

text: Mycobacterium marinum

text: Mycobacterium marinum

text: Mycobacterium marinum


text: Elizabethkingia meningoseptica

text: SC

text: public

text: Elizabethkingia meningoseptica

text: Elizabethkingia meningoseptica

text: Elizabethkingia meningoseptica


text: Iodobacter fluviatilis

text: SC

text: public

text: Iodobacter fluviatilis

text: Iodobacter fluviatilis

text: Iodobacter fluviatilis


text: Empedobacter brevis

text: SC

text: public

text: Empedobacter brevis

text: Empedobacter brevis

text: Empedobacter brevis


text: Erysipelothrix rhusiopathiae

text: SC

text: public

text: Erysipelothrix rhusiopathiae

text: Erysipelothrix rhusiopathiae

text: Erysipelothrix rhusiopathiae


text: Prevotella oralis

text: SC

text: public

text: Prevotella oralis

text: Prevotella oralis

text: Prevotella oralis


text: Erysipelatoclostridium ramosum

text: SC

text: public

text: Erysipelatoclostridium ramosum

text: Erysipelatoclostridium ramosum

text: Erysipelatoclostridium ramosum


text: Afipia clevelandensis

text: SC

text: public

text: Afipia clevelandensis

text: Afipia clevelandensis

text: Afipia clevelandensis


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium falciparum

text: SC

text: public

text: Plasmodium falciparum

text: Plasmodium falciparum CAMP/Malaysia

text: Plasmodium falciparum CAMP/Malaysia


CECT 8663

text: UVEG

text: public

text: CECT 8663

characteristic: collection date

text: water

characteristic: environment (biome)

text: water

characteristic: environment (feature)

text: water sample during a phytolankton bloom

characteristic: environment (material)

text: North Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Pelagimonas varians

text: Whole genome sequencing of Pelagimonas varians CECT 8663, type strain.

characteristic: project name

text: Pelagimonas varians

text: Illumina Miseq

characteristic: sequencing method

text: CECT 8663

characteristic: strain

text: water

characteristic: water environmental package


CECT 8715

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UVEG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: CECT 8715

characteristic: Submitter Id

text: sediment

text: Marine sand

text: Marine sand from the surface of the seashore around a seaweed farm at Geoje island in the South Sea, South Korea

text: South Korea

characteristic: geographic location (elevation)

text: mimarks-survey

text: Ruegeria arenilitoris

text: Whole genome sequencing of Ruegeria arenilitoris CECT 8715, type strain.

text: Ruegeria arenilitoris

text: sediment

characteristic: sediment environmental package

text: Ilumina MiSeq

text: CECT 8715

characteristic: title


text: Mycobacterium abscessus

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Mycobacterium abscessus

characteristic: common name

text: Mycobacterium abscessus

characteristic: organism

text: Mycobacterium abscessus

characteristic: subject id


CECT 8868

characteristic: ENA-CHECKLIST

text: UVEG

text: public

text: CECT 8868

characteristic: collection date

text: host associated

characteristic: environment (biome)

text: sea squirt (Halocynthia roretzi)

characteristic: environment (feature)

text: sea squirt from the South Sea at Tongyeong, South Korea

characteristic: environment (material)

text: South Korea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Octadecabacter ascidiaceicola

text: Whole genome sequencing of Octadecabacter ascidiaceicola CECT 8868, type strain.

characteristic: project name

text: Octadecabacter ascidiaceicola

text: Illumina Miseq

characteristic: sequencing method

text: CECT 8868

characteristic: strain


CECT 8898

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UVEG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CECT 8898

characteristic: Submitter Id

text: water

text: seawater

text: seawater of Malipo beach, Yellow sea, Korea.

text: South Korea

characteristic: geographic location (depth)

text: mimarks-survey

text: Maliponia aquimaris

text: Whole genome sequencing of Maliponia aquimaris CECT 8898, type strain.

text: Maliponia aquimaris

text: Illumina Miseq

text: CECT 8898

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Helmholtz Centre for Environmental Research

characteristic: collection date

text: Plot_AEW1B Betula wood BI032

characteristic: description

text: temperate coniferous forest

characteristic: environment (biome)

text: coniferous forest

characteristic: environment (feature)

text: wood

characteristic: environment (material)

text: plant-associated

characteristic: environmental package

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: uncultured soil fungus

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Tree species preferences of deadwood-inhabiting fungi in temperate forests

text: uncultured soil fungus

text: pyrosequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Helmholtz Centre for Environmental Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Plot_AEW1B Fagus sylvatica wood BU057

text: temperate coniferous forest

text: coniferous forest

text: wood

text: plant-associated

text: Germany

text: mimarks-survey

characteristic: investigation type

text: uncultured soil fungus

text: plant-associated

characteristic: project name

text: uncultured soil fungus

text: pyrosequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: collection date

text: Plot_AEW1B Pseudotsuga menziesii wood DGL037

characteristic: description

text: temperate coniferous forest

characteristic: environment (biome)

text: coniferous forest

characteristic: environment (feature)

text: wood

characteristic: environment (material)

text: plant-associated

characteristic: environmental package

text: Germany

text: mimarks-survey

text: uncultured soil fungus

text: plant-associated

text: uncultured soil fungus

text: pyrosequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Plot_AEW1B Quercus wood EI057

text: temperate coniferous forest

text: coniferous forest

text: wood

text: plant-associated

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: uncultured soil fungus

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: uncultured soil fungus

text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Plot_AEW1B Fraxinus excelsior wood ES072

text: temperate coniferous forest

text: coniferous forest

text: wood

text: plant-associated

text: Germany

text: mimarks-survey

characteristic: investigation type

text: uncultured soil fungus

text: plant-associated

characteristic: project name

text: uncultured soil fungus

text: pyrosequencing

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: collection date

text: Plot_AEW1B Picea abies wood FI075

characteristic: description

text: temperate coniferous forest

characteristic: environment (biome)

text: coniferous forest

characteristic: environment (feature)

text: wood

characteristic: environment (material)

text: plant-associated

characteristic: environmental package

text: Germany

text: mimarks-survey

text: uncultured soil fungus

text: plant-associated

text: uncultured soil fungus

text: pyrosequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Plot_AEW1B Carpinus betulus wood HBU047

text: temperate coniferous forest

text: coniferous forest

text: wood

text: plant-associated

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: uncultured soil fungus

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: uncultured soil fungus

text: pyrosequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Plot_AEW1B Pinus sylvestris wood KI022

text: temperate coniferous forest

text: coniferous forest

text: wood

text: plant-associated

text: Germany

text: mimarks-survey

characteristic: investigation type

text: uncultured soil fungus

text: plant-associated

characteristic: project name

text: uncultured soil fungus

text: pyrosequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: collection date

text: Plot_AEW1B Larix decidua wood LA081

characteristic: description

text: temperate coniferous forest

characteristic: environment (biome)

text: coniferous forest

characteristic: environment (feature)

text: wood

characteristic: environment (material)

text: plant-associated

characteristic: environmental package

text: Germany

text: mimarks-survey

text: uncultured soil fungus

text: plant-associated

text: uncultured soil fungus

text: pyrosequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Plot_AEW1B Tilia wood LI104

text: temperate coniferous forest

text: coniferous forest

text: wood

text: plant-associated

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: uncultured soil fungus

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: uncultured soil fungus

text: pyrosequencing


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Plot_AEW1B Populus wood PA043

text: temperate coniferous forest

text: coniferous forest

text: wood

text: plant-associated

text: Germany

text: mimarks-survey

characteristic: investigation type

text: uncultured soil fungus

text: plant-associated

characteristic: project name

text: uncultured soil fungus

text: pyrosequencing

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: collection date

text: Plot_AEW2B Betula wood BI059

characteristic: description

text: temperate coniferous forest

characteristic: environment (biome)

text: coniferous forest

characteristic: environment (feature)

text: wood

characteristic: environment (material)

text: plant-associated

characteristic: environmental package

text: Germany

text: mimarks-survey

text: uncultured soil fungus

text: plant-associated

text: uncultured soil fungus

text: pyrosequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Plot_AEW2B Fagus sylvatica wood BU066

text: temperate coniferous forest

text: coniferous forest

text: wood

text: plant-associated

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: uncultured soil fungus

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: uncultured soil fungus

text: pyrosequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Plot_AEW2B Pseudotsuga menziesii wood DGL021

text: temperate coniferous forest

text: coniferous forest

text: wood

text: plant-associated

text: Germany

text: mimarks-survey

characteristic: investigation type

text: uncultured soil fungus

text: plant-associated

characteristic: project name

text: uncultured soil fungus

text: pyrosequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: collection date

text: Plot_AEW2B Quercus wood EI062

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