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text: Sample from culture collection Plant and Food Research, Auckland

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text: Food - coleslaw

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-CHECKLIST

text: University of Surrey

text: public

text: New Zealand

text: Factory - Heating

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

text: public

text: New Zealand

text: Factory - Bale store

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

text: public

text: New Zealand

text: Factory - Opening

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: New Zealand

text: Factory - External Area

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: Factory - Packaging

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

text: public

characteristic: Submitter Id

characteristic: description

text: New Zealand

text: Food - smoked mussels

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

text: public

text: Isolate 2345 in Hayman MM et al, J Food Prot. 2004 Aug;67(8):1709-18. Year of isolation unknown.

text: Australia

text: Food - processed meat

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes


text: University of Surrey

text: public

characteristic: collection date

text: Isolate 2655 in Hayman MM et al, J Food Prot. 2004 Aug;67(8):1709-18. Year of isolation unknown.

text: Australia

text: Food - processed meat

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

text: public

text: Resequencing sample 16J10

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Factory - Opening

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

text: public

text: New Zealand

characteristic: isolate

text: Factory - External area

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

text: public

text: New Zealand

text: Food - mussel (final product)

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-CHECKLIST

text: University of Surrey

text: public

text: New Zealand

text: diseased

characteristic: host health state

text: Human - smoked mussel outbreak

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-FIRST-PUBLIC

text: University of Surrey

text: public

text: New Zealand

text: Food - raw mussel

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Surrey

text: public

text: New Zealand

text: Factory

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: New Zealand

text: Product

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: New Zealand

text: mussel shell (raw)

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: New Zealand

text: Factory - Balestore

text: Listeria monocytogenes

text: Listeria monocytogenes


text: University of Surrey

text: public

text: Transposon mutant from wildtype strain 15G01

characteristic: description

text: New Zealand

text: Original isolate from Factory - External Area

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes


text: QLD Health

text: public

tag: Namespace:QLD Health

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: Clinical

text: Trichophyton interdigitale

text: Trichophyton interdigitale

text: T interdigitale sequencing


characteristic: ENA-CHECKLIST

text: The Thechnion

text: public

tag: Namespace:The Thechnion

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: Wild type, Puf1 and or Puf2 deletion in the yeast response to 0.3 M CaCl2


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_d12_T-0_no_Ca_4-2-15.unique.bam


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_d12_T-45_03M_Ca_4-2-15.unique.bam


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_d12_Tend_03M_Ca_1-2-15.unique.bam


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_d12_Tend_03M_Ca_4-2-15.unique.bam


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_d12_Tend_no_Ca_1-2-15.unique.bam


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_WT_T-0_no_Ca_4-2-15.unique.bam


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_WT_T-45_03M_Ca_4-2-15.unique.bam


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_WT_Tend_03M_Ca_1-2-15.unique.bam


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_WT_Tend_03M_Ca_4-2-15.unique.bam


text: The Thechnion

text: public

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: sorted_Sample_WT_Tend_no_Ca_1-2-15.unique.bam


E-MTAB-5325:Sample 1

text: public

text: E-MTAB-5325:Sample 1

tag: Namespace:Dept. of Cell and Developmental Biology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel

text: ArrayExpress

characteristic: broker name

text: pericyte

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: wild-type mice and Nkx3.2-Cre;Tcf7l2 f/f mice were generated and their pancreatic tissues dissected at 10 weeks of age For cell isolation, dissected pancreatic tissues were digested with Collagenase P (0.4 mg/ml; Roche) and DNase (0.1 ng/ml; Sigma) diluted in HBSS for 30 minutes at 37 ̊C to obtain single cell. DAPI (1 l/ml; Sigma-Aldrich) was added to label dead cells. Live fluorescently-labeled cells were collected using FACS Aria (BD). Using PureLink RNA micro kit RNA was amplified using SMART-Seq v4 Ultra low Input RNA kit for Sequencing (Clontech), followed by Illumina sequencing library preparation

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: pancreas

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Sample 1


E-MTAB-5325:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dept. of Cell and Developmental Biology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5325:Sample 2

text: ArrayExpress

text: pericyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 2

characteristic: title


E-MTAB-5325:Sample 3

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5325:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: pericyte

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 3


E-MTAB-5325:Sample 4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5325:Sample 4

text: ArrayExpress

characteristic: broker name

text: pericyte

characteristic: cell type

text: house mouse

text: targeted mutation

characteristic: genetic modification

text: Nkx3.2-Cre;EYFP;Tcf7l2 flox/flox

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 4


E-MTAB-5325:Sample 5

text: public

text: E-MTAB-5325:Sample 5

text: ArrayExpress

text: pericyte

text: house mouse

characteristic: common name

text: targeted mutation

text: Nkx3.2-Cre;EYFP;Tcf7l2 flox/flox

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: pancreas

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Sample 5


E-MTAB-5325:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5325:Sample 6

text: ArrayExpress

text: pericyte

text: house mouse

text: targeted mutation

text: Nkx3.2-Cre;EYFP;Tcf7l2 flox/flox

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 6


E-MTAB-5325:Sample 7

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5325:Sample 7

text: ArrayExpress

text: endocrine pancreas

text: house mouse

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

text: Mus musculus

text: Sample 7

characteristic: title


E-MTAB-5325:Sample 8

text: public

characteristic: SRA accession

text: E-MTAB-5325:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: endocrine pancreas

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: islet of Langerhans

text: Mus musculus

text: Sample 8


E-MTAB-5325:Sample 9

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5325:Sample 9

text: ArrayExpress

characteristic: broker name

text: endocrine pancreas

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

text: Mus musculus

text: Sample 9


text: University Hospital Galway

text: public

tag: Namespace:University Hospital Galway

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. Enterica

text: Salmonella enterica subsp. Enterica

text: Unnamed

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-

characteristic: organism

text: Subsp. I

characteristic: title


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Infantis

text: Infantis

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Kentucky

text: Kentucky

text: Subsp. I


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Java

text: Java

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Bareilly

text: Bareilly

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Heidelberg

characteristic: organism

text: Heidelberg

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Saintpaul

text: Saintpaul

text: Subsp. I

characteristic: title


text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Virchow

text: Virchow

text: Subsp. I


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

characteristic: serovar

text: Subsp. I


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Agama

text: Agama

text: Subsp. I

characteristic: sub species


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Paratyphi A

text: Paratyphi A

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Stanley

text: Stanley

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Agona

characteristic: organism

text: Agona

text: Subsp. I


text: URMITE

text: public

text: Culturomics to increase the human bacterial repertoire

characteristic: description

text: Virgibacillus pantothenticus

text: Virgibacillus pantothenticus

characteristic: strain

text: Virgibacillus pantothenticus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

text: Virgibacillus halodenitrificans

text: Virgibacillus halodenitrificans


text: UNIVERSITE DE LIMOGES

text: public

tag: Namespace:UNIVERSITE DE LIMOGES

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: CSR junctions Smu-Salpha1 in human PBMC


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE

text: Plasmodium knowlesi

text: Plasmodium knowlesi


characteristic: External Id

text: public

tag: Namespace:SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES

text: Adult

characteristic: dev stage

text: Gallus gallus domesticus

characteristic: host scientific name

text: Ascaridia galli

text: Ascaridia galli

text: Anterior part of the worm

characteristic: tissue type

text: Beta tubulin


text: SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Adult

text: Gallus gallus domesticus

text: Ascaridia galli

text: Ascaridia galli

text: Anterior part of the worm

text: Beta tubulin


text: UFP

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Amazon

characteristic: environment (biome)

text: Reservoir

characteristic: environment (feature)

text: aquatic

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: Curua Una

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Semiconducting

characteristic: sequencing method