characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Input_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5839:ChIP-seq_UBF_MEFs_UBFfl_4HT_Rep2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Cells were fixed with 1% formaldehyde for 8 min at room temperature. Nuclei were isolated using Lysis Buffer (10 mM Tris pH 7.5, 10 mM NaCl, 3 mM MgCl2, 0.5% NP-40), transferred to Sonication Buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 2 mM EGTA, 4 mM EDTA, 0.1% SDS, 1% Triton X-100, 1% NP-40) and sonicated (Bioruptor, Diagenode) for 2 cycles of 30 sec on / 30 sec off, for 15 min at high intensity. Each immunoprecipitation (IP) was carried out on the equivalent of 50 x 106 cells in IP Buffer (150 mM NaCl, 50 mM Tris-HCl pH 7.5, 5 mM EDTA, 0.5% NP-40, 1% Triton X-100) overnight at 4°C. The antibody slurry was prepared with 50 µl A-, 50 µl G-Dynabeads and 60 µg.ml-1 antibody per IP. Immunoprecipitated chromatin was treated with RNaseA and the DNA isolated using 2% Na SDS and 2mg.ml-1 Proteinase-K. Two or more biological replicates were analyzed for each antibody. ChIP DNA samples were quality controlled by qPCR before being sent for library preparation and 50 base single-end sequencing on an Illumina HiSeq 2000 (McGill University and Génome Québec Innovation Centre).

characteristic: description

text: UBFfl/fl ERCre+/+ p53-/-

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title

type: has member


characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Input_MEFs_UBFfl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Input_MEFs_UBFwt_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFWT/WT ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_UBF_MEFs_UBFwt_4HT_Rep3

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFWT/WT ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_UBF_MEFs_UBFwt_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFWT/WT ERCre+/+ p53-/-

text: Mus musculus

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characteristic: INSDC center name

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text: E-MTAB-5839:ChIP-seq_UBF_MEFs_UBFwt_4HT_Rep2

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text: mouse embryonic fibroblast

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text: UBFWT/WT ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC first public

text: public

text: E-MTAB-5839:ChIP-seq_H2AZ_MEFs_UBFfl_Rep1

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text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC last update

text: public

text: E-MTAB-5839:ChIP-seq_H2AZ_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

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text: UZH

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characteristic: INSDC status

text: E-MTAB-5839:ChIP-seq_Rrn3_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

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text: UZH

text: public

characteristic: SRA accession

text: E-MTAB-5839:ChIP-seq_Rrn3_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_RPI_MEFs_UBFfl_Rep2

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_RPI_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Preimmune_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

characteristic: cell type

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Preimmune_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

characteristic: common name

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TTF_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

characteristic: description

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TTF_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TAF95_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TAF95_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Protocols: Cells were fixed with 1% formaldehyde for 8 min at room temperature. Nuclei were isolated using Lysis Buffer (10 mM Tris pH 7.5, 10 mM NaCl, 3 mM MgCl2, 0.5% NP-40), transferred to Sonication Buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 2 mM EGTA, 4 mM EDTA, 0.1% SDS, 1% Triton X-100, 1% NP-40) and sonicated (Bioruptor, Diagenode) for 2 cycles of 30 sec on / 30 sec off, for 15 min at high intensity. Each immunoprecipitation (IP) was carried out on the equivalent of 50 x 106 cells in IP Buffer (150 mM NaCl, 50 mM Tris-HCl pH 7.5, 5 mM EDTA, 0.5% NP-40, 1% Triton X-100) overnight at 4°C. The antibody slurry was prepared with 50 µl A-, 50 µl G-Dynabeads and 60 µg.ml-1 antibody per IP. Immunoprecipitated chromatin was treated with RNaseA and the DNA isolated using 2% Na SDS and 2mg.ml-1 Proteinase-K. Two or more biological replicates were analyzed for each antibody. ChIP DNA samples were quality controlled by qPCR before being sent for library preparation and 50 base single-end sequencing on an Illumina HiSeq 2000 (McGill University and Génome Québec Innovation Centre).

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TTF_MEFs_UBFfl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Rrn3_MEFs_UBFfl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_RPI_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TAF95_MEFs_UBFfl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

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text: UZH

characteristic: INSDC center name

text: public

text: E-MTAB-5839:ChIP-seq_TAF68_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

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text: UZH

characteristic: INSDC first public

text: public

text: E-MTAB-5839:ChIP-seq_TBP_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC last update

text: public

text: E-MTAB-5839:ChIP-seq_H3K4me2_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

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characteristic: INSDC status

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

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characteristic: SRA accession

text: E-MTAB-5839:ChIP-seq_H3K4me3_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

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characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast

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text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

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text: UZH

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text: E-MTAB-5839:ChIP-seq_H4ac_MEFs_UBFfl_Rep1

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characteristic: broker name

text: mouse embryonic fibroblast

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text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

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text: UZH

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text: E-MTAB-5839:ChIP-seq_H3K9me3_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

characteristic: cell type

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Smc1_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

characteristic: common name

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Rad21_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

characteristic: description

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Smc1_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Rad21_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Smc3_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_CTCF_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Protocols: Cells were fixed with 1% formaldehyde for 8 min at room temperature. Nuclei were isolated using Lysis Buffer (10 mM Tris pH 7.5, 10 mM NaCl, 3 mM MgCl2, 0.5% NP-40), transferred to Sonication Buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 2 mM EGTA, 4 mM EDTA, 0.1% SDS, 1% Triton X-100, 1% NP-40) and sonicated (Bioruptor, Diagenode) for 2 cycles of 30 sec on / 30 sec off, for 15 min at high intensity. Each immunoprecipitation (IP) was carried out on the equivalent of 50 x 106 cells in IP Buffer (150 mM NaCl, 50 mM Tris-HCl pH 7.5, 5 mM EDTA, 0.5% NP-40, 1% Triton X-100) overnight at 4°C. The antibody slurry was prepared with 50 µl A-, 50 µl G-Dynabeads and 60 µg.ml-1 antibody per IP. Immunoprecipitated chromatin was treated with RNaseA and the DNA isolated using 2% Na SDS and 2mg.ml-1 Proteinase-K. Two or more biological replicates were analyzed for each antibody. ChIP DNA samples were quality controlled by qPCR before being sent for library preparation and 50 base single-end sequencing on an Illumina HiSeq 2000 (McGill University and Génome Québec Innovation Centre).

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_CTCF_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Smc3_MEFs_UBFfl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Rrn3_MEFs_Rrn3fl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC center name

text: public

text: E-MTAB-5839:ChIP-seq_Rrn3_MEFs_Rrn3fl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

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text: UZH

characteristic: INSDC first public

text: public

text: E-MTAB-5839:ChIP-seq_UBF_MEFs_Rrn3fl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC last update

text: public

text: E-MTAB-5839:ChIP-seq_UBF_MEFs_Rrn3fl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

characteristic: INSDC status

text: E-MTAB-5839:ChIP-seq_H3K4me3_MEFs_UBFfl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

characteristic: SRA accession

text: E-MTAB-5839:ChIP-seq_H3K4me3_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_H3_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_H2AZac_MEFs_UBFfl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

characteristic: cell type

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_H2AZac_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

characteristic: common name

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TTF_MEFs_Rrn3fl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

characteristic: description

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TTF_MEFs_Rrn3fl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_CTCF_MEFs_UBFfl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_CTCF_MEFs_UBFfl_4HT_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TTF_MEFs_UBFfl_4HT_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TTF_MEFs_UBFfl_Rep3

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Protocols: Cells were fixed with 1% formaldehyde for 8 min at room temperature. Nuclei were isolated using Lysis Buffer (10 mM Tris pH 7.5, 10 mM NaCl, 3 mM MgCl2, 0.5% NP-40), transferred to Sonication Buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 2 mM EGTA, 4 mM EDTA, 0.1% SDS, 1% Triton X-100, 1% NP-40) and sonicated (Bioruptor, Diagenode) for 2 cycles of 30 sec on / 30 sec off, for 15 min at high intensity. Each immunoprecipitation (IP) was carried out on the equivalent of 50 x 106 cells in IP Buffer (150 mM NaCl, 50 mM Tris-HCl pH 7.5, 5 mM EDTA, 0.5% NP-40, 1% Triton X-100) overnight at 4°C. The antibody slurry was prepared with 50 µl A-, 50 µl G-Dynabeads and 60 µg.ml-1 antibody per IP. Immunoprecipitated chromatin was treated with RNaseA and the DNA isolated using 2% Na SDS and 2mg.ml-1 Proteinase-K. Two or more biological replicates were analyzed for each antibody. ChIP DNA samples were quality controlled by qPCR before being sent for library preparation and 50 base single-end sequencing on an Illumina HiSeq 2000 (McGill University and Génome Québec Innovation Centre).

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TAF68_MEFs_Rrn3fl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TAF68_MEFs_Rrn3fl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC center name

text: public

text: E-MTAB-5839:ChIP-seq_RPI_MEFs_Rrn3fl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC first public

text: public

text: E-MTAB-5839:ChIP-seq_RPI_MEFs_Rrn3fl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC last update

text: public

text: E-MTAB-5839:ChIP-seq_RPI_MEFs_Rrn3fl_4HT_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

characteristic: INSDC status

text: E-MTAB-5839:ChIP-seq_TAF68_MEFs_Rrn3fl_4HT_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

characteristic: SRA accession

text: E-MTAB-5839:ChIP-seq_RPI_MEFs_Rrn3fl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TAF68_MEFs_Rrn3fl_Rep2

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TTF_MEFs_Rrn3fl_Rep2

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TTF_MEFs_Rrn3fl_4HT_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

characteristic: cell type

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_UBF_MEFs_Rrn3fl_4HT_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

characteristic: common name

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_UBF_MEFs_Rrn3fl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

characteristic: description

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Rrn3_MEFs_Rrn3fl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_Rrn3_MEFs_Rrn3fl_4HT_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TBP_MEFs_Rrn3fl_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_TBP_MEFs_Rrn3fl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Rrn3fl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: UZH

text: public

text: E-MTAB-5839:ChIP-seq_UBF_MEFs_UBFfl_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: Protocols: Cells were fixed with 1% formaldehyde for 8 min at room temperature. Nuclei were isolated using Lysis Buffer (10 mM Tris pH 7.5, 10 mM NaCl, 3 mM MgCl2, 0.5% NP-40), transferred to Sonication Buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 2 mM EGTA, 4 mM EDTA, 0.1% SDS, 1% Triton X-100, 1% NP-40) and sonicated (Bioruptor, Diagenode) for 2 cycles of 30 sec on / 30 sec off, for 15 min at high intensity. Each immunoprecipitation (IP) was carried out on the equivalent of 50 x 106 cells in IP Buffer (150 mM NaCl, 50 mM Tris-HCl pH 7.5, 5 mM EDTA, 0.5% NP-40, 1% Triton X-100) overnight at 4°C. The antibody slurry was prepared with 50 µl A-, 50 µl G-Dynabeads and 60 µg.ml-1 antibody per IP. Immunoprecipitated chromatin was treated with RNaseA and the DNA isolated using 2% Na SDS and 2mg.ml-1 Proteinase-K. Two or more biological replicates were analyzed for each antibody. ChIP DNA samples were quality controlled by qPCR before being sent for library preparation and 50 base single-end sequencing on an Illumina HiSeq 2000 (McGill University and Génome Québec Innovation Centre).

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: UZH

text: public

text: E-MTAB-5839:Dnase-seq_MEFs_UBFfl_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: UZH

text: public

text: E-MTAB-5839:Dnase-seq_MEFs_UBFfl_4HT_Rep2

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC center name

text: public

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFfl/fl ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UZH

characteristic: INSDC first public

text: public

text: E-MTAB-5839:Dnase-seq_MEFs_UBFwt_4HT_Rep1

text: ArrayExpress

text: mouse embryonic fibroblast

text: house mouse

text: UBFWT/WT ERCre+/+ p53-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF BRITISH COLUMBIA, DEPT BOTANY

characteristic: collection date

text: giant kelp

text: coastal ocean

characteristic: environment (biome)

text: kelp forest

characteristic: environment (feature)

text: algae

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

text: 51 55.226

unit: DD

characteristic: geographic location (latitude)

text: 128 27.571

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Macrocystis pyrifera

text: Macrocystis bacterial diversity

characteristic: project name

text: Macrocystis pyrifera

text: Illumina

characteristic: sequencing method

text: Macrocystis bacterial communities


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BRITISH COLUMBIA, DEPT BOTANY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: giant kelp

characteristic: common name

text: coastal ocean

text: kelp forest

text: algae

text: Canada

text: 51 55.226

text: 128 27.571

text: host-associated

text: mimarks-survey

text: Macrocystis pyrifera

characteristic: organism

text: Macrocystis bacterial diversity

text: Macrocystis pyrifera

text: Illumina

text: Macrocystis bacterial communities

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: giant kelp

text: coastal ocean

characteristic: environment (biome)

text: kelp forest

characteristic: environment (feature)

text: algae

text: Canada

unit: m

characteristic: geographic location (depth)

text: 51 55.226

text: 128 27.571

text: mimarks-survey

text: Macrocystis pyrifera

text: Macrocystis bacterial communities

text: Macrocystis pyrifera

text: Illumina

text: Macrocystis water bacterial communities

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: giant kelp

text: coastal ocean

text: kelp forest

text: algae

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

text: 52 04.962

characteristic: geographic location (latitude)

text: 128 21.883

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Macrocystis pyrifera

text: Macrocystis bacterial diversity

characteristic: project name

text: Macrocystis pyrifera

text: Illumina

characteristic: sequencing method

text: Macrocystis bacterial communities


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: giant kelp

characteristic: common name

text: coastal ocean

text: kelp forest

text: algae

text: Canada

text: 52 04.962

text: 128 21.883

text: mimarks-survey

text: Macrocystis pyrifera

characteristic: organism

text: Macrocystis bacterial diversity

text: Macrocystis pyrifera

text: Illumina

text: Macrocystis water bacterial communities

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: collection date

text: giant kelp

text: coastal ocean

characteristic: environment (biome)

text: kelp forest

characteristic: environment (feature)

text: algae

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

text: 51 48.343

text: 128 15.479

text: host-associated

text: mimarks-survey

text: Macrocystis pyrifera

text: Macrocystis bacterial diversity

text: Macrocystis pyrifera

text: Illumina

text: Macrocystis bacterial communities


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: giant kelp

text: coastal ocean

text: kelp forest

text: algae

text: Canada

characteristic: geographic location (depth)

text: 51 48.343

characteristic: geographic location (latitude)

text: 128 15.479

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Macrocystis pyrifera

text: Macrocystis bacterial diversity

characteristic: project name

text: Macrocystis pyrifera

text: Illumina

characteristic: sequencing method

text: Macrocystis water bacterial communities

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

text: SDAU, Sardarkrushinagar

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:SDAU, Sardarkrushinagar

characteristic: Submitter Id

text: Cage system Flock A

characteristic: description

text: Host-associated

text: Trachea

text: Lavage

text: India

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: bird metagenome

characteristic: organism

text: Respiratory Disease Complex

text: bird metagenome

text: Semiconducting

text: RDC

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SDAU, Sardarkrushinagar

characteristic: INSDC last update

text: public

characteristic: collection date

text: deep litter system flock D healthy

text: host associated

characteristic: environment (biome)

text: respiratory tract

characteristic: environment (feature)

text: TBA (Tracheo-Broncho-Alveolar) lavage

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: bird metagenome

text: Respiratory disease complex

text: bird metagenome

text: semiconduction

text: RDC


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Computational Biology and Microbial Ecology

text: spectacled bear

characteristic: common name

text: Colombia

text: Guatavita

characteristic: geographic location (region and locality)

text: stool

characteristic: isolation source

text: Tremarctos ornatus

text: Tremarctos ornatus


text: Computational Biology and Microbial Ecology

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: spectacled bear

characteristic: description

text: Colombia

text: Guatavita

text: stool

text: Tremarctos ornatus

characteristic: organism

text: Tremarctos ornatus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: spectacled bear

text: Colombia

text: Mesitas

text: stool

text: Tremarctos ornatus

text: Tremarctos ornatus

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: spectacled bear

text: Colombia

characteristic: geographic location (country and/or sea)

text: Mesitas

text: stool

text: Tremarctos ornatus

text: Tremarctos ornatus

text: male


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: spectacled bear

text: fecal sample of wild andean bear

text: Colombia

text: Guatavita

text: stool

text: Tremarctos ornatus

text: Tremarctos ornatus


text: public

tag: Namespace:WASHINGTON UNIVERSITY  SCHOOL OF MEDICINE

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Abx


text: WASHINGTON UNIVERSITY SCHOOL OF MEDICINE

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Abx


text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: TCR


text: public

tag: Namespace:Heinrich Pette Institute, Leibniz Institute for Experimental Virology

characteristic: cell line

text: B cell

characteristic: cell type

text: human

text: huNSG-derived cell line E4-3, replicate 1 of 3

text: positive

characteristic: ebv status

text: negative

text: Homo sapiens

characteristic: replicate

text: Homo sapiens

text: huNSG E4-3_1


text: Heinrich Pette Institute, Leibniz Institute for Experimental Virology

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: B cell

text: human

text: huNSG-derived cell line E4-3, replicate 2 of 3

characteristic: description

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: huNSG E4-3_2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: B cell

text: human

text: huNSG-derived cell line E4-3, replicate 3 of 3

text: positive

text: negative

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: huNSG E4-3_3


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

text: B cell

text: human

text: huNSG-derived cell line E4-9, replicate 1 of 3

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: huNSG E4-9_1

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: B cell

text: human

text: huNSG-derived cell line E4-9, replicate 2 of 3

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: huNSG E4-9_2


text: public

characteristic: cell line

text: B cell

text: human

characteristic: common name

text: huNSG-derived cell line E4-9, replicate 3 of 3

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: huNSG E4-9_3


text: public

text: B cell

characteristic: cell type

text: human

text: huNSG-derived cell line EK4-11, replicate 1 of 3

text: positive

characteristic: ebv status

text: positive

text: Homo sapiens

text: Homo sapiens

text: huNSG EK4-11_1


text: public

characteristic: INSDC status

text: B cell

text: human

text: huNSG-derived cell line EK4-11, replicate 2 of 3

text: positive

text: positive

text: Homo sapiens

characteristic: replicate

text: Homo sapiens

text: huNSG EK4-11_2


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: B cell

text: human

text: huNSG-derived cell line EK4-11, replicate 3 of 3

text: positive

text: positive

text: Homo sapiens

text: Homo sapiens

text: huNSG EK4-11_3


characteristic: ENA-FIRST-PUBLIC

text: public

text: B cell

text: human

text: huNSG-derived cell line EK3-11, replicate 1 of 3

characteristic: description

text: positive

text: positive

text: Homo sapiens

text: Homo sapiens

text: huNSG EK3-11_1


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: B cell

text: human

text: huNSG-derived cell line EK3-11, replicate 2 of 3

text: positive

text: positive

text: Homo sapiens

text: Homo sapiens

text: huNSG EK3-11_2


characteristic: ENA-CHECKLIST

text: public

text: B cell

text: human

text: huNSG-derived cell line EK3-11, replicate 3 of 3

text: positive

text: positive

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: huNSG EK3-11_3


characteristic: INSDC last update

text: public

text: B cell

text: human

text: huNSG-derived cell line EK3-13, replicate 1 of 2

text: positive

text: positive

text: Homo sapiens

text: Homo sapiens

text: huNSG EK3-13_1

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: B cell

text: human

text: huNSG-derived cell line EK3-13, replicate 2 of 2

text: positive

text: positive

text: Homo sapiens

text: Homo sapiens

text: huNSG EK3-13_3


text: public

characteristic: cell line

text: B cell

text: human

characteristic: common name

text: lymphoblastoid cell line LCL1, replicate 1 of 3

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: LCL LCL1_1


text: public

text: B cell

characteristic: cell type

text: human

text: lymphoblastoid cell line LCL1, replicate 2 of 3

text: positive

characteristic: ebv status

text: negative

text: Homo sapiens

text: Homo sapiens

text: LCL LCL1_2


text: public

characteristic: INSDC status

text: B cell

text: human

text: lymphoblastoid cell line LCL1, replicate 3 of 3

text: positive

text: negative

text: Homo sapiens

characteristic: replicate

text: Homo sapiens

text: LCL LCL1_3


text: Heinrich Pette Institute, Leibniz Institute for Experimental Virology

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: B cell

text: human

text: lymphoblastoid cell line LCL2, replicate 1 of 3

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: LCL LCL2_1


characteristic: ENA-FIRST-PUBLIC

text: public

text: B cell

text: human

text: lymphoblastoid cell line LCL2, replicate 2 of 3

characteristic: description

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: LCL LCL2_2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: B cell

text: human

text: lymphoblastoid cell line LCL2, replicate 3 of 3

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: LCL LCL2_3


characteristic: ENA-CHECKLIST

text: public

text: B cell

text: human

text: lymphoblastoid cell line LCL3, replicate 1 of 3

text: positive

text: negative

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: LCL LCL3_1


characteristic: INSDC last update

text: public

text: B cell

text: human

text: lymphoblastoid cell line LCL3, replicate 2 of 3

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: LCL LCL3_2

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: B cell

text: human

text: lymphoblastoid cell line LCL3, replicate 3 of 3

text: positive

text: negative

text: Homo sapiens

text: Homo sapiens

text: LCL LCL3_3


text: public

characteristic: cell line

text: B cell

text: human

characteristic: common name

text: primary effusion lymphoma-derived cell line BCBL1, replicate 1 of 1

text: negative

text: positive

text: Homo sapiens

text: Homo sapiens

text: PEL BCBL1


text: public

text: B cell

characteristic: cell type

text: human

text: primary effusion lymphoma-derived cell line AP2, replicate 1 of 1

text: positive

characteristic: ebv status

text: positive

text: Homo sapiens

text: Homo sapiens

text: PEL AP2


text: public

characteristic: INSDC status

text: B cell

text: human

text: primary effusion lymphoma-derived cell line AP3, replicate 1 of 1

text: negative

text: positive

text: Homo sapiens

characteristic: replicate

text: Homo sapiens

text: PEL AP3


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: B cell

text: human

text: primary effusion lymphoma-derived cell line AP5, replicate 1 of 1

text: positive

text: positive

text: Homo sapiens

text: Homo sapiens

text: PEL AP5


characteristic: ENA-FIRST-PUBLIC

text: public

text: B cell

text: human

text: primary effusion lymphoma-derived cell line HBL6, replicate 1 of 1

characteristic: description

text: positive

text: positive

text: Homo sapiens

text: Homo sapiens

text: PEL HBL6


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

text: digester

characteristic: environment biome

characteristic: environment feature

characteristic: environment material

text: Denmark

characteristic: geographic location

characteristic: latitude

characteristic: longitude

text: metagenome

text: sludge

characteristic: sample type

text: metagenome


characteristic: ENA-CHECKLIST

text: KU Leuven

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:KU Leuven

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: KU Leuven

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:UPPSALA UNIVERSITY, DEPARTMENT OF ECOLOGY AND GENE

text: zebrafish

text: Danio rerio

text: Danio rerio

text: male

characteristic: sex

text: AB

characteristic: strain

text: Zebrafish paternal finclip, male 31


text: UPPSALA UNIVERSITY, DEPARTMENT OF ECOLOGY AND GENE

text: public

text: sperm

characteristic: cell type

text: zebrafish

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish sperm pool, unselected, male 31


text: public

text: sperm

text: zebrafish

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish sperm pool, center, male 31


text: public

text: sperm

text: zebrafish

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish sperm pool, outer, male 31


text: public

text: sperm

text: zebrafish

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish fin clip, male 32


text: public

text: sperm

text: zebrafish

text: Unidentified technical error

characteristic: description

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish sperm pool, unselected, male 32


characteristic: ENA-CHECKLIST

text: public

text: sperm

text: zebrafish

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish sperm pool, center, male 32


characteristic: INSDC center name

text: public

text: sperm

text: zebrafish

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish sperm pool, outer, male 32


characteristic: INSDC first public

text: public

text: sperm

text: zebrafish

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish fin clip


characteristic: INSDC last update

text: public

text: sperm

text: zebrafish

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish sperm pool, unselected, male 34


text: public

text: sperm

text: zebrafish

characteristic: common name

text: Danio rerio

text: Danio rerio

text: male

text: AB

text: Zebrafish sperm pool, center, male 34


text: public

text: sperm

text: zebrafish

text: Danio rerio

characteristic: organism

text: Danio rerio

text: male

text: AB

text: Zebrafish sperm pool, outer, male 34


text: WASHINGTON UNIVERSITY SCHOOL OF MEDICINE

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Colitis

characteristic: title


text: synthetic construct

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: synthetic construct

text: synthetic construct

text: synthetic construct

characteristic: subject id


text: Pseudomonas aeruginosa PAO1

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: Pseudomonas putida KT2440

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Pseudomonas putida KT2440

text: Pseudomonas putida KT2440

text: Pseudomonas putida KT2440


text: Allen

text: public

text: This sample includes the sequencing data of the negative PCR control (PCR performed with no addition of isolated genetic material; Nucleic acid free water was used as template).

text: metagenomes

text: metagenomes

text: Neg-control


text: public

tag: Namespace:Heilongjiang River Fisheries Research Institute of Chinese Academy of Fishery Sciences

text: taimen

text: Thirty-two wild individuals collected from Hutou section of Wusuli River (E133˚40´16″, N45˚58´55˝)

text: Hucho taimen

text: Hucho taimen

text: samples collected from wild stocks


text: Cryptococcus neoformans

text: SC

text: public

text: Cryptococcus neoformans

text: Cryptococcus neoformans

text: Cryptococcus neoformans


text: Evolutionary Biology Centre

text: public

tag: Namespace:Evolutionary Biology Centre

text: Tristis, allopatry

text: Phylloscopus collybita tristis

text: Phylloscopus collybita tristis


text: Streptococcus sp. 'group B'

text: SC

text: public

text: Streptococcus sp. 'group B'

text: Streptococcus sp. 'group B'

text: Streptococcus sp. 'group B'


text: FRAUNHOFER IGB

text: public

tag: Namespace:FRAUNHOFER IGB

characteristic: collection date

text: starting inoculum

text: Germany

characteristic: geographic location (country and/or sea)

text: metatranscriptome

characteristic: investigation type

text: 17l biogas plant

characteristic: name of the sampling site

text: metagenome

text: metagenome

text: anaerobic maize digestion

characteristic: sewage type

text: biogas metatranscriptome


characteristic: ENA-CHECKLIST

text: FRAUNHOFER IGB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: maize silage digestion

characteristic: description

text: Germany

text: metatranscriptome

text: 17l biogas plant

text: metagenome

text: metagenome

text: anaerobic maize digestion

text: biogas metatranscriptome


characteristic: ENA-FIRST-PUBLIC

text: Evolutionary Biology Centre

text: public

text: Abeitinus, sympatry

text: Phylloscopus collybita abietinus

characteristic: organism

text: Phylloscopus collybita abietinus

characteristic: title


text: Evolutionary Biology Centre

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Tristis, sympatry

text: Phylloscopus collybita tristis

text: Phylloscopus collybita tristis


characteristic: ENA-LAST-UPDATE

text: FRAUNHOFER IGB

text: public

characteristic: Submitter Id

text: maize silage digestion

text: Germany

text: metagenome

text: 17l biogas plant

text: metagenome

text: metagenome

text: anaerobic maize digestion

text: biogas metagenome


characteristic: External Id

text: FRAUNHOFER IGB

text: public

characteristic: collection date

text: slurry control

text: Germany

text: metagenome

text: 17l biogas plant

text: metagenome

text: metagenome

text: anaerobic maize digestion

text: biogas metagenome


text: University Hospital Galway

text: public

tag: Namespace:University Hospital Galway

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-CHECKLIST

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-

text: Subsp. I


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Newport

characteristic: organism

text: Newport

text: Subsp. I

characteristic: title


characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

text: public

characteristic: Submitter Id

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Napoli

text: Napoli

text: Subsp. I


text: public

tag: Namespace:University of Montpellier, Faculty of Medicine, Dept of Parasitology-Mycology

text: Leishmania centromeres could not be identified by classical methods including telomere-associated chromosome fragmentation, and position mapping of topoisomerase II binding sites via etoposide-mediated cleavage. Hints for the centromere quest in Leishmania appeared recently with the description of unconventional kinetoplastid kinetochore proteins (KKT) in T. brucei (Akiyoshi and Gull Cell 2015). Chromatin immunoprecipitation coupled to high-throughput sequencing (ChIP-Seq) of L. major KKT1 (LmKKT1) clearly identified one major peak per chromosome. Each peak covers a region of 4 ±2 kb in size. No specific sequence feature could be found, but two grossly conserved motifs were found for 14/36 chromosomes; and a higher density of retroposon was observed in 27/36 centromeres. The identification of centromeres and of a kinetochore component of Leishmania chromosomes provide a tool to further study the composition of this unusual complex this may result in a better understanding of the molecular events leading to chromosomal segregation in this parasite and shed light on the hypothesis that 'permissive' segregation plays a role in mosaic aneuploidy.

characteristic: description

text: Leishmania major

text: Leishmania major

text: ChIP-Seq of KKT1


characteristic: ENA-CHECKLIST

text: University of Montpellier, Faculty of Medicine, Dept of Parasitology-Mycology

text: public

text: Leishmania major

text: Leishmania major

text: Input of KKT1


text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF BERGEN

text: September 16 Station 3 sampled at 10m depth and filtered through 90microm filters to represent starting conditions

text: Fjord

characteristic: environment (biome)

text: DCM

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Greenland

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Young Sound

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 519F, 806R

characteristic: pcr primers

text: Fjord transect

characteristic: project name

unit: g

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: September 25 Station 3 sampled after 8 days of incubation; initial fjord water filtered through 90microm filters and 0.4 snails added per liter

characteristic: description

text: Fjord

text: DCM

text: Water

text: Greenland

characteristic: geographic location (country and/or sea)

text: Young Sound

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 519F, 806R

text: Fjord transect

text: unidentified prokaryotic organism

text: MiSeq

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

text: September 25 Station 3 sampled after 8 days of incubation; initial fjord water filtered through 90microm filters and 1 copepod added per liter

text: Fjord

characteristic: environment (biome)

text: DCM

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Greenland

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Young Sound

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 519F, 806R

characteristic: pcr primers

text: Fjord transect

characteristic: project name

text: unidentified prokaryotic organism

text: MiSeq

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: September 25 Station 3 sampled after 8 days of incubation; initial fjord water filtered through 0.8microm filters

characteristic: description

text: Fjord

text: DCM

text: Water

text: Greenland

text: Young Sound

text: metagenome

text: unidentified prokaryotic organism

text: 519F, 806R

text: Fjord transect

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

text: September 25 Station 3 sampled after 8 days of incubation; initial fjord water filtered through 90microm filters

text: River

characteristic: environment (biome)

text: DCM

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Greenland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Young Sound

characteristic: geographic location (region and locality)

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 519F, 806R

text: Fjord transect

text: unidentified prokaryotic organism

text: MiSeq

characteristic: title

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: September 25 Station 3 sampled after 8 days of incubation; initial fjord water filtered through 10microm filters

characteristic: description

text: River

text: DCM

text: Water

text: Greenland

text: Young Sound

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 519F, 806R

characteristic: pcr primers

text: Fjord transect

characteristic: project name

text: unidentified prokaryotic organism

text: MiSeq

text: water


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

text: September 25 Station 3 sampled after 8 days of incubation; initial fjord water filtered through 3microm filters

text: Fjord

characteristic: environment (biome)

text: DCM

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Greenland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Young Sound

text: metagenome

text: unidentified prokaryotic organism

text: 519F, 806R

text: Fjord transect

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: July 13 Station 3 sampled at 12m depth and filtered through 90microm filters to represent starting conditions

characteristic: description

text: Fjord

text: DCM

text: Water

text: Greenland

text: Young Sound

characteristic: geographic location (region and locality)

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 519F, 806R

text: Fjord transect

text: unidentified prokaryotic organism

text: MiSeq

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

text: July 19 Station 3 sampled after 7 days of incubation; initial fjord water filtered through 3microm filters

text: River

characteristic: environment (biome)

text: DCM

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Greenland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Young Sound

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 519F, 806R

characteristic: pcr primers

text: Fjord transect

characteristic: project name

text: unidentified prokaryotic organism

text: MiSeq

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: July 19 Station 3 sampled after 7 days of incubation; initial fjord water filtered through 0.8microm filters

characteristic: description

text: Fjord

text: DCM

text: Water

text: Greenland

text: Young Sound

text: metagenome

text: unidentified prokaryotic organism

text: 519F, 806R

text: Fjord transect

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

text: July 19 Station 3 sampled after 7 days of incubation; initial fjord water filtered through 10microm filters

text: Fjord

characteristic: environment (biome)

text: DCM

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Greenland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Young Sound

characteristic: geographic location (region and locality)

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 519F, 806R

text: Fjord transect

text: unidentified prokaryotic organism

text: MiSeq

characteristic: title

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: July 19 Station 3 sampled after 7 days of incubation; initial fjord water filtered through 90microm filters

characteristic: description

text: Fjord

text: DCM

text: Water

text: Greenland

text: Young Sound

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 519F, 806R

characteristic: pcr primers

text: Fjord transect

characteristic: project name

text: unidentified prokaryotic organism

text: MiSeq

text: water


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

text: July 29 Station 3 sampled after 9 days of incubation; initial fjord water filtered through 90microm and 1 copepod added per liter

text: Fjord

characteristic: environment (biome)

text: DCM

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Greenland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Young Sound

text: metagenome

text: unidentified prokaryotic organism

text: 519F, 806R

text: Fjord transect

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: July 29 Station 3 sampled after 9 days of incubation; initial fjord water filtered through 90microm filters

characteristic: description

text: Fjord

text: DCM

text: Water

text: Greenland

text: Young Sound

characteristic: geographic location (region and locality)

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 519F, 806R

text: Fjord transect

text: unidentified prokaryotic organism

text: MiSeq

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

text: July 29 Station 3 sampled after 9 days of incubation; initial fjord water filtered through 3microm filters

text: Fjord

characteristic: environment (biome)

text: DCM

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Greenland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Young Sound

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 519F, 806R

characteristic: pcr primers

text: Fjord transect

characteristic: project name

text: unidentified prokaryotic organism

text: MiSeq

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: July 29 Station 3 sampled after 9 days of incubation; initial fjord water filtered through 10microm filters

characteristic: description

text: Fjord

text: DCM

text: Water

text: Greenland

text: Young Sound

text: metagenome

text: unidentified prokaryotic organism

text: 519F, 806R

text: Fjord transect

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

text: public

text: July 29 Station 3 sampled after 9 days of incubation; initial fjord water filtered through 0.8microm filters

text: Fjord

characteristic: environment (biome)

text: DCM

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Greenland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Young Sound

characteristic: geographic location (region and locality)

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 519F, 806R

text: Fjord transect

text: unidentified prokaryotic organism

text: MiSeq

characteristic: title

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Antwerp, Belgium

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Antwerp, Belgium

characteristic: Submitter Id

characteristic: collection date

text: Belgium

text: not provided

characteristic: host health state

text: hamster

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source

text: Helicobacter mesocricetorum

text: Helicobacter mesocricetorum

text: Helicobacter mesocricetorum


characteristic: ENA-CHECKLIST

text: University of Antwerp, Belgium

characteristic: INSDC center name

text: public

text: Belgium

characteristic: geographic location (country and/or sea)

text: not provided

text: tern

text: feces

text: Helicobacter pametensis

text: Helicobacter pametensis

text: Helicobacter pametensis


text: University of Antwerp, Belgium

text: public

text: USA

text: diseased

text: human

text: feces

text: Helicobacter rappini

characteristic: organism

text: Helicobacter rappini

text: Helicobacter rappini

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Antwerp, Belgium

text: public

text: USA

text: not provided

text: human

text: feces

text: Helicobacter canadensis

text: Helicobacter canadensis

text: Helicobacter canadensis


characteristic: External Id

text: University of Antwerp, Belgium

characteristic: INSDC first public

text: public

text: USA

text: not provided

text: Syrian hamster

text: gastro-intestinal tract

text: Helicobacter aurati

text: Helicobacter aurati

text: Helicobacter aurati


text: University of Antwerp, Belgium

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: USA

text: not provided

text: Opposum Didelphis Virginia

text: feces

text: Helicobacter marmotae

text: Helicobacter marmotae

text: Helicobacter marmotae


text: University of Antwerp, Belgium

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Belgium

text: healthy

text: horse

text: feces

text: Helicobacter equorum

text: Helicobacter equorum

text: Helicobacter equorum


text: public

tag: Namespace:ZHEJIANG UNIVERSITY, HANGZHOU, P. R. CHINA

characteristic: collection date

text: tongue coat

characteristic: environment (biome)

text: tongue coat

characteristic: environment (feature)

text: tongue coat

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

characteristic: humam oral environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: tongue coat of LC patients

characteristic: project name

text: metagenome

text: Illumina miseq sequencer

characteristic: sequencing method

text: tongue coat of LC patients


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ZHEJIANG UNIVERSITY, HANGZHOU, P. R. CHINA

characteristic: INSDC center name

text: public

text: tongue coat

text: tongue coat

text: tongue coat

text: China

characteristic: geographic location (country and/or sea)

text: human-oral

text: metagenome

text: metagenome

characteristic: organism

text: tongue coat of LC patients

text: metagenome

text: Illumina miseq sequencer

text: tongue coat of LC patients

characteristic: title


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: Salmonella enterica subsp. enterica serovar Enteritidis

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Typhimurium

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Dublin

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Gallinarum

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Choleraesuis

text: SC

text: public


text: Stanford University

text: public

tag: Namespace:Stanford University

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: haploid cell

characteristic: cell type

text: human

text: Protocols: HAP1 cells were derived from the near-haploid chronic myeloid leukaemia cell line KBM7 as described (Carette et al., 2011). HAP1 cells were cultured in IMDM supplemented with 10% FBS, penicillin-streptomycin and L-glutamine. Cells were incubated at 37°C in 5% CO2 and grown to 80-90% confluence before harvesting total RNA Total RNA from 5 million cells was extracted using Qiagen RNeasy plus mini kit (74134). 1 μg of total RNA was subjected to library synthesis using the TruSeq RNA-Seq kit in technical replicate (e.g. two libraries were made from each RNA sample). 1 μg of total RNA was enriched for Poly-A mRNA using oligo dT-selection and reverse transcribed to cDNA. The cDNA was ligated with Illumina indexes. RNA libraries were prepared for sequencing using standard Illumina protocols.

characteristic: description

text: chronic myelogenous leukemia

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Stanford University

characteristic: INSDC center name

text: public

text: ArrayExpress

text: haploid cell

text: human

text: chronic myelogenous leukemia

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: B


characteristic: External Id

text: Stanford University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: haploid cell

text: human

text: chronic myelogenous leukemia

text: USP14 knockout

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: C

characteristic: title


text: Stanford University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: haploid cell

text: human

characteristic: common name

text: chronic myelogenous leukemia

text: USP14 knockout

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: D


name: E-MTAB-5866:Negative regulators of FN lambda signaling

text: STANFORD UNIVERSITY

text: public

tag: Namespace:STANFORD UNIVERSITY

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: haploid cell

characteristic: cell type

text: human

text: Protocols: HAP1 cells were derived from the near-haploid chronic myeloid leukaemia cell line KBM7 as described earlier (Carette et al., 2011). HAP1 cells were cultured in IMDM supplemented with 10% FBS, penicillin-streptomycin and L-glutamine. Cells were mutagenized using a RFP gene-trap virus as described in the article with PMCID number: PMC3111863 Negative regulators of FN lambda signaling: HAP1 cells were transduced with the vector 5xISRE-eGFP to create an ISG reporter cell line. The reporter cell line was sensitized to IFNλ by overexpressing IFNLR1 (IL28RA). These cells were then sub-cloned to obtain a clonal population prior to mutagenesis. An RFP-gene trap virus was used to create a mutagenized HAP1 reporter library. To sort for cells that displayed constitutive activation of the reporter in the absence of IFN, 100 million mutagenized, unstimulated, cells were sorted for the top 5% GFP positive by FACS and grown over a period of 4 days. Cells were then re-sorted for the top 5% GFP positive to enrich for cells displaying constitutive reporter activation. Thirty million cells of the selected population were used for genomic DNA isolation. Genomic DNA was harvested from 30 million cells using the QIAamp DNA mini kit (Qiagen 51304) Sequencing libraries of genomic regions flanking gene-trap integration sites in control and sorted cell populations were prepared using a linear amplification (LAM) PCR-mediated method described in the article with PMCID number: PMC3111863

text: chronic myelogenous leukemia

text: ISRE-GFP reporter and IL28RA overexpression

text: Homo sapiens

text: Homo sapiens

text: GFP-positive

characteristic: phenotype

text: Homo sapiens


name: E-MTAB-5866:Positive regulators of IFN lambda signaling

characteristic: ENA-CHECKLIST

text: STANFORD UNIVERSITY

text: public

text: ArrayExpress

text: haploid cell

text: human

text: Protocols: HAP1 cells were derived from the near-haploid chronic myeloid leukaemia cell line KBM7 as described earlier (Carette et al., 2011). HAP1 cells were cultured in IMDM supplemented with 10% FBS, penicillin-streptomycin and L-glutamine. Cells were mutagenized using a RFP gene-trap virus as described in the article with PMCID number: PMC3111863 Positive regulators of IFN lambda signaling: HAP1 cells were transduced with the vector 5xISRE-eGFP to create an ISG reporter cell line. The reporter cell line was sensitized to IFNλ by overexpressing IFNLR1 (IL28RA). These cells were then sub-cloned to obtain a clonal population prior to mutagenesis. An RFP-gene trap virus was used to create a mutagenized HAP1 reporter library. 100 million mutagenized cells were stimulated with 10 IU/ml IFNλ2. After 24 h, stimulated cells were sorted for GFP-negative cells (approximately 5% of the population) and grown for 3 days. The cells were stimulated again with 10 IU/ml IFNλ2 for 24 h and sorted on GFP-negative cells to enrich for cells that no longer responded to IFN treatment. Thirty million cells of the selected population were used for genomic DNA isolation. Genomic DNA was harvested from 30 million cells using the QIAamp DNA mini kit (Qiagen 51304) Sequencing libraries of genomic regions flanking gene-trap integration sites in control and sorted cell populations were prepared using a linear amplification (LAM) PCR-mediated method described in the article with PMCID number: PMC3111863

characteristic: description

text: chronic myelogenous leukemia

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: GFP-negative

text: Homo sapiens


E-MTAB-5866:Unselected control

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STANFORD UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-5866:Unselected control

text: ArrayExpress

text: haploid cell

text: human

text: Protocols: HAP1 cells were derived from the near-haploid chronic myeloid leukaemia cell line KBM7 as described earlier (Carette et al., 2011). HAP1 cells were cultured in IMDM supplemented with 10% FBS, penicillin-streptomycin and L-glutamine. Cells were mutagenized using a RFP gene-trap virus as described in the article with PMCID number: PMC3111863 Control: HAP1 cells were transduced with the vector 5xISRE-eGFP to create an ISG reporter cell line. The reporter cell line was sensitized to IFNλ by overexpressing IFNLR1 (IL28RA). These cells were then sub-cloned to obtain a clonal population prior to mutagenesis. An RFP-gene trap virus was used to create a mutagenized HAP1 reporter library. Thirty million cells were used for genomic DNA isolation to create the unselected control library for sequencing. Genomic DNA was harvested from 30 million cells using the QIAamp DNA mini kit (Qiagen 51304) Sequencing libraries of genomic regions flanking gene-trap integration sites in control and sorted cell populations were prepared using a linear amplification (LAM) PCR-mediated method described in the article with PMCID number: PMC3111863

text: chronic myelogenous leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: unsorted

text: Homo sapiens

text: Unselected control


characteristic: External Id

text: Stanford University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: haploid cell

text: human

text: Protocols: HAP1 cells were derived from the near-haploid chronic myeloid leukaemia cell line KBM7 as described (Carette et al., 2011). HAP1 cells were cultured in IMDM supplemented with 10% FBS, penicillin-streptomycin and L-glutamine. Cells were incubated at 37°C in 5% CO2 and grown to 80-90% confluence before harvesting total RNA. Total RNA from 5 million cells was extracted using Qiagen RNeasy plus mini kit (74134). 1 μg of total RNA was subjected to library synthesis using the TruSeq RNA-Seq kit in technical replicate (e.g. two libraries were made from each RNA sample). 1 μg of total RNA was enriched for Poly-A mRNA using oligo dT-selection and reverse transcribed to cDNA. The cDNA was ligated with Illumina indexes. RNA libraries were prepared for sequencing using standard Illumina protocols.

text: chronic myelogenous leukemia

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: A

characteristic: title


text: Stanford University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: haploid cell

text: human

characteristic: common name

text: chronic myelogenous leukemia

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: B


text: Stanford University

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: haploid cell

characteristic: cell type

text: human

text: chronic myelogenous leukemia

text: DDX6 knockout

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: C


characteristic: ENA-CHECKLIST

text: Stanford University

text: public

text: ArrayExpress

text: haploid cell

text: human

characteristic: description

text: chronic myelogenous leukemia

characteristic: disease

text: DDX6 knockout

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: D


BIN 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIMIB

text: public

text: BIN 6

characteristic: collection date

text: aquatic biome

characteristic: environment (biome)

text: cold environment

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: Binning cryoconite metagenome

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Binning cryoconite metagenome


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Centrum Medyczne Ksztalcenia Podyplomowego

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: sepsis

characteristic: description

text: heart

characteristic: organ

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: time

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Centrum Medyczne Ksztalcenia Podyplomowego

text: public

text: house mouse

text: sepsis

text: heart

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: control

text: heart

text: Mus musculus

text: Mus musculus


pool assembly

text: FRAUNHOFER IGB

text: public

text: pool assembly

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: investigation type

text: 17l biogas plant

characteristic: name of the sampling site

text: metagenome

text: metagenome

text: anaerobic maize digestion

characteristic: sewage type

text: sample pool metagenome assembly


characteristic: ENA-CHECKLIST

characteristic: External Id

text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:INSTITUT PASTEUR

text: Instituto Nacional de Enfermedades Neoplasicas, Lima Peru

characteristic: collecting institution

text: Eloy Ruiz

characteristic: collector name

text: Peru

text: 12° 02' 43''

characteristic: geographic location (latitude)

text: 77° 01' 52''

characteristic: geographic location (longitude)

text: Lima

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HBV genotype F

characteristic: receipt date

text: HBV genotype F

text: Hepatitis B Virus PER001


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Eloy Ruiz

text: Peru

characteristic: geographic location (country and/or sea)

text: 12° 02' 43''

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

text: male

text: HBV genotype F

characteristic: organism

text: HBV genotype F

text: Hepatitis B Virus PER003

characteristic: title


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collecting institution

text: Eloy Ruiz

characteristic: collector name

text: Peru

text: 12° 02' 43''

characteristic: geographic location (latitude)

text: 77° 01' 52''

characteristic: geographic location (longitude)

text: Lima

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: male

text: HBV genotype F

text: HBV genotype F

text: Hepatitis B Virus PER009


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HBV genotype F

characteristic: receipt date

text: HBV genotype F

text: Hepatitis B Virus PER010


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

characteristic: collector name

text: Peru

characteristic: geographic location (country and/or sea)

text: 12° 02' 43''

characteristic: geographic location (latitude)

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

text: male

text: HBV genotype F

characteristic: organism

text: HBV genotype F

text: Hepatitis B Virus PER012

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

characteristic: geographic location (longitude)

text: Lima

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: male

text: HBV genotype F

text: HBV genotype F

text: Hepatitis B Virus PER013


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HBV genotype F

characteristic: receipt date

text: HBV genotype F

text: Hepatitis B Virus PER014


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

characteristic: collector name

text: Peru

characteristic: geographic location (country and/or sea)

text: 12° 02' 43''

characteristic: geographic location (latitude)

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

text: female

text: HBV genotype F

characteristic: organism

text: HBV genotype F

text: Hepatitis B Virus PER015

characteristic: title


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

characteristic: geographic location (longitude)

text: Lima

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: female

text: HBV genotype F

text: HBV genotype F

text: Hepatitis B Virus PER017


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HBV genotype F

characteristic: receipt date

text: HBV genotype F

text: Hepatitis B Virus PER019


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

characteristic: collector name

text: Peru

characteristic: geographic location (country and/or sea)

text: 12° 02' 43''

characteristic: geographic location (latitude)

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

text: male

text: HBV genotype F

characteristic: organism

text: HBV genotype F

text: Hepatitis B Virus PER023

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

characteristic: geographic location (longitude)

text: Lima

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: male

text: HBV genotype F

text: HBV genotype F

text: Hepatitis B Virus PER026


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HBV genotype F

characteristic: receipt date

text: HBV genotype F

text: Hepatitis B Virus PER028


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

characteristic: collector name

text: Peru

characteristic: geographic location (country and/or sea)

text: 12° 02' 43''

characteristic: geographic location (latitude)

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

text: male

text: HBV genotype F

characteristic: organism

text: HBV genotype F

text: Hepatitis B Virus PER030

characteristic: title


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

characteristic: geographic location (longitude)

text: Lima

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: female

text: HBV genotype F

text: HBV genotype F

text: Hepatitis B Virus PER034


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HBV genotype F

characteristic: receipt date

text: HBV genotype F

text: Hepatitis B Virus PER039


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

characteristic: collector name

text: Peru

characteristic: geographic location (country and/or sea)

text: 12° 02' 43''

characteristic: geographic location (latitude)

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

text: male

text: HBV genotype F

characteristic: organism

text: HBV genotype F

text: Hepatitis B Virus PER040

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

characteristic: geographic location (longitude)

text: Lima

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: male

text: HBV genotype F

text: HBV genotype F

text: Hepatitis B Virus PER041


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HBV genotype F

characteristic: receipt date

text: HBV genotype F

text: Hepatitis B Virus PER042


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

characteristic: collector name

text: Peru

characteristic: geographic location (country and/or sea)

text: 12° 02' 43''

characteristic: geographic location (latitude)

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

text: male

text: HBV genotype F

characteristic: organism

text: HBV genotype F

text: Hepatitis B Virus PER043

characteristic: title


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

characteristic: geographic location (longitude)

text: Lima

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: female

text: HBV genotype F

text: HBV genotype F

text: Hepatitis B Virus PER044


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Eloy Ruiz

text: Peru

text: 12° 02' 43''

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: HBV genotype F

characteristic: receipt date

text: HBV genotype F

text: Hepatitis B Virus PER047


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Eloy Ruiz

characteristic: collector name

text: Peru

characteristic: geographic location (country and/or sea)

text: 12° 02' 43''

characteristic: geographic location (latitude)

text: 77° 01' 52''

text: Lima

text: human

text: diseased

text: Homo sapiens

text: male

text: HBV genotype F

characteristic: organism

text: HBV genotype F

text: Hepatitis B Virus PER049

characteristic: title