characteristic: External Id

text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_32C_BioRep1_RNASeq_S4

text: tomato

text: no DSN treatment

text: Solanum lycopersicum

text: Solanum lycopersicum


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA Bordeaux

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 30DPA_pericarp_nuclei_4C_BioRep2_RNASeq_S5

tag: Namespace:INRA Bordeaux

characteristic: Submitter Id

text: tomato

characteristic: common name

text: no DSN treatment

characteristic: description

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

characteristic: title


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_8C_BioRep2_RNASeq_S6

text: tomato

text: no DSN treatment

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_16C_BioRep2_RNASeq_S7

text: tomato

text: no DSN treatment

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_32C_BioRep2_RNASeq_S8

text: tomato

text: no DSN treatment

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_4C_BioRep3_RNASeq_S9

text: tomato

text: no DSN treatment

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_8C_BioRep3_RNASeq_S10

text: tomato

text: no DSN treatment

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_16C_BioRep3_RNASeq_S11

text: tomato

text: no DSN treatment

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_32C_BioRep3_RNASeq_S12

text: tomato

text: no DSN treatment

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_4C_BioRep1_RNASeq_S13

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_8C_BioRep1_RNASeq_S14

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_16C_BioRep1_RNASeq_S15

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_32C_BioRep1_RNASeq_S16

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_4C_BioRep2_RNASeq_S17

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_8C_BioRep2_RNASeq_S18

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_16C_BioRep2_RNASeq_S19

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_16C_BioRep2_RNASeq_S20

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_32C_BioRep2_RNASeq_S21

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_4C_BioRep3_RNASeq_S22

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_8C_BioRep3_RNASeq_S23

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_16C_BioRep3_RNASeq_S24

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: INRA Bordeaux

text: public

text: 30DPA_pericarp_nuclei_32C_BioRep3_RNASeq_S25

text: tomato

text: with DSN

text: Solanum lycopersicum

text: Solanum lycopersicum


text: UQ

text: public

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: Sydney

characteristic: geographic location (region and locality)

characteristic: isolate

text: Lung

characteristic: isolation source

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: strain

text: Australian CF shared strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UQ

text: public

text: Australia

text: Brisbane

text: Lung

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Australian CF shared strain


text: UQ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Australia

text: Perth

text: Lung

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Australian CF shared strain


E-MTAB-5859:Sample 10

text: Iowa State University

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 10

tag: Namespace:Iowa State University

characteristic: Submitter Id

unit: day

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

text: Protocols: Chickens were housed in 4 separate rooms (2 challenged rooms, 2 non-challenged rooms) and the two breeds were intermixed in each room in a biosafety level 2 facility. To obtain tissue samples at 2, 6, and 10 days post inoculation, approximately one-third of the birds were euthanized with sodium pentobarbital solution at each of the three time points. The lung was harvested and placed into RNAlater® solution (ThermoFisher Scientific, Waltham, Massachusetts) for short-term storage. Within a week, the lung tissue was removed from RNA-later and moved to -80°C freezer for long-term storage. Challenged chickens were inoculated with a high titered lentogenic Newcastle Disease Virus (NDV) strain via the eyes and nostrils at three weeks of age. Non-challenged chickens were given PBS via the same route. RNA was isolated from the lung tissue using the RNAqueous® kit (ThermoFisher Scientific, Waltham, Massachusetts) and samples were then DNase treated using the DNA-free™ kit (ThermoFisher Scientific, Waltham, Massachusetts). The quality of all samples was validated (RNA quality number>8.0) using the Fragment Analyzer™ (Advanced Analytical Technologies, Ankeny, Iowa). A 500 ng input for each sample was utilized to construct the cDNA library using TruSeq® RNA Sample Preparation v2 Guide (Illumina, San Diego, California) using the high throughput protocol. Following cDNA library validation using the Fragment Analyzer™ (Advanced Analytical Technologies, Ankeny, Iowa).

characteristic: description

text: normal

characteristic: disease

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: resistant

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 10

type: has member


E-MTAB-5859:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 16

text: Fayoumi

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: female

text: Sample 16

characteristic: title


E-MTAB-5859:Sample 5

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5859:Sample 5

characteristic: Submitter Id

text: Fayoumi

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: female

text: Sample 5


E-MTAB-5859:Sample 6

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 6

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: female

text: Sample 6


E-MTAB-5859:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 9

text: Fayoumi

text: ArrayExpress

text: chicken

text: normal

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: resistant

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 9


E-MTAB-5859:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5859:Sample 11

text: Fayoumi

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 11

characteristic: title


E-MTAB-5859:Sample 13

text: Iowa State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5859:Sample 13

characteristic: Submitter Id

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 13


E-MTAB-5859:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 14

text: Fayoumi

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 14


E-MTAB-5859:Sample 15

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 15

text: Fayoumi

text: ArrayExpress

text: chicken

text: normal

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: resistant

characteristic: phenotype

text: Gallus gallus

text: male

characteristic: sex

text: Sample 15


E-MTAB-5859:Sample 4

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 4

text: Fayoumi

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 4

characteristic: title


E-MTAB-5859:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 7

characteristic: Submitter Id

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 7


E-MTAB-5859:Sample 8

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 8

text: Fayoumi

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 8


E-MTAB-5859:Sample 1

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5859:Sample 1

text: Leghorn

text: ArrayExpress

text: chicken

text: normal

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 1


E-MTAB-5859:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 12

text: Leghorn

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: female

text: Sample 12

characteristic: title


E-MTAB-5859:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 3

characteristic: Submitter Id

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: female

text: Sample 3


E-MTAB-5859:Sample 45

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5859:Sample 45

text: Leghorn

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: female

text: Sample 45


E-MTAB-5859:Sample 47

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 47

text: Leghorn

text: ArrayExpress

text: chicken

text: normal

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 47


E-MTAB-5859:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 2

text: Leghorn

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 2

characteristic: title


E-MTAB-5859:Sample 23

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 23

characteristic: Submitter Id

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 23


E-MTAB-5859:Sample 34

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 34

text: Leghorn

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 34


E-MTAB-5859:Sample 44

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 44

text: Leghorn

text: ArrayExpress

text: chicken

text: normal

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: male

characteristic: sex

text: Sample 44


E-MTAB-5859:Sample 46

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 46

text: Leghorn

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 46

characteristic: title


E-MTAB-5859:Sample 48

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 48

characteristic: Submitter Id

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

text: chicken

text: normal

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 48


E-MTAB-5859:Sample 31

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 31

text: Fayoumi

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: Newcastle disease

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: female

text: Sample 31


E-MTAB-5859:Sample 33

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5859:Sample 33

text: Fayoumi

text: ArrayExpress

text: chicken

text: Newcastle disease

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: resistant

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 33


E-MTAB-5859:Sample 37

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 37

text: Fayoumi

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: female

text: Sample 37

characteristic: title


E-MTAB-5859:Sample 38

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 38

characteristic: Submitter Id

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: female

text: Sample 38


E-MTAB-5859:Sample 40

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5859:Sample 40

text: Fayoumi

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: Newcastle disease

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: female

text: Sample 40


E-MTAB-5859:Sample 43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 43

text: Fayoumi

text: ArrayExpress

text: chicken

text: Newcastle disease

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: resistant

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 43


E-MTAB-5859:Sample 32

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 32

text: Fayoumi

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 32

characteristic: title


E-MTAB-5859:Sample 35

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 35

characteristic: Submitter Id

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 35


E-MTAB-5859:Sample 36

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 36

text: Fayoumi

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: Newcastle disease

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 36


E-MTAB-5859:Sample 39

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 39

text: Fayoumi

text: ArrayExpress

text: chicken

text: Newcastle disease

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: resistant

characteristic: phenotype

text: Gallus gallus

text: male

characteristic: sex

text: Sample 39


E-MTAB-5859:Sample 41

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 41

text: Fayoumi

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 41

characteristic: title


E-MTAB-5859:Sample 42

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 42

characteristic: Submitter Id

characteristic: age

text: Fayoumi

characteristic: breed

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: resistant

text: Gallus gallus

text: male

text: Sample 42


E-MTAB-5859:Sample 17

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 17

text: Leghorn

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: Newcastle disease

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: female

text: Sample 17


E-MTAB-5859:Sample 19

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5859:Sample 19

text: Leghorn

text: ArrayExpress

text: chicken

text: Newcastle disease

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 19


E-MTAB-5859:Sample 21

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 21

text: Leghorn

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: female

text: Sample 21

characteristic: title


E-MTAB-5859:Sample 22

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 22

characteristic: Submitter Id

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: female

text: Sample 22


E-MTAB-5859:Sample 26

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5859:Sample 26

text: Leghorn

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: Newcastle disease

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: female

text: Sample 26


E-MTAB-5859:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 28

text: Leghorn

text: ArrayExpress

text: chicken

text: Newcastle disease

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: female

characteristic: sex

text: Sample 28


E-MTAB-5859:Sample 29

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 29

text: Leghorn

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: female

text: Sample 29

characteristic: title


E-MTAB-5859:Sample 18

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 18

characteristic: Submitter Id

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 18


E-MTAB-5859:Sample 20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 20

text: Leghorn

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: Newcastle disease

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 20


E-MTAB-5859:Sample 24

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 24

text: Leghorn

text: ArrayExpress

text: chicken

text: Newcastle disease

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: lung

characteristic: organism part

text: susceptible

characteristic: phenotype

text: Gallus gallus

text: male

characteristic: sex

text: Sample 24


E-MTAB-5859:Sample 25

text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5859:Sample 25

text: Leghorn

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 25

characteristic: title


E-MTAB-5859:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University

text: public

characteristic: SRA accession

text: E-MTAB-5859:Sample 27

characteristic: Submitter Id

characteristic: age

text: Leghorn

characteristic: breed

text: ArrayExpress

text: chicken

text: Newcastle disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 27


E-MTAB-5859:Sample 30

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

text: public

text: E-MTAB-5859:Sample 30

text: Leghorn

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: Newcastle disease

characteristic: disease

text: Gallus gallus

text: Gallus gallus

text: lung

text: susceptible

text: Gallus gallus

text: male

text: Sample 30


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 12


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 14


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 22

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 25


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 50


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 53

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 54


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 55


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 59

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 71


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 77


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 80

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 84


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 89


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 90

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 93


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 97


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 103

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 104


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 106


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 108

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 109


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 113


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 135

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 137


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 147


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human gut metagenome

characteristic: common name

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 157

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FISABIO

text: public

characteristic: collection date

text: human gut metagenome

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: French Guiana

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina

text: DNA virus metagenome from subject 161


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut metagenome

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: French Guiana

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: DNA virus metagenome from subject 163


characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

characteristic: phenotype

text: Homo sapiens

characteristic: subject id

characteristic: title


text: iPSC

text: Homo sapiens

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: iPSC

text: Homo sapiens


text: Mycobacterium abscessus

text: SC

text: public

text: Mycobacterium abscessus

text: Mycobacterium abscessus

text: Mycobacterium abscessus


text: UNIBE-IG

text: public

text: dog

text: Pomeranian -female castrated

characteristic: description

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Pomeranian


text: UNIBE-IG

text: public

text: dog

text: Pomeranian -male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Pomeranian


text: UNIBE-IG

text: public

text: dog

text: Pomeranian -male castrated

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Pomeranian


text: UNIBE-IG

text: public

text: dog

text: German Spitz -male castrated

text: Canis lupus familiaris

text: Canis lupus familiaris

text: German Spitz


text: UNIBE-IG

text: public

text: dog

text: Mittelspitz -male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Mittelspitz


text: E

text: public

characteristic: collection date

text: human

text: 16S rRNA gene based microbial diversity of stool sample

text: human intestinal tract

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: stool sample

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: MiSeq

characteristic: sequencing method

text: Stool sample for probiotics study


Andreas

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: E

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Andreas

characteristic: Submitter Id

text: human

characteristic: common name

text: human intestinal tract

text: gut

text: stool sample

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: MiSeq

text: Stool sample for probiotics study

characteristic: title


Tick 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Tick 1

text: brown dog tick

text: Rhipicephalus sanguineus

text: Rhipicephalus sanguineus

text: Tick 1


text: public

tag: Namespace:Centrum Medyczne Ksztalcenia Podyplomowego

text: house mouse

text: sepsis

characteristic: description

text: liver

characteristic: organ

text: Mus musculus

text: Mus musculus

characteristic: time


text: Centrum Medyczne Ksztalcenia Podyplomowego

text: public

text: house mouse

text: sepsis

text: liver

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: control

text: liver

text: Mus musculus

text: Mus musculus


text: E

text: public

characteristic: collection date

text: human

text: human intestinal tract

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: stool sample

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: MiSeq

characteristic: sequencing method

text: Stool sample_willow bark


text: Canis Lupus Familiaris

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: dog

characteristic: common name

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

characteristic: subject id

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Bioinformatics Core The Institute of Cancer Research

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Th-MYCNCPM32-model is based on 129X1/SvJ-Tg(TH-MYCN)41Waw/Nci. Homozygote tumour bearing mice for MYCN were subject to individualized dose escalation schedule for cyclophosphamide (CPM) until they acquired resistance to 32mg/kg CPM. Mice included in the study were sacrificed and primary tumours were dissected out. Personalised dose escalation protocol of the chemotherapy drug cyclophosphamide. Homozygote for MYCN leads to 100% tumour penetration at the age 40-89, once the tumour was detected by palpation at a size of 5mm the treatment began. Duration of treatment was between 66-166 days. Dosing was initiated with a single dose of 16 mg/kg. Upon regrowth (following regression in size), the tumor was dosed again with 16 mg/kg. This treatment was repeated until tumors no longer responded to the dose, at which time, the dose was increased by 150%. Studies were terminated when the tumor became resistant to 32 mg/kg CPM and continued to grow to a palpable size of 15 mm or immediately upon showing any signs of ill health. Tumour samples were sent to a commerical sequencing unit which extracted the RNA. TruSeq® Stranded Total RNA according to manufacturers protocol

characteristic: description

text: adult

characteristic: developmental stage

text: neuroblastoma

characteristic: disease

text: Th-MYCN

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: neoplasm

characteristic: organism part

text: chemotherapy sensitive

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bioinformatics Core The Institute of Cancer Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: neuroblastoma

text: Th-MYCN

text: Mus musculus

text: Mus musculus

text: neoplasm

text: chemotherapy sensitive

text: Mus musculus

text: male


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Th-MYCNCPM32-model is based on 129X1/SvJ-Tg(TH-MYCN)41Waw/Nci. Homozygote tumour bearing mice for MYCN were subject to individualized dose escalation schedule for cyclophosphamide (CPM) until they acquired resistance to 32mg/kg CPM. Mice included in the study were sacrificed and primary tumours were dissected out. Tumour samples were sent to a commerical sequencing unit which extracted the RNA. TruSeq® Stranded Total RNA according to manufacturers protocol

text: adult

text: neuroblastoma

text: Th-MYCN

text: Mus musculus

characteristic: organism

text: Mus musculus

text: neoplasm

text: chemotherapy resistant

text: Mus musculus

text: female

characteristic: title


text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: neuroblastoma

characteristic: disease

text: Th-MYCN

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: neoplasm

characteristic: organism part

text: chemotherapy resistant

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KAROLINSKA INSTITUTET

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:KAROLINSKA INSTITUTET

characteristic: collection date

text: the salivary sample was collected from a patient with periondontitis

text: host-associated

characteristic: environment (biome)

text: human oral

characteristic: environment (feature)

text: human saliva

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

characteristic: humam oral environmental package

text: metagenome

characteristic: investigation type

characteristic: library size

text: human oral metagenome

text: The salivary microbiota in periodontitis (Lundmark A. 2017)

characteristic: project name

unit: mL

characteristic: sample volume or weight for DNA extraction

text: human oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Saliva microbiota in periodontitis (Anna Lundmark 2017)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KAROLINSKA INSTITUTET

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: the salivary sample was collected from a healthy individual without periondontitis

characteristic: description

text: host-associated

text: human oral

text: human saliva

text: Sweden

text: human-oral

text: metagenome

text: human oral metagenome

characteristic: organism

text: human oral metagenome

text: Illumina MiSeq

text: 16S rRNA gene

characteristic: title


text: CNRS and university of Rennes 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:CNRS and university of Rennes 1

characteristic: collection date

text: Groundwater sampled in an artesian borehole drilled in an hard rock aquifer was enriched in iron-oxidizing bacteria with batch incubations. Metagenomic reads from the batchs were assembled with SPADES. Contigs were binned with anvi'o to extract draft genomes of iron-oxidizing bacteria.

text: subterrestrial habitat

characteristic: environment (biome)

text: phreatic zone

characteristic: environment (feature)

text: underground water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: CRITEX

text: metagenome

text: Illumina MiSeq

text: Batch enrichments of groundwater collected in an artesian borehole coupled to metagenome assembly and binning of iron-oxidizing bacteria genomes

text: water

characteristic: water environmental package


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: subject id


text: Enterobacter cloacae

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Enterobacter cloacae

text: Enterobacter cloacae

characteristic: organism

text: Enterobacter cloacae

characteristic: title


text: Streptococcus suis

characteristic: ArrayExpress-Species

text: SC

text: public

text: Streptococcus suis

text: Streptococcus suis

text: Streptococcus suis


text: Salmonella enterica subsp. enterica serovar Typhi

text: SC

text: public

text: PHL

text: Salmonella

characteristic: genus

text: male

characteristic: isolate

text: blood

text: blood

type: AMR curated data - CABBAGE

value: ceftriaxone

value: CLSI

value: broth dilution

value: Vitek

value: susceptible

value: Salmonella enterica

value: trimethoprim-sulfamethoxazole

value: ampicillin

value: chloramphenicol

value: ciprofloxacin

value: cefotaxime

value: nalidixic acid


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


text: SC

characteristic: INSDC first public

text: public

text: PHL

characteristic: SRA accession

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: common name

text: Salmonella

text: male

text: blood

text: blood

characteristic: subject id


text: SC

characteristic: INSDC last update

text: public

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text: PHL

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: Submitter Id

text: Salmonella

text: male

text: blood

text: blood

characteristic: organism


text: SC

text: public

text: PHL

text: Salmonella

text: male

text: urine

text: urinary tract

characteristic: title


text: SC

text: public

text: PHL

text: Salmonella

characteristic: genus

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: female

characteristic: isolate

text: blood

text: blood


characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: ENA-CHECKLIST

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: PHL

text: Salmonella

text: female

text: urine

text: urinary tract


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood


characteristic: External Id

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

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text: SC

characteristic: INSDC center name

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text: blood

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text: SC

characteristic: INSDC first public

text: public

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text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: SRA accession

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: common name

text: Salmonella

text: female

text: blood

text: blood


text: SC

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text: PHL

text: Salmonella

text: male

text: blood

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characteristic: subject id


text: SC

characteristic: INSDC last update

text: public

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text: Salmonella

text: female

text: blood

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text: SC

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characteristic: INSDC status

text: PHL

text: Salmonella

text: male

text: blood

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text: SC

text: public

text: PHL

characteristic: Submitter Id

text: Salmonella

text: female

text: blood

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text: SC

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text: PHL

text: Salmonella

text: female

text: blood

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characteristic: organism


text: SC

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text: male

text: blood

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text: Salmonella

text: male

characteristic: isolate

text: blood

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characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: ENA-CHECKLIST

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: stool

text: gastrointestinal system

value: resistant


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood


characteristic: ENA-LAST-UPDATE

text: SC

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text: PHL

text: Salmonella

text: male

text: blood

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characteristic: External Id

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text: female

text: blood

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text: SC

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text: Salmonella

text: male

text: blood

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text: SC

characteristic: INSDC first public

text: public

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text: Salmonella

text: male

text: blood

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text: SC

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text: PHL

characteristic: SRA accession

text: Salmonella

text: female

text: blood

text: blood


text: SC

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text: PHL

characteristic: common name

text: Salmonella

text: female

text: blood

text: blood


text: SC

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text: PHL

text: Salmonella

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text: blood

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characteristic: subject id


text: SC

characteristic: INSDC last update

text: public

text: PHL

text: Salmonella

text: male

text: blood

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text: SC

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characteristic: INSDC status

text: PHL

text: Salmonella

text: female

text: blood

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text: SC

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characteristic: Submitter Id

text: Salmonella

text: female

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood

characteristic: organism


text: SC

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text: PHL

text: Salmonella

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text: blood

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characteristic: title


text: SC

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text: female

text: blood

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text: SC

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text: Salmonella

text: female

characteristic: isolate

text: blood

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characteristic: ArrayExpress-SPECIES

text: SC

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text: Salmonella

text: male

text: blood

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characteristic: ENA-CHECKLIST

text: SC

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text: PHL

text: Salmonella

text: male

text: blood

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characteristic: ENA-FIRST-PUBLIC

text: SC

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text: PHL

text: Salmonella

text: female

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text: Salmonella

text: female

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characteristic: External Id

text: SC

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text: PHL

text: Salmonella

text: female

text: blood

text: blood


text: SC

characteristic: INSDC center name

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text: Salmonella

text: female

text: blood

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text: SC

characteristic: INSDC first public

text: public

text: PHL

text: Salmonella

text: female

text: blood

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text: SC

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text: PHL

characteristic: SRA accession

text: Salmonella

text: male

text: blood

text: blood


text: SC

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text: PHL

characteristic: common name

text: Salmonella

text: female

text: blood

text: blood


text: SC

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text: PHL

text: Salmonella

text: male

text: blood

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text: SC

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text: public

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text: Salmonella

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text: abscess


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text: PHL

text: Salmonella

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text: SC

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text: PHL

characteristic: Submitter Id

text: Salmonella

text: female

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: male

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characteristic: organism


text: SC

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text: PHL

text: Salmonella

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text: Salmonella

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text: blood

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text: Salmonella

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text: blood

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text: PHL

text: Salmonella

text: male

text: blood

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characteristic: ENA-LAST-UPDATE

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text: Salmonella

text: male

text: stool

text: gastrointestinal system

value: intermediate


characteristic: External Id

text: SC

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text: PHL

text: Salmonella

text: male

text: blood

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text: SC

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text: Salmonella

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text: blood

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text: Salmonella

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text: Salmonella

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text: PHL

text: Salmonella

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text: blood

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characteristic: subject id


text: SC

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text: PHL

text: Salmonella

text: male

text: blood

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text: SC

text: public

text: PHL

characteristic: Submitter Id

text: Salmonella

text: female

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

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characteristic: organism


text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

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characteristic: title


text: SC

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characteristic: ArrayExpress-SPECIES

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text: public

text: PHL

text: Salmonella

text: male

text: blood

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characteristic: ENA-FIRST-PUBLIC

text: SC

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text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: ENA-LAST-UPDATE

text: SC

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text: PHL

text: Salmonella

text: female

text: blood

text: blood


characteristic: External Id

text: SC

text: public

text: PHL

text: Salmonella

text: female

text: blood

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text: SC

characteristic: INSDC center name

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text: Salmonella

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text: blood

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text: Salmonella

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text: blood

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characteristic: SRA accession

text: Salmonella

text: female

text: blood

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text: SC

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characteristic: common name

text: Salmonella

text: male

text: blood

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text: SC

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text: PHL

text: Salmonella

text: female

text: blood

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characteristic: subject id


text: SC

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text: Salmonella

text: female

text: blood

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text: SC

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characteristic: INSDC status

text: PHL

text: Salmonella

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text: SC

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text: PHL

characteristic: Submitter Id

text: Salmonella

text: female

text: blood

text: blood


text: SC

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text: PHL

text: Salmonella

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text: blood

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characteristic: organism


text: SC

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text: Salmonella

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characteristic: title


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text: blood

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characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: PHL

text: Salmonella

text: female

text: blood

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characteristic: External Id

text: SC

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characteristic: INSDC center name

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characteristic: common name

text: Salmonella

text: male

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text: Salmonella

text: male

text: stool

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characteristic: subject id


text: SC

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text: public

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text: Salmonella

text: female

text: blood

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text: SC

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text: PHL

text: Salmonella

text: female

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: Submitter Id

text: Salmonella

text: female

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood

characteristic: organism


text: SC

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood

characteristic: title


text: SC

text: public

text: PHL

text: Salmonella

characteristic: genus

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: female

characteristic: isolate

text: blood

text: blood


characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: ENA-CHECKLIST

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: urine

text: urinary tract


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood


characteristic: External Id

text: SC

text: public


text: SC

characteristic: INSDC center name

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


text: SC

characteristic: INSDC first public

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: SRA accession

text: Salmonella

text: female

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: common name

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood

characteristic: subject id


text: SC

characteristic: INSDC last update

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood


text: SC

text: public

characteristic: INSDC status

text: PHL

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: Submitter Id

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood

characteristic: organism


text: SC

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood

characteristic: title


text: SC

text: public

text: PHL

text: Salmonella

characteristic: genus

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: female

characteristic: isolate

text: blood

text: blood


characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: stool

text: gastrointestinal system


characteristic: ENA-CHECKLIST

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: External Id

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


text: SC

characteristic: INSDC center name

text: public

text: PHL

text: Salmonella

text: female

text: blood

text: blood


text: SC

characteristic: INSDC first public

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: SRA accession

text: Salmonella

text: female

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: common name

text: Salmonella

text: female

text: stool

text: gastrointestinal system


text: Salmonella enterica subsp. enterica

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

characteristic: strain


text: Salmonella enterica subsp. enterica

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

characteristic: subject id


text: SC

text: public

text: PHL

text: Salmonella

characteristic: genus

text: male

characteristic: isolate

text: blood

text: blood

characteristic: organism

characteristic: title


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: PHL

characteristic: SRA accession

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: common name

text: Salmonella

text: male

text: blood

text: blood


text: SC

characteristic: INSDC last update

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

characteristic: INSDC status

text: PHL

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

characteristic: Submitter Id

text: Salmonella

text: male

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood

characteristic: subject id


text: SC

text: public

text: PHL

text: Salmonella

characteristic: genus

text: female

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: male

characteristic: isolate

text: blood

text: blood


text: SC

text: public

text: PHL

text: Salmonella

text: male

text: blood

text: blood

characteristic: organism


text: Neisseria gonorrhoeae

text: SC

text: public

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

characteristic: title


text: UCSDMI

text: public

text: Not provided

text: false

characteristic: acne medication

text: false

text: Diagnosed by a medical professional (doctor, physician assistant)

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Daily

text: Not provided

text: Yes

text: false

text: false

text: true

text: false

text: false

text: false

characteristic: allergic to i have no food allergies that i know of

text: Not provided

text: true

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: 6 months

text: true

text: Not provided

text: I do not have this condition

characteristic: asd

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Two

text: Not provided

text: Not provided

text: Not provided

characteristic: cancer

text: Not provided

characteristic: cancer treatment

text: I do not have this condition

text: false

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Northeast

text: Yes

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

characteristic: collection date

text: April

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 2015-04-05 10:00

text: Not sure

text: No

characteristic: contraceptive

text: Never

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: Not provided

text: true

text: I do not use deodorant or an antiperspirant

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: Filtered

text: Not provided

text: New England

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Outdoors

text: Primarily infant formula

text: Daily

text: Daily

text: 6 months

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: USA:MA

text: No

text: true

text: centimeters

text: Rarely (less than once/week)

text: Daily

text: human

text: 30de6efc54cd37cdfc5980b23726d3d5cc11a1d333f1ad1839c413d182e3d2e30307b560a3f314bce096a7f08eb48d20581a30eb6f7ab4fa7c7f2c745fac82f7

text: I do not have this condition

text: Not provided

text: Not provided

text: I do not have this condition

text: I do not have this condition

text: false

text: I have lived in my current state of residence for more than a year.

text: I have not been outside of my country of residence in the past year.

text: Some graduate school or professional

text: I do not have this condition

text: No

text: false

text: I do not have this condition

text: Rarely (less than once/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: I do not have this condition

text: Daily

text: Never

text: false

text: false

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: true

text: Daily

text: Daily

text: human gut metagenome

text: true

text: Not provided

text: UCSDMI

text: true

text: I do not have this condition

text: Never

text: Occasionally (1-2 times/week)

text: false

text: Never

text: Never

text: true

text: Caucasian

text: Never

text: Not provided

text: Not provided

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: female

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: MA

text: True

text: False

text: True

text: True

text: False

text: True

text: Never

text: Occasionally (1-2 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: Not provided

text: Not provided

text: Daily

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Never

text: Regularly (3-5 times/week)

text: Not provided

text: Remained stable

text: kilograms

text: Never

text: Occasionally (1-2 times/week)