E-MTAB-5557:Sample 11

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5557:Sample 11

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 11

characteristic: title


E-MTAB-5557:Sample 12

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5557:Sample 12

tag: Namespace:London School of Hygiene and Tropical Medicine

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Mycobacterium tuberculosis H37Rv (SysteMTb) was grown in Middlebrook 7H9 medium supplemented with 0.4% glycerol, 0.085% NaCl, 0.5% BSA and 0.05% Tyloxapol in roller bottle culture (2 rpm at 37°C). For nitric oxide experiments, cultures were grown until mid-exponential phase and Diethylenetriamine/nitric oxide adduct (deta/NO, Sigma) was added to a final concentration of 1 mM. For transcriptomic analyses, samples were harvested from triplicate cultures immediately before addition of nitric oxide and 20 minutes, 2 and 24 hours after nitric oxide addition. For each sample, 25 mL of culture were spun down and isolation of RNA was performed using the FastRNA Pro blue kit from QBiogene/MP Bio according to manufacturer’s instructions. Cultures were first rapidly cooled by addition of ice directly to the culture prior to centrifugation. All RNA samples were treated with Turbo DNase free (Ambion) until any DNA contamination removed. Concentration and quality control of RNA samples was measured by Nanodrop (ND-1000, Labtech) and Agilent RNA chip (2100 Bioanalyser). For construction of directional RNA-seq libraries, Ribo-Zero™ and ScriptSeq™ v2 Kits (Epicentre) were used. Briefly, 5 µg of total RNA were used for ribosomal RNA removal using the Ribo-Zero rRNA removal kit (Gram-Positive Bacteria) following manufacturer’s instructions. 50 ng of Ribo-Zero-treated RNA were used to construct cDNA libraries for RNA sequencing using the ScriptSeq™ v2 Kit.

characteristic: description

text: Mycobacterium tuberculosis H37Rv

characteristic: organism

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 12

type: has member


E-MTAB-5557:Sample 13

text: London School of Hygiene and Tropical Medicine

text: public

text: E-MTAB-5557:Sample 13

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 13


E-MTAB-5557:Sample 14

text: public

text: E-MTAB-5557:Sample 14

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 14


E-MTAB-5557:Sample 15

text: public

text: E-MTAB-5557:Sample 15

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 15


E-MTAB-5557:Sample 2

text: public

text: E-MTAB-5557:Sample 2

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 2


E-MTAB-5557:Sample 3

text: public

text: E-MTAB-5557:Sample 3

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 3


E-MTAB-5557:Sample 4

text: public

text: E-MTAB-5557:Sample 4

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 4


E-MTAB-5557:Sample 5

text: public

text: E-MTAB-5557:Sample 5

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 5


E-MTAB-5557:Sample 6

text: public

text: E-MTAB-5557:Sample 6

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 6


E-MTAB-5557:Sample 7

text: public

text: E-MTAB-5557:Sample 7

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 7


E-MTAB-5557:Sample 8

text: public

text: E-MTAB-5557:Sample 8

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 8


E-MTAB-5557:Sample 9

text: public

text: E-MTAB-5557:Sample 9

text: ArrayExpress

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Mycobacterium tuberculosis H37Rv

text: Sample 9


text: UNIVERSITY OF ZuRICH

text: public

text: Physcomitrella_patens_sporophyte_20_23days_old

tag: Namespace:UNIVERSITY OF ZuRICH

characteristic: dev stage

text: Physcomitrella patens

text: Physcomitrella patens

text: Sporophyte samples from Physcomitrella patens


text: UNIVERSITY OF ZuRICH

text: public

text: Physcomitrella_patens_sporophyte_25_26days_old

text: Physcomitrella patens

text: Physcomitrella patens


text: UNIVERSITY OF ZuRICH

text: public

text: Physcomitrella_patens_sporophyte_28_30days_old

text: Physcomitrella patens

text: Physcomitrella patens


text: The Babraham Institute

text: public

tag: Namespace:The Babraham Institute

text: ArrayExpress

text: undifferentiated spermatogonia

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Isolated postnatal day 14 testes from mice heterozygous for the Miwi2- tdTomato transcriptional allele were dealbulginated and digested with collagenase (0,5 mg/ml, Sigma) at 32oC for 10 minutes shaking in 1ml of DMEM media (Life technologies) supplemented with Pen/Strep (Life technologies), NEAA (Life technologies), sodium pyruvate (Life technologies) and sodium lactate (Sigma). After digestion seminiferous tubules were collected by centrifugation at 1000 rpm for 5 min. Single cell suspension was prepared by further digesting seminiferous tubules in 1 ml of 0,05% trypsin (Life technologies) and DNase (Sigma), added to 0,05 mg/ml of final concentration, at 32oC for 8-10 minutes shaking. After digestion trypsin was neutralized by adding 100 μl of FCS. Cells were spun and resuspended in PBS with 3% FCS. Germ cells were stained with following antibodies: c-Kit 1:800 (eBioscience), CD45-biotin 1:400 (eBioscience), CD51-biotin 1:100 (Biolegend), streptavidin-qDot 1:50 (eBioscience), CD9 1:50 (eBioscience) in PBS with 3% of FCS and 0,01% sodium azide. SYTOX Blue (Life technologies) was used as a living dye. Target population was selected by excluding cell doublets and CD45pos and CD51pos cells by initially choosing to analyze cells with low side scatter and negative for live cell dye SYTOX Blue. Among CD45neg and CD51neg cells, a target population was identified as c-Kitneg and having a live fluorescence of tdTomato and being CD9pos. Cells were sorted with an 85μm nozzle using a FACSAria II SORP (BD Biosciences). This strategy results in the isolation of undifferentiated spermatogonia with a purity of greater than 98%. Sorted cells were digested with proteinase K at 55C over night. The DNA was extracted using 1 Volume Phenol/Chloroform twice followed by the addition of 1 Volume chloroform and then DNA was precipitated by addition of 1 volume isopropanol with the addition of linear acrylamide and washed with 70% Ethanol before resuspension. For bisulfite conversion DNA was isolated from sorted cells as described above. Whole genome bisulfite sequencing libraries were generated using a post-bisulfite adaptor tagging (PBAT) method as previously described4 using 10 cycles of PCR amplification. Three biological replicates were generated per genotype.

text: postnatal day 14

characteristic: developmental stage

text: Mili Knock-Out

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: The Babraham Institute

text: public

text: ArrayExpress

text: undifferentiated spermatogonia

text: house mouse

text: postnatal day 14

text: Miwi2 Knock-Out

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

characteristic: title


characteristic: External Id

text: The Babraham Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: undifferentiated spermatogonia

text: house mouse

text: postnatal day 14

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus


E-MTAB-5566:HCT1116-shCtrl rep1

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5566:HCT1116-shCtrl rep1

tag: Namespace:School of Medicine, Health Science Center, Shenzhen University, Shenzhen, China

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Protocols: HCT116 cells were infected with lentivirus containing non-targeting shRNA or shRNA targeting PBRM1. After 72h of infection, cells were harvested and total RNA was extracted. Alternatively, HCT116 cells were transfected with non-targeting siRNA or siRNA targeting PBRM1. After 72h of transfection, cells were harvested and total RNA was extracted. Total RNA was extracted from HCT116 cells using RNeasy kit from Qiagen according to manufacturer's instructions Oligo (dT) magnetic beads are used to select mRNA with polyA tail. Fragment the target RNA and reverse transcription to double-strand cDNA (dscDNA) by N6 random primer. End repair the dscDNA with phosphate at 5' end and stickiness 'A' at 3' end, then ligate adaptor with stickiness 'T' at 3' end to the dscDNA. Two specific primers are used to amplify the ligation product. Denature the PCR product by heat and the single strand DNA is cyclized by splint oligo and DNA ligase.

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: HCT1116-shCtrl rep1


E-MTAB-5566:HCT1116-shCtrl rep2

text: School of Medicine, Health Science Center, Shenzhen University, Shenzhen, China

text: public

text: E-MTAB-5566:HCT1116-shCtrl rep2

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: HCT1116-shCtrl rep2


E-MTAB-5566:HCT1116-shPBRM1 rep1

text: public

text: E-MTAB-5566:HCT1116-shPBRM1 rep1

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: HCT1116-shPBRM1 rep1


E-MTAB-5566:HCT1116-shPBRM1 rep2

text: public

text: E-MTAB-5566:HCT1116-shPBRM1 rep2

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: HCT1116-shPBRM1 rep2


text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


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text: Environmental Microbiology and Biotechnology, Aarhus University

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text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


v

text: public

text: v

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


b

text: public

text: b

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


n

text: public

text: n

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


m

text: public

text: m

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


dsgdsggds

text: public

text: dsgdsggds

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


dfjfd

text: public

text: dfjfd

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


fdhjgjhgj

text: public

text: fdhjgjhgj

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


fdhjfdjf

text: public

text: fdhjfdjf

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


fdhdh

text: public

text: fdhdh

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


fdhjf

text: public

text: fdhjf

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


dsgdsgds

text: public

text: dsgdsgds

text: European eel

text: Anguilla anguilla

text: Anguilla anguilla

text: skrald


birke

text: KOALA GENOME CONSORTIUM

text: public

text: birke

tag: Namespace:KOALA GENOME CONSORTIUM

characteristic: collection date

text: koala

text: 1 Phascolarctos cinereus sample Birke

text: Australia

characteristic: geographic location (country and/or sea)

text: Queensland, Birkdale

characteristic: geographic location (region and locality)

text: Euthanised due to car strike injuries

characteristic: isolation source

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: Male

characteristic: sex

text: Birke, Australia Zoo Wildlife Hospital

characteristic: specimen voucher

text: Kidney

characteristic: tissue type

text: Animal sample from Phascolarctos cinereus for genome assembly


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:TEL AVIV UNIVERSITY

text: Wheat (Triticum spp.) is one of the founder crops that drove the Neolithic transition from hunter-gatherer to sedentary agrarian societies in the Fertile Crescent over 10,000 years ago. Identifying the suite of genetic modifications underlying wheat's domestication requires knowledge of the genome of its allotetraploid progenitor, wild emmer (T. turgidum ssp. dicoccoides). Here we report a 10.1-gigabase assembly of the 14 chromosomes of wild tetraploid wheat.

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Wild emmer wheat genome sequencing project

characteristic: title


text: Oregon Health & Science University

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Oregon Health & Science University

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: beta cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: The islets were not cultured. High purity intact human islets were obtained from the Integrated islet distribution program (IIDP). To isolate the beta cells, islets were enzymatically dissociated into single cells and stained using surface monoclonal antibodies and sorted using FACS following published protocols (pmid:19383399 and27399229). The FACS-sorted beta cells were collected and processed for total RNA isolation. Isolation of RNA from gallbladder cells and beta cells using Qiagen RNeasy protocol TruSeq RNA sample library preparation v2 as recommended by the manufacturer Illumina

text: wild type

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Hpi1 positive

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Oregon Health & Science University

text: public

text: ArrayExpress

text: epithelial cell of gall bladder

text: human

text: Protocols: In vitro culture protocol for human gallbladder cells. Dissociated cells from human gallbladder and cystic duct were cultured in rat mammary feeder culture using a modified culture medium as published in PMID 23562832. Isolation of RNA from gallbladder cells and beta cells using Qiagen RNeasy protocol TruSeq RNA sample library preparation v2 as recommended by the manufacturer Illumina

characteristic: description

text: wild type

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: gallbladder

text: no enrichment

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oregon Health & Science University

text: public

text: ArrayExpress

text: epithelial cell of gall bladder reprogrammed to beta cell

text: human

text: Protocols: In vitro culture protocol for human gallbladder cells. Dissociated cells from human gallbladder and cystic duct were cultured in rat mammary feeder culture using a modified culture medium as published in PMID 23562832. Adenoviral transduction of expanded/cultured human gallbladder cells and Reprogramming culture conditions of transduced human gallbladder cells Isolation of RNA from gallbladder cells and beta cells using Qiagen RNeasy protocol TruSeq RNA sample library preparation v2 as recommended by the manufacturer Illumina

text: expression of PDX1, NEUROG3, MAFA, and PAX6

text: Homo sapiens

text: Homo sapiens

text: gallbladder

text: Hpi1 negative

text: epithelial cell of gall bladder

characteristic: progenitor cell type

text: Homo sapiens


text: Oregon Health & Science University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: gallbladder

text: Hpi1 positive

text: epithelial cell of gall bladder

text: Homo sapiens

characteristic: title


text: Oregon Health & Science University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: Homo sapiens

text: Homo sapiens

text: gallbladder

text: no enrichment

text: epithelial cell of gall bladder

text: Homo sapiens


text: Trichuris trichiura

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human whipworm

characteristic: common name

text: Trichuris trichiura

text: Trichuris trichiura

characteristic: subject id

text: Trichuris trichiura


Dryopteris blanfordii cpDNA

characteristic: ENA-CHECKLIST

text: LOMONOSOV MOSCOW STATE UNIVERSITY

text: public

text: Dryopteris blanfordii cpDNA

tag: Namespace:LOMONOSOV MOSCOW STATE UNIVERSITY

text: Dryopteris blanfordii

text: Dryopteris blanfordii

text: Dryopteris blanfordii cpDNA


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

tag: Namespace:HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: Streptococcus dysgalactiae subsp. equisimilis

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

text: GSC

text: public

text: Cryptococcus amylolentus

text: Cryptococcus amylolentus

text: Cryptococcus amylolentus


characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: Gordonibacter sp. Marseille-P2775

text: Gordonibacter sp. Marseille-P2775

characteristic: strain

text: Gordonibacter massiliensis genome


characteristic: External Id

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Streptococcus dysgalactiae subspecies equisimilis C161S01 sequencing


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: INSDC center name

text: public

text: Streptococcus dysgalactiae subsp. equisimilis C161


text: URMITE

characteristic: INSDC first public

text: public

text: Anaeromassilibacillus sp. Marseille-P3371

text: Anaeromassilibacillus timonensis genome


characteristic: INSDC last update

text: public

tag: Namespace:University of Michigan School of Public Health

text: ArrayExpress

text: ALDH- CD44- CD24+ cell

characteristic: cell type

text: human

text: Protocols: Normal (non-pathogenic) breast tissue was isolated from women undergoing voluntary reduction mammoplasty at the University of Michigan. The study protocol was approved by the University of Michigan Institutional Review Board. Breast tissue was mechanically and enzymatically digested as previously described (Dontu et al., 2003; Kakarala et al., 2010). Normal mammary cells were stained for CD44, and CD24 expression and ALDH activity accessed by the Aldefluor assay as described previously (Colacino et al., 2016) and analyzed or sorted on a Beckman Coulter MoFlo Astrios at the University of Michigan Flow Cytomtery core facility. Briefly, single mammary cells were first incubated with a lineage depletion cocktail that consisted of biotinylated antibodies targeted against CD45, HLA-DR, CD14, CD31, CD41, CD19, CD235a, CD56, CD3, CD16, and CD140b (all from eBioscience, except for CD140b (Biolegend) and CD41 (Acris)). Next, cells were stained with Alexafluor 750 tagged streptavidin, LIVE/DEAD Fixable Dead Cell Stain (Invitrogen), CD24 (Biolegend), CD44 (BD), and Aldefluor (Stem Cell Technology). Single color and isotype controls were included for compensation and gating purposes. Aldefluor-positive gating was based on DEAB (negative) controls. Flow cytometry data analysis was performed with FlowJo software v10.0.8. Total RNA was isolated from each cell population using the RNEasy Micro Kit (Qiagen) with on column DNase treatment. RNA concentration and quality was determined using a Nanodrop (Thermo) and Bioanalyzer (Agilent). Ribosomal RNAs were depleted using Ribominus (Life) and sequencing libraries were prepared with the SMARTer Stranded RNA-Seq kit (Clontech).

characteristic: description

text: normal

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: Homo sapiens


text: University of Michigan School of Public Health

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: ALDH- CD44- CD24+ cell

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: ALDH- CD44+ CD24- cell

text: human

characteristic: common name

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammary gland

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: ALDH+ cell

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens


Brevundimonas sp. RGd-12

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Brevundimonas sp. RGd-12

tag: Namespace:National Center for Genome Resources (NCGR)

text: Brevundimonas sp. RGd-1

text: Brevundimonas sp. RGd-1

characteristic: strain

text: Brevundimonas sp. RGd-1. a co-habitant with the extremophilic diatom strain, RGd-1


text: UNIVERSITY OF BERN

text: public

tag: Namespace:UNIVERSITY OF BERN

text: bloodstream and procyclic forms

characteristic: cell type

text: RNA-seq analysis performed performed culture derived slender, stumpy bloodstream forms and early, late procyclice forms

characteristic: description

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Transcriptome analysis of Trypanosoma brucei


text: Wellcome Trust Sanger Institute

text: public

characteristic: INSDC status

tag: Namespace:Wellcome Trust Sanger Institute

text: ArrayExpress

characteristic: cell line

text: mouse embryonic stem cell

text: house mouse

text: Protocols: Wildtype E14 mESC were cultured under standard culture conditions in Knockout DMEM containing 15% Fetal Calf Serum, 1x Penicillin-Streptomycin-Glutamine, 1x NEAA 2-mercaptoethanol and 1000U Leukemia Inhibitory Factor. Trypisnised single mESC suspension is passed through 30micron filter to remove and clumps. A 96-well plate containing lysis buffer (0.2% Triton, 1:20 RNAse inbhibitor, 10mM Oligo-dT30VN, 10mM dNTPs) was prepared. Spike-ins (ERCCs and SIRVs; final 1:1000,000 dilution) are subjected to different freeze-thaw cycles (seven conditions) and 1ul of spike-in mix per condition was added to each well column-wise. Single mES cells were FACS sorted (BD Influx; BD Biosciences) to each well (along with bulk controls). Subsequent steps (Lysis, RT, PCR amplification and DNA purification) was performed as described in Smart-Seq2 publication (Picelli et al Nature Protocol 2014). The single cell cDNA across the 96-well plate was quantified, diluted and libraries were made using Nextera XT DNA sample preparation kit (Illumina) utilising 96 dual barcoded indices. Library pooling was performed post AMPure XP beads (Agencourt Biosciences) clean up and sequenced on HiSeq2500 (v4) using paired end sequencing (75 or 125bp) at the Wellcome Trust Sequencing facility following Wellcome Trust Sequencing guidelines.

text: Serum + LIF condition

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Restricted access

characteristic: age

text: years

characteristic: age unit

text: Donor

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: Missing: Restricted access

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 7/26/11 0:00

text: CD1 Donor

text: healthy

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Donor

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: Missing: Restricted access

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: Missing: Restricted access

characteristic: sex

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 8/3/11 0:00

text: Day 8 CD1

characteristic: description

text: Recurrent Clostridium difficile infection

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 12/16/11 0:00

text: Day 16 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/17/11 0:00

text: Day 17 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 12/18/11 0:00

text: Day 18 (1) CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/18/11 0:00

text: Day 18 (2) CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 12/20/11 0:00

text: Day 20 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/21/11 0:00

text: Day 21 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 12/22/11 0:00

text: Day 22 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/23/11 0:00

text: Day 23 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 12/24/11 0:00

text: Day 24 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/25/11 0:00

text: Day 25 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Missing: Restricted access

text: years

text: Donor

text: UBERON:feces

text: Missing: Restricted access

text: UBERON:feces

text: UBERON:feces

text: 10/24/11 0:00

text: Donor 11

text: healthy

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Donor

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: Missing: Restricted access

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: Missing: Restricted access

characteristic: sex

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 8/4/11 0:00

text: Day 9 CD1

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 12/26/11 0:00

text: Day 26 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/27/11 0:00

text: Day 27 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 12/29/11 0:00

text: Day 29 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/30/11 0:00

text: Day 30 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 12/31/11 0:00

text: Day 31 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 1/1/12 0:00

text: Day 32 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 1/9/12 0:00

text: Day 40 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 1/14/12 0:00

text: Day 47 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 1/24/12 0:00

text: Day 55 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 1/30/12 0:00

text: Day 61 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Missing: Restricted access

text: years

text: Donor

text: UBERON:feces

text: Missing: Restricted access

text: UBERON:feces

text: UBERON:feces

text: 1/12/12 0:00

text: Donor 12

text: healthy

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Donor

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: Missing: Restricted access

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: Missing: Restricted access

characteristic: sex

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 8/5/11 0:00

text: Day 10 CD1

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 4/29/12 0:00

text: Day 151 CD4

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Restricted access

characteristic: age

text: years

characteristic: age unit

text: Donor

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: Missing: Restricted access

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 5/29/12 0:00

text: Donor 13

characteristic: description

text: healthy

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: Missing: Restricted access

text: human

text: Homo sapiens

text: Donor

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: Missing: Restricted access

text: UCSD

text: Stool

text: human gut metagenome

text: Missing: Restricted access

characteristic: title

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/6/11 0:00

text: Day 11 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Restricted access

characteristic: age

text: years

characteristic: age unit

text: Donor

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: Missing: Restricted access

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 10/10/12 0:00

text: Donor 14

characteristic: description

text: healthy

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: Missing: Restricted access

text: human

text: Homo sapiens

text: Donor

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: Missing: Restricted access

text: UCSD

text: Stool

text: human gut metagenome

text: Missing: Restricted access

characteristic: title

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/7/11 0:00

text: Day 12 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 7/26/11 0:00

text: Day 0 CD1

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/8/11 0:00

text: Day 13 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 11/12/11 0:00

text: Day -18 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/9/11 0:00

text: Day 14 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/2/11 0:00

text: Day 2 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/10/11 0:00

text: Day 15 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/3/11 0:00

text: Day 3 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/11/11 0:00

text: Day 16 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/8/11 0:00

text: Day 8 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/12/11 0:00

text: Day 17 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 1/24/12 0:00

text: Day 55 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Missing: Restricted access

text: years

text: Donor

text: UBERON:feces

text: Missing: Restricted access

text: UBERON:feces

text: UBERON:feces

text: 7/26/11 0:00

text: Donor CD1

text: healthy

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Donor

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: Missing: Restricted access

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: Missing: Restricted access

characteristic: sex

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 7/26/11 0:00

text: Day 0 CD1

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/13/11 0:00

text: Day 18 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2/6/12 0:00

text: Day 68 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/14/11 0:00

text: Day 19 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 4/29/12 0:00

text: Day 151 CD4

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/15/11 0:00

text: Day 20 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: Patient

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 7/29/12 0:00

text: pre-FMT

text: CD5 pre-FMT

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/16/11 0:00

text: Day 21 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: Patient

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 4/20/12 0:00

text: pre-FMT

text: CD6 pre-FMT

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/17/11 0:00

text: Day 22 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: Patient

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2/7/12 0:00

text: pre-FMT

text: CD7 pre-FMT

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/18/11 0:00

text: Day 23 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: Patient

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 4/2/12 0:00

text: pre-FMT

text: CD8 pre-FMT

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 8/19/11 0:00

text: Day 24 CD1

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

characteristic: extracted DNA avail now

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSD

text: TRUE

text: TRUE

characteristic: public

text: white

characteristic: race

text: UCSD

characteristic: sample location

text: Stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

text: Patient

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2/14/12 0:00

text: pre-FMT

text: CD9 pre-FMT

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: TRUE

text: white

text: UCSD

text: Stool

text: human gut metagenome

text: female

characteristic: title