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characteristic: ENA-CHECKLIST

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characteristic: External Id

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characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

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characteristic: ENA-FIRST-PUBLIC

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text: nasal swab

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text: Staphylococcus aureus

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text: Staphylococcus aureus

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

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text: Staphylococcus aureus

text: isolate NRC routine 02/2014

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text: Bos taurus

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text: spa-type t209

text: clinical isolate of S. aureus


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

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characteristic: ENA-CHECKLIST

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characteristic: ENA-CHECKLIST

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text: spa-type t030

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characteristic: ENA-FIRST-PUBLIC

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text: swab

characteristic: isolation source

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characteristic: ENA-FIRST-PUBLIC

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text: spa-type t651

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characteristic: External Id

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text: isolate NRC routine 02/2014

text: Germany

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characteristic: INSDC center name

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text: isolate NRC routine 02/2014

text: Germany

text: not provided

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characteristic: External Id

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characteristic: ENA-CHECKLIST

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characteristic: Submitter Id

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

text: Homo sapiens

text: nasal swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t034

text: clinical isolate of S. aureus


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

text: public

characteristic: collection date

text: Staphylococcus aureus

characteristic: common name

text: isolate NRC routine 02/2014

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: aspirate

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t683

text: clinical isolate of S. aureus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

characteristic: host health state

text: Bos taurus

text: swab

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t529

characteristic: strain

text: clinical isolate of S. aureus

characteristic: title


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

text: Bos taurus

characteristic: host scientific name

characteristic: isolate

text: swab

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: spa-type t2873

characteristic: serovar

text: clinical isolate of S. aureus


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: diseased

text: Homo sapiens

text: wound swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t026

text: clinical isolate of S. aureus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

characteristic: collection date

text: Staphylococcus aureus

characteristic: common name

text: isolate NRC routine 02/2014

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t032

text: clinical isolate of S. aureus


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

characteristic: host health state

text: Homo sapiens

text: mammilla swab

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t105

characteristic: strain

text: clinical isolate of S. aureus

characteristic: title


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: wound swab

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: spa-type t002

characteristic: serovar

text: clinical isolate of S. aureus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

text: Homo sapiens

text: vaginal swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t267

text: clinical isolate of S. aureus


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

text: public

characteristic: collection date

text: Staphylococcus aureus

characteristic: common name

text: isolate NRC routine 02/2014

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: skin swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t008

text: clinical isolate of S. aureus


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: diseased

characteristic: host health state

text: Homo sapiens

text: swab

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t8581

characteristic: strain

text: clinical isolate of S. aureus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: vaginal swab

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: spa-type t026

characteristic: serovar

text: clinical isolate of S. aureus


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

text: Homo sapiens

text: nasal swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t002

text: clinical isolate of S. aureus


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

text: public

characteristic: collection date

text: Staphylococcus aureus

characteristic: common name

text: isolate NRC routine 02/2014

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t014

text: clinical isolate of S. aureus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

characteristic: host health state

text: Homo sapiens

text: nasal swab

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t045

characteristic: strain

text: clinical isolate of S. aureus

characteristic: title


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood culture

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: spa-type t294

characteristic: serovar

text: clinical isolate of S. aureus


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

text: Homo sapiens

text: nasal swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t003

text: clinical isolate of S. aureus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

characteristic: collection date

text: Staphylococcus aureus

characteristic: common name

text: isolate NRC routine 02/2014

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: nasal swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t359

text: clinical isolate of S. aureus


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

characteristic: host health state

text: Homo sapiens

text: tracheal secretion

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t688

characteristic: strain

text: clinical isolate of S. aureus

characteristic: title


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: swab

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: spa-type t012

characteristic: serovar

text: clinical isolate of S. aureus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: diseased

text: Homo sapiens

text: wound swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t045

text: clinical isolate of S. aureus


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

text: public

characteristic: collection date

text: Staphylococcus aureus

characteristic: common name

text: isolate NRC routine 02/2014

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: urine

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t091

text: clinical isolate of S. aureus


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: diseased

characteristic: host health state

text: Homo sapiens

text: aspirate

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t032

characteristic: strain

text: clinical isolate of S. aureus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: axilla swab

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: spa-type t032

characteristic: serovar

text: clinical isolate of S. aureus


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: diseased

text: Homo sapiens

text: swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t032

text: clinical isolate of S. aureus


characteristic: ENA-CHECKLIST

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

text: public

characteristic: collection date

text: Staphylococcus aureus

characteristic: common name

text: isolate NRC routine 02/2014

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: throat swab

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t032

text: clinical isolate of S. aureus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

characteristic: host health state

text: Homo sapiens

text: tracheal secretion

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: spa-type t214

characteristic: strain

text: clinical isolate of S. aureus

characteristic: title


characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC first public

text: public

text: Staphylococcus aureus

text: isolate NRC routine 02/2014

text: Germany

text: not provided

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: nasal swab

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: spa-type t376

characteristic: serovar

text: clinical isolate of S. aureus


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF EAST ANGLIA, UK

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BGD

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF EAST ANGLIA, UK

characteristic: Submitter Id

text: Salmonella

characteristic: genus

text: Bangladesh

text: Human

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

characteristic: serotype

text: Salmonella

text: Salmonella Typhi Bangladesh

type: AMR curated data - CABBAGE

value: trimethoprim-sulfamethoxazole

value: susceptible

value: Salmonella enterica

value: ciprofloxacin

value: cephalothin

value: resistant

value: meropenem

value: chloramphenicol

value: tetracycline

value: azithromycin

value: ampicillin


E-MTAB-5935:Sample 1

characteristic: Characteristics [strain

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5935:Sample 1

tag: Namespace:London School of Hygiene and Tropical Medicine

text: ArrayExpress

characteristic: broker name

text: Protocols: Mycobacterium tuberculosis H37Rv was grown in 7H9 medium supplemented with 10% ADC under constant rotation at 37C. 2 ml of stationary phase cultures of desired strains were harvested by centrifugation, resuspended in 0.2 ml TE buffer and heat-killed at 80 C for 1 h. Genomic DNA was extracted using the Zymo ZR genomic DNA II and genomic DNA clean and concentrator kits, following the manufacturer’s instructions. Quality and quantity of genomic DNA was confirmed by agarose gel electrophoresis and spectrophotometry (NanoDrop). Sequencing libraries were constructed using the Epicentre Nextera DNA kit according to manufacturer’s instructions

characteristic: description

text: wild type strain 1

characteristic: individual

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: wild type phenotype

characteristic: phenotype

text: Mycobacterium tuberculosis

text: Sample 1


E-MTAB-5935:Sample 10

characteristic: External Id

text: London School of Hygiene and Tropical Medicine

characteristic: INSDC first public

text: public

text: E-MTAB-5935:Sample 10

text: ArrayExpress

text: DCSr mutant 9

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 10

characteristic: title


E-MTAB-5935:Sample 11

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-5935:Sample 11

text: ArrayExpress

text: DCSr mutant 10

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 11


E-MTAB-5935:Sample 12

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5935:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: DCSr mutant 11

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 12


E-MTAB-5935:Sample 2

characteristic: Characteristics [strain

text: public

text: E-MTAB-5935:Sample 2

text: ArrayExpress

text: DCSr mutant 1

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 2


E-MTAB-5935:Sample 3

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5935:Sample 3

text: ArrayExpress

text: DCSr mutant 2

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 3


E-MTAB-5935:Sample 4

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5935:Sample 4

text: ArrayExpress

text: DCSr mutant 3

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 4


E-MTAB-5935:Sample 5

text: public

text: E-MTAB-5935:Sample 5

text: ArrayExpress

characteristic: broker name

text: DCSr mutant 4

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 5


E-MTAB-5935:Sample 6

text: public

text: E-MTAB-5935:Sample 6

text: ArrayExpress

characteristic: description

text: DCSr mutant 5

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 6


E-MTAB-5935:Sample 7

text: public

text: E-MTAB-5935:Sample 7

text: ArrayExpress

text: DCSr mutant 6

characteristic: individual

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 7


E-MTAB-5935:Sample 8

text: public

text: E-MTAB-5935:Sample 8

text: ArrayExpress

text: DCSr mutant 7

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

characteristic: phenotype

text: Mycobacterium tuberculosis

text: Sample 8


E-MTAB-5935:Sample 9

characteristic: External Id

text: public

text: E-MTAB-5935:Sample 9

text: ArrayExpress

text: DCSr mutant 8

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: strain with resistance to D-cycloserine

text: Mycobacterium tuberculosis

text: Sample 9


characteristic: INSDC first public

text: public

tag: Namespace:'Boston Children''s Hospital, Harvard Medical School'

characteristic: age

text: Yucatan

characteristic: breed

text: ArrayExpress

text: pig

characteristic: common name

text: Protocols: Prior to euthanasia, anesthesia was induced using Telazol (4 mg/Kg) and Xylazine (2 mg/kg) followed by Propofol (3-7 mg/kg) and then maintained with Isoflurane (1-3 MAC) following intubation. Eyes were protected using an eye lubricant. Both limbs were shaved and scrubbed with Chlorhexidine and 70% alcohol until visibly clean, followed by a ten minute evaporation period. Hoofs were covered with unsterile gloves. Animals were then transferred into the adjacent operating room, placed supine on a heating mat, and secured on the operation table. Animal health and anesthesia depth were maintained by monitoring respiratory rate, oxygen saturation, electrocardiogram, blood pressure, and body temperature. The surgical limb and ipsilateral lower body were then scrubbed three times using Betadine. Hoofs were covered with a sterile glove and secured using a sterile elastic wrap. One layer of sterile towels was placed around the surgical area, followed by a layer of sterile drapes, leaving only the surgical limb exposed during the procedure. Animals were euthanized during deep anesthesia using an intravenous injection of a solution containing pentobarbital sodium and phenytoin sodium (Beuthanasia-D, 0.1ml/kg). Death was confirmed by the absence of blood pressure and heart sounds prior to obtaining the tissue samples. Cartilage samples were harvested from the medial femoral condyle for RNA isolation and histopathological analysis. The cartilage posterior to the frontal plane in the center of the medial femoral condyle was allocated to RNA isolation, while the cartilage immediately anterior of the central plane was allocated to histology. Biopsy punches of 5 mm diameter (Miltex, York, PA) were used to obtain 4-8 osteochondral biopsies from each animal. Osteochondral samples were rinsed in water and the cartilage was separated from the subchondral bone. Cartilage samples were immediately frozen in liquid nitrogen and stored at -80°C until RNA isolation. Forty-two adolescent Yucatan minipigs (Sinclair BioResources, Columbia MO) were allocated to unilateral ACL transection surgery (n=36) or no surgery (INTACT, n=6). Animals receiving ACL transection surgery were allocated to euthanasia and outcome assessment at 1 week (1W, n=18) or 4 weeks (4W, n=18) after surgery. Within each time-point 6 of 18 animals were allocated to no treatment following transection, 6 of 18 to immediate ligament reconstruction surgery, and 6 of 18 to immediate ligament repair surgery. A computer based random permutation stratified for sex determined each animal’s group allocation and side of unilateral surgery with an equal number of males and females in each group. While the animals were under anesthesia, a medial arthrotomy was performed and the fat pad partially resected to expose the ACL. The ACL was transected between the proximal and middle thirds of the ligament. A clinical exam was performed to verify complete ACL transection. In the animals assigned to receive ACL reconstruction surgery, a fresh-frozen bone-patellar-tendon-bone allograft, which was harvested from an age-, weight-, and sex-matched donor, was implanted as previously described (Murray and Fleming. AJSM 2013). In the animals assigned to ACL repair surgery, an extracellular matrix scaffold in combination with autologous blood was implanted as previously described (Murray and Fleming. AJSM 2013). Knees were thoroughly irrigated with 500 mL of normal saline following ACL transection in the group that did not receive further surgical treatment or following bone tunnel placement in those that received ACL reconstruction or repair. All incisions were closed in layers. No postoperative immobilization was used. Total RNA was extracted from the synovial membranes through homogenization, phenol-chloroform separation and on-column purification using the PureLink™ RNA Mini Kit (Life technologies, Carlsbad, CA). RNA samples were treated with DNAse I (PureLink™ DNase Set, Life technologies, Carlsbad, CA) and assessed with the 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA). The samples were then enriched for polyA+ messenger RNA, reverse transcribed with random hexamers, ligated with indexed adapters and amplified with 17 cycles of PCR using the TruSeq RNA Sample Preparation Kit v2 (Illumina, San Diego, CA).

text: Sus scrofa

text: Sus scrofa

text: cartilage

characteristic: organism part

text: medial condyle of femur

characteristic: sampling site

text: Sus scrofa

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

text: 'Boston Children''s Hospital, Harvard Medical School'

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Yucatan

text: ArrayExpress

text: pig

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: cartilage

text: medial condyle of femur

text: Sus scrofa

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

text: Yucatan

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: cartilage

text: medial condyle of femur

text: Sus scrofa

text: male


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

text: public

text: DTU2016_846_PRJ1048_Salmonella_monofasisk_2012_60_1039_1_1

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_847_PRJ1048_Salmonella_Typhimurium_2012_60_1044_1_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

text: public

text: DTU2016_848_PRJ1048_Salmonella_Typhimurium_2012_60_1062_1_1

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_849_PRJ1048_Salmonella_monofasisk_2012_60_1080_1_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_850_PRJ1048_Salmonella_monofasisk_2012_60_1087_1_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_851_PRJ1048_Salmonella_monofasisk_2012_60_1087_2_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_852_PRJ1048_Salmonella_Typhimurium_2012_60_1097_2_1

text: DTU-GE

text: DTU

text: No

text: Germany

text: Germany

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: DTU2016_853_PRJ1048_Salmonella_Typhimurium_2012_60_1097_1_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Germany

text: Germany

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_854_PRJ1048_Salmonella_monofasisk_2012_60_1146_1_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_855_PRJ1048_Salmonella_Typhimurium_2012_60_1307_1_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_856_PRJ1048_Salmonella_monofasisk_2012_60_1329_1_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_857_PRJ1048_Salmonella_Typhimurium_2012_60_1338_1_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Germany

characteristic: geo loc name

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Anas platyrhynchos

text: Yes

text: Ducks

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_858_PRJ1048_Salmonella_monofasisk_2012_60_1347_2_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: DTU2016_859_PRJ1048_Salmonella_monofasisk_2012_60_1401_1_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: Layers

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_860_PRJ1048_Salmonella_Typhimurium_2012_60_1414_1_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Germany

characteristic: geo loc name

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Anas platyrhynchos

text: Yes

text: Ducks

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_861_PRJ1048_Salmonella_monofasisk_2012_60_1415_1_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_862_PRJ1048_Salmonella_Typhimurium_2012_60_1427_3_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_863_PRJ1048_Salmonella_Typhimurium_2012_60_1432_1_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_864_PRJ1048_Salmonella_monofasisk_2012_60_145_1_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: DTU2016_865_PRJ1048_Salmonella_Typhimurium_2012_60_1459_1_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_866_PRJ1048_Salmonella_Typhimurium_2012_60_1533_1_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_867_PRJ1048_Salmonella_Typhimurium_2012_60_1537_1_1

text: DTU-GE

text: DTU

text: No

text: Germany

text: Germany

text: not provided

text: Anas platyrhynchos

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Ducks

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_868_PRJ1048_Salmonella_monofasisk_2012_60_1554_1_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_869_PRJ1048_Salmonella_monofasisk_2012_60_1562_1_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

text: Yes

text: Broilers

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_870_PRJ1048_Salmonella_Typhimurium_2012_60_1563_1_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Broilers

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: DTU2016_871_PRJ1048_Salmonella_Typhimurium_2012_60_1563_3_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: Broilers

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_872_PRJ1048_Salmonella_monofasisk_2012_60_1628_1_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Germany

characteristic: geo loc name

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_873_PRJ1048_Salmonella_Typhimurium_2012_60_1629_1_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_874_PRJ1048_Salmonella_Typhimurium_2012_60_1630_1_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: France

text: France

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_875_PRJ1048_Salmonella_Typhimurium_2012_60_1657_2_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_876_PRJ1048_Salmonella_monofasisk_2012_60_1660_1_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: DTU2016_877_PRJ1048_Salmonella_monofasisk_2012_60_1745_1_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_878_PRJ1048_Salmonella_monofasisk_2012_60_1756_1_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_879_PRJ1048_Salmonella_monofasisk_2012_60_1775_1_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_880_PRJ1048_Salmonella_Typhimurium_2012_60_1785_2_1

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

text: Germany

text: Germany

text: not provided

text: Anas platyrhynchos

text: Yes

text: Ducks

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: S. Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_881_PRJ1048_Salmonella_monofasisk_2012_60_1885_1_1

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: Yes

text: Pigs

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium


characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU2016_882_PRJ1048_Salmonella_monofasisk_2012_60_1885_2_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pigs

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Monophasic variant of S. Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Royal Botanic Gardens, Kew

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:Royal Botanic Gardens, Kew

characteristic: Submitter Id

unit: L

characteristic: amount or size of sample collected

text: wild

characteristic: biological status

text: Alexander S. T. Papadopulos, Royal Botanic Gardens, Kew.

characteristic: collected by

characteristic: collection date

text: thale cress

characteristic: common name

text: Arabidopsis thaliana, wild sample.

characteristic: description

characteristic: estimated size

unit: m

characteristic: geographic location (altitude)

text: United Kingdom

text: Snowdonia National Park, Wales

characteristic: geographic location (region and locality)

text: field

characteristic: growth facility

text: NA: Wild

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

characteristic: organism

text: Thale cress

characteristic: organism common name

text: Mature

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Leaf

characteristic: plant structure

text: diploid

characteristic: ploidy

text: NA: Wild

characteristic: propagation

text: Hand / scissors

characteristic: sample collection device or method

text: healthy

characteristic: sample health state

text: 10:00 UTC

characteristic: sampling time point

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Gardens, Kew

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: wild

characteristic: biological status

characteristic: collected by

characteristic: collection date

text: Arabidopsis lyrata (ssp. petraea), wild sample.

characteristic: description

characteristic: estimated size

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Snowdonia National Park, Wales

text: field

text: NA: Wild

text: Arabidopsis lyrata subsp. petraea

text: Rock-cress

text: Mature

text: soil

text: Leaf

text: diploid

text: NA: Wild

text: Hand / scissors

text: healthy

text: 11:00 UTC

text: Arabidopsis lyrata subsp. petraea

text: petraea

characteristic: subspecific genetic lineage name

text: Subspecies (contested)

characteristic: subspecific genetic lineage rank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Malaghan Institute of Medical Research

characteristic: INSDC center name

text: public

tag: Namespace:Malaghan Institute of Medical Research

text: Jodie Chandler, Mali Camberis

text: SAMEA104069026, SAMEA104069024, SAMEA104069025, SAMEA104069027

text: Digitally-pooled mixture of L5-adult Nippostrongylus brasiliensis gDNA. See component_samples field for sub-sample descriptions.

characteristic: dev stage

text: New Zealand

text: Rattus norvegicus

characteristic: host scientific name

text: 41.2908665 S, 174.7685329 E

characteristic: lat lon

text: Nippostrongylus brasiliensis

characteristic: organism

text: Nippostrongylus brasiliensis

text: MIMR

characteristic: strain

text: NbL5, pooled (ONT C/D/E/F)

characteristic: title


text: KYUNG HEE UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:KYUNG HEE UNIVERSITY

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: fecal bacterial metagenome

characteristic: description

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KYUNG HEE UNIVERSITY

text: public

text: house mouse

text: fecal phage metagenome

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRAUNHOFER IGB

text: public

tag: Namespace:FRAUNHOFER IGB

text: human

text: Homo sapiens

text: Homo sapiens

text: rawReads


characteristic: INSDC center name

text: public

tag: Namespace:Institute of Animal Nutrition and Botanics

characteristic: collection date

text: cattle

text: rumen

characteristic: environment (biome)

text: host-associated

characteristic: environment (feature)

text: papillae

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Bos taurus

text: Sugar Hay

characteristic: project name

text: Bos taurus

text: pyrosequencing

characteristic: sequencing method

text: sample


text: Institute of Animal Nutrition and Botanics

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: cattle

characteristic: common name

text: rumen

text: host-associated

text: papillae

text: Austria

text: host-associated

text: metagenome

text: Bos taurus

characteristic: organism

text: Sugar Hay

text: Bos taurus

text: pyrosequencing

text: sample

characteristic: title


text: Mouse Spleen

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Mouse Spleen

characteristic: phenotype

text: Mus musculus

characteristic: subject id


Camellia sinensis

text: ANHUI AGRICULTURAL UNIVERSITY

characteristic: INSDC first public

text: public

text: Camellia sinensis

tag: Namespace:ANHUI AGRICULTURAL UNIVERSITY

characteristic: collection date

text: deciduous woodland

characteristic: environment (biome)

text: mountain

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Camellia sinensis

text: plant-associated

characteristic: plant-associated environmental package

text: tea plant BAC

characteristic: project name

text: Camellia sinensis

characteristic: sequencing method

text: tea plant BAC


text: Mouse

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mouse

text: Mus musculus

characteristic: title


characteristic: External Id

text: academisch medisch centrum

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: VNM

tag: Namespace:academisch medisch centrum

text: Escherichia

characteristic: genus

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Chicken

characteristic: host

text: not provided

characteristic: host health state

characteristic: isolate

text: Feces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: broth dilution

value: mg/L

value: Vitek

value: Escherichia coli

value: trimethoprim

value: ceftazidime

value: cefoxitin

value: cefotaxime

value: e-test

value: amoxicillin-clavulanic acid

value: gentamicin

value: piperacillin-tazobactam


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Chicken

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: resistant

value: meropenem

value: susceptible

value: trimethoprim-sulfamethoxazole

value: imipenem

value: ciprofloxacin


text: academisch medisch centrum

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: VNM

characteristic: SRA accession

text: Escherichia

text: Viet Nam

text: Chicken

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: broth dilution

value: mg/L

value: colistin

value: ampicillin


text: academisch medisch centrum

text: public

text: VNM

characteristic: Submitter Id

text: Escherichia

text: Viet Nam

text: Chicken

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: ceftazidime

value: Vitek

value: Escherichia coli

value: trimethoprim


characteristic: External Id

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Chicken

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

characteristic: title

value: e-test

value: amoxicillin-clavulanic acid

value: cefotaxime

value: cefoxitin

value: gentamicin


text: academisch medisch centrum

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Chicken

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: resistant

value: trimethoprim-sulfamethoxazole

value: piperacillin-tazobactam

value: susceptible

value: meropenem


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

characteristic: genus

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Chicken

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: broth dilution

value: mg/L

value: ciprofloxacin

value: imipenem


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Chicken

characteristic: host

text: not provided

characteristic: host health state

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: Vitek

value: Escherichia coli

value: ceftazidime

value: colistin

value: ampicillin


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Chicken

text: not provided

characteristic: isolate

text: Feces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: cefoxitin

value: e-test

value: cefotaxime

value: amoxicillin-clavulanic acid

value: trimethoprim


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: susceptible

value: resistant

value: piperacillin-tazobactam

value: trimethoprim-sulfamethoxazole


characteristic: ENA-LAST-UPDATE

text: academisch medisch centrum

characteristic: INSDC last update

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: broth dilution

value: mg/L


text: academisch medisch centrum

text: public

characteristic: INSDC status

text: VNM

characteristic: SRA accession

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: Vitek

value: imipenem

value: meropenem

value: gentamicin

value: ciprofloxacin


text: academisch medisch centrum

text: public

text: VNM

characteristic: Submitter Id

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: Escherichia coli

value: colistin

value: ceftazidime

value: cefoxitin

value: ampicillin


characteristic: External Id

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

characteristic: title

value: trimethoprim

value: cefotaxime

value: amoxicillin-clavulanic acid

value: susceptible

value: e-test


text: academisch medisch centrum

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: broth dilution

value: resistant

value: trimethoprim-sulfamethoxazole

value: piperacillin-tazobactam


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

characteristic: genus

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: mg/L

value: Vitek

value: imipenem

value: gentamicin


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

characteristic: host

text: not provided

characteristic: host health state

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: Escherichia coli

value: colistin

value: ciprofloxacin

value: meropenem

value: ceftazidime


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

characteristic: isolate

text: Feces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: cefotaxime

value: trimethoprim

value: amoxicillin-clavulanic acid

value: cefoxitin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: broth dilution

value: susceptible

value: ampicillin

value: e-test


characteristic: ENA-LAST-UPDATE

text: academisch medisch centrum

characteristic: INSDC last update

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: mg/L

value: Vitek

value: resistant

value: trimethoprim-sulfamethoxazole

value: piperacillin-tazobactam


text: academisch medisch centrum

text: public

characteristic: INSDC status

text: VNM

characteristic: SRA accession

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: Escherichia coli

value: imipenem

value: gentamicin

value: ciprofloxacin

value: colistin


text: academisch medisch centrum

text: public

text: VNM

characteristic: Submitter Id

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: cefotaxime

value: trimethoprim

value: amoxicillin-clavulanic acid

value: meropenem

value: ceftazidime


characteristic: External Id

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

characteristic: title

value: EUCAST

value: broth dilution

value: susceptible

value: cefoxitin

value: ampicillin


text: academisch medisch centrum

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: mg/L

value: Vitek

value: resistant

value: trimethoprim-sulfamethoxazole


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

characteristic: genus

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: Escherichia coli

value: piperacillin-tazobactam

value: imipenem

value: gentamicin


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

characteristic: host

text: not provided

characteristic: host health state

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: ciprofloxacin

value: e-test

value: colistin

value: cefotaxime

value: trimethoprim


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Chicken

text: not provided

characteristic: isolate

text: Feces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: broth dilution

value: ceftazidime

value: amoxicillin-clavulanic acid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Chicken

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: mg/L

value: susceptible

value: cefoxitin

value: ampicillin

value: meropenem


characteristic: ENA-LAST-UPDATE

text: academisch medisch centrum

characteristic: INSDC last update

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: Vitek

value: resistant

value: Escherichia coli

value: piperacillin-tazobactam


text: academisch medisch centrum

text: public

characteristic: INSDC status

text: VNM

characteristic: SRA accession

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: trimethoprim-sulfamethoxazole

value: imipenem

value: ciprofloxacin

value: e-test


text: academisch medisch centrum

text: public

text: VNM

characteristic: Submitter Id

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: colistin

value: trimethoprim

value: gentamicin


characteristic: External Id

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

characteristic: title

value: broth dilution

value: mg/L

value: amoxicillin-clavulanic acid

value: ceftazidime

value: cefotaxime


text: academisch medisch centrum

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: Vitek

value: susceptible

value: meropenem

value: cefoxitin

value: ampicillin


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

characteristic: genus

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Chicken

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: Escherichia coli

value: resistant

value: piperacillin-tazobactam


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Chicken

characteristic: host

text: not provided

characteristic: host health state

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: CLSI

value: disk diffusion

value: mm

value: chloramphenicol

value: tetracycline

value: ciprofloxacin

value: trimethoprim-sulfamethoxazole

value: amikacin

value: ceftriaxone