E-MTAB-5236:Sample 5

text: public

text: E-MTAB-5236:Sample 5

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: ecotype

text: gene knock out

text: DCC1 mutant

characteristic: genotype

text: cultured on shoot-induction medium

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: plant callus

text: Arabidopsis thaliana

text: Sample 5


E-MTAB-5236:Sample 6

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5236:Sample 6

tag: Namespace:College of Life Sciences, Shandong Agricultural University

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

text: thale cress

characteristic: common name

text: Protocols: Three biological repeats of the wild type (Col-0-A, Col-0-B and Col-0-C) and the mutant dcc1 (dcc1-A, dcc1-B and dcc1-C) after culture on shoot-induction medium for 16 days were used for RNA sequencing. Total RNAs were isolated from the calli of wild type Col-0 and the mutant dcc1 with TRI reagent (Sigma, catalog number T9424). The mRNA was enriched by Ribo-ZeroTM Magnetic Kit (Epicentre), and fragmented into short fragments using fragmentation buffer and reverse transcripted into cDNA with random primers. Second-strand cDNA were synthesized by DNA polymerase I. Then the cDNA fragments were purified with QiaQuick PCR extraction kit, end repaired, poly(A) added, and ligated to Illumina sequencing adapters. The ligation products were size selected by agarose gel electrophoresis, and amplified by PCR to construct the RNA-seq llibraries.

text: gene knock out

characteristic: genetic modification

text: DCC1 mutant

text: cultured on shoot-induction medium

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: plant callus

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 6

characteristic: title


text: LSA-DISTAL-UNIBO

text: public

characteristic: collection date

text: Ceca LAB in drinking water control 14 d

characteristic: description

text: chicken

characteristic: environment (biome)

text: ceca content

characteristic: environment (feature)

text: ceca content

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

unit: DD

characteristic: geographic location (latitude)

text: 44°26'4272 N

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA LAB in drinking water

characteristic: project name

text: metagenome

text: shotgun

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ceca LAB in drinking water control 14 d

text: chicken

text: ceca content

text: ceca content

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA LAB in drinking water

text: metagenome

text: shotgun


River Corrib Sample 1

text: Virginia Commonwealth University

text: public

text: River Corrib Sample 1

text: Large river biome

characteristic: biome

text: Fri Sep 21 2012 00:00:00 GMT+0100 (BST)

characteristic: collection date

text: Sat Dec 30 1899 01:00:00 GMT-0000 (GMT)

characteristic: collection time

text: Ireland

characteristic: country

text: water

characteristic: env package

text: watercourse

characteristic: feature

characteristic: latitude

text: Galway

characteristic: location

characteristic: longitude

text: fresh water

characteristic: material

text: riverine metagenome

characteristic: organism

characteristic: sample id

text: River Corrib Sample 1

characteristic: sample name

text: riverine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)

characteristic: title

type: has member


text: KI-BN

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: synthetic construct

characteristic: organism

text: synthetic construct


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute of Food Research

text: public

tag: Namespace:Institute  of Food Research

characteristic: collection date

text: preterm no supplementation

characteristic: description

text: gut

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: feces metagenome

text: ELBW infant

characteristic: project name

text: feces metagenome

text: 16S rRNA gene sequencing

characteristic: sequencing method

text: preterm no supplementation


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Food Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: preterm with supplementation

text: gut

text: gut

text: feces

text: United Kingdom

text: human-gut

text: metagenome

text: feces metagenome

text: ELBW infant

text: feces metagenome

text: 16S rRNA gene sequencing

text: preterm with supplementation

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute of Food Research

text: public

characteristic: Submitter Id

characteristic: collection date

text: term baby

characteristic: description

text: gut

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

text: United Kingdom

text: human-gut

text: metagenome

text: feces metagenome

characteristic: organism

text: ELBW infant

text: feces metagenome

text: 16S rRNA gene sequencing

text: term baby


text: UMCU

text: public

text: house mouse

characteristic: common name

text: Kidney cells expression high Troy, sample 1

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: UMCU

text: public

text: house mouse

text: Kidney cells expression high Troy, sample 2

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: UMCU

text: public

text: house mouse

text: Kidney cells expression medium Troy, sample 1

text: Mus musculus

text: Mus musculus


text: UMCU

characteristic: INSDC center name

text: public

text: house mouse

text: Kidney cells expression medium Troy, sample 2

text: Mus musculus

text: Mus musculus


text: UMCU

characteristic: INSDC first public

text: public

text: house mouse

text: Kidney cells expression low Troy, sample 1

text: Mus musculus

text: Mus musculus


text: UMCU

characteristic: INSDC last update

text: public

text: house mouse

text: Kidney cells expression low Troy, sample 2

text: Mus musculus

text: Mus musculus


text: LSA-DISTAL-UNIBO

text: public

characteristic: INSDC status

text: Ceca LAB in drinking water low dose 35 d

text: chicken

text: ceca content

text: ceca content

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA LAB in drinking water

characteristic: project name

text: metagenome

text: shotgun

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WAGENINGEN UNIVERSITY

text: public

characteristic: SRA accession

tag: Namespace:WAGENINGEN UNIVERSITY

characteristic: Submitter Id

text: bovine rumen fluid sample

characteristic: description

text: metagenome

text: metagenome

text: bacterial or archaeal 16S rRNA

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: chicken

characteristic: environment (biome)

text: ceca content

characteristic: environment (feature)

text: ceca content

text: Italy

text: 44°26'4272 N

text: 44°26'4272 N

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: LSA LAB in drinking water

text: metagenome

text: shotgun


text: LSA-DISTAL-UNIBO

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ceca LAB in drinking water high dose 35 d

text: chicken

text: ceca content

text: ceca content

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA LAB in drinking water

text: metagenome

text: shotgun


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WATERLOO

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF WATERLOO

characteristic: Submitter Id

text: Indian River County

characteristic: county

characteristic: date sampled

text: 16S rRNA gene fragment V3-V4 from mosquito gut samples

characteristic: description

text: Vero Beach

characteristic: location

text: half raft

text: High

characteristic: nutrient level

text: insect gut metagenome

text: A

text: insect gut metagenome

text: Cx. nigripalpus

characteristic: species

text: eggs

characteristic: stage

characteristic: tank

text: Effects of organic amendments on microbiota associated with the Culex nigripalpus mosquito vector

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Indian River County

text: Vero Beach

text: half raft

text: Low

text: insect gut metagenome

characteristic: organism

text: A

text: insect gut metagenome

text: Cx. nigripalpus

text: eggs


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WATERLOO

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Indian River County

text: Vero Beach

text: High

text: insect gut metagenome

text: A

text: insect gut metagenome

text: Cx. nigripalpus

text: 1st instar


text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

characteristic: county

characteristic: date sampled

characteristic: description

text: Vero Beach

characteristic: location

text: Low

text: insect gut metagenome

text: A

text: insect gut metagenome

text: Cx. nigripalpus

text: 1st instar


text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

text: Vero Beach

text: Low

characteristic: nutrient level

text: insect gut metagenome

text: B

text: insect gut metagenome

text: Cx. nigripalpus

characteristic: species

text: 3rd instar

characteristic: stage

characteristic: tank


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

text: public

text: Indian River County

text: Vero Beach

text: High

text: insect gut metagenome

text: B

text: insect gut metagenome

text: Cx. nigripalpus

text: 3rd instar

characteristic: title


text: UNIVERSITY OF WATERLOO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Indian River County

text: Vero Beach

text: Low

text: insect gut metagenome

characteristic: organism

text: B

text: insect gut metagenome

text: Cx. nigripalpus

text: 2nd instar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WATERLOO

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Indian River County

text: Vero Beach

text: High

text: insect gut metagenome

text: B

text: insect gut metagenome

text: Cx. nigripalpus

text: 2nd instar


text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

characteristic: county

characteristic: date sampled

characteristic: description

text: Vero Beach

characteristic: location

text: High

text: insect gut metagenome

text: B

text: insect gut metagenome

text: Cx. nigripalpus

text: Pupae


text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

text: Vero Beach

text: Low

characteristic: nutrient level

text: insect gut metagenome

text: B

text: insect gut metagenome

text: Cx. nigripalpus

characteristic: species

text: Pupae

characteristic: stage

characteristic: tank


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

text: public

text: Indian River County

text: Vero Beach

text: Low

text: insect gut metagenome

text: B

text: insect gut metagenome

text: Cx. nigripalpus

text: female adult

characteristic: title


text: UNIVERSITY OF WATERLOO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Indian River County

text: Vero Beach

text: Low

text: insect gut metagenome

characteristic: organism

text: C

text: insect gut metagenome

text: Cx. nigripalpus

text: female adult


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WATERLOO

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Indian River County

text: Vero Beach

text: High

text: insect gut metagenome

text: C

text: insect gut metagenome

text: Cx. nigripalpus

text: female adult


text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

characteristic: county

characteristic: date sampled

characteristic: description

text: Vero Beach

characteristic: location

text: Low

characteristic: nutrient level

text: insect gut metagenome

text: D

text: insect gut metagenome

text: Cx. nigripalpus

characteristic: species

text: 3rd instar

characteristic: stage

characteristic: tank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Indian River County

text: Vero Beach

text: High

text: insect gut metagenome

characteristic: organism

text: D

text: insect gut metagenome

text: Cx. nigripalpus

text: Pupae

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

characteristic: county

characteristic: date sampled

text: Vero Beach

text: Low

text: insect gut metagenome

text: D

text: insect gut metagenome

text: Cx. nigripalpus

text: Pupae


text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

characteristic: description

text: Vero Beach

characteristic: location

text: High

characteristic: nutrient level

text: insect gut metagenome

text: D

text: insect gut metagenome

text: Cx. nigripalpus

characteristic: species

text: 3rd instar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

text: Vero Beach

text: Low

text: insect gut metagenome

text: D

text: insect gut metagenome

text: Cx. nigripalpus

text: 2nd instar

characteristic: stage

characteristic: tank


text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Indian River County

text: Vero Beach

text: insect gut metagenome

text: E

text: insect gut metagenome

text: Cx. coronator

text: 3rd instar

text: Temporal and species variations of microbiota associated with the immature stages of two Florida Culex mosquitos


text: UNIVERSITY OF WATERLOO

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Indian River County

text: Vero Beach

text: insect gut metagenome

characteristic: organism

text: E

text: insect gut metagenome

text: Cx. nigripalpus

text: female adult

text: Geographic differences in mosquito microbiota

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

characteristic: county

characteristic: date sampled

text: Vero Beach

text: insect gut metagenome

text: F

text: insect gut metagenome

text: Cx. coronator

text: 3rd instar


text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

characteristic: description

text: Vero Beach

characteristic: location

text: insect gut metagenome

text: F

text: insect gut metagenome

text: Cx. coronator

characteristic: species

text: 2nd instar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

text: Vero Beach

text: insect gut metagenome

text: F

text: insect gut metagenome

text: Cx. nigripalpus

text: 3rd instar

characteristic: stage


text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Indian River County

text: Vero Beach

text: insect gut metagenome

text: F

text: insect gut metagenome

text: Cx. nigripalpus

text: 2nd instar


text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Indian River County

text: Vero Beach

text: insect gut metagenome

text: F

text: insect gut metagenome

text: Cx. nigripalpus

text: 1st instar


text: UNIVERSITY OF WATERLOO

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Indian River County

text: Vero Beach

text: insect gut metagenome

text: G

text: insect gut metagenome

text: Cx. nigripalpus

text: 1st instar


text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

text: Vero Beach

text: insect gut metagenome

characteristic: organism

text: G

text: insect gut metagenome

text: Cx. nigripalpus

text: 3rd instar

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

text: Vero Beach

text: insect gut metagenome

text: G

text: insect gut metagenome

text: Cx. nigripalpus

text: Pupae


text: UNIVERSITY OF WATERLOO

text: public

text: Manatee county

characteristic: county

characteristic: date sampled

text: B1P (-82.5526666666666, 27.64048333)

text: insect gut metagenome

text: G

text: insect gut metagenome

text: Cx. nigripalpus

text: Adults


text: UNIVERSITY OF WATERLOO

text: public

text: Manatee county

characteristic: description

text: B1P (-82.5526666666666, 27.64048333)

characteristic: location

text: insect gut metagenome

text: H

text: insect gut metagenome

text: Cx. nigripalpus

text: Adults


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WATERLOO

text: public

text: Manatee county

text: B1GF (-82.49683333 27.62796667)

text: insect gut metagenome

text: H

text: insect gut metagenome

text: Cx. nigripalpus

characteristic: species

text: Adults


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WATERLOO

text: public

text: Indian River County

text: Vero Beach

text: insect gut metagenome

text: H

text: insect gut metagenome

text: Cx. coronator

text: 3rd instar

characteristic: stage

characteristic: tank


text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Manatee county

text: B1GF(-82.49683333 27.62796667)

text: insect gut metagenome

text: H

text: insect gut metagenome

text: Cx. nigripalpus

text: Adults


text: UNIVERSITY OF WATERLOO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: insect gut metagenome

text: insect gut metagenome

text: Non-template controls for mosquito studies


characteristic: ENA-LAST-UPDATE

text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

characteristic: organism

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

text: public

tag: Namespace:WEIZMANN INSTITUE OF SCIENCE

text: baker's yeast

text: MATa his3D1 leu2D0 met15D0 ura3D0 Hsp12-GFP::HISMX6

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UNIVERSITY OF TORONTO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF TORONTO

text: Lactobacillus plantarum

text: Lactobacillus plantarum

text: Lactobacillus Plantarum A6


text: Korea Food Research Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Korea Food Research Institute

characteristic: Submitter Id

text: HiSeq

characteristic: description

text: human gut metagenome

text: human gut metagenome


characteristic: ENA-LAST-UPDATE

text: Auckland University of Technology

text: public

tag: Namespace:Auckland University of Technology

text: aerosol metagenome

text: aerosol metagenome

text: 16S amplicon from helicopter collected aerosol samples


text: CICESE

text: public

characteristic: collection date

text: marine subtidal rocky reef biome

characteristic: environment (biome)

text: cliff

characteristic: environment (feature)

text: sea sand

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CICESE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: marine subtidal rocky reef biome

text: plain

text: sea sand

text: Mexico

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: sediment

text: Illumina

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Institute for Molecular Biosciences

text: public

tag: Namespace:Institute for Molecular Biosciences

characteristic: Submitter Id

text: BRAEMBL

characteristic: broker name

characteristic: collection date

text: Nucleic acid sequences and peptide sequences from venom-gland preparations from the spider Hypochilus Sp.

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: Siskiyou County

characteristic: geographic location (region and locality)

characteristic: lat lon

characteristic: library reads sequenced

text: Hypochilus sp. SGP-2016

text: Aerobe

characteristic: relationship to oxygen

text: All spiders used for complementary DNA (cDNA) library construction were first anesthetized using CO2, frozen at -80°C for 10 min, and then dissected at 4°C. To access the venom gland, the chelicerae were first removed from the base of the structure (towards the carapace). Once separated, each chelicera was individually cut from the ventral side up to the base of the fang in order to approach the venom gland from underneath. The cheliceral muscle that surrounds the venom gland was detached to expose the isolated venom gland. Dissected venom glands were placed immediately in TRIzol® reagent (Invitrogen) to be processed

characteristic: sample material processing

text: Hypochilus sp. SGP-2016

text: Hypochilus sp


Bordetella pseudohinzii BH3701

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Bordetella pseudohinzii BH3701

tag: Namespace:Tropical Infectious Diseases Research and Education Centre

text: Bordetella pseudohinzii BH370

text: Malaysia

characteristic: isolate

text: Bordetella pseudohinzii

text: Bordetella pseudohinzii

text: ICR mouse

characteristic: specimen voucher

text: Bordetella pseudohinzii BH370


characteristic: ENA-LAST-UPDATE

text: LSA-DISTAL-UNIBO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ceca LAB in drinking water control 35 d

text: chicken

characteristic: environment (biome)

text: ceca content

characteristic: environment (feature)

text: ceca content

characteristic: environment (material)

text: Italy

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: LSA LAB in drinking water

characteristic: project name

text: metagenome

text: shotgun

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UPSC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Picea wilsonii

characteristic: common name

text: Voucher 63848

characteristic: description

text: Picea wilsonii

text: Picea wilsonii

text: Picea wilsonii cultivated at Royal Botanic Garden Kew UK


characteristic: ENA-LAST-UPDATE

text: UMCU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: RNAseq from a kidney organoid culture, sample 1

text: Mus musculus

text: Mus musculus


text: UMCU

text: public

text: house mouse

text: RNAseq from a kidney organoid culture, sample 2

text: Mus musculus

text: Mus musculus


text: UMCU

text: public

text: house mouse

text: RNAseq from a kidney organoid culture, sample 3

text: Mus musculus

text: Mus musculus


text: UMCU

text: public

text: house mouse

text: RNAseq from a kidney, sample 1

text: Mus musculus

text: Mus musculus


text: UMCU

text: public

text: house mouse

text: RNAseq from a kidney, sample 2

text: Mus musculus

text: Mus musculus


text: UMCU

text: public

text: house mouse

text: RNAseq from a kidney, sample 3

text: Mus musculus

text: Mus musculus


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

characteristic: organism

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

tag: Namespace:ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

text: dog

text: RNAseq of testes.

text: Canis lupus familiaris

text: Canis lupus familiaris

text: male

characteristic: sex

text: testes

characteristic: tissue type

text: Transcriptomics of morphologically diverse dog breeds

characteristic: title

text: French bulldog

characteristic: variety


characteristic: ENA-LAST-UPDATE

text: ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: dog

characteristic: common name

text: RNAseq of testes.

characteristic: description

text: Canis lupus familiaris

text: Canis lupus familiaris

text: male

text: testes

text: Bulldog


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: dog

text: RNAseq of testes.

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: male

text: testes

text: Italian greyhound


characteristic: ENA-CHECKLIST

text: public

text: dog

text: RNAseq of testes.

text: Canis lupus familiaris

text: Canis lupus familiaris

text: male

text: testes

text: Whippet


characteristic: ENA-FIRST-PUBLIC

text: public

text: dog

text: RNAseq of testes.

text: Canis lupus familiaris

text: Canis lupus familiaris

text: male

text: testes

text: Papillon


characteristic: External Id

text: public

text: dog

text: RNAseq of testes.

text: Canis lupus familiaris

text: Canis lupus familiaris

text: male

text: testes

text: Pug


text: public

text: dog

text: RNAseq of testes.

text: Canis lupus familiaris

text: Canis lupus familiaris

text: male

characteristic: sex

text: testes

text: Yorkshire terrier


text: public

text: dog

text: RNAseq of testes.

text: Canis lupus familiaris

text: Canis lupus familiaris

text: male

text: testes

characteristic: tissue type

text: Cavalier King Charles spaniel


text: Enterobacter cloacae

characteristic: ArrayExpress-Species

text: Enterobacter cloacae

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Enterobacter cloacae

text: Enterobacter cloacae

text: DNA

characteristic: sample description

text: Enterobacter cloacae

text: Enterobacter cloacae

characteristic: strain

characteristic: title


text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans

text: DNA

text: Achromobacter xylosoxidans

text: Achromobacter xylosoxidans


text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Acinetobacter baumannii

characteristic: common name

text: Acinetobacter baumannii

text: DNA

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Enterobacter kobei

text: Enterobacter kobei

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: Submitter Id

text: Enterobacter kobei

text: Enterobacter kobei

characteristic: organism

text: DNA

text: Enterobacter kobei

text: Enterobacter kobei


text: Acinetobacter radioresistens

text: Acinetobacter radioresistens

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: Acinetobacter radioresistens

text: Acinetobacter radioresistens

text: DNA

text: Acinetobacter radioresistens

text: Acinetobacter radioresistens


text: Klebsiella pneumoniae

characteristic: ArrayExpress-Species

text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: DNA

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Escherichia coli

text: Escherichia coli

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: DNA

text: Escherichia coli

text: Escherichia coli


text: Wautersiella falsenii

text: Wautersiella falsenii

text: SC

text: public

text: Wautersiella falsenii

text: Empedobacter falsenii

text: DNA

characteristic: sample description

text: Empedobacter falsenii

text: Wautersiella falsenii


text: Stenotrophomonas maltophilia

text: Stenotrophomonas maltophilia

text: SC

text: public

text: Stenotrophomonas maltophilia

text: Stenotrophomonas maltophilia

text: DNA

text: Stenotrophomonas maltophilia

text: Stenotrophomonas maltophilia

characteristic: strain


text: Pseudomonas stutzeri

text: Pseudomonas stutzeri

text: SC

text: public

text: Pseudomonas stutzeri

text: Pseudomonas stutzeri

text: DNA

text: Pseudomonas stutzeri

text: Pseudomonas stutzeri

characteristic: title


text: Enterobacter asburiae

text: Enterobacter asburiae

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Enterobacter asburiae

text: Enterobacter asburiae

text: DNA

text: Enterobacter asburiae

text: Enterobacter asburiae


text: Acinetobacter junii

text: Acinetobacter junii

text: SC

characteristic: INSDC center name

text: public

text: Acinetobacter junii

text: Acinetobacter junii

text: DNA

text: Acinetobacter junii

text: Acinetobacter junii


text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: SC

characteristic: INSDC first public

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: DNA

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Proteus mirabilis

text: Proteus mirabilis

text: SC

characteristic: INSDC last update

text: public

text: Proteus mirabilis

text: Proteus mirabilis

text: DNA

text: Proteus mirabilis

text: Proteus mirabilis


text: SMU

text: public

characteristic: INSDC status

characteristic: averagelengthandsd

text: feces metagenome

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


text: Pseudomonas fulva

text: Pseudomonas fulva

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Pseudomonas fulva

characteristic: common name

text: Pseudomonas fulva

characteristic: organism

text: DNA

text: Pseudomonas fulva

text: Pseudomonas fulva


text: Serratia marcescens

characteristic: ArrayExpress-Species

text: Serratia marcescens

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: Serratia marcescens

text: Serratia marcescens

text: DNA

characteristic: sample description

text: Serratia marcescens

text: Serratia marcescens

characteristic: strain

characteristic: title


text: Serratia fonticola

text: Serratia fonticola

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Serratia fonticola

text: Serratia fonticola

text: DNA

text: Serratia fonticola

text: Serratia fonticola


text: Pseudomonas putida

text: Pseudomonas putida

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Pseudomonas putida

text: Pseudomonas putida

text: DNA

text: Pseudomonas putida

text: Pseudomonas putida


text: Acinetobacter nosocomialis

text: Acinetobacter nosocomialis

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Acinetobacter nosocomialis

text: Acinetobacter nosocomialis

text: DNA

text: Acinetobacter nosocomialis

text: Acinetobacter nosocomialis


text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: SC

text: public

characteristic: SRA accession

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: DNA

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Pseudomonas jinjuensis

text: Pseudomonas jinjuensis

text: SC

text: public

characteristic: Submitter Id

text: Pseudomonas jinjuensis

text: Pseudomonas jinjuensis

text: DNA

text: Pseudomonas jinjuensis

text: Pseudomonas jinjuensis


text: Acinetobacter calcoaceticus

text: Acinetobacter calcoaceticus

text: SC

text: public

text: Acinetobacter calcoaceticus

characteristic: common name

text: Acinetobacter calcoaceticus

text: DNA

text: Acinetobacter calcoaceticus

text: Acinetobacter calcoaceticus


text: Escherichia coli

text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: DNA

text: Escherichia coli

text: Escherichia coli


text: Klebsiella oxytoca

characteristic: ArrayExpress-Species

text: Klebsiella oxytoca

text: SC

text: public

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: DNA

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: Enterobacter cloacae

text: Enterobacter cloacae

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Enterobacter cloacae

text: Enterobacter cloacae

text: DNA

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: External Id

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: DNA

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Enterobacter asburiae

text: Enterobacter asburiae

text: SC

text: public

text: Enterobacter asburiae

text: Enterobacter asburiae

text: DNA

characteristic: sample description

text: Enterobacter asburiae

text: Enterobacter asburiae


text: Acinetobcater ursingii

text: Acinetobcater ursingii

text: SC

text: public

text: Acinetobcater ursingii

text: Acinetobacter ursingii

text: DNA

text: Acinetobacter ursingii

text: Acinetobcater ursingii

characteristic: strain


text: Pasteurella pneumotropica

text: Pasteurella pneumotropica

text: SC

text: public

text: Pasteurella pneumotropica

text: [Pasteurella] pneumotropica

text: DNA

text: [Pasteurella] pneumotropica

text: Pasteurella pneumotropica

characteristic: title


text: Stenotrophomonas maltophilia

text: Stenotrophomonas maltophilia

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Stenotrophomonas maltophilia

text: Stenotrophomonas maltophilia

text: DNA

text: Stenotrophomonas maltophilia

text: Stenotrophomonas maltophilia


text: Enterobacter aerogenes

text: Enterobacter aerogenes

text: SC

characteristic: INSDC center name

text: public

text: Enterobacter aerogenes

text: [Enterobacter] aerogenes

text: DNA

text: [Enterobacter] aerogenes

text: Enterobacter aerogenes


text: Comamonas testosteroni

text: Comamonas testosteroni

text: SC

characteristic: INSDC first public

text: public

text: Comamonas testosteroni

text: Comamonas testosteroni

text: DNA

text: Comamonas testosteroni

text: Comamonas testosteroni


text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: SC

characteristic: INSDC last update

text: public

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: DNA

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia


text: Proteus mirabilis

text: Proteus mirabilis

text: SC

text: public

characteristic: INSDC status

text: Proteus mirabilis

text: Proteus mirabilis

text: DNA

text: Proteus mirabilis

text: Proteus mirabilis


text: Acinetobacter junii

text: Acinetobacter junii

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Acinetobacter junii

text: Acinetobacter junii

text: DNA

text: Acinetobacter junii

text: Acinetobacter junii


characteristic: ENA-FIRST-PUBLIC

text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


text: Burkholderia gladioli

characteristic: ArrayExpress-Species

text: Burkholderia gladioli

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Burkholderia gladioli

characteristic: common name

text: Burkholderia gladioli

characteristic: organism

text: DNA

text: Burkholderia gladioli

text: Burkholderia gladioli


text: Acinetobacter guillouiae

text: Acinetobacter guillouiae

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Acinetobacter guillouiae

text: Acinetobacter guillouiae

text: DNA

characteristic: sample description

text: Acinetobacter guillouiae

text: Acinetobacter guillouiae

characteristic: strain

characteristic: title


text: Pastuerella pneumotropica

text: Pastuerella pneumotropica

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Pastuerella pneumotropica

text: [Pasteurella] pneumotropica

text: DNA

text: [Pasteurella] pneumotropica

text: Pastuerella pneumotropica


text: Escherichia coli

characteristic: ArrayExpress-Species

text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: DNA

text: Escherichia coli

text: Escherichia coli


text: Burkholderia cepacia

text: Burkholderia cepacia

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Burkholderia cepacia

text: Burkholderia cepacia

text: DNA

text: Burkholderia cepacia

text: Burkholderia cepacia


text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: SC

text: public

characteristic: SRA accession

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: DNA

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Pseudomonas koreensis

text: Pseudomonas koreensis

text: SC

text: public

characteristic: Submitter Id

text: Pseudomonas koreensis

text: Pseudomonas koreensis

text: DNA

text: Pseudomonas koreensis

text: Pseudomonas koreensis


text: Acinetobacter radioresistens

text: Acinetobacter radioresistens

text: SC

text: public

text: Acinetobacter radioresistens

characteristic: common name

text: Acinetobacter radioresistens

text: DNA

text: Acinetobacter radioresistens

text: Acinetobacter radioresistens


text: Acinetobacter schindleri

text: Acinetobacter schindleri

text: SC

text: public

text: Acinetobacter schindleri

text: Acinetobacter schindleri

characteristic: organism

text: DNA

text: Acinetobacter schindleri

text: Acinetobacter schindleri


characteristic: ENA-LAST-UPDATE

text: University of Missouri - Columbia

text: public

tag: Namespace:University of Missouri - Columbia

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: Protocols: V̇O2peak testing To teach the rat how to properly maintain running at the front of the treadmill, all rats began acclimatization to a belt-driven treadmill at 7 wks of age. During acclimatization, rats walked at 15 m/min for five minutes, 3x per week for 2 weeks, until 10 wks of age when the first V̇O2peak test was performed. Importantly, all V̇O2peak testing was performed by a blinded individual using a Metabolic Modular Treadmill (Columbus Instruments, Columbus, OH). At test completion, RER values ranged from 0.90 to greater than 1.00, thus a true V̇O2max was not measured in every test and values are reported as V̇O2peak. No rats reached a plateau in V̇O2, possibly due to our testing procedures which progressively increased speed rather than grade. While we measured V̇O2peak rather than V̇O2max, it is documented that within the same untrained animal, results from maximal oxygen tests whereby a plateau is not observed agree closely with those in which a true max or plateau in oxygen consumption is achieved. At the time of sacrifice, the left ventricle was removed, rapidly frozen in liquid nitrogen, and stored at-80°C until processing. Tissue was homogenized in Trizol using stainless steel beads and Tissuelyser LT. RNA was subsequently extracted using the Trizol method and Qiagen RNeasy kit according to the manufacturer’s instructions, and the resultant concentration was determined using Nanodrop 1000. RNA was eluted in 40 μL of RNase-free water. RNA integrity was confirmed using the BioAnalyzer 2100 automated electrophoresis system prior to cDNA library construction. RNA-seq preparation, including cDNA library construction, was carried out at the University of Missouri DNA Core following manufacturer's protocol using the Illumina TruSeq RNA sample preparation kit v2. Poly-A containing mRNA was isolated from 2 μg of total RNA, RNA fragmentation was carried out, and double-stranded cDNA was produced from fragmented RNA. Lastly, identifier adaptors were ligated to the ends for identification purposes. The final construct of each purified library was evaluated with the BioAnalyzer 2100 automated electrophoresis system, quantified, and diluted in accordance with Illumina's protocol for HiSeq 2000

characteristic: description

text: no exercise wheel access

characteristic: exercise test

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle

characteristic: organism part

text: Rattus norvegicus


characteristic: ENA-CHECKLIST

characteristic: External Id

text: University of Missouri - Columbia

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Norway rat

text: exercise wheel access

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle

text: Rattus norvegicus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: University of Tromso

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Tromso

text: Aliivibrio salmonicida LFI1238

text: Aliivibrio salmonicida LFI1238

text: RNA seq study of fur mutant vs wt of A. salmonicida


text: University of Tromso

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Comparison of transcriptome profiles from Aliivibrio LFI1238 wt and fur knock-out null mutant

text: Aliivibrio salmonicida LFI1238

text: Aliivibrio salmonicida LFI1238


text: public

tag: Namespace:South African Sugarcane Research Institute

text: Assembly of the Miscanthus capensis chloroplast

text: Miscanthus capensis

characteristic: organism

text: Miscanthus capensis

text: Miscanthus capensis chloroplast


name: Tenacibaculum maritimum type strain NCIMB 2154T

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: H. WAKABAYASHI

characteristic: collected by

characteristic: collection date

text: Japan

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Pagrus major

characteristic: host scientific name

text: NCIMB 2154T

characteristic: isolate

text: diseased red sea bream

characteristic: isolation source

text: Tenacibaculum maritimum

text: Tenacibaculum maritimum


text: ZFS:0000033 - ZFS:0000034 - Hatching:Long-Pec - Hatching :Pec-fin

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 50hpf plus ERCC spike mix 1 (Ambion). The sample has been DNAse treated.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: ZFS:0000031 - Pharyngula : Prim -25

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 (Ambion). The sample has been DNAse treated.

text: Danio rerio

text: mixed

characteristic: title


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 50hpf plus ERCC spike mix 1 (Ambion). The sample has been DNAse treated.

text: Danio rerio

text: mixed


text: ZFS:0000031 - Pharyngula : Prim -25

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 (Ambion). The sample has been DNAse treated.

text: Danio rerio

text: mixed


text: URMITE

characteristic: INSDC center name

text: public

text: Olsenella sp. Marseille-P3256

text: Olsenella sp. Marseille-P3256

text: Olsenella mediterranea genome


text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: anonymized name

text: 04/25/2016 12:00

text: Role of Gut Microbiota in Pathophysiology of Parkinson's Disease

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: control blank

characteristic: sample type

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: 04/25/2016 12:00

text: TRUE

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control blank

text: metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: weeks

characteristic: age units

text: Susceptible, Healthy

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: Single

text: FALSE

characteristic: cohoused

text: 09/24/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

text: Early Stage PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: Missing: Not provided

characteristic: anonymized name

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Restricted access

text: After

text: Missing: Not provided

text: PD

text: TRUE

text: PD

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Missing: Not provided

text: Missing: Not provided

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Missing: Not provided

text: Homo sapiens

characteristic: host subject id

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: Missing: Not provided

text: Missing: Not provided

text: UCSDMI

text: TRUE

text: Caucasian

text: stool

characteristic: sample type

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: weeks

text: Nonsusceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 09/24/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

text: Healthy

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age units

text: Susceptible, Healthy

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 09/24/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: Healthy

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Missing: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

characteristic: organism

text: Early Stage PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: weeks

text: Nonsusceptible, PD

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 09/24/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age units

text: Nonsusceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 09/24/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Missing: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

characteristic: organism

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

text: Missing: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Missing: Not provided

characteristic: cage id

text: Missing: Not provided

text: Missing: Not provided

characteristic: cohoused

text: Missing: Restricted access

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Healthy

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Missing: Not provided

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: UCSDMI

text: TRUE

text: Caucasian

characteristic: race

text: stool

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: weeks

characteristic: age units

text: Susceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 09/24/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Missing: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.211.WT.OB1.D1

characteristic: Submitter Id

characteristic: age

text: weeks

text: Nonsusceptible, PD

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 01/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: mouse gut metagenome

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.220.WT.OB1.D7

characteristic: Submitter Id

text: weeks

characteristic: age units

text: Nonsusceptible, Healthy

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 01/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: Healthy

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Healthy

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.226.ASO.OB1.D7

characteristic: Submitter Id

characteristic: age

text: weeks

text: Susceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 01/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: mouse gut metagenome

text: Early Stage PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.279.WT.OB2.D1

characteristic: Submitter Id

text: weeks

characteristic: age units

text: Nonsusceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 01/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.290.ASO.OB2.D1

characteristic: Submitter Id

characteristic: age

text: weeks

text: Susceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 01/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: mouse gut metagenome

text: Early Stage PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.290.ASO.OB2.D49

characteristic: Submitter Id

text: weeks

characteristic: age units

text: Nonsusceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 02/22/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Missing: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.291.WT.OB2.D49

characteristic: Submitter Id

characteristic: age

text: weeks

text: Nonsusceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 02/22/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

text: Healthy

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.292.WT.OB2.D49

characteristic: Submitter Id

text: weeks

characteristic: age units

text: Nonsusceptible, Healthy

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 02/22/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: Healthy

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Missing: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Healthy

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.293.WT.OB2.D49

characteristic: Submitter Id

characteristic: age

text: weeks

text: Susceptible, PD

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 02/22/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

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characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

text: PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.312.WT.HC1.D14

characteristic: Submitter Id

text: weeks

characteristic: age units

text: Nonsusceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Single

text: FALSE

text: 10/01/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Missing: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.312.WT.HC1.D21

characteristic: Submitter Id

characteristic: age

text: weeks

text: Susceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 10/08/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

text: Early Stage PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.312.WT.HC1.D49

characteristic: Submitter Id

text: weeks

characteristic: age units

text: Nonsusceptible, Healthy

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 11/12/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: Healthy

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Healthy

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.312.WT.HC1.D7

characteristic: Submitter Id

characteristic: age

text: weeks

text: Susceptible, PD

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 09/24/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

text: PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.313.ASO.HC1.D14

characteristic: Submitter Id

text: weeks

characteristic: age units

text: Susceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Single

text: FALSE

text: 10/01/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Missing: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.313.ASO.HC1.D21

characteristic: Submitter Id

characteristic: age

text: weeks

text: Nonsusceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 10/08/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

text: Healthy

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.313.ASO.HC1.D49

characteristic: Submitter Id

text: weeks

characteristic: age units

text: Nonsusceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 11/12/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

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text: adult

characteristic: longitude

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

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text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.313.ASO.HC1.D7

characteristic: Submitter Id

characteristic: age

text: weeks

text: Nonsusceptible, PD

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: Single

text: FALSE

characteristic: cohoused

text: 09/24/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Role of Gut Microbiota in Pathophysiology of Parkinson's Disease

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.314.WT.HC1.D14

characteristic: Submitter Id

text: weeks

characteristic: age units

text: Nonsusceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 11/12/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

text: Missing: Not provided

text: Mus musculus

characteristic: host subject id

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.314.WT.HC1.D21

characteristic: Submitter Id

characteristic: age

text: weeks

text: Nonsusceptible, PD

text: Not provided

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 10/08/2015 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: Missing: Not provided

text: adult

characteristic: life stage

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

text: Missing: Not provided