characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGTCGATCTC

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

characteristic: soil environmental package

text: 16S rRNA gene


status: PUBLIC

tag: attribute

text: INRA-CMSE

text: public

text: This study was carried out in the agricultural region of Itasy situated in the Highlands of Madagascar and submitted to a tropical altitude climate with MAT of 18.4�C and MAP of 1319 mm. Hillsides (locally called �tanety�) of Highlands are dominated by ferrallitic soils or Ferralsols according to the FAO classification and are subjected to a hot rainy season from November to April and a cold dry season from May to October. In April 2015, i.e. at the end of the cropping season, soil samples from 49 agricultural parcels managed by smallholder famers and 4 unexploited fields were sampled in the municipality of Imerintsiatosika (18� 59_ 00_ S, 47� 19_ 00_ E). The agricultural plots were submitted to 3 land use types (subsistence crops, agroforestry and forestry) and smallholder farmers conducted different agricultural practices.In each plot, six soil cores, 0-10 cm depth, were sampled using a metallic cylinder. One core was used to measure the soil bulk density and other physicochemical parameters. The remaining 5 soil cores were pooled, sieved (2 mm), and coarse plant debris were removed. Composite samples were maintained at 4�C for one week, prior to further fresh soil incubations and analyses.

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGTAGACTAG

characteristic: multiplex identifiers

text: DNA was extracted using GnS-GII protocol as described in Terrat et al , 2012

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

text: F479 (5-CAGCMGCYGCNGTAANAC-3) R888 (5-CCGYCAATTCMTTTRAGT-3)

characteristic: pcr primers

characteristic: project name

unit: g

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CAGTACTGCG

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

characteristic: soil environmental package

text: 16S rRNA gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGAGCTCATG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

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text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CAGTAGACGT

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 16S rRNA gene

characteristic: title


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CACTGATGTC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

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text: public

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text: terrestrial biome

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text: anthropogenic geographic feature

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text: soil

text: Madagascar

text: metagenome

text: CGCGACATCT

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 16S rRNA gene

characteristic: target gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CATACTCTAC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

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text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CACGTGTCGC

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

characteristic: soil environmental package

text: 16S rRNA gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGATCTGTCG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CACGTAGATC

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 16S rRNA gene

characteristic: title


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGACGTGACT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGATCGTATA

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 16S rRNA gene

characteristic: target gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: TCTCTATGCG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

text: FR1 (5-ANCCATTCAATCGGTANT-3) FF390 (5-CGATAACGAACGAGACCT-3)

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CATACTCTAC

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGTACTCAGA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGAGACGCGC

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: title


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGCGACATCT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGATCACAGT

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: target gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGTGAGCTGA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGCAGTACGA

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CATAGTAGTG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGAGCTCATG

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: title


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGAGCTAGCT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGCGTATACA

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: target gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CATAGTGACA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: TAGCACACTA

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CATCGAGCAG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGCACGCTGT

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: title


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGTGTCTCTA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGCTATCTAT

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: target gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: TGTACTACTC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CACGTGTCGC

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CACGTAGATC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGATCGTATA

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: title


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGACACTATC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGAGACGCGC

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: target gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGATCTGTCG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGACGTGACT

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGTACTCAGA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

text: 18S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGTGAGCTGA

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: title


text: INRA-CMSE

text: public

text: terrestrial biome

text: anthropogenic geographic feature

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CGAGCTCATG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: soil metagenome

text: Illumina-MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 18S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-CMSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: anthropogenic geographic feature

characteristic: environment (feature)

text: soil

text: Madagascar

text: metagenome

text: CGCGTATACA

text: soil metagenome

text: soil metagenome

text: Illumina-MiSeq

text: soil

text: 18S rRNA gene

characteristic: target gene


text: public

tag: Namespace:LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI

text: public

text: metagenome

text: metagenome


CLIG

characteristic: ENA-FIRST-PUBLIC

text: public

text: CLIG

text: CLIG full metagenome

text: metagenome

text: metagenome

text: CLIG


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: gut metagenome

text: gut metagenome

text: MJ

type: has member


characteristic: External Id

text: public

tag: Namespace:INSTITUT NATIONAL DE LA RECHERCHE AGRONOMIQUE

text: tomato

characteristic: common name

text: Fruits overexpressing Sl-AGL11, replicate 1

characteristic: dev stage

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Micro-tom

characteristic: variety


text: INSTITUT NATIONAL DE LA RECHERCHE AGRONOMIQUE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: tomato

text: Fruits overexpressing Sl-AGL11, replicate 2

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Micro-tom


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: tomato

text: Fruits overexpressing Sl-AGL11, replicate 3

characteristic: description

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Micro-tom


text: public

text: tomato

text: Sepals overexpressing Sl-AGL11, replicate 1

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Micro-tom


text: public

text: tomato

text: Sepals overexpressing Sl-AGL11, replicate 2

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Micro-tom


text: public

text: tomato

text: Sepals overexpressing Sl-AGL11, replicate 3

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Micro-tom


text: public

text: tomato

text: Fruits WT, replicate 1

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Fr-WTa

text: Micro-tom


text: public

text: tomato

text: Fruits WT, replicate 2

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Fr-WTb

text: Micro-tom


text: public

text: tomato

text: Fruits WT, replicate 3

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Fr-WTc

text: Micro-tom


text: public

text: tomato

text: Sepals WT, replicate 1

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Sep-WTa

text: Micro-tom


text: public

text: tomato

text: Sepals WT, replicate 2

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Sep-WTb

text: Micro-tom


text: public

text: tomato

text: Sepals WT, replicate 3

text: Solanum lycopersicum

text: Solanum lycopersicum

text: Sep-WTc

text: Micro-tom


text: CRI-FEM

text: public

text: meiotic segregant

characteristic: cell type

text: Duccio Cavalieri, University of Florence

characteristic: collected by

characteristic: collection date

text: baker's yeast

text: Italy

characteristic: geographic location (country and/or sea)

text: Tuscany

characteristic: geographic location (region and locality)

text: duccio Cavalieri, University of Florence

characteristic: identified by

text: damage berries

characteristic: isolation source

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: S. cerevisiae natural strain M28 meiotic segregant 4


BGISEQ-500 ChIP-Seq demo data1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

text: public

text: BGISEQ-500 ChIP-Seq demo data1

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: BGISEQ-500 ChIP-Seq demo data

characteristic: title


BGISEQ-500 ChIP-Seq demo data2

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BGISEQ-500 ChIP-Seq demo data2

text: human

text: Homo sapiens

text: Homo sapiens

text: BGISEQ-500 ChIP-Seq demo data


text: SSI

text: public

text: DEU

characteristic: Submitter Id

characteristic: collection date

text: Salmonella Typhimurium whole genome sequence from Germany. This sample is submitted by RKI to the COMPARE project as part of the source attribution study.

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

characteristic: serovar

text: Salmonella Typhimurium from human, animal or food 2016

type: AMR curated data - CABBAGE

value: meropenem

value: CLSI

value: broth dilution

value: mg/L

value: susceptible

value: Salmonella enterica

value: nalidixic acid

value: amikacin

value: DIN

value: ciprofloxacin

value: mezlocillin

value: ceftazidime

value: oxytetracycline

value: intermediate

value: kanamycin

value: WRG

value: chloramphenicol

value: cefoxitin

value: ampicillin

value: EUCAST

value: cefotaxime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: broth dilution

value: mg/L

value: susceptible

value: resistant

value: gentamicin

value: CLSI

value: meropenem


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: title

value: nalidixic acid

value: Salmonella enterica

value: ceftazidime

value: DIN

value: ciprofloxacin

value: mezlocillin

value: amikacin


text: SSI

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

text: Typhimurium

value: ampicillin

value: oxytetracycline

value: intermediate

value: cefoxitin

value: chloramphenicol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: broth dilution

value: mg/L

value: susceptible

value: cefotaxime

value: streptomycin

value: CA-SFM

value: kanamycin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: EUCAST

value: resistant

value: Salmonella enterica

value: gentamicin

value: ceftazidime

value: WRG

value: nalidixic acid

value: CLSI


text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: other (non-clinical isolate)

text: not provided

text: Bos primigenius taurus

text: Salmonella enterica

text: animal (cow)

characteristic: organism

text: Typhimurium

characteristic: title

value: meropenem

value: DIN

value: oxytetracycline

value: intermediate

value: ciprofloxacin

value: mezlocillin

value: cefoxitin

value: amikacin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

text: Typhimurium

value: broth dilution

value: mg/L

value: susceptible

value: streptomycin

value: CA-SFM

value: ampicillin

value: chloramphenicol


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: resistant

value: Salmonella enterica

value: EUCAST

value: gentamicin

value: kanamycin

value: WRG

value: ceftazidime

value: nalidixic acid


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: ciprofloxacin

value: DIN

value: cefoxitin

value: CLSI

value: meropenem

value: mezlocillin

value: cefotaxime

value: oxytetracycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: title

value: amikacin

value: broth dilution

value: mg/L

value: susceptible

value: intermediate

value: ampicillin

value: chloramphenicol

value: streptomycin

value: CA-SFM


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

text: Typhimurium

value: ciprofloxacin

value: Salmonella enterica

value: resistant

value: EUCAST

value: ceftazidime

value: nalidixic acid


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human urine

text: urinary tract

text: Typhimurium

characteristic: serovar

value: DIN

value: meropenem

value: CLSI

value: kanamycin

value: WRG

value: mezlocillin

value: cefotaxime

value: cefoxitin

value: gentamicin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: other (non-clinical isolate)

text: not provided

text: Bos primigenius taurus

text: Salmonella enterica

text: animal (cow)

characteristic: isolation source

text: Typhimurium

value: broth dilution

value: mg/L

value: susceptible

value: oxytetracycline

value: intermediate

value: streptomycin

value: ampicillin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: title

value: EUCAST

value: resistant

value: Salmonella enterica

value: ciprofloxacin

value: amikacin

value: ceftazidime


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

text: Typhimurium

value: nalidixic acid

value: CLSI

value: mezlocillin

value: DIN

value: CA-SFM

value: meropenem

value: kanamycin

value: WRG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: broth dilution

value: mg/L

value: susceptible

value: cefoxitin

value: intermediate

value: oxytetracycline

value: chloramphenicol


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human blood

characteristic: isolation source

text: blood

text: Typhimurium

value: resistant

value: Salmonella enterica

value: amikacin

value: streptomycin

value: gentamicin

value: ciprofloxacin

value: cefotaxime


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human blood

text: blood

characteristic: organism

text: Typhimurium

characteristic: title

value: ceftazidime

value: DIN

value: CLSI

value: CA-SFM

value: meropenem

value: nalidixic acid

value: mezlocillin

value: ampicillin

value: EUCAST


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: other (non-clinical isolate)

characteristic: host

text: not provided

text: Bos primigenius taurus

text: Salmonella enterica

text: animal (cow)

text: Typhimurium

value: kanamycin

value: WRG

value: broth dilution

value: mg/L

value: susceptible

value: cefoxitin

value: chloramphenicol

value: oxytetracycline

value: intermediate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

text: other (non-clinical isolate)

text: not provided

characteristic: host health state

text: Bos primigenius taurus

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: animal (cow)

text: Typhimurium

characteristic: serovar

value: ciprofloxacin

value: DIN

value: Salmonella enterica

value: resistant

value: amikacin

value: cefotaxime

value: gentamicin

value: streptomycin


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: other (non-clinical isolate)

text: not provided

text: Bos primigenius taurus

text: Salmonella enterica

text: animal (cow)

characteristic: isolation source

text: Typhimurium

value: kanamycin

value: ampicillin

value: EUCAST

value: mezlocillin

value: ceftazidime

value: CA-SFM

value: meropenem

value: CLSI


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: other (non-clinical isolate)

text: not provided

text: Avialae

text: Salmonella enterica

text: animal (bird) stool

characteristic: organism

text: Typhimurium

characteristic: title

value: broth dilution

value: mg/L

value: susceptible

value: WRG

value: chloramphenicol

value: intermediate

value: oxytetracycline


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: other (non-clinical isolate)

characteristic: host

text: not provided

text: not provided

text: Salmonella enterica

text: food (ground meat)

text: Typhimurium

value: DIN

value: Salmonella enterica

value: amikacin

value: nalidixic acid

value: resistant

value: ciprofloxacin

value: gentamicin


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: cefoxitin

value: streptomycin

value: CA-SFM

value: kanamycin

value: ampicillin

value: EUCAST

value: ceftazidime

value: cefotaxime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: broth dilution

value: mg/L

value: intermediate

value: susceptible

value: CLSI

value: WRG

value: meropenem

value: mezlocillin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: title

value: amikacin

value: DIN

value: Salmonella enterica

value: gentamicin

value: chloramphenicol

value: nalidixic acid

value: oxytetracycline

value: ciprofloxacin

value: resistant


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

text: Typhimurium

value: broth dilution

value: ceftazidime

value: cefotaxime

value: streptomycin

value: CA-SFM

value: cefoxitin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: ampicillin

value: EUCAST

value: mg/L

value: susceptible

value: meropenem

value: CLSI

value: kanamycin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: Salmonella enterica

value: mezlocillin

value: DIN

value: WRG

value: intermediate

value: nalidixic acid

value: amikacin

value: gentamicin


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: title

value: ciprofloxacin

value: broth dilution

value: chloramphenicol

value: resistant

value: streptomycin

value: CA-SFM

value: oxytetracycline

value: cefotaxime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

text: Typhimurium

value: ceftazidime

value: mg/L

value: susceptible

value: ampicillin

value: EUCAST

value: meropenem

value: CLSI

value: kanamycin

value: cefoxitin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: DIN

value: Salmonella enterica

value: WRG

value: ciprofloxacin

value: mezlocillin

value: nalidixic acid

value: gentamicin


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: streptomycin

value: CA-SFM

value: broth dilution

value: resistant

value: chloramphenicol

value: amikacin

value: oxytetracycline

value: cefotaxime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: title

value: mg/L

value: susceptible

value: CLSI

value: ceftazidime

value: meropenem


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human

text: Typhimurium

value: Salmonella enterica

value: DIN

value: kanamycin

value: WRG

value: ampicillin

value: EUCAST


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: gentamicin

value: broth dilution

value: ciprofloxacin

value: streptomycin

value: CA-SFM

value: cefoxitin

value: nalidixic acid

value: mezlocillin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: other (non-clinical isolate)

text: not provided

text: Sus scrofa domesticus

text: Salmonella enterica

text: animal (pig)

characteristic: isolation source

text: Typhimurium

value: CLSI

value: mg/L

value: susceptible

value: chloramphenicol

value: resistant

value: intermediate

value: oxytetracycline

value: amikacin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human

characteristic: organism

text: Typhimurium

characteristic: title

value: DIN

value: Salmonella enterica

value: ceftazidime

value: ampicillin

value: EUCAST

value: cefotaxime

value: kanamycin

value: WRG

value: meropenem


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

text: Typhimurium

value: streptomycin

value: CA-SFM

value: broth dilution

value: cefoxitin

value: CLSI

value: ciprofloxacin

value: gentamicin

value: mezlocillin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: nalidixic acid

value: mg/L

value: susceptible

value: resistant

value: amikacin

value: DIN

value: chloramphenicol

value: oxytetracycline


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: Salmonella enterica

value: ceftazidime

value: cefotaxime

value: kanamycin

value: WRG

value: meropenem

value: ampicillin

value: EUCAST


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: title

value: CLSI

value: broth dilution

value: streptomycin

value: CA-SFM

value: gentamicin

value: ciprofloxacin

value: cefoxitin

value: intermediate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: other (non-clinical isolate)

characteristic: host

text: not provided

text: Bos primigenius taurus

text: Salmonella enterica

text: animal (cow)

text: Typhimurium

value: DIN

value: mg/L

value: susceptible

value: chloramphenicol

value: resistant

value: mezlocillin

value: amikacin

value: nalidixic acid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: Salmonella enterica

value: meropenem

value: ceftazidime

value: oxytetracycline

value: cefotaxime

value: ampicillin

value: EUCAST


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: ciprofloxacin

value: broth dilution

value: kanamycin

value: WRG

value: streptomycin

value: CA-SFM

value: CLSI

value: gentamicin

value: cefoxitin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: title

value: nalidixic acid

value: mg/L

value: susceptible

value: DIN

value: chloramphenicol

value: mezlocillin

value: resistant

value: amikacin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

text: Typhimurium

value: Salmonella enterica

value: ceftazidime

value: oxytetracycline

value: meropenem

value: ampicillin

value: EUCAST

value: ciprofloxacin

value: cefotaxime


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: streptomycin

value: CA-SFM

value: broth dilution

value: CLSI

value: cefoxitin

value: gentamicin

value: kanamycin

value: WRG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: amikacin

value: DIN

value: mg/L

value: susceptible

value: nalidixic acid

value: resistant

value: chloramphenicol

value: mezlocillin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: other (non-clinical isolate)

text: not provided

text: not provided

text: Salmonella enterica

text: food (meat)

characteristic: organism

text: Typhimurium

characteristic: title

value: oxytetracycline

value: Salmonella enterica

value: ceftazidime

value: ciprofloxacin

value: cefotaxime

value: ampicillin

value: EUCAST


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

characteristic: collection date

characteristic: description

text: Salmonella

characteristic: genus

text: Germany

text: other (non-clinical isolate)

characteristic: host

text: not provided

text: not provided

text: Salmonella enterica

text: food (ground meat9

text: Typhimurium

value: CLSI

value: broth dilution

value: streptomycin

value: CA-SFM

value: kanamycin

value: gentamicin

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: DEU

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Salmonella enterica

characteristic: isolate

text: Human stool

text: gastrointestinal system

text: Typhimurium

characteristic: serovar

value: mg/L

value: resistant

value: amikacin

value: susceptible

value: DIN

value: WRG


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DEU

text: Salmonella

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

characteristic: isolation source

text: gastrointestinal system

text: Typhimurium

value: ciprofloxacin

value: Salmonella enterica

value: cefoxitin

value: oxytetracycline

value: intermediate

value: ceftazidime

value: chloramphenicol


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: homo sapiens

text: Salmonella enterica

text: Human stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: title

value: mezlocillin

value: broth dilution

value: CLSI

value: cefotaxime

value: nalidixic acid

value: ampicillin

value: EUCAST


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Roche Innovation Center Copenhagen A/S

text: public

tag: Namespace:Roche Innovation Center Copenhagen A/S

text: R4a - input

characteristic: description

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R7 - input

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R4b-universal-control (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R7-universal-control (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R4b-HIV1-treated (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R7-HIV1-treated (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R4b-human-treated (5 min) (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R7-human-treated (5 min) (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R4b-human-treated (10 min) (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R7-human-treated (10 min) (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R4b-human-treated (60 min) (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: Roche Innovation Center Copenhagen A/S

text: public

text: R7-human-treated (60 min) (samples of this index pooled before probing)

text: synthetic construct

text: synthetic construct


text: UNIVERSITY OF VIENNA

text: public

tag: Namespace:UNIVERSITY OF VIENNA

text: polyA fraction of SmAP protein overexpression

text: Sulfolobus solfataricus P2

text: Sulfolobus solfataricus P2

text: SmAP1 overexpression


text: University of Jyvaskyla

text: public

tag: Namespace:University of Jyvaskyla

characteristic: collection date

text: soil

text: arcto-alpine tundra biome

characteristic: environment (biome)

text: alpine tundra

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: plant-associated

characteristic: plant-associated environmental package

text: Fungal communities associated with arcto-alpine plants are strongly shaped by regional effects

characteristic: project name

text: metagenome

text: Ion-Torrent

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Jyvaskyla

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: rhizosphere soil

text: arcto-alpine tundra biome

text: alpine tundra

text: soil

text: Austria

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Ion-Torrent


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Jyvaskyla

text: public

characteristic: collection date

text: endophyte

characteristic: description

text: arcto-alpine tundra biome

characteristic: environment (biome)

text: alpine tundra

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Austria

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: plant-associated

text: metagenome

text: Ion-Torrent

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Jyvaskyla

text: public

text: soil

text: arcto-alpine tundra biome

text: arctic tundra

text: soil

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Ion-Torrent

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Jyvaskyla

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: rhizosphere soil

text: arcto-alpine tundra biome

text: arctic tundra

text: soil

text: Finland

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Ion-Torrent


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Jyvaskyla

text: public

characteristic: collection date

text: endophyte

characteristic: description

text: arcto-alpine tundra biome

characteristic: environment (biome)

text: arctic tundra

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Finland

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: plant-associated

text: metagenome

text: Ion-Torrent

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Jyvaskyla

text: public

text: soil

text: arcto-alpine tundra biome

text: arctic tundra

text: soil

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Ion-Torrent

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Jyvaskyla

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: rhizosphere soil

text: arcto-alpine tundra biome

text: arctic tundra

text: soil

text: Norway

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Ion-Torrent


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Jyvaskyla

text: public

characteristic: collection date

text: endophyte

characteristic: description

text: arcto-alpine tundra biome

characteristic: environment (biome)

text: arctic tundra

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Norway

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: plant-associated

text: metagenome

text: Ion-Torrent

characteristic: title


E-MTAB-5629:BME EXPOSURE1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-5629:BME EXPOSURE1

tag: Namespace:National Research Laboratory of Molecular Microbiology and Toxicology, Department of Agricultural Biotechnology, Center for Food Safety and Toxicology, Seoul National University

text: ArrayExpress

characteristic: broker name

text: Protocols: V. vulnificus MO6-24/O cells (approximately 2 X 10^8 colony forming unit) grown in basal medium eagle for 2 h were fixed with 2:1 volumes of RNAprotect Bacteria Reagent (Qiagen) and harvested. Total RNAs were isolated from the V. vulnificus cells using miRNeasy Mini Kit (Qiagen). Genomic DNA in the purified RNA was removed with digestion using TURBO^TM DNase (Ambion) to below PCR-detectable levels. RNA quality was determined using Bioanalyser (Agilent) 23S and 16S rRNA of total RNAs were depleted using MICROBExpress kit (Ambion). The enriched mRNAs were fragmented using Fragment, Prime, Finish Mix (Illumina). The mixtures were reacted at 94°C for 8 min and then incubated at 4°C. Synthesis of first strand cDNA was prepared by mixing 0.5 μg of the enriched mRNA, First Strand Synthesis Act D Mix (Illumina), and Superscript® II polymerase (Invitrogen). The mixture was incubated at 25°C for 10 min and at 42°C for 45 min and the polymerase was finally inactivated at 75°C for 15 min. Remaining dNTPs were removed AMPure XP beads. Then, the second strand of cDNA was further synthesized using Second Strand Marking Master (Illumina). The mixture was incubated at 16°C for 60 min. Remaining dUNTPs were removed AMPure XP beads. A single 3’ adenosine moiety was added to the cDNA fragments using A-Tailing mix (Illumina) The Illumina adapters (containing primer sites for sequencing and flowcell surface annealing) were ligated onto the repaired ends on the cDNA fragments using Ligation Mix (Illumina). The mixtures were incubated at °C for 10 min and then add the Stop Ligation Buffer (Illumina) for inactivation of ligation. Final mixtures were purified using AMPure XP beads.

text: basal medium eagle for 2 h (as negative control)

characteristic: growth condition

text: Vibrio vulnificus

text: Vibrio vulnificus

text: Vibrio vulnificus

characteristic: strain

text: BME EXPOSURE1


E-MTAB-5629:BME EXPOSURE2

text: National Research Laboratory of Molecular Microbiology and Toxicology, Department of Agricultural Biotechnology, Center for Food Safety and Toxicology, Seoul National University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5629:BME EXPOSURE2

text: ArrayExpress

text: Vibrio vulnificus

text: Vibrio vulnificus

text: Vibrio vulnificus

text: BME EXPOSURE2


E-MTAB-5629:HT29-MTX EXPOSURE1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5629:HT29-MTX EXPOSURE1

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: V. vulnificus MO6-24/O cells (approximately 2 X 10^8 colony forming unit) exposed to HT29-methotrexate cells (2 X 10^7 cells in the cell culture dish (Nunc)) for 2 h were fixed with 2:1 volumes of RNAprotect Bacteria Reagent (Qiagen) and harvested. Total RNAs were isolated from the V. vulnificus cells using miRNeasy Mini Kit (Qiagen). Genomic DNA in the purified RNA was removed with digestion using TURBO^TM DNase (Ambion) to below PCR-detectable levels. RNA quality was determined using Bioanalyser (Agilent) 23S and 16S rRNA of total RNAs were depleted using MICROBExpress kit (Ambion). The enriched mRNAs were fragmented using Fragment, Prime, Finish Mix (Illumina). The mixtures were reacted at 94°C for 8 min and then incubated at 4°C. Synthesis of first strand cDNA was prepared by mixing 0.5 μg of the enriched mRNA, First Strand Synthesis Act D Mix (Illumina), and Superscript® II polymerase (Invitrogen). The mixture was incubated at 25°C for 10 min and at 42°C for 45 min and the polymerase was finally inactivated at 75°C for 15 min. Remaining dNTPs were removed AMPure XP beads. Then, the second strand of cDNA was further synthesized using Second Strand Marking Master (Illumina). The mixture was incubated at 16°C for 60 min. Remaining dUNTPs were removed AMPure XP beads. A single 3’ adenosine moiety was added to the cDNA fragments using A-Tailing mix (Illumina) The Illumina adapters (containing primer sites for sequencing and flowcell surface annealing) were ligated onto the repaired ends on the cDNA fragments using Ligation Mix (Illumina). The mixtures were incubated at °C for 10 min and then add the Stop Ligation Buffer (Illumina) for inactivation of ligation. Final mixtures were purified using AMPure XP beads.

text: exposed to HT29-methotrexate cells for 2 h

text: Vibrio vulnificus

text: Vibrio vulnificus

text: Vibrio vulnificus

text: HT29-MTX EXPOSURE1


E-MTAB-5629:HT29-MTX EXPOSURE2

text: public

text: E-MTAB-5629:HT29-MTX EXPOSURE2

text: ArrayExpress

characteristic: description

text: Vibrio vulnificus

text: Vibrio vulnificus

text: Vibrio vulnificus

text: HT29-MTX EXPOSURE2


text: CBMSO

text: public

text: In this study, NGS sequencing of both whole DNA and mRNA was performed in Leishmania donovani lines selected by their resistance against either antimony, anphotericin B, miltefosine or paromomycin. Chromosomal reorganizations and substantial changes in gene expression have been found to be associated with the different drug resistances.

text: Leishmania donovani

text: Leishmania donovani

text: DNA and mRNA sequencing in L.donovani lines selected by drug resistance


text: CRI-FEM

text: public

text: meiotic segregant

characteristic: cell type

text: Duccio Cavalieri, University of Florence

characteristic: collected by

characteristic: collection date

text: baker's yeast

characteristic: common name

text: Italy

characteristic: geographic location (country and/or sea)

text: Tuscany

characteristic: geographic location (region and locality)

characteristic: identified by

text: damage berries

characteristic: isolation source

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: S. cerevisiae natural strain M28 meiotic segregant 4


E-MTAB-5630:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Research Institute of Horticulture

characteristic: INSDC center name

text: public

text: E-MTAB-5630:Sample 1

tag: Namespace:Research Institute of Horticulture

text: ArrayExpress

characteristic: broker name

text: Protocols: One-year-old, potted apple trees cultivars Idared and Free Redstar grafted on M.26 were inoculated with E. amylovora strain 650 in greenhouse conditions. Inoculation was made on actively growing shoots, punctured with a sterile needle on approximately 7 cm of their length and covered by droplets of bacterial suspension grown overnight in TY (Bacto Tryptone 0.5%, Yeast Extract 0.3%, CaCl2 0.065%) medium. After 24 h and 6 days from the inoculation time, samples were processed, and total RNA was isolated with a Total RNA Purification Kit (Norgen Biotek), as described by Kałużna et al. (2016). RNA was isolated with a Total RNA Purification Kit (Norgen Biotek), as described by Kałużna et al. (2016). mRNA was used for the library construction using NEBNext Ultra Directional RNA Library Preparation Kit for Illumina (New England Biolabs, E7420S).

text: in vitro culture

characteristic: growth condition

text: Erwinia amylovora

characteristic: organism

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 1

characteristic: title


E-MTAB-5630:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Research Institute of Horticulture

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5630:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: Bacteria were grown overnight in TY (Bacto Tryptone 0.5%, Yeast Extract 0.3%, CaCl2 0.065%) RNA was isolated with a Total RNA Purification Kit (Norgen Biotek), as described by Kałużna et al. (2016). mRNA was used for the library construction using NEBNext Ultra Directional RNA Library Preparation Kit for Illumina (New England Biolabs, E7420S).

text: Idared apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 10


E-MTAB-5630:Sample 11

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 11

text: ArrayExpress

characteristic: description

text: Idared apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 11


E-MTAB-5630:Sample 12

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 12

text: ArrayExpress

text: Idared apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 12


E-MTAB-5630:Sample 13

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 13

text: ArrayExpress

text: Idared apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 13


E-MTAB-5630:Sample 2

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 2

text: ArrayExpress

text: in vitro culture

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 2


E-MTAB-5630:Sample 3

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 3

text: ArrayExpress

text: Free Redstar apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 3


E-MTAB-5630:Sample 4

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 4

text: ArrayExpress

text: Free Redstar apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 4


E-MTAB-5630:Sample 5

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 5

text: ArrayExpress

text: Free Redstar apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 5


E-MTAB-5630:Sample 6

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 6

text: ArrayExpress

text: Free Redstar apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 6


E-MTAB-5630:Sample 7

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 7

text: ArrayExpress

text: Free Redstar apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 7


E-MTAB-5630:Sample 8

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 8

text: ArrayExpress

text: Idared apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 8


E-MTAB-5630:Sample 9

text: Research Institute of Horticulture

text: public

text: E-MTAB-5630:Sample 9

text: ArrayExpress

text: Idared apple tree

text: Erwinia amylovora

text: Erwinia amylovora

text: Erwinia amylovora

text: Sample 9


text: public

text: E-MTAB-5623:S_lividans_TK24_Syscomp_light_Dark_strRNA-S2-DARK

tag: Namespace:Bielefeld  University, Center for Biotechnology (CeBiTec), Microbial Genomics and Biotechnology, Bielefeld, Germany

text: ArrayExpress

text: Protocols: Main cultures were performed in 48 well MTP 48 B “FlowerPlates®” covered by a F GP 10 gas-permeable sealing foil (m2p labs GmbH, Baesweiler, Germany). Per well, 1000 µL medium was inoculated to an initial OD600 of 0.2. Cultivation conditions were 30 °C, ≥ 85 % relative humidi-ty, 900 rpm shaking frequency and 200 µmol/ (m^-2 x s^-1) illumination intensity. The light spectrum was approximated to typical Mid-European daylight (Morschett et al., 2017). Illuminated cultures were run in a Photo BioLector® prototype (Morschett et al., 2017). In both setups, biomass was monitored online by scattered light. Samples for transcriptomic analysis were taken during the late growth phase . Main cultures were performed in 48 well MTP 48 B “FlowerPlates®” covered by a F GP 10 gas-permeable sealing foil (m2p labs GmbH, Baesweiler, Germany). Per well, 1000 µL medium was inoculated to an initial OD600 of 0.2. Cultivation conditions were 30 °C, ≥ 85 % relative humidi-ty, 900 rpm shaking frequency and 0 µmol/ (m^-2 x s^-1) illumination intensity. Experiment without illumination were carried out in a commercial BioLector® (m2p labs GmbH, Bae-sweiler, Germany). In both setups, biomass was monitored online by scattered light. Samples for transcriptomic analysis were taken during the late growth phase . Briefly, S. lividans TK24 cells were harvested at late growth phase. Total RNA was isolated from two biological replicates using RNeasy Mini Kit along with a DNase Kit (both from Qiagen). Initially RNA quality was checked by Trinean Xpose (Gentbrugge,Belgium) and Agilent RNA Nano 6000 kit on Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). Samples contaminated with DNA were treated with DNase (Qiagen), cleaned as described above and rechecked by Xpose and Agilent Bioanalyzer. Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the ribosomal RNA molecules from the isolated total RNA. Removal of rRNA was checked by Agilent RNA Pico 6000 kit on Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany).

text: MTP BioLector (BL) cultivation standard (dark)

text: Streptomyces lividans

text: Streptomyces lividans

text: Streptomyces lividans

text: none (dark)

characteristic: stimulus


text: Bielefeld University, Center for Biotechnology (CeBiTec), Microbial Genomics and Biotechnology, Bielefeld, Germany

text: public

text: E-MTAB-5623:S_lividans_TK24_Syscomp_light_Dark_strRNA-S2-LIGHT

text: ArrayExpress

text: Photo BioLector (BL) prototype (Morschett et al., 2017) (light)

text: Streptomyces lividans

text: Streptomyces lividans

text: Streptomyces lividans

text: Light


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: subject id


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CRI-FEM

characteristic: INSDC center name

text: public

text: meiotic segregant

characteristic: cell type

characteristic: collected by

characteristic: collection date

text: baker's yeast

text: Italy

characteristic: geographic location (country and/or sea)

text: Tuscany

characteristic: geographic location (region and locality)

characteristic: identified by

text: damage berries

characteristic: isolation source

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KI-BN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: mouse embryonic cell deficient in Dnmt1, Dnmt3a and Dnmt3b

characteristic: cell line

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Goat IgG ChIP-seq sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KI-BN

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: mouse embryonic cell deficient in Tet1, Tet2 and Tet3

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Goat IgG ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3158_Dnmt-TKO-mES_Replicate-1_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3158_Dnmt-TKO-mES_Replicate-2_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3158_Tet-TKO-mES_Replicate-1_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3158_Tet-TKO-mES_Replicate-2_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3640_Dnmt-TKO-mES_Replicate-1_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3640_Dnmt-TKO-mES_Replicate-2_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3640_Tet-TKO-mES_Replicate-1_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3640_Tet-TKO-mES_Replicate-2_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Oct4_AF1759_Dnmt-TKO-mES_Replicate-1_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: Oct4_AF1759_Dnmt-TKO-mES_Replicate-2_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: Oct4_AF1759_Tet-TKO-mES_Replicate-1_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: Oct4_AF1759_Tet-TKO-mES_Replicate-2_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: Oct4_ab19857_Dnmt-TKO-mES_Replicate-1_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: Oct4_ab19857_Dnmt-TKO-mES_Replicate-2_Batch-1

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Rabbit IgG ChIP-seq sample


text: KI-BN

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Rabbit IgG ChIP-seq sample


text: KI-BN

text: public

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Goat IgG ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3158_wild-type-mES_Replicate-1_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3158_wild-type-mES_Replicate-2_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3640_wild-type-mES_Replicate-1_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: Klf4_AF3640_wild-type-mES_Replicate-2_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Klf4 ChIP-seq sample


text: KI-BN

text: public

text: mouse embryonic cell deficient in Dnmt1, Dnmt3a and Dnmt3b

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mouse IgG ChIP-seq sample