text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.768


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY COLLEGE LONDON

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Arabidopsis thaliana Recombinant Inbred Line, part of the MAGIC genetic reference panel, pubmed 19593375, 28179367

characteristic: description

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.769

characteristic: title


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.771


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.772


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.773


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.774


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.776


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.778


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.780


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.781


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.782


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.783


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.784


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.785


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.786


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.787


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.788


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana Recombinant Inbred Line, part of the MAGIC genetic reference panel, pubmed 19593375, 28179367

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.79


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.790


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.791


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.792


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.794


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.795


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.796


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.797


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.798


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.8


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.80


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.800


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.801


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.802


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.803


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.805


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana Recombinant Inbred Line, part of the MAGIC genetic reference panel, pubmed 19593375, 28179367

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.806


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.807


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.809


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.81


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.811


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.812


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.813


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.814


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.816


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.818


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.819


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.83


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.85


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.86


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.88


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.89


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana Recombinant Inbred Line, part of the MAGIC genetic reference panel, pubmed 19593375, 28179367

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.9


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.90


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.91


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.92


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.94


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.95


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.96


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.97


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.98


text: UNIVERSITY COLLEGE LONDON

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Low-coverage WGS of MAGIC recombinant inbred line MAGIC.99


text: URMITE

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text: Marinilactibacillus piezotolerans

text: Marinilactibacillus piezotolerans

characteristic: strain

text: Marinilactibacillus piezotolerans genome


text: KULEUVEN

text: public

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text: lake water metagenome


text: Garvan Institute of Medical Research

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tag: Namespace:Garvan Institute of Medical Research

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text: Protocols: Mice were sacrificed by CO2 asphyxiation and cervical dislocation. Both humeri were isolated by disarticulation from 6 mice. Soft tissue including muscle, ligaments and tendons were removed, before the surface was gently scraped with a scalpel to remove the periosteum. Diaphysial bone from the humeri was isolated by cutting immediately proximal to the deltoid tuberosity and then 1mm proximal to the epicondyles before completely removing the deltoid tuberosity along the bone shaft. Bone marrow was removed from the humeri by first flushing with PBS (fraction taken for sequencing) until visibly clean and then centrifuging at 14,000rcf for 15 seconds. Bilateral samples from each mouse were processed and snap frozen together in liquid N2 within ~16 minutes of sacrifice. Bone marrow flushed from each bone (before centrifugation) was resuspended in 1 ml PBS before centrifugation at 800rcf for 5 mins. The PBS supernatant was removed and the pellet resuspended in 1ml of TRIreagent (Sigma T9424) and stored at -20 degrees celsius. All animal experiments were performed in accordance with an approved protocol of the St Vincents Hospital Animal Ethics committee (ARA 14/43). 6-8 week old C57BL/KaLwRijHsd (BKAL) male mice (Harlan, Netherlands) were injected intravenously with 0.5 x 106 syngeneic 5TGM1-eGFP murine myeloma cells in 200 μl PBS49,65. Mice were with calcein (s.c. 20mg/kg) 6 and 2 days prior to harvest. Mice were sacrificed at 21 days (5TGM1) and the bilateral humeri collected for RNAseq analysis. Bone samples: 800 ml TRIreagent (Sigma T9424) was added directly to the frozen bone samples and homogenised using a Polytron hand held homogeniser (Kinematica PT 1200 E 11010026). RNA was isolated according to the manufacturers protocol and cleaned with an additional ethanol-precipitation step. Bone marrow samples: RNA was isolated according to the manufacturers protocol. All samples: RNA yield was determined using a Nanodrop (Thermo) and RNA integrity determined using the Bioanalyser RNA 6000 Nano Kit (Agilent Technologies 5067-1511). Total-RNA (200ng) was depleted of ribosomal RNA using RNaseH (Epicentre H39500) and ribosomal RNA targeting oligonucleotides based on a protocol by Adiconis et al., 2013 (Adiconis et al., 2013). Briefly, total RNA, spiked with ERCC internal controls (Life Technologies 4456739), was incubated with ribosomal-RNA targeting oligos and RNaseH to degrade the rRNAs before the oligos were removed with a DNase treatment (Life Technologies AM2238). RNA was repurified using magnetic beads according to the manufacturers protocol (Beckman Coulter Genomics A63987). Total-RNA, 125bp paired-end, stranded transcriptome libraries were prepared using the TruSeq Stranded Total RNA LT Sample Prep Kit starting from the fragmentation step in the manufacturers protocol (Illumina RS-122-2201).

text: multiple myeloma

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text: Mus musculus

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characteristic: geographic location (depth)

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characteristic: geographic location (latitude)

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text: metagenome

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text: metagenome

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text: EMBL

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text: EMBL

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characteristic: ENA-CHECKLIST

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text: soil metagenome

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text: EMBL

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text: public

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text: soil

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characteristic: ENA-CHECKLIST

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text: metagenome

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text: soil

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: soil

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

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text: metagenome

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text: soil metagenome

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text: EMBL

characteristic: INSDC first public

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text: public

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characteristic: Submitter Id

text: soil

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text: soil metagenome

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characteristic: ENA-LAST-UPDATE

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text: EMBL

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text: public

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text: soil

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text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: Savannas

text: soil

text: Madagascar

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

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text: soil metagenome

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characteristic: ENA-LAST-UPDATE

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text: EMBL

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text: public

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characteristic: ENA-CHECKLIST

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text: EMBL

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text: public

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text: soil

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text: Czech Republic

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text: metagenome

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text: soil

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: soil

text: Germany

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

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text: soil metagenome

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text: soil

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text: soil sample


characteristic: ENA-CHECKLIST

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text: EMBL

characteristic: INSDC first public

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text: public

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text: soil

text: Russia

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text: soil metagenome

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text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

text: Mediterrean

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: soil

text: Iran

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: Panama

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: soil

text: Mexico

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: New Zealand

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: Savannas

text: soil

text: Benin

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Savannas

text: soil

text: Democratic Republic of the Congo

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

text: Savannas

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Zimbabwe

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: soil

text: Thailand

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

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characteristic: soil environmental package

text: soil sample


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characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: Malaysia

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text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: soil

text: India

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

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characteristic: soil environmental package

text: soil sample


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characteristic: External Id

text: EMBL

characteristic: INSDC first public

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

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text: soil

text: Botswana

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

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text: soil

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text: Indonesia

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text: soil metagenome

text: soil metagenome

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text: soil

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: soil

text: Finland

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

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characteristic: sequencing method

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characteristic: soil environmental package

text: soil sample


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characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: Russia

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text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

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characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: soil

text: France

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


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characteristic: External Id

text: EMBL

characteristic: INSDC first public

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text: public

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text: Argentina

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text: soil sample

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text: Morocco

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text: soil sample


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text: EMBL

text: public

text: soil

text: Mexico

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text: soil metagenome

characteristic: project name

text: soil metagenome

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text: soil sample


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text: EMBL

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text: public

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text: Japan

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text: soil metagenome

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text: soil metagenome

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text: soil

text: soil sample

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text: EMBL

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text: public

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text: soil

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text: Taiwan

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text: metagenome

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text: soil metagenome

text: Illumina

text: soil

text: soil sample


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text: EMBL

text: public

text: Mediterrean

text: soil

text: Iran

characteristic: geographic location (elevation)

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characteristic: geographic location (longitude)

text: metagenome

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text: soil metagenome

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text: EMBL

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: Iran

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text: soil metagenome

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text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

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text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: soil

text: Brazil

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Savannas

text: soil

text: Australia

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: Savannas

text: soil

text: Zimbabwe

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: Cameroon

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text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: soil

text: Malaysia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: Sri Lanka

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: soil

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: Switzerland

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Thailand

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: soil

text: Morocco

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: Madagascar

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: New Zealand

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: soil

text: Iran

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: France

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


C. d. terrificus venom gland

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: C. d. terrificus venom gland

tag: Namespace:School of Pharmaceutical Sciences of Ribeirao Pret

text: adult

characteristic: age

text: tropical rattlesnake

characteristic: common name

text: Brazil

text: Crotalus durissus terrificus

text: Crotalus durissus terrificus

text: male

characteristic: sex

text: venom gland

characteristic: tissue type

text: C. d. terrificus venom gland


text: Bielefeld University CeBiTec

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Bielefeld University CeBiTec

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: B. amyloliquefaciens FZB42 was grown in three test tubes for each of the two replicates containing 10 ml biofilm inducing MgSS medium (5 mM K2HPO4 (pH 7), 100 mM MOPS (pH 7), 2 mM MgCl2, 700 µM MnCl2, 50 µM FeCl2, 1 µM ZnCl2, 2 µM thiamine, 0.5 % glycerol, 50 µg/ml tryptophan, 50 µg/ml phenylalanine) with an inoculation density of 0.01 OD600. After 22.5 h, cell growth reached the early stationary phase and six of the test tubes were transferred from the shaker to a test tube rack to induce biofilm formation on the surface of the medium. Remaining test tubes were kept rotating to sustain the planktonic growth state. Cultivations were stopped 24 h after induction of biofilm formation. For the isolation of RNA from cells in biofilm formation the biofilm of three test tubes was combined in 1.5 ml RLT buffer (provided in RNeasy Mini Kit; Qiagen) per replicate. Biofilm was harvested by holding a pipette tip on the biofilm on the surface and fishing the whole biofilm out before resuspending it in RLT buffer. For the isolation of RNA from planktonic cells, 1.5 ml cell culture of three test tubes per replicate were centrifuged and the resulting pellet was resuspended in 1.5 ml RLT buffer. Resuspended cells were disrupted by ribolysation (30s; speed 6.5, repeated after 1 min on ice) in 2 ml tubes with Lysing Matrix B (MPbiomedical). Subsequently, the RNA was isolated according to the published protocol by Rüberg et al. (2003) using the RNeasy Mini Kit (Qiagen, Hilden, Germany). Enrichment of the mRNA (depletion of rRNA) was performed applying the RiboZero rRNA Removal Kit for Bacteria according to the manufacture’s protocol using 3 µg of RNA per sample. Library preparations for paired-end sequencing on the Illumina HiSeq 1500 platform were performed according to protocols provided by Illumina

characteristic: description

text: biofilm formation

characteristic: developmental stage

text: Bacillus amyloliquefaciens

characteristic: organism

text: Bacillus amyloliquefaciens

text: Bacillus amyloliquefaciens

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Bielefeld University CeBiTec

characteristic: INSDC center name

text: public

text: ArrayExpress

text: planktonic cells

text: Bacillus amyloliquefaciens

text: Bacillus amyloliquefaciens

text: Bacillus amyloliquefaciens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA GRIGNON

text: public

tag: Namespace:INRA GRIGNON

text: We report here the genome sequence of Brevibacterium aurantiacum 6(3), isolated from cheese. Sequencing was performed using Illumina MiSeq technology.

text: Brevibacterium aurantiacum

text: Brevibacterium aurantiacum

characteristic: strain

text: Draft genome sequence of Brevibacterium aurantiacum 6(3)


text: INRA GRIGNON

text: public

text: We report here the genome sequence of Brevibacterium aurantiacum 8(6), isolated from cheese. Sequencing was performed using Illumina MiSeq technology.

text: Brevibacterium aurantiacum

text: Brevibacterium aurantiacum

text: Draft genome sequence of Brevibacterium aurantiacum 8(6)


CECT 7639

text: UVEG

text: public

text: CECT 7639

characteristic: collection date

text: seawater

characteristic: environment (biome)

text: seawater

characteristic: environment (feature)

text: surface seawater cellected at Malvarrosa beach, Valencia, Spain

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Tropicibacter litoreus R37

text: Whole genome sequencing of Tropicibacter litoreus CECT 7639, type strain

characteristic: project name

text: Tropicibacter litoreus R37

text: Illumina Miseq

characteristic: sequencing method

text: CECT 7639

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DGU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: gut metagenome

characteristic: organism

text: gut metagenome

text: FL and gut microbiota


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

characteristic: description

text: Bangladesh

characteristic: isolation site

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: title

characteristic: year isolated


text: STATENS SERUM INSTITUT

text: public

text: Denmark

text: Staphylococcus aureus

text: Staphylococcus aureus


text: EMBL

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: 16S metabarcoding data of global soil samples

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: Estonia

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample


text: EMBL

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: soil

text: Morocco

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: soil

text: Thailand

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: soil

text: Russia

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: soil

text: Greece

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Nigeria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: soil

text: USA

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: soil

text: Georgia

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Iran

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: soil

text: China

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: soil

text: Australia

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample


CIP 102111

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA GRIGNON

text: public

text: CIP 102111

text: We report here the genome sequence of Brevibacterium casei CIP 102111, isolated from cheese. Sequencing was performed using Illumina MiSeq technology.

characteristic: description

text: Brevibacterium casei CIP 102111

text: Brevibacterium casei CIP 102111

text: CIP 102111

characteristic: strain

text: Draft genome sequence of Brevibacterium casei CIP 102111

characteristic: title


ATCC 49514

text: INRA GRIGNON

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ATCC 49514

text: We report here the genome sequence of Brevibacterium iodinum ATCC 49514, isolated from milk. Sequencing was performed using Illumina MiSeq technology.

text: Brevibacterium iodinum ATCC 49514

text: Brevibacterium iodinum ATCC 49514

text: ATCC 49514

text: Draft genome sequence of Brevibacterium iodinum ATCC 49514


text: public

tag: Namespace:Research Institute of Organic Agriculture

text: BC trial

characteristic: common name

text: soil metagenome

text: soil metagenome


characteristic: ENA-CHECKLIST

text: Research Institute of Organic Agriculture

text: public

text: BC trial

text: soil metagenome

text: soil metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: soil metagenome

text: soil metagenome


characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

tag: Namespace:Programme Carte dâ€™Identite des Tumeurs

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: two tumor sampling methods from patients with PDAC: 1- surgery for patients with tumor size < 2cm, and 2- Endoscopic Ultrasound-Guided Fine-Needle Aspiration (EUS-FNA) for patients with tumor size > 2cm. this information is given by the \Resectable\ variable. For operated patients (with surgery), tumor tissues were xenografted directly. However, biopsy tissues were grown in culture for 1 or 2 days, before transplanted to the nude mouse. The final xenograft samples were collected from mouse when tumors reached a size of 1 cm. The \Differentiation\, \Fibrosis\, \Inflammation\ information are estimated on the collected xenograft tissues. miRNA-Seq libraries are performed from at least 1ug of extracted total RNA with a RIN greater than 7. Before starting, total RNAs are purified with Trizol-GT & miRNeasy kit wich allows the selection of the small RNA fraction less than 100b.

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

characteristic: organism status

text: false

characteristic: resectable

text: Homo sapiens

text: female

characteristic: sex

unit: month

characteristic: survival time

text: pancreatic cancer cells grown in nude mouse

characteristic: xenograft

text: false

characteristic: xenograft CIMPclass

text: basal

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: true

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Programme Carte dâ€™Identite des Tumeurs

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: female

characteristic: title

text: false

text: basal

text: non-mucinous

text: false

text: false


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

characteristic: organism status

text: false

characteristic: resectable

text: Homo sapiens

text: male

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: false

characteristic: xenograft CIMPclass

text: basal

text: oncocyte

text: false

text: false


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: not available

text: not available

text: Homo sapiens

text: male

text: not available

text: false

text: basal

characteristic: xenograft MultiOmicsClassification

text: not available

characteristic: xenograft differentiation

text: not available

characteristic: xenograft fibrosis

text: not available

characteristic: xenograft inflammation


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: female

characteristic: title

text: false

text: classical

text: non-mucinous

text: true

text: true


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: alive

text: true

text: Homo sapiens

text: female

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: mucinous

text: false

text: false


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: male

text: true

text: classical

characteristic: xenograft MultiOmicsClassification

text: mucinousnon-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: true

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alive

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: female

characteristic: title

text: false

text: outlier

text: non-mucinous

text: false

text: false


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

text: true

text: Homo sapiens

text: female

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: false

characteristic: xenograft CIMPclass

text: classical

text: oncocyte

text: false

text: false


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: true

text: Homo sapiens

text: female

text: true

text: classical

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: false

characteristic: xenograft inflammation


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: false

characteristic: resectable

text: Homo sapiens

text: male

characteristic: title

text: false

text: outlier

text: mucinous

text: false

text: false


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: true

text: Homo sapiens

text: male

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: mucinous

text: false

text: false


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: alive

text: true

text: Homo sapiens

text: female

text: false

text: classical

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: true

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alive

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: female

characteristic: title

text: true

text: classical

text: mucinous

text: true

text: true


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: alive

text: true

text: Homo sapiens

text: female

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: non-mucinous

text: true

text: true


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: alive

text: true

text: Homo sapiens

text: male

text: false

text: classical

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: true

characteristic: xenograft inflammation


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: female

characteristic: title

text: false

text: basal

text: non-mucinous

text: false

text: false


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: true

text: Homo sapiens

text: male

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: non-mucinous

text: true

text: true


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: alive

text: false

text: Homo sapiens

text: male

text: false

text: basal

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: false

characteristic: xenograft fibrosis

text: false

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: alive

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: male

characteristic: title

text: false

text: basal

text: oncocyte

text: true

text: false


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: female

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: oncocyte

text: true

text: true


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: female

text: false

text: basal

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: false

characteristic: xenograft inflammation


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: true

characteristic: resectable

text: Homo sapiens

text: male

characteristic: title

text: false

text: classical

text: non-mucinous

text: true

text: false


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: male

characteristic: sex

characteristic: survival time

characteristic: xenograft

text: true

characteristic: xenograft CIMPclass

text: classical

text: non-mucinous

text: true

text: true


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: ProportionMurineRNA

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dead

text: false

text: Homo sapiens

text: male

text: true

text: classical

characteristic: xenograft MultiOmicsClassification

text: non-mucinous

characteristic: xenograft differentiation

text: true

characteristic: xenograft fibrosis

text: false

characteristic: xenograft inflammation


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dead

characteristic: organism status

text: false

characteristic: resectable

text: Homo sapiens

text: male

characteristic: title

text: false

text: classical

text: non-mucinous

text: true

text: false


Inoculum

characteristic: ENA-FIRST-PUBLIC

text: WUR

characteristic: INSDC last update

text: public

text: Inoculum

characteristic: collection date

text: Mechanisms of ethanol use in chain elongation

characteristic: description

text: Continuously stirred anaerobic reactor

characteristic: isolation source

text: metagenome

text: metagenome


Granular sludge at 2.5 L/L/d (R1go)

characteristic: ENA-CHECKLIST

text: WUR

text: public

text: Granular sludge at 2.5 L/L/d (R1go)

text: Continuously stirred anaerobic reactor

text: metagenome

text: metagenome


Suspended sludge at 2.5 L/L/d (R1lo)

characteristic: ENA-LAST-UPDATE

text: WUR

text: public

text: Suspended sludge at 2.5 L/L/d (R1lo)

text: Continuously stirred anaerobic reactor

text: metagenome

text: metagenome


Granular sludge at 1 L/L/d (R1g)

characteristic: External Id

text: WUR

text: public

text: Granular sludge at 1 L/L/d (R1g)

text: Continuously stirred anaerobic reactor

text: metagenome

text: metagenome


Suspended sludge at 1 L/L/d (R1l)

text: WUR

characteristic: INSDC center name

text: public

text: Suspended sludge at 1 L/L/d (R1l)

text: Continuously stirred anaerobic reactor

text: metagenome

text: metagenome


Granular sludge at 0 L/L/d (R1gx)

text: WUR

characteristic: INSDC first public

text: public

text: Granular sludge at 0 L/L/d (R1gx)

text: Continuously stirred anaerobic reactor

text: metagenome

text: metagenome


Suspended sludge at 0 L/L/d (R1lx)

text: WUR

text: public

characteristic: INSDC status

text: Suspended sludge at 0 L/L/d (R1lx)

text: Continuously stirred anaerobic reactor

text: metagenome

text: metagenome


MG1655 exponential

text: public

characteristic: SRA accession

text: MG1655 exponential

tag: Namespace:Division of Biosciences, Brunel University

text: MG1655 backgrounds carrying a pheA::oriX-cat ectopic origin

text: Escherichia coli str. K-12 substr. MG1655

text: oriX data (Run 5)


MG1655 stationary

text: Division of Biosciences, Brunel University

text: public

text: MG1655 stationary

characteristic: Submitter Id

text: Stationary MG1655 sample

text: oriX data (Run 5)


oriC+ oriX

text: public

text: oriC+ oriX

text: oriC+ oriX exponential sample

characteristic: organism

text: oriX data (Run 5)


oriC- oriX

text: public

text: oriC- oriX

text: oriC- oriX exponential sample

text: oriX data (Run 5)


text: The Francis Crick Institute

text: public

tag: Namespace:The Francis Crick Institute

text: ArrayExpress

characteristic: broker name

text: neural crest-derived cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: tdT+ cells were separated using the FACSAria Fusion (BD Biosciences) cell sorter with the 100µm nozzle at 26psi and collected in 2% FBS in OptiMEM (Life Technologies). Dead cells were excluded with a cell viability dye (Zombie Aqua, BioLegend) that was added to the single cell suspension (2 ng/ml). The Fluidigm C1 automated microfluidic system was used to randomly capture 192 individual cells into 5-10µm chips. SER93|tdT is a transgenic line Sox10-CreERT2;Rosa26-Tomato (R26-CAG-Ai14). Information regarding its generation can be found in Laranjeira et al., 2011. SER93|tdT embryos were exposed to Tamoxifen at E12.0 in utero (100µg/gr of dam body weight) and harvested 24 hours later. Individual small intestines were digested with Dispase/Collagenase (1 mg/ml, Roche, 296638) at 37°C for 15 minutes and manually triturated to obtain a single-cell suspension. The SMARTer Ultralow RNA kit (Clontech #634833) was used to reverse transcribe poly (A) RNA and amplify cDNA. ERCC spike-ins (Life Technologies #4456740) were added at a dilution of 1:80000. cDNA concentration of each cell sample was quantified using the Promega Quantifluor dsDNA on Glomax system and quality of random samples was checked on high-sensitivity DNA chip on Agilent Bioanalyser 2100. Amplified cDNA (0.125-0.375 ng) was used for sequencing libraries with the Illumina Nextera XT DNA kit (Illumina #FC-131-1096).

text: embryonic day 12.5

characteristic: developmental stage

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

text: tdTomato positive

characteristic: phenotype

text: Mus musculus

text: tamoxifen at embryonic day 12

characteristic: stimulus

text: mixed CBA and C57BL/10

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSHTM

characteristic: INSDC last update

text: public

text: Kingella denitrificans

text: Kingella denitrificans

text: Kingella dentrificans GC77

characteristic: title


text: LSHTM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: K. denitrificans GC77 draft assembly

characteristic: description

text: Kingella denitrificans

characteristic: organism

text: Kingella denitrificans

text: K. denitrificans GC77 draft assembly


text: VTT

text: public

characteristic: collection date

text: uncultured bacteria

characteristic: common name

text: stainless steel, brackish water

characteristic: environment (biome)

text: brackish water

characteristic: environment (feature)

text: stainless steel

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: uncultured bacterium

text: DETER

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DGU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: gut metagenome

text: gut metagenome

text: FL and gut microbiota

characteristic: title


text: VTT

text: public

characteristic: collection date

text: uncultured archaeon

characteristic: common name

characteristic: description

text: stainless steel, brackish sea water

characteristic: environment (biome)

text: brackish sea water

characteristic: environment (feature)

text: stainless steel

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: uncultured archaeon

characteristic: organism

text: DETER

text: uncultured archaeon

text: Ion Torrent


CO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FUDAN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CO

tag: Namespace:FUDAN UNIVERSITY

text: biogas reactor

text: sludge

text: water

text: China

text: 31°.2′ N

text: 121°.4′ E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: metagenome

text: CO biomethanation

characteristic: project name

text: metagenome

text: Illumina hiseq 2000

characteristic: sequencing method

text: CO biomethanation


Control

text: FUDAN UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Control

characteristic: Submitter Id

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: sludge

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

text: 31°.2′ N

text: 121°.4′ E

text: metagenome

text: microbial mat/biofilm

text: metagenome

text: CO biomethanation

text: metagenome

text: Illumina hiseq 2000

text: CO biomethanation

characteristic: title


text: Lung

text: Cancer cells

characteristic: ArrayExpress-IMMUNOPRECIPITATE

text: Lung

text: Cancer cells

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Homo Sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: human

characteristic: common name

text: Male

characteristic: gender

text: Homo sapiens

characteristic: organism

text: Cancer cells

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


text: Lung

text: Cancer cells

text: Lung

text: Cancer cells

text: male

text: Homo Sapiens

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Male

text: Homo sapiens

text: Cancer cells

text: Homo sapiens


oriC+ oriX rpoB*35

text: public

text: oriC+ oriX rpoB*35

text: oriC+ oriX rpoB*35 exponential sample

characteristic: description

text: oriX data (run 5)

characteristic: title


oriC- oriX rpoB*35

characteristic: ENA-CHECKLIST

text: public

text: oriC- oriX rpoB*35

text: oriC- oriX rpoB*35 exponential sample

text: oriX data (run 5)


oriC+ oriX tus

characteristic: ENA-FIRST-PUBLIC

text: public

text: oriC+ oriX tus

text: oriC+ oriX tus exponential sample

text: oriX data (run 5)


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


E-MTAB-5480:1x conc pool of cells

characteristic: External Id

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5480:1x conc pool of cells

tag: Namespace:Wellcome Trust Sanger Institute

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: An equal mix of Control Brain RNA (3µl; FirstChoice Human Brain Total RNA; #AM7962) and ERCC spikes (3µl 1:4 dilution; #4456653) was mixed to form ‘2x Control RNA+ERCC’ master mix. We further diluted ‘2x Control RNA+ERCC’ to ‘1x Control RNA+ERCC’ with PCR grade water. We made two single cell master mix preparation using 3µl of ‘2x Control RNA+ERCC’ and ‘1x Control RNA+ERCC’ respectively instead of single cell suspension (adjusted with 34.4 µl Nuclease-Free water). The Single Cell Gel Bead kit (#120217), Single cell chip kit (#120219) and Single cell library kit (#120218) were used along with 10x GemCode Single Cell Instrument as per manufacturer specifications and manuals (Document # CG00011; Revision B).

characteristic: flow cell id

text: Homo sapiens

text: Homo sapiens

text: 1x Spike-ins and Control RNA concentration

characteristic: protocol

text: Homo sapiens

text: 1x conc pool of cells


E-MTAB-5480:2x conc pool of cells

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5480:2x conc pool of cells

text: ArrayExpress

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: 2x Spike-ins and Control RNA concentration

text: Homo sapiens

text: 2x conc pool of cells


CECT 7927

text: UVEG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CECT 7927

characteristic: collection date

text: host associated

characteristic: environment (biome)

text: mangrove

characteristic: environment (feature)

text: mangrove-associated wild rice

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Vibrio mangrovi

text: Whole genome sequencing of Vibrio mangrovi CECT 7927, type strain

characteristic: project name

text: Vibrio mangrovi

text: Illumina Miseq

characteristic: sequencing method

text: CECT 7927

characteristic: strain

text: Vibrio mangrovi CECT 7927, type strain


MM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF DELHI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MM

tag: Namespace:UNIVERSITY OF DELHI

characteristic: Submitter Id

text: Emticicia sp. MM was reconstructed from metagenome sequence data of Water samples collected from a hot spring, Manikaran, India. This genotype includes one chromosome and its four contigs.

characteristic: description

text: hot spring

text: Neutral hot spring

text: water

text: India

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Manikaran

characteristic: geographic location (region and locality)

text: metagenome

text: Emticicia oligotrophica

text: Manikaran hot spring metagenomics

text: Emticicia oligotrophica

text: Illumina GAII

text: Emticicia sp. MM

characteristic: title

text: water

characteristic: water environmental package


text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: stainless steel, brackish sea water

characteristic: environment (biome)

text: brackish sea water

characteristic: environment (feature)

text: stainless steel

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: uncultured fungus

characteristic: organism

text: DETER

text: uncultured fungus

text: Ion Torrent


Wild-type Col-0 rep1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Wild-type Col-0 rep1

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


Wild-type Col-0 rep2

text: JIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Wild-type Col-0 rep2

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin

characteristic: title


Wild-type Col-0 rep3

text: JIC

text: public

text: Wild-type Col-0 rep3

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


Wild-type Col-0 +IAA rep1

text: JIC

text: public

text: Wild-type Col-0 +IAA rep1

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


Wild-type Col-0 +IAA rep2

text: JIC

text: public

text: Wild-type Col-0 +IAA rep2

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


Wild-type Col-0 +IAA rep3

text: JIC

text: public

text: Wild-type Col-0 +IAA rep3

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


ETT rep1

text: JIC

text: public

text: ETT rep1

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


ETT rep2

text: JIC

text: public

text: ETT rep2

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


ETT rep3

text: JIC

text: public

text: ETT rep3

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


ETT +IAA rep1

text: JIC

text: public

text: ETT +IAA rep1

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


ETT +IAA rep2

text: JIC

text: public

text: ETT +IAA rep2

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


ETT +IAA rep3

text: JIC

text: public

text: ETT +IAA rep3

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: RNA-seq +/- auxin


text: Tasmanian devil

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Tasmanian devil

text: Sarcophilus harrisii

text: Sarcophilus harrisii

characteristic: subject id


text: male

characteristic: ArrayExpress-SEX

text: Tasmanian devil

text: SC

text: public

text: Tasmanian devil

text: Male

characteristic: gender

text: Sarcophilus harrisii

text: Sarcophilus harrisii