characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: title

text: not provided


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

text: Scotland

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

characteristic: title

text: not provided


text: Pectin

characteristic: Carbohydrates

characteristic: ENA first public

text: Control

characteristic: Group

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

characteristic: INSDC center name

text: public

text: Methane producer

characteristic: MethaneProducer

characteristic: Participant

text: Sample

characteristic: SampleType

characteristic: Time

characteristic: collection date

characteristic: description

text: Netherlands

text: human gut metagenome

characteristic: organism

text: human gut metagenome


text: Pectin

characteristic: ENA-CHECKLIST

text: BES

text: public

characteristic: INSDC status

text: Methane producer

characteristic: SRA accession

text: Sample

characteristic: Submitter Id

text: Netherlands

characteristic: geographic location (country and/or sea)

text: human gut metagenome

text: human gut metagenome


text: Pectin

text: Sulphate

text: public

text: Methane producer

text: Sample

text: Netherlands

text: human gut metagenome

text: human gut metagenome

characteristic: title


text: Mixture

characteristic: Carbohydrates

text: Control

text: public

text: Methane producer

text: Sample

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Mixture

characteristic: ENA first public

text: BES

text: public

text: Methane producer

text: Sample

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Mixture

text: Sulphate

characteristic: Group

text: public

text: Methane producer

text: Sample

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Pectin

text: Control

characteristic: INSDC center name

text: public

text: Non-methane producer

text: Sample

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Pectin

text: M.smithii

text: public

text: Non-methane producer

characteristic: MethaneProducer

text: Sample

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Pectin

text: Sulphate

text: public

text: Non-methane producer

characteristic: Participant

text: Sample

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Mixture

text: Control

text: public

text: Non-methane producer

text: Sample

characteristic: SampleType

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Mixture

text: M.smithii

text: public

text: Non-methane producer

text: Sample

characteristic: Time

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Mixture

text: Sulphate

text: public

text: Non-methane producer

text: Sample

characteristic: collection date

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Pectin

text: BES

text: public

text: Non-methane producer

text: Sample

characteristic: description

text: Netherlands

text: human gut metagenome

text: human gut metagenome


text: Mixture

text: BES

text: public

text: Non-methane producer

text: Sample

text: Netherlands

text: human gut metagenome

characteristic: organism

text: human gut metagenome


characteristic: ENA-CHECKLIST

text: APC Microbiome Institute

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: metaWRAP

characteristic: binning parameters

characteristic: binning software

text: aquatic

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run SRR26115692 of study SRP284048.

text: sediment

characteristic: environmental medium

text: China

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: bioreactor metagenome

text: sediment

characteristic: local environmental context

text: bioreactor metagenome

characteristic: metagenomic source

text: uncultured Comamonas sp.

text: Illumina NovaSeq 6000 sequencing: JL43

characteristic: project name

characteristic: sample derived from

text: uncultured Comamonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: JL37.bin.1_1706967110


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: APC Microbiome Institute

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: metaWRAP

text: aquatic

characteristic: collection date

text: This sample represents a binned metagenome assembled from the metagenomic run SRR26115691 of study SRP284048.

characteristic: description

text: sediment

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: bioreactor metagenome

text: sediment

text: bioreactor metagenome

text: uncultured Brevundimonas sp.

characteristic: organism

text: Illumina NovaSeq 6000 sequencing: JL43

text: uncultured Brevundimonas sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: binned metagenome: JL38.bin.11_1706967110

characteristic: title


text: APC Microbiome Institute

text: public

text: metaWRAP

characteristic: binning parameters

characteristic: binning software

text: aquatic

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic runs SRR26115688,SRR26115689,SRR26115690,SRR26115691,SRR26115692,SRR26115693,SRR26115694 of study SRP284048.

text: sediment

characteristic: environmental medium

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: bioreactor metagenome

text: sediment

characteristic: local environmental context

text: bioreactor metagenome

characteristic: metagenomic source

text: Pseudomonas citronellolis

text: Illumina NovaSeq 6000 sequencing: JL43

characteristic: project name

text: SAMN37474768,SAMN37474767,SAMN37474766,SAMN37474765,SAMN37474764,SAMN37474763,SAMN37474762

text: Pseudomonas citronellolis

text: Illumina NovaSeq 6000

text: multi-marker approach

text: binned metagenome: ql.bin.25_1706967111


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: APC Microbiome Institute

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

characteristic: assembly software

text: metaWRAP

text: aquatic

characteristic: collection date

characteristic: description

text: sediment

text: China

text: metagenome-assembled genome

text: bioreactor metagenome

text: sediment

text: bioreactor metagenome

text: uncultured Thermomonas sp.

text: Illumina NovaSeq 6000 sequencing: JL43

characteristic: sample derived from

text: uncultured Thermomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: ql.bin.12_1706967111


text: APC Microbiome Institute

text: public

text: metaWRAP

characteristic: binning parameters

characteristic: binning software

text: aquatic

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: sediment

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: bioreactor metagenome

text: sediment

text: bioreactor metagenome

text: uncultured Dermatophilaceae bacterium

characteristic: organism

text: Illumina NovaSeq 6000 sequencing: JL43

text: uncultured Dermatophilaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: binned metagenome: ql.bin.7_1706967111

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: APC Microbiome Institute

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: metaWRAP

text: aquatic

characteristic: collection date

text: This sample represents a binned metagenome assembled from the metagenomic run SRR26115688 of study SRP284048.

characteristic: description

text: sediment

text: China

text: metagenome-assembled genome

text: bioreactor metagenome

text: sediment

characteristic: local environmental context

text: bioreactor metagenome

characteristic: metagenomic source

text: uncultured Intrasporangium sp.

text: Illumina NovaSeq 6000 sequencing: JL43

characteristic: project name

text: uncultured Intrasporangium sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: binned metagenome: JL51.bin.3_1706967112


text: APC Microbiome Institute

text: public

text: metaWRAP

characteristic: binning parameters

characteristic: binning software

text: aquatic

characteristic: broad-scale environmental context

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run SRR26115693 of study SRP284048.

text: sediment

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: bioreactor metagenome

text: sediment

text: bioreactor metagenome

text: Rhodococcus ruber

text: Illumina NovaSeq 6000 sequencing: JL43

characteristic: sample derived from

text: Rhodococcus ruber

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: binned metagenome: JL36.bin.8_1706967113


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Chlamydophila abortus

characteristic: common name

text: Chlamydia abortus

characteristic: organism

text: Chlamydia abortus

characteristic: strain

characteristic: title


text: Leishmania adleri

characteristic: ArrayExpress-Species

text: SC

text: public

text: MARV_ET_75_HO174-sc-2011-07-04T13:40:33Z-1195666

text: Leishmania adleri

text: Leishmania adleri

text: Leishmania adleri


text: Leishmania guyanensis

characteristic: ENA-CHECKLIST

text: SC

text: public

text: MCAN_CO_1985_CL_085-sc-2012-03-14T13:57:12Z-1379534

text: Leishmania guyanensis

text: Leishmania guyanensis

characteristic: sample description

text: Leishmania guyanensis


text: Leishmania naiffi

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: MCAN_CO_1986_CL_223-sc-2012-02-23T12:46:50Z-1368009

text: Leishmania naiffi

text: Leishmania naiffi

text: Leishmania naiffi


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Whole Genome DNA

text: Streptococcus pneumoniae

text: pneumococcus


text: 31003929; 31092817

text: Streptococcus pneumoniae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: NLD

text: Streptococcus pneumoniae

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Streptococcus pneumoniae

text: Whole Genome DNA

text: Streptococcus pneumoniae

text: pneumococcus

type: AMR curated data - CABBAGE

value: erythromycin

value: susceptible

value: Streptococcus pneumoniae

value: chloramphenicol

value: cefotaxime

value: penicillin

value: tetracycline


text: 31003929; 31092817

text: Streptococcus pneumoniae

text: SC

text: public

characteristic: INSDC status

text: NLD

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: Streptococcus pneumoniae

text: Whole Genome DNA

text: Streptococcus pneumoniae

text: pneumococcus


M. agilis

text: BIK-F

text: public

text: M. agilis

text: Agile wallaby

characteristic: common name

text: Macropus agilis

characteristic: organism

text: Macropus agilis

text: Kangaroo and wallaby genomes

type: has member


M. bernadus

text: BIK-F

text: public

text: M. bernadus

text: black wallaroo

text: Macropus bernardus

text: Macropus bernardus

text: Kangaroo and wallaby genomes

characteristic: title


M. giganteus

characteristic: ENA-CHECKLIST

text: BIK-F

text: public

text: M. giganteus

text: eastern gray kangaroo

text: Macropus giganteus

text: Macropus giganteus

text: Kangaroo and wallaby genomes


M. irma

text: BIK-F

text: public

text: M. irma

text: Macropus irma

text: Macropus irma

text: Kangaroo and wallaby genomes


M. parma

text: BIK-F

text: public

text: M. parma

text: Parma wallaby

text: Macropus parma

text: Macropus parma

text: Kangaroo and wallaby genomes


M. rufogriseus

text: BIK-F

text: public

text: M. rufogriseus

text: red-necked wallaby

text: Macropus rufogriseus

text: Macropus rufogriseus

text: Kangaroo and wallaby genomes


M. rufus

text: BIK-F

text: public

text: M. rufus

text: red kangaroo

text: Macropus rufus

text: Macropus rufus

text: Kangaroo and wallaby genomes


M. robustus

text: BIK-F

text: public

text: M. robustus

text: wallaroo

text: Macropus robustus

text: Macropus robustus

text: Kangaroo and wallaby genomes


W. bicolor

text: BIK-F

text: public

text: W. bicolor

text: swamp wallaby

text: Wallabia bicolor

text: Wallabia bicolor

text: Kangaroo and wallaby genomes


L. conspicillatus

text: BIK-F

text: public

text: L. conspicillatus

text: spectacled hare-wallaby

text: Lagorchestes conspicillatus

text: Lagorchestes conspicillatus

text: Kangaroo and wallaby genomes


P. xanthopus

text: BIK-F

text: public

text: P. xanthopus

text: ring-tailed rock wallaby

text: Petrogale xanthopus

text: Petrogale xanthopus

text: Kangaroo and wallaby genomes


9947A BAM Nanopore1

text: GHENT UNIVERSITY

text: public

text: 9947A BAM Nanopore1

tag: Namespace:GHENT UNIVERSITY

text: human

text: A BAM file containing the mapped subreads sequences of the SNPforID loci. The reference against which the data was mapped contained the SNP and 25bp on either side of the SNP.

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: 9947A BAM Nanopore


Cubi

characteristic: ENA-FIRST-PUBLIC

text: BIHP, INSTITUT PASTEUR

text: public

text: Cubi

tag: Namespace:BIHP, INSTITUT PASTEUR

text: Plasmodium cynomolgi strain Mulligan/NIH

text: Hypnozoite transcriptomics


characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: Actinomyces sp. Marseille-P3257

text: Actinomyces sp. Marseille-P3257

characteristic: strain

text: Actinomyces mediterraneensis genome


characteristic: External Id

text: University of Dundee

characteristic: INSDC center name

text: public

tag: Namespace:University of Dundee

text: baker's yeast

text: Nucleosomes are not distributed randomly over the genomes of eukaryotes, but in general are aligned with respect to regulatory elements. In addition, the spacing between nucleosomes is also not random, with distinct nucleosome-to-nucleosome distances evident in different tissues and in different species. Abnormal inter-nucleosome spacing has been associated with increased intragenic transcription, and changes to nucleosome positioning at promoters results in changes to gene expression. ATP-dependent chromatin remodelling enzymes act to organise nucleosomes over genomes with partial redundancy. For example, the Isw1 and Chd1 enzymes both play a major role in positioning nucleosomes over coding regions.

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Structural reorganization of the chromatin remodeling enzyme Chd1 upon engagement with nucleosomes.


text: URMITE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Peptoniphilus sp. Marseille-P3195

text: Peptoniphilus sp. Marseille-P3195

text: Peptoniphilus urinimassiliensis genome


text: JUSTUS LIEBIG UNIVERSITAT

text: public

tag: Namespace:JUSTUS LIEBIG UNIVERSITAT

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Clinical isolate

text: Wound infection

characteristic: isolation source

text: Staphylococcus aureus subsp. aureus

text: Staphylococcus aureus subsp. aureus

text: Staphylococcus aureus clinical isolate EDCC5055 (DSM 28763)


Nitrospira sp. strain ND1

text: WASEDA university

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Nitrospira sp. strain ND1

tag: Namespace:WASEDA university

characteristic: Submitter Id

text: pure strain

characteristic: cell type

text: Japan

text: activated sludge

text: Nitrospira sp. ND1

text: Nitrospira sp. ND1

text: Genome sequence of Nitrospira sp. strain ND1


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Santiria apiculata leaf associated bacteria

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: leaves

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: endophyte bacterium 01

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Santiria apiculata associated microbes

characteristic: project name

text: endophyte bacterium 01

text: pyrosequencing

characteristic: sequencing method

text: Santira leaf bac rep1

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: subtropical rainforest

text: forest

text: leaves

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: endophyte bacterium 02

text: plant-associated

text: Santiria apiculata associated microbes

text: endophyte bacterium 02

text: pyrosequencing

text: Santira leaf bac rep2


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: leaves

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: endophyte bacterium EMA109

text: plant-associated

text: Santiria apiculata associated microbes

text: endophyte bacterium EMA109

text: pyrosequencing

text: Santira leaf bac rep3


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: subtropical rainforest

text: forest

text: leaves

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: endophyte bacterium EMA109

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Santiria apiculata associated microbes

characteristic: project name

text: endophyte bacterium EMA109

text: pyrosequencing

characteristic: sequencing method

text: Santira stem bac rep1

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: subtropical rainforest

text: forest

text: leaves

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: endophyte bacterium EMA117

text: plant-associated

text: Santiria apiculata associated microbes

text: endophyte bacterium EMA117

text: pyrosequencing

text: Santiria stem bac rep2


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: leaves

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: endophyte bacterium EMA134

text: plant-associated

text: Santiria apiculata associated microbes

text: endophyte bacterium EMA134

text: pyrosequencing

text: Santiria stem bac rep3


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: subtropical rainforest

text: forest

text: leaves

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: endophyte bacterium EMA15

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Santiria apiculata associated microbes

characteristic: project name

text: endophyte bacterium EMA15

text: pyrosequencing

characteristic: sequencing method

text: Santira root bac rep1

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: subtropical rainforest

text: forest

text: leaves

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: endophyte bacterium EMA176

text: plant-associated

text: Santiria apiculata associated microbes

text: endophyte bacterium EMA176

text: pyrosequencing

text: Santiria root bac rep2


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: leaves

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: soil bacterium 01G-01

text: plant-associated

text: Santiria apiculata associated microbes

text: soil bacterium 01G-01

text: pyrosequencing

text: Santiria root bac rep3


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Santiria apiculata associated bacteria

text: subtropical rainforest

text: forest

text: leaves

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil bacterium 01G-08

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Santiria apiculata associated microbes

characteristic: project name

text: soil bacterium 01G-08

text: pyrosequencing

characteristic: sequencing method

text: Santira soil bac rep1

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: subtropical rainforest

text: forest

text: leaves

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: soil bacterium 01G-09

text: plant-associated

text: Santiria apiculata associated microbes

text: soil bacterium 01G-09

text: pyrosequencing

text: Santira soil bac rep2


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plant endophytes and soil bacteria

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: plant organs and soil

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: endophyte bacterium 01

text: plant-associated

text: plant associated microbes

text: endophyte bacterium 01

text: pyrosequencing

text: Microdesmis leaf bac rep1


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: endophyte bacterium 02

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: plant associated microbes

characteristic: project name

text: endophyte bacterium 02

text: pyrosequencing

characteristic: sequencing method

text: Microdesmis leaf bac rep2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: endophyte bacterium EMA109

text: plant-associated

text: plant associated microbes

text: endophyte bacterium EMA109

text: pyrosequencing

text: Microdesmis leaf bac rep3


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plant endophytes and soil bacteria

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: plant organs and soil

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: endophyte bacterium EMA117

text: plant-associated

text: plant associated microbes

text: endophyte bacterium EMA117

text: pyrosequencing

text: Microdesmis stem bac rep1


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: endophyte bacterium EMA134

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: plant associated microbes

characteristic: project name

text: endophyte bacterium EMA134

text: pyrosequencing

characteristic: sequencing method

text: Microdesmis sten bac rep2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: endophyte bacterium EMA15

text: plant-associated

text: plant associated microbes

text: endophyte bacterium EMA15

text: pyrosequencing

text: Microdesmis sten bac rep3


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plant endophytes and soil bacteria

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: plant organs and soil

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: endophyte bacterium EMA176

text: plant-associated

text: plant associated microbes

text: endophyte bacterium EMA176

text: pyrosequencing

text: Microdesmis root bac rep1


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: endophyte bacterium EMA177

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: plant associated microbes

characteristic: project name

text: endophyte bacterium EMA177

text: pyrosequencing

characteristic: sequencing method

text: Microdesmis root bac rep2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: endophyte bacterium EMA68

text: plant-associated

text: plant associated microbes

text: endophyte bacterium EMA68

text: pyrosequencing

text: Microdesmis root bac rep3


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plant endophytes and soil bacteria

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: plant organs and soil

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: rhizosphere bacterium

text: plant-associated

text: plant associated microbes

text: rhizosphere bacterium

text: pyrosequencing

text: Microdesmis soil bac rep1


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere bacterium GWR01

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: plant associated microbes

characteristic: project name

text: rhizosphere bacterium GWR01

text: pyrosequencing

characteristic: sequencing method

text: Microdesmis soil bac rep2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere bacterium GWR02

text: plant-associated

text: plant associated microbes

text: rhizosphere bacterium GWR02

text: pyrosequencing

text: Microdesmis soil bac rep3


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plant endophytes and soil bacteria

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: plant organs and soil

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: bacterium

text: plant-associated

text: plant associated microbes

text: bacterium

text: pyrosequencing

text: rothmannia leaf bac rep1


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: bacterium #WM-A1

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: plant associated microbes

characteristic: project name

text: bacterium #WM-A1

text: pyrosequencing

characteristic: sequencing method

text: rothmannia leaf bac rep2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: bacterium #WM-A3

text: plant-associated

text: plant associated microbes

text: bacterium #WM-A3

text: pyrosequencing

text: rothmannia leaf bac rep3


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plant endophytes and soil bacteria

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: plant organs and soil

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: bacterium #WM-A4

text: plant-associated

text: plant associated microbes

text: bacterium #WM-A4

text: pyrosequencing

text: rothmannia stem bac rep1


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: bacterium #WM-A5

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: plant associated microbes

characteristic: project name

text: bacterium #WM-A5

text: pyrosequencing

characteristic: sequencing method

text: rothmannia stem bac rep2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: bacterium #WM-A6

text: plant-associated

text: plant associated microbes

text: bacterium #WM-A6

text: pyrosequencing

text: rothmannia stem bac rep3


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plant endophytes and soil bacteria

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: plant organs and soil

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: bacterium #WM-A7

text: plant-associated

text: plant associated microbes

text: bacterium #WM-A7

text: pyrosequencing

text: rothmannia root bac rep1


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: bacterium #WM-B15

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: plant associated microbes

characteristic: project name

text: bacterium #WM-B15

text: pyrosequencing

characteristic: sequencing method

text: rothmannia root bac rep2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: root bacterium JGI BulkP12A06

text: plant-associated

text: plant associated microbes

text: root bacterium JGI BulkP12A06

text: pyrosequencing

text: rothmannia root bac rep3


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plant endophytes and soil bacteria

characteristic: description

text: subtropical rainforest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: plant organs and soil

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: rhizosphere bacterium GWR09

text: plant-associated

text: plant associated microbes

text: rhizosphere bacterium GWR09

text: pyrosequencing

text: rothmannia soil bac rep1


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere bacterium GWR08

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: plant associated microbes

characteristic: project name

text: rhizosphere bacterium GWR08

text: pyrosequencing

characteristic: sequencing method

text: rothmannia soil bac rep2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Plant endophytes and soil bacteria

text: subtropical rainforest

text: forest

text: plant organs and soil

text: Malaysia

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere bacterium GWR07

text: plant-associated

text: plant associated microbes

text: rhizosphere bacterium GWR07

text: pyrosequencing

text: rothmannia soil bac rep3


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Santiria plant associated microbes

characteristic: description

text: subtropical forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: plant

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (latitude)

text: mimarks-survey

text: rhizosphere bacterium GWR05

text: plant-associated

text: plant associated microbes diversity and composition

text: rhizosphere bacterium GWR05

text: pyrosequencing

text: Santiria soil bac rep3


characteristic: ENA-FIRST-PUBLIC

text: Poznan University Of Life Scienes

text: public

tag: Namespace:Poznan University Of Life Scienes

text: dog

characteristic: common name

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: Case dog with DSD

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Poznan University Of Life Scienes

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Control dog 1 without DSD


text: Poznan University Of Life Scienes

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Control dog without DSD


R

characteristic: ENA-CHECKLIST

text: NEIKER TECNALIA

text: public

characteristic: SRA accession

text: R

tag: Namespace:NEIKER TECNALIA

text: Escherichia coli

text: Recipient strain

text: Escherichia coli

text: Escherichia coli

text: Recipient strain genome


text: NEIKER TECNALIA

text: public

characteristic: Submitter Id

text: Escherichia coli

text: Antibiotic resistant strain 1-PAPER-CHL

characteristic: description

text: Escherichia coli

text: Escherichia coli

text: 1-PAPER-CHL genome


text: NEIKER TECNALIA

text: public

text: Escherichia coli

text: Antibiotic resistant strain 1-PAPER-STR

text: Escherichia coli

text: Escherichia coli

text: 1-PAPER-STR genome


E-MTAB-5284:Sample 1

text: public

text: E-MTAB-5284:Sample 1

tag: Namespace:Department of Biology and Biological Engineering, Chalmers University of Technology

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: Protocols: Samples for RNA analysis were rapidly taken from steady-state chemostats, frozen in liquid nitrogen and stored at −80°C. Chemostat cultures were performed with a dilution rate of 0.05 h-1 at 30 °C in 1.2 L bioreactors (DASGIP) with a working volume of 750 mL at pH 3.5, controlled with 2 M KOH. Dissolved oxygen was kept above 30% with a stirrer rate of 600 rpm and an air flow rate of 1 vvm. For carbon restriction, one liter medium contained 5 g glucose, 5 g (NH4)2SO4, 3 g KH2PO4, 0.5 g MgSO4·7 H2O, vitamins and trace metal solutions (Verduyn et al. 1992) and 125 μL antifoam 204 (Sigma-Aldrich). For nitrogen restriction a similar medium was used, where the glucose was increased to 25 g, the (NH4)2SO4 decreased to 0.5 g while SO4 levels remained constant by adding 5.96 g K2SO4. CO2 and residual O2 in the exhaust gas were measured using an online gas analyser (DASGIP). Total RNA was extracted with Trizol (Invitrogen) using the manufacturer’s instructions with additional mechanical disruption of the cells using a FastPrep homogenizer (MP Biomedicals) and 1 mm silica beads. Samples were depleted of rRNA using RiboZero

text: MATa, leu2-270, ura3-302::URA3, xpr2-332, axp-2 TEFin-LacZ-LEU2

characteristic: genetic modification

text: control strain

characteristic: genotype

text: nitrogen restriction

characteristic: growth condition

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Sample 1


E-MTAB-5284:Sample 2

characteristic: ENA-FIRST-PUBLIC

text: Department of Biology and Biological Engineering, Chalmers University of Technology

text: public

text: E-MTAB-5284:Sample 2

text: ArrayExpress

text: control strain

text: nitrogen restriction

text: Yarrowia lipolytica

characteristic: organism

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Sample 2


E-MTAB-5284:Sample 3

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5284:Sample 3

text: ArrayExpress

text: control strain

text: nitrogen restriction

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Sample 3

characteristic: title


E-MTAB-5284:Sample 4

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5284:Sample 4

text: ArrayExpress

text: control strain

text: carbon restriction

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Sample 4


E-MTAB-5284:Sample 5

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5284:Sample 5

text: ArrayExpress

text: control strain

text: carbon restriction

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Sample 5


E-MTAB-5284:Sample 6

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

text: E-MTAB-5284:Sample 6

text: ArrayExpress

text: control strain

text: carbon restriction

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Yarrowia lipolytica

text: Sample 6


text: public

characteristic: SRA accession

tag: Namespace:Competence Center of Food and Fermentation Technologies

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Beg samples


text: Competence Center of Food and Fermentation Technologies

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Beg samples


E-MTAB-5285:Sample 1

text: public

text: E-MTAB-5285:Sample 1

tag: Namespace:Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: At 2 h (treated and controls), 6 h and 24 h after treatment, cells were harvested by trypsination and washed in PBS. Cell suspensions were divided into aliquots for whole-cell analysis, subcellular fractionation and RNA sequencing. A431 human cells (DSMZ #ACC-91, tested for, and found free of, Mycoplasma contamination) were cultured in Dulbecco's Modified Eagle Medium supplemented with 10% fetal bovine serum, 1% penicillin/streptomycin, non-essential amino acids, and sodium pyruvate, all from Invitrogen. Twenty four hours after seeding, the A431 cell cultures (in triplicates) were treated with gefitinib to induce altered gene/protein expression. Controls were left untreated. Total RNA was prepared from A431 cells (aliquots from the samples run on mass spectrometry) in biological triplicates using RNeasy Mini kit (Qiagen). cDNA libraries were constructed according to a modified Illumina RNA-seq library preparation protocol described in http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0021910

characteristic: description

text: squamous cell carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-5285:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University

text: public

text: E-MTAB-5285:Sample 2

text: ArrayExpress

text: epithelial cell

text: human

text: squamous cell carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 2


E-MTAB-5285:Sample 3

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5285:Sample 3

text: ArrayExpress

text: epithelial cell

text: human

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 3

characteristic: title


E-MTAB-5285:Sample 10

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5285:Sample 10

text: ArrayExpress

text: epithelial cell

text: human

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 10


E-MTAB-5285:Sample 11

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5285:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 11


E-MTAB-5285:Sample 12

text: public

text: E-MTAB-5285:Sample 12

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

text: human

characteristic: common name

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 12


E-MTAB-5285:Sample 4

text: public

text: E-MTAB-5285:Sample 4

text: ArrayExpress

text: epithelial cell

characteristic: cell type

text: human

characteristic: description

text: squamous cell carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 4


E-MTAB-5285:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5285:Sample 5

text: ArrayExpress

text: epithelial cell

text: human

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 5


E-MTAB-5285:Sample 6

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5285:Sample 6

text: ArrayExpress

text: epithelial cell

text: human

text: squamous cell carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 6


E-MTAB-5285:Sample 7

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: E-MTAB-5285:Sample 7

text: ArrayExpress

text: epithelial cell

text: human

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 7

characteristic: title


E-MTAB-5285:Sample 8

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5285:Sample 8

text: ArrayExpress

text: epithelial cell

text: human

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 8


E-MTAB-5285:Sample 9

text: public

text: E-MTAB-5285:Sample 9

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

text: human

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 9


text: Anopheles gambiae

characteristic: ArrayExpress-Species

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae


E.coli APEC

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: E.coli APEC

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: University of Copenhagen

characteristic: collected by

characteristic: collection date

text: we investigated the role of polyamines (putrescine and spermidine) during the in vitro growth of APEC E. coli.

characteristic: description

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: No

characteristic: is the sequenced pathogen host associated?

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: The role of polyamines in growth of avian pathogenic Escherichia coli.


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA (INRA Versailles)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INRA (INRA Versailles)

characteristic: Submitter Id

text: thale cress

text: Col-0 small RNAs sequencing

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Col sRNAs

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: INRA (INRA Versailles)

text: public

text: thale cress

characteristic: common name

text: Nok-1 small RNA sequencing

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: INRA (INRA Versailles)

text: public

text: thale cress

text: Col-0 x Nok-1 hybrid small RNA sequencing

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Teagasc Crops Research Centre

text: public

tag: Namespace:Teagasc Crops Research Centre

text: Venture

characteristic: cultivar

text: drought and waterlogging

text: Phalaris arundinacea

text: Phalaris arundinacea

text: green leaves

characteristic: tissue type

text: Phalaris arundinacea transcriptome under waterstress


text: Teagasc Crops Research Centre

text: public

text: orchard grass

text: Sparta

text: drought and waterlogging

text: Dactylis glomerata

text: Dactylis glomerata

text: green leaves

text: Dactylis glomerata transcriptome undeer water stress


text: RIPCM

text: public

characteristic: collection date

text: human microbiome

characteristic: environment (biome)

text: intestine environment

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Gut metagenomes of the patients with Helicobacter pylori before and after the antibiotic therapy

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Yersiniaceae bacterium 2134

characteristic: organism

text: Yersiniaceae bacterium 2134

characteristic: strain

text: Real-time genomics to decipher atypical bacteria in clinical microbiology. N.pustula 2134 strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: End samples


text: URMITE

text: public

text: Bacteroides sp. Marseille-P3132

text: Bacteroides sp. Marseille-P3132

text: Bacteroides congonensis genome


text: URMITE

text: public

text: Bacteroides sp. Marseille-P3166

text: Bacteroides sp. Marseille-P3166

text: Bacteroides togonis genome


text: URMITE

text: public

text: Actinomyces sp. Marseille-P2818

text: Actinomyces sp. Marseille-P2818

text: Actinomyces marseillensis genome


text: URMITE

text: public

text: Parabacteroides sp. Marseille-P3160

text: Parabacteroides sp. Marseille-P3160

text: Parabacteroides sinusitis genome


Bt

text: Jessy

text: public

text: Bt

text: buff-tailed bumblebee

text: Bombus terrestris

text: Bombus terrestris

text: B.terrestris


Bl

text: Jessy

text: public

text: Bl

text: white-tailed bumblebee

text: Bombus lucorum

text: Bombus lucorum

text: B.lucorum


Bp

text: Jessy

text: public

text: Bp

text: Bombus pascuorum

text: Bombus pascuorum

text: B.pascuorum


Bla

text: Jessy

text: public

text: Bla

text: Bombus lapidarius

text: Bombus lapidarius

text: B.lapidarius


text: School of Veterinary Medicine

text: public

tag: Namespace:School of Veterinary Medicine

characteristic: collection date

text: We report an update to the reference genome sequence of the bovine tuberculosis bacillus Mycobacterium bovis AF2122/97 generated using an integrative multi-‘omics approach. Updates include 42 new coding sequences, 14 modified annotations, 26 single nucleotide polymorphisms and disclosure that the RD900 locus, previously described as absent from the M. bovis AF2122/97 genome, is in fact present.

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

characteristic: isolate

text: This strain is a fully virulent strain that was isolated in 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes. The strain was also reported to infect and persist in badgers that are considered to be a significant source of bovine infection.

characteristic: isolation source

text: Mycobacterium bovis AF2122/97

text: Mycobacterium bovis AF2122/97

text: Updated reference genome sequence and annotation of Mycobacterium bovis AF2122/97


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: ACTGACTGC

characteristic: multiplex identifiers

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

characteristic: sequencing method

text: Bacterial 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: TACGTACGT

text: uncultured bacterium

characteristic: organism

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: CTGTCATAG

characteristic: multiplex identifiers

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

text: CTCAGTGAT

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

characteristic: sequencing method

text: Bacterial 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: CTAGCGTAC

text: uncultured bacterium

characteristic: organism

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

text: CTCTGACAT

characteristic: multiplex identifiers

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: TCTGACAGC

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

characteristic: sequencing method

text: Bacterial 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: TCACGTCTG

text: uncultured bacterium

characteristic: organism

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: ATGATGATG

characteristic: multiplex identifiers

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: CTACTACTA

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

characteristic: sequencing method

text: Bacterial 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: TAGCTAGCT

text: uncultured bacterium

characteristic: organism

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: AGCTAGCTC

characteristic: multiplex identifiers

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CAGTCAGTC

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

characteristic: sequencing method

text: Bacterial 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: ATCGCTAGT

text: uncultured bacterium

characteristic: organism

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CTGTCATAG

characteristic: multiplex identifiers

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: CTCAGTGAT

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

characteristic: sequencing method

text: Bacterial 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: ACACTGTCG

text: uncultured bacterium

characteristic: organism

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

text: VLJ

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: AGATCGCAC

characteristic: multiplex identifiers

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG,GACTACHVGGGTATCTAATCC

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured bacterium

text: Ion Torrent

text: Bacterial 16S rRNA gene


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CTGTGACAG

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

characteristic: sequencing method

text: Archaeal 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: ACATCGACG

text: uncultured archaeon

characteristic: organism

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: TCAGACTAG

characteristic: multiplex identifiers

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

text: CTGACTGTC

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

characteristic: sequencing method

text: Archaeal 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: ATGCGTAGC

text: uncultured archaeon

characteristic: organism

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

text: TGTGCAGAT

characteristic: multiplex identifiers

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: ACACACGCG

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

characteristic: sequencing method

text: Archaeal 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: TGTGACATG

text: uncultured archaeon

characteristic: organism

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CTCTCTCTC

characteristic: multiplex identifiers

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: ACACACACC

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

characteristic: sequencing method

text: Archaeal 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: TCTCTCTCT

text: uncultured archaeon

characteristic: organism

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: CGATCTCTC

characteristic: multiplex identifiers

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: ACGACGATC

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

characteristic: sequencing method

text: Archaeal 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: TGAGTGAGT

text: uncultured archaeon

characteristic: organism

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: TCAGACTAG

characteristic: multiplex identifiers

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: CTGACTGTC

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

characteristic: sequencing method

text: Archaeal 16S rRNA gene

characteristic: target gene

characteristic: target subfragment


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: TGTCAGAGC

text: uncultured archaeon

characteristic: organism

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

text: VLJ

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: CGTCGTAGC

characteristic: multiplex identifiers

text: uncultured archaeon

text: GYGCASCAGKCGMGAAW,GGACTACVSGGGTATCTAAT

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured archaeon

text: Ion Torrent

text: Archaeal 16S rRNA gene


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CGTGAGTAC

text: uncultured fungus

text: AGCTGCGTTCTTCATCGATGC,CTTGGTCATTTAGAGGAAGTA

text: VLJ

text: uncultured fungus

text: Ion Torrent

characteristic: sequencing method

text: ITS region

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: AGTCGTCTG

text: uncultured fungus

characteristic: organism

text: VLJ

text: uncultured fungus

text: Ion Torrent

text: ITS region

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: TCACTCACG

characteristic: multiplex identifiers

text: uncultured fungus

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured fungus

text: Ion Torrent

text: ITS region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

text: CTGTCTGTG

text: uncultured fungus

text: VLJ

text: uncultured fungus

text: Ion Torrent

characteristic: sequencing method

text: ITS region

characteristic: target gene

characteristic: target subfragment


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: AGTGTACGT

text: uncultured fungus

characteristic: organism

text: VLJ

text: uncultured fungus

text: Ion Torrent

text: ITS region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

text: TGTGCTGAG

characteristic: multiplex identifiers

text: uncultured fungus

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured fungus

text: Ion Torrent

text: ITS region


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: carbon steel

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: ACGCACGCG

text: uncultured fungus

text: VLJ

text: uncultured fungus

text: Ion Torrent

characteristic: sequencing method

text: ITS region

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: carbon steel

characteristic: description

text: groundwater

text: anoxic groundwater

text: biofilm

text: Finland

text: mimarks-survey

characteristic: miscellaneous environmental package

text: TCGCTCGCG

text: uncultured fungus

characteristic: organism

text: VLJ

text: uncultured fungus

text: Ion Torrent

text: ITS region

characteristic: title


characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: anoxic groundwater

text: groundwater

characteristic: environment (biome)

text: anoxic groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: CATGCACGT

characteristic: multiplex identifiers

text: uncultured fungus

characteristic: pcr primers

text: VLJ

characteristic: project name

text: uncultured fungus

text: Ion Torrent

text: ITS region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: anoxic groundwater

characteristic: description

text: groundwater

text: anoxic groundwater

text: water

text: Finland

text: mimarks-survey

text: AGAGAGAGC

text: uncultured fungus

text: VLJ

text: uncultured fungus

text: Ion Torrent

characteristic: sequencing method

text: ITS region

characteristic: target gene

characteristic: target subfragment