characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: liver HCC nodule 85037_N1 of spontaneous origin from individual 85037. This sample is a unique specimen from this individual.

text: HCC

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: title

text: not treated

characteristic: treatment agent

text: well

characteristic: tumour grading


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: house mouse

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 92188_N3 from DEN treated individual 92188. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

characteristic: tissue type

text: DEN

characteristic: treatment date

unit: ug/g body weight

characteristic: treatment dose

text: low


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: liver dysplastic nodule 85037_N6_slice1 of spontaneous origin from individual 85037. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: title

text: not treated

characteristic: treatment agent

text: high

characteristic: tumour grading


text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: liver HCC nodule 87574_C3 from DEN treated individual 87574. This sample is a unique specimen from this individual.

characteristic: description

text: HCC

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: DEN

text: moderate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

text: liver HCC nodule 92189_N4 from DEN treated individual 92189. This sample is a unique specimen from this individual.

text: HCC

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

characteristic: tissue type

text: DEN

characteristic: treatment date

characteristic: treatment dose

text: well


text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: liver HCC nodule 87574_C5-slice_1 from DEN treated individual 87574. This sample is a unique specimen from this individual.

text: HCC

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: title

text: DEN

characteristic: treatment agent

text: well

characteristic: tumour grading


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: tail sample 92757_tail from individual 92757. This sample is a unique specimen from this individual.

characteristic: description

characteristic: individual name

text: Mus musculus

text: Mus musculus

text: male

text: tail

text: not treated


text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: tail sample 85037_tail from individual 85037. This sample is a unique specimen from this individual.

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: tail

characteristic: tissue type

text: not treated


text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: ear sample 15/22738 from individual 15/22738. This sample is a unique specimen from this individual.

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: ear

characteristic: title

text: not treated

characteristic: treatment agent


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: house mouse

characteristic: common name

characteristic: date of birth

text: liver unclassified nodule 81152E from DEN treated individual 81152. This sample is a unique specimen from this individual.

text: unclassified

characteristic: diagnosis

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose


text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

characteristic: date of death

text: liver dysplastic nodule 85037_N5_slice1 of spontaneous origin from individual 85037. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: not treated

text: high

characteristic: tumour grading


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: liver dysplastic nodule 87919_N1 of spontaneous origin from individual 87919. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: tissue type

characteristic: title

text: not treated

characteristic: treatment agent

text: high


characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: liver HCC nodule 87104_C1-slice_1 from DEN treated individual 87104. This sample is a unique specimen from this individual.

text: HCC

characteristic: diagnosis

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose

text: moderate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: INSDC status

text: house mouse

text: liver HCC nodule 87922_N3_quadrant of spontaneous origin from individual 87922. This sample is a unique specimen from this individual.

characteristic: description

text: HCC

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: not treated

text: moderate

characteristic: tumour grading


characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: ear sample 15/22741 from individual 15/22741. This sample is a unique specimen from this individual.

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: ear

characteristic: tissue type

characteristic: title

text: not treated

characteristic: treatment agent


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: INSDC status

text: house mouse

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 87920_N1 of spontaneous origin from individual 87920. This sample is a unique specimen from this individual.

text: dysplastic nodule

characteristic: diagnosis

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: not treated

text: high


characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

text: house mouse

text: ear sample 15/22293 from individual 15/22293. This sample is a unique specimen from this individual.

characteristic: description

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: ear

text: not treated


text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: ear sample 15/22292 from individual 15/22292. This sample is a unique specimen from this individual.

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: ear

characteristic: tissue type

characteristic: title

text: not treated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

characteristic: INSDC status

text: house mouse

characteristic: common name

characteristic: date of birth

text: liver HCC nodule 87187_C5 from DEN treated individual 87187. This sample is a unique specimen from this individual.

text: HCC

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose

text: poor

characteristic: tumour grading


characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

characteristic: date of death

text: liver dysplastic nodule 91099_N1 from DEN treated individual 91099. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: DEN

text: high


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: liver HCC nodule 90997_C7 from DEN treated individual 90997. This sample is a unique specimen from this individual.

text: HCC

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: tissue type

characteristic: title

text: DEN

text: well


characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 90022_N2 from DEN treated individual 90022. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: DEN

characteristic: treatment agent

characteristic: treatment date

characteristic: treatment dose

text: high

characteristic: tumour grading


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

text: house mouse

text: liver dysplastic nodule 87920_N4 of spontaneous origin from individual 87920. This sample is a unique specimen from this individual.

characteristic: description

text: dysplastic nodule

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: not treated

text: high


characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: liver dysplastic nodule 93258_N4 from DEN treated individual 93258. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain

text: liver

characteristic: tissue type

characteristic: title

text: DEN

text: high


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC last update

text: public

text: house mouse

characteristic: date of birth

characteristic: date of death

text: liver dysplastic nodule 92759_N1 of spontaneous origin from individual 92759. This sample is a unique specimen from this individual.

text: dysplastic nodule

text: Mus musculus

text: Mus musculus

text: male

text: liver

text: not treated

characteristic: treatment agent

text: high

characteristic: tumour grading


characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

text: public

text: house mouse

text: liver HCC nodule 90796_N1 from DEN treated individual 90796. This sample is a unique specimen from this individual.

characteristic: description

text: HCC

characteristic: diagnosis

characteristic: individual name

text: Mus musculus

characteristic: organism

characteristic: sample name

text: Mus musculus

text: male

characteristic: sex

text: liver

text: DEN

characteristic: treatment date

characteristic: treatment dose

text: well


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: URMITE

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Mycobacterium numidiamassiliense was isolated from rhizosphere of tomato plants in Marseille

text: Mycobacterium sp. AB215

text: Mycobacterium sp. AB215

characteristic: strain

text: Mycobacterium numidiamassiliense genome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Jiaxing University

characteristic: INSDC center name

characteristic: INSDC last update

text: public

tag: Namespace:Jiaxing University

characteristic: collection date

text: host is healthy farmed silver fox or raccoon dog

characteristic: environment (biome)

text: fecal microbiota

characteristic: environment (feature)

text: fresh feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: feces metagenome

text: V4 regin of Bacterial 16S rDNA

characteristic: project name

text: feces metagenome

text: MiSeq

characteristic: sequencing method

text: fecal microbiota

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:European Research Institute for the Biology of Ageing, University of Groningen, UMC Groningen, The Netherlands

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Primary foreskin fibroblasts

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Human foreskin fibroblasts HCA2 were obtained from O. Pereira-Smith (University of Texas Health Science Center, San Antonio); human foreskin fibroblasts BJ were purchased from ATCC (Cat: CRL-2522); MEFs were produced from 13.5 day embryos as previously described (Demaria 2010); mouse primary skin microvascular endothelial cells were purchased from Cellbiologics (Cat: C57-6064). All cells were cultured in 5% oxygen for at least 4 doublings prior to use. Fibroblasts were cultured in DMEM (Thermo Fisher Scientific) enriched with 10% fetal bovine serum (FBS, GE Healthcare Life Sciences) and 1% penicillin/streptomycin (Lonza). Endothelial cells were grown in an endothelial cell growth media (ATCC). Cells were prepared for RNA extraction via an RNAeasy mini kit (Invitrogen). Samples were treated with Qiasol lysis buffer and extracted for total RNA on a Qiacube robot per the manufacturer’s instructions (Invitrogen). The extracted RNA was quantitated using a NanoDrop and RNA quality was measured via BioAnalyzer chip (Agilent). Purified RNA samples were then sent to the University of Minnesota BioMedical Genomics Center for Illumina HiSeq RNA sequencing, where RNA-Seq library preparation was carried out according to the manufactuers protocols (Illumina).

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European Research Institute for the Biology of Ageing, University of Groningen, UMC Groningen, The Netherlands

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Primary foreskin fibroblasts

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: public

text: ArrayExpress

text: Primary epidermal keratinocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

text: ArrayExpress

text: Primary epidermal melanocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: UTRECHT UNIVERSITY

text: public

tag: Namespace:UTRECHT UNIVERSITY

characteristic: collection date

text: Acinetobacter baumannii

text: isolate 212092102901 originating from caICU outbreak 2012

text: Netherlands

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: canis familiaris

characteristic: host scientific name

characteristic: isolate

text: urine

characteristic: isolation source

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UTRECHT UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Acinetobacter baumannii

text: isolate 212062205001 originating from caICU outbreak 2012

text: Netherlands

text: diseased

text: canis familiaris

text: airway

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-LAST-UPDATE

text: UTRECHT UNIVERSITY

text: public

text: Acinetobacter baumannii

characteristic: common name

text: isolate 212082004201 originating from caICU outbreak 2012

characteristic: description

text: Netherlands

text: diseased

text: canis familiaris

text: urine

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii


characteristic: External Id

text: UTRECHT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Acinetobacter baumannii

text: isolate 212090506901 originating from caICU outbreak 2012

text: Netherlands

text: diseased

text: canis familiaris

text: wound

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: title


text: UTRECHT UNIVERSITY

text: public

characteristic: collection date

text: Acinetobacter baumannii

text: isolate 214030705701 originating from caICU outbreak 2014

text: Netherlands

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: canis familiaris

characteristic: host scientific name

text: wound

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UTRECHT UNIVERSITY

text: public

text: Acinetobacter baumannii

text: isolate 214031705301 originating from caICU outbreak 2014

text: Netherlands

text: diseased

text: canis familiaris

characteristic: isolate

text: wound

characteristic: isolation source

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: UTRECHT UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Acinetobacter baumannii

text: isolate 214032504901 originating from caICU outbreak 2014

text: Netherlands

text: diseased

text: canis familiaris

text: surface

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-LAST-UPDATE

text: UTRECHT UNIVERSITY

text: public

text: Acinetobacter baumannii

characteristic: common name

text: isolate 214032504501 originating from caICU outbreak 2014

characteristic: description

text: Netherlands

text: diseased

text: canis familiaris

text: surface

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii


characteristic: External Id

text: UTRECHT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Acinetobacter baumannii

text: isolate UKG-Inl-T1-1N-1 originating from operation table clinic, 2014

text: Netherlands

text: healthy

text: canis familiaris

text: surface

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: title


text: UTRECHT UNIVERSITY

text: public

characteristic: collection date

text: Acinetobacter baumannii

text: isolate UKG-Inl-T1-4N-2 originating from prep room, horizontal surface, 2014

text: Netherlands

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: canis familiaris

characteristic: host scientific name

text: surface

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UTRECHT UNIVERSITY

text: public

text: Acinetobacter baumannii

text: isolate MCD-Ch-OK3-2PV-1 originating from skin of dog, clinic, 2014

text: Netherlands

text: healthy

text: canis familiaris

characteristic: isolate

text: skin

characteristic: isolation source

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: UTRECHT UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Acinetobacter baumannii

text: isolate RUH875, EC-I reference isolate

text: Netherlands

text: diseased

text: homo sapiens

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-LAST-UPDATE

text: UTRECHT UNIVERSITY

text: public

text: Acinetobacter baumannii

characteristic: common name

text: isolate RUH134, EC-II reference isolate

characteristic: description

text: Netherlands

text: diseased

text: homo sapiens

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii


characteristic: External Id

text: UTRECHT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Acinetobacter baumannii

text: isolate LUH5875, EC-III reference isolate

text: Netherlands

text: diseased

text: homo sapiens

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: title


text: URMITE

text: public

text: Mycobacterium rhizamassiliense was isolated from rhizosphere of tomato plants in Marseille

text: Mycobacterium sp. AB57

text: Mycobacterium sp. AB57

characteristic: strain

text: Mycobacterium rhizamassiliense genome


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium VIB Center for Plant Systems Biology,VIB, Gent, Belgium

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Protocols: Plants for leaf growth monitoring were grown under growth chamber conditions with controlled relative humidity (55%), temperature (24°C day/18°C night), and light intensity (170 mmol per m2 per second photosynthetic active radiation at plant level) provided by a combination of high-pressure sodium vapor (RNP-T/LR/400W/S/230/E40; Radium) and metal halide lamps with quartz burners (HRI-BT/400W/D230/E40; Radium) in a 16h/8h (day/night) cycle. Total RNA was isolated with the guanidinium thiocyanate-phenol-chloroform extraction method using TRI-reagent (Sigma-Aldrich) Library preparation was done using the TruSeq RNA Sample Preparation Kit v2 (Illumina). In brief, poly(A)-containing mRNA molecules were reverse transcribed, double-stranded cDNA was generated and adapters were ligated. After quality control using a 2100 Bioanalyzer (Agilent), clusters were generated through amplification using the TruSeq PE Cluster Kit v3-cBot-HS kit (Illumina), followed by sequencing on an Illumina HiSeq2000 with the TruSeq SBS Kit v3-HS (Illumina).

characteristic: genotype

text: Zea mays

text: Zea mays

text: basal half cm of growing leaf 4

characteristic: organism part

text: Zea mays


characteristic: ENA-FIRST-PUBLIC

text: Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium VIB Center for Plant Systems Biology,VIB, Gent, Belgium

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: Zea mays

text: Zea mays

text: basal half cm of growing leaf 4

text: Zea mays


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Zea mays

text: Zea mays

text: basal half cm of growing leaf 4

text: Zea mays


text: NICD-NHLS

text: public

characteristic: description

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis


characteristic: External Id

text: Functional Genomics Genter Zurich

characteristic: INSDC center name

text: public

tag: Namespace:Functional Genomics Genter Zurich

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: hospital patient

characteristic: isolation source

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


A

characteristic: ENA-CHECKLIST

text: Functional Genomics Genter Zurich

characteristic: INSDC last update

text: public

text: A

text: Switzerland

text: environment

text: A

text: contaminated wipes

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak

characteristic: title


B

characteristic: ENA-FIRST-PUBLIC

text: Functional Genomics Genter Zurich

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: B

text: Switzerland

text: environment

text: B

text: contaminated wipes

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


C

characteristic: ENA-LAST-UPDATE

text: Functional Genomics Genter Zurich

text: public

characteristic: SRA accession

text: C

characteristic: Submitter Id

text: Switzerland

text: environment

text: C

text: contaminated wipes

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


D

characteristic: External Id

text: Functional Genomics Genter Zurich

text: public

text: D

text: Switzerland

text: environment

text: D

text: contaminated wipes

text: Burkholderia stabilis

characteristic: organism

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


E

text: Functional Genomics Genter Zurich

characteristic: INSDC center name

text: public

text: E

characteristic: collection date

text: Switzerland

text: environment

text: E

text: contaminated wipes

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


F

text: Functional Genomics Genter Zurich

text: public

text: F

text: Switzerland

characteristic: geographic location (country and/or sea)

text: environment

text: F

text: contaminated wipes

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


L

text: Functional Genomics Genter Zurich

text: public

text: L

text: Switzerland

text: environment

characteristic: host scientific name

text: L

text: contaminated wipes

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


M

text: Functional Genomics Genter Zurich

text: public

text: M

text: Switzerland

text: environment

text: M

characteristic: isolate

text: contaminated wipes

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


N

text: Functional Genomics Genter Zurich

text: public

text: N

text: Switzerland

text: environment

text: N

text: contaminated wipes

characteristic: isolation source

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


O

characteristic: ENA-CHECKLIST

text: Functional Genomics Genter Zurich

text: public

text: O

text: Switzerland

text: environment

text: O

text: contaminated wipes

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


P

text: Functional Genomics Genter Zurich

characteristic: INSDC last update

text: public

text: P

text: Switzerland

text: environment

text: P

text: contaminated wipes

text: Burkholderia stabilis

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


text: Functional Genomics Genter Zurich

text: public

text: Switzerland

text: diseased

characteristic: host health state

text: homo sapiens

text: patient

text: Burkholderia contaminans

text: Burkholderia contaminans

text: NGS of Burkholderia stabilise outbreak: outgroup

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Functional Genomics Genter Zurich

characteristic: INSDC first public

text: public

text: Switzerland

text: diseased

text: homo sapiens

text: patient

text: Burkholderia cepacia

text: Burkholderia cepacia


characteristic: ENA-LAST-UPDATE

text: Functional Genomics Genter Zurich

text: public

characteristic: INSDC status

text: Switzerland

text: diseased

text: homo sapiens

text: patient

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia


text: Functional Genomics Genter Zurich

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Switzerland

text: diseased

text: homo sapiens

text: patient

text: Burkholderia multivorans

text: Burkholderia multivorans


K

characteristic: External Id

text: Functional Genomics Genter Zurich

text: public

text: K

text: Switzerland

text: environment

text: K

text: contaminated wipes

text: Burkholderia stabilis

characteristic: organism

text: Burkholderia stabilis

text: NGS of Burkholderia stabilis outbreak


text: URMITE

characteristic: INSDC center name

text: public

text: Mycobacterium terramassiliense was isolated from rhizosphere of tomato plants in Marseille

characteristic: description

text: Mycobacterium sp. AB308

text: Mycobacterium sp. AB308

characteristic: strain

text: Mycobacterium terramassiliense genome


text: CSISP

text: public

text: 23 ; Year

characteristic: age

characteristic: altitude

text: human-associated habitat

characteristic: biome

text: Supragingival dental plaque

characteristic: body product

text: Teeth surfaces

characteristic: body site

text: MGRAST

characteristic: broker name

characteristic: collection date

characteristic: collection time

text: UTC

text: europe

characteristic: continent

text: Spain

characteristic: country

characteristic: depth

text: mgs25820 Taxonomy ID:447426

text: Healthy, CAO's Index = 0

characteristic: elevation

text: human-oral

characteristic: env package

text: human-associated habitat

characteristic: feature

characteristic: host subject id

characteristic: latitude

text: Valencia

characteristic: location

characteristic: longitude

text: human-associated habitat

characteristic: material

characteristic: mgrast id

text: geodetic_system: wgs_84

text: Teeth

text: human oral metagenome

text: total DNA extraction - enzymes

characteristic: samp mat process

characteristic: sample name

text: human-associated habitat

text: human oral metagenome

text: Male

characteristic: sex

characteristic: temperature

text: 24 hours

text: mgs25820 Taxonomy ID:447426


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 49 ; Year

characteristic: age

characteristic: altitude

text: human-associated habitat

characteristic: biome

text: Supragingival dental plaque

characteristic: body product

text: Teeth surfaces

characteristic: body site

text: MGRAST

characteristic: broker name

characteristic: collection date

characteristic: collection time

text: UTC

text: europe

text: Spain

text: mgs25822 Taxonomy ID:447426

characteristic: description

text: Diseased, CAO's index = 11

text: human-oral

text: human-associated habitat

text: Valencia

text: human-associated habitat

text: geodetic_system: wgs_84

text: Teeth

text: human oral metagenome

characteristic: organism

text: total DNA extraction - enzymes

text: human-associated habitat

text: human oral metagenome

text: Male

text: 24 hours

text: mgs25822 Taxonomy ID:447426

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSISP

characteristic: INSDC center name

text: public

text: 36 ; Year

text: human-associated habitat

text: Supragingival dental plaque

text: Teeth surfaces

text: MGRAST

text: UTC

text: europe

characteristic: continent

text: Spain

characteristic: country

characteristic: depth

text: mgs25823 Taxonomy ID:447426

text: Diseased, CAO's index = 25

characteristic: elevation

text: human-oral

characteristic: env package

text: human-associated habitat

characteristic: feature

characteristic: host subject id

characteristic: latitude

text: Valencia

characteristic: location

characteristic: longitude

text: human-associated habitat

characteristic: material

characteristic: mgrast id

text: geodetic_system: wgs_84

text: Teeth

text: human oral metagenome

text: total DNA extraction - enzymes

characteristic: samp mat process

characteristic: sample name

text: human-associated habitat

text: human oral metagenome

text: Female

characteristic: sex

characteristic: temperature

text: 24 hours

text: mgs25823 Taxonomy ID:447426


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 42 ; Year

characteristic: age

characteristic: altitude

text: human-associated habitat

characteristic: biome

text: Supragingival dental plaque from inside the cavity

characteristic: body product

text: Cavity on tooth 4.6

characteristic: body site

text: MGRAST

characteristic: broker name

characteristic: collection date

characteristic: collection time

text: UTC

text: europe

text: Spain

text: mgs25824 Taxonomy ID:447426

characteristic: description

text: Diseased, CAO's index = 10

text: human-oral

text: human-associated habitat

text: Valencia

text: human-associated habitat

text: geodetic_system: wgs_84

text: Teeth

text: human oral metagenome

characteristic: organism

text: total DNA extraction - enzymes

text: human-associated habitat

text: human oral metagenome

text: Male

text: 24 hours

text: mgs25824 Taxonomy ID:447426

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSISP

characteristic: INSDC center name

text: public

text: 49 ; Year

text: human-associated habitat

text: Cavity on tooth 1.6

text: MGRAST

text: UTC

text: europe

characteristic: continent

text: Spain

characteristic: country

characteristic: depth

text: mgs25825 Taxonomy ID:447426

text: Diseased, CAO's index = 11

characteristic: elevation

text: human-oral

characteristic: env package

text: human-associated habitat

characteristic: feature

characteristic: host subject id

characteristic: latitude

text: Valencia

characteristic: location

characteristic: longitude

text: human-associated habitat

characteristic: material

characteristic: mgrast id

text: geodetic_system: wgs_84

text: Teeth

text: human oral metagenome

text: total DNA extraction - enzymes

characteristic: samp mat process

characteristic: sample name

text: human-associated habitat

text: human oral metagenome

text: Male

characteristic: sex

characteristic: temperature

text: 24 hours

text: mgs25825 Taxonomy ID:447426


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 29 ; Year

characteristic: age

characteristic: altitude

text: human-associated habitat

characteristic: biome

text: Supragingival dental plaque

characteristic: body product

text: Teeth surfaces

characteristic: body site

text: MGRAST

characteristic: broker name

characteristic: collection date

characteristic: collection time

text: UTC

text: europe

text: Spain

text: mgs25826 Taxonomy ID:447426

characteristic: description

text: Diseased, CAO's index = 6

text: human-oral

text: human-associated habitat

text: Valencia

text: human-associated habitat

text: geodetic_system: wgs_84

text: Teeth

text: human oral metagenome

characteristic: organism

text: total DNA extraction - enzymes

text: human-associated habitat

text: human oral metagenome

text: Male

text: 24 hours

text: mgs25826 Taxonomy ID:447426

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSISP

characteristic: INSDC center name

text: public

text: 36 ; Year

text: human-associated habitat

text: Supragingival dental plaque

text: Teeth surfaces

text: MGRAST

text: UTC

text: europe

characteristic: continent

text: Spain

characteristic: country

characteristic: depth

text: mgs25827 Taxonomy ID:447426

text: Diseased, CAO's index = 8

characteristic: elevation

text: human-oral

characteristic: env package

text: human-associated habitat

characteristic: feature

characteristic: host subject id

characteristic: latitude

text: Valencia

characteristic: location

characteristic: longitude

text: human-associated habitat

characteristic: material

characteristic: mgrast id

text: geodetic_system: wgs_84

text: Teeth

text: human oral metagenome

text: total DNA extraction - enzymes

characteristic: samp mat process

characteristic: sample name

text: human-associated habitat

text: human oral metagenome

text: Male

characteristic: sex

characteristic: temperature

text: 24 hours

text: mgs25827 Taxonomy ID:447426


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 39 ; Year

characteristic: age

characteristic: altitude

text: human-associated habitat

characteristic: biome

text: Supragingival dental plaque

characteristic: body product

text: Teeth surfaces

characteristic: body site

text: MGRAST

characteristic: broker name

characteristic: collection date

characteristic: collection time

text: UTC

text: europe

text: Spain

text: mgs25828 Taxonomy ID:447426

characteristic: description

text: Healthy, CAO's Index = 0

text: human-oral

text: human-associated habitat

text: Valencia

text: human-associated habitat

text: geodetic_system: wgs_84

text: Teeth

text: human oral metagenome

characteristic: organism

text: total DNA extraction - enzymes

text: human-associated habitat

text: human oral metagenome

text: Male

text: 24 hours

text: mgs25828 Taxonomy ID:447426

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Agroscope Institute for Sustainability Sciences

text: These files contain paired-end sequencing information for 9 root samples and 3 soil samples from the climate chamber growth experiments, as well as 9 root samples and 9 soil samples from the natural site growth experiments. 3 experimental soil samples are also included. In the analysis script of the supplementary information, these files are named : Undetermined_S0_L001_R1_001.fastq.gz & Undetermined_S0_L001_R2_001.fastq.gz

text: terrestial biome

characteristic: environment (biome)

text: plant-associated habitat

characteristic: environment (feature)

text: roots/substate/input community

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Trifolium pratense

text: plant-associated

characteristic: plant-associated environmental package

text: Trifolium root microbiome

characteristic: project name

text: Trifolium pratense

text: Illumina Miseq

characteristic: sequencing method

text: Trifolium root/soil growth experiment samples


text: Agroscope Institute for Sustainability Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: These files contain paired-end sequencing information for 8 root samples, 3 growth substrate samples, and 3 soil extract input community samples from the soil extract microcosm experiment. 12 root samples and 3 input community samples from the simplified bacteria community experiment are also included. In the analysis script of the supplementary information, these files are named : s1-amplicon_S1_L001_R1_001.fastq.gz & s1-amplicon_S1_L001_R2_001.fastq.gz

characteristic: description

text: terrestial biome

text: plant-associated habitat

text: roots/substate/input community

text: Switzerland

text: mimarks-survey

text: Trifolium pratense

characteristic: organism

text: plant-associated

text: Trifolium root microbiome

text: Trifolium pratense

text: Illumina Miseq

text: Microcosm root/substrate/input community samples


text: CRISPR mediated gene targeting vector

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: CRISPR mediated gene targeting vector

characteristic: common name

text: CRISPR-mediated gene targeting vector p(U6a-BsaI-gRNA)

characteristic: title


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Rothamsted Research

text: public

tag: Namespace:Rothamsted Research

text: ArrayExpress

characteristic: broker name

text: stiff brome

text: Protocols: Immature Brachypodium embryos were removed from sterilised seeds by dissection, and were transferred to callus induction media (CIM; 4.43 g/l LS salts (Duchefa Biochemie), 30 g/l sucrose (Fisher Scientific), 0.6 mg/l CuSO4, 2.5 mg/ml 2,4-D, 0.2% (w/v) PhytagelTM, pH 5.8). The embryos were incubated at 28 °C in the dark to generate callus, which was subcultured every 2-3 weeks to generate a sufficient quantity. Brachypodium calli were transferred onto plates of CIM containing 50 μM meJA, or a mock control solution. Samples were taken at 24 h, 48 h, 4 d and 8 d. Four biological replicates were harvested per treatment at each timepoint. Each biological replicate consisted of three plates (each containing 36 calli) that were pooled. Around 10-50 mg fresh tissue was suspended in 1 ml TRI Reagent® and then centrifuged (12,000 g, 4 °C, 10 min). The supernatant was added to 200 μl chloroform, and incubated at room temperature for 2-3 min. The samples were centrifuged (10,000 g, 4 °C, 15 min). To the upper phase, ½ volume of isopropanol, and an equal volume of 0.8 M aqueous sodium citrate, 1.2 M aqueous NaCl was added. The samples were incubated at room temperature for 10 min, and centrifuged (10,000 g, 4 °C, 10 min). The pelleted RNA was washed with 1 ml 75% (v/v) aqueous ethanol (vortexed, centrifuged 10,000 g, 4 °C, 10 min), and evaporated to dryness under vacuum. RNA was resuspended in nuclease free water. RNA concentration was determined on a NanoDrop 1000 Spectrophotometer (Thermo Scientific). RNA-seq libraries were constructed the Ion Total RNA-Seq Kit v2 (ThermoFisher Scientific) according to the supplied protocol.

text: callus induction media

characteristic: growth condition

text: Brachypodium distachyon

text: Brachypodium distachyon

text: callus

characteristic: organism part

text: Brachypodium distachyon


text: UT SOUTHWESTERN MEDICAL CENTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UT SOUTHWESTERN MEDICAL CENTER

text: house mouse

text: Mus musculus

text: Mus musculus

text: Precision editing of the gut microbiota to ameliorate colitis


RS

text: Chinese Academy of Fishery Sciences

text: public

characteristic: SRA accession

text: RS

tag: Namespace:Chinese Academy of Fishery Sciences

characteristic: Submitter Id

text: common carp

text: Koi red skin transcriptome

text: Cyprinus carpio

text: Cyprinus carpio

text: Koi red skin transcriptome


WS

text: Chinese Academy of Fishery Sciences

text: public

text: WS

text: common carp

text: Koi white skin transcriptome

characteristic: description

text: Cyprinus carpio

characteristic: organism

text: Cyprinus carpio

text: Koi white skin transcriptome


characteristic: ENA-CHECKLIST

text: Chinese Academy of Fishery Sciences

text: public

text: common carp

text: Koi red scale transcriptome

text: Cyprinus carpio

text: Cyprinus carpio

text: Koi red scale transcriptome


characteristic: ENA-FIRST-PUBLIC

text: Chinese Academy of Fishery Sciences

text: public

text: common carp

text: Koi white scale transcriptome

text: Cyprinus carpio

text: Cyprinus carpio

text: Koi white scale transcriptome


characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF SCIENCES

text: public

tag: Namespace:CHINESE ACADEMY OF SCIENCES

characteristic: collection date

text: BSM-Pepper Fusarium wilt-Bacterial community

text: Seed meal treatment

characteristic: environment (biome)

text: Pre-planting inocubated soil and Post-planting rhizosphere soil

characteristic: environment (feature)

text: Pre-planting and Post-planting

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: 16S rRNA

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University Hospital Galway

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Mbandaka

characteristic: organism

text: Mbandaka

characteristic: serovar

text: Subsp. I

characteristic: sub species

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Braenderup

text: Braenderup

text: Subsp. I


text: Influenzavirus B

characteristic: ArrayExpress-Species

text: SC

text: public

text: Influenzavirus B

characteristic: common name

text: Influenza B virus (B/Kazakhstan/2078/2011)

characteristic: organism

text: Influenza PCR product

characteristic: sample description

text: 1_FluB NIMR


text: Influenzavirus B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Influenzavirus B

text: Influenza B virus (B/reassortant/NYMC BX-42(Lee/1940 x Panama/45/1990))

text: Influenza PCR product

text: 2_FluB NIMR

characteristic: title


text: Influenzavirus B

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Influenzavirus B

text: Influenza PCR product

text: 3_FluB NIMR


text: Influenzavirus B

characteristic: External Id

text: SC

text: public

text: Influenzavirus B

text: Influenza B virus (B/Murmansk/2/2010)

text: Influenza PCR product

text: Influenza B virus (B/Murmansk/2/2010)

text: 4_FluB NIMR


text: Influenzavirus B

text: SC

characteristic: INSDC center name

text: public

text: Influenzavirus B

text: Influenza B virus (B/StPetersburg/93/2011)

text: Influenza PCR product

text: 5_FluB NIMR


text: Influenzavirus B

text: SC

characteristic: INSDC first public

text: public

text: Influenzavirus B

text: Influenza B virus (B/Bulgaria/35/2011)

text: Influenza PCR product

text: Influenza B virus (B/Bulgaria/35/2011)

text: 6_FluB NIMR


text: Influenzavirus B

text: SC

characteristic: INSDC last update

text: public

text: Influenzavirus B

text: Influenza B virus (B/Bangladesh/3333/2007)

text: Influenza PCR product

text: 7_FluB NIMR


text: Influenzavirus B

text: SC

text: public

characteristic: INSDC status

text: Influenzavirus B

text: Influenza PCR product

text: 8_FluB NIMR


text: Influenzavirus B

text: SC

text: public

characteristic: SRA accession

text: Influenzavirus B

text: Influenza B virus (B/England/145/2008)

text: Influenza PCR product

text: Influenza B virus (B/England/145/2008)

text: 9_FluB NIMR


text: Influenzavirus B

text: SC

text: public

characteristic: Submitter Id

text: Influenzavirus B

text: Influenza B virus (B/England/393/2007)

text: Influenza PCR product

text: Influenza B virus (B/England/393/2007)

text: 10_FluB NIMR


text: unidentified influenza virus

text: SC

text: public

text: unidentified influenza virus

text: unidentified influenza virus

text: unidentified influenza virus


text: Lausanne University Hospital

text: public

tag: Namespace:Lausanne University Hospital

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: Clinical

characteristic: isolation source

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Lausanne University Hospital

text: public

text: Acinetobacter baumannii

characteristic: description

text: Switzerland

text: not provided

text: Human

characteristic: isolate

text: Clinical

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Technische Universitat Munchen - WZW

text: public

tag: Namespace:Technische Universitat Munchen - WZW

text: Species of Armillaria are amongst the most common fungi in forest soils and the majority of them are necrotrophic pathogens. There are species considered primary pathogens while others are opportunistic or mostly saprotrophic. They spread in the soil by rizomorphs, shoestring-like unique organs, involved in their migratory and exploratory activities. As saprotrophs, Armillaria spp. are white rot species, which can efficiently decompose all components of plant cell walls, including lignin, cellulose, hemicellulose and pectin.

text: Armillaria ostoyae

text: Armillaria ostoyae

characteristic: strain

text: Armillaria comparative genome project

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Technische Universitat Munchen - WZW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Armillaria cepistipes

text: Armillaria cepistipes

text: Armillaria comparative genome project


text: UNIVERSITY OF ABERDEEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF ABERDEEN

characteristic: Submitter Id

text: Campylobacter jejuni

text: Campylobacter jejuni

text: iCaMPS-4 study chicken isolate


text: UNIVERSITY OF ABERDEEN

text: public

text: Campylobacter coli

text: Campylobacter coli

text: iCaMPS-4 study chicken isolate


text: Plasmodium berghei

characteristic: ArrayExpress-Species

text: SC

text: public

text: Plasmodium berghei

characteristic: common name

text: Plasmodium berghei

text: Day 4 blood_Sulfadiazine M1_F1F4

characteristic: sample description

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Chloroquine M1_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Chloroquine M2_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Chloroquine M3_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Pyr M1_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Pyr M2_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Pyr M3_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Art M3_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Sulfadiazine M1_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Chloroquine M1_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Chloroquine M2_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Chloroquine M3_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Pyr M1_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Pyr M2_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Pyr M3_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: Day 4 blood_Art M3_R2TR1T

text: Plasmodium berghei


Rhodococcus ruber genome

text: CNRS

text: public

text: Rhodococcus ruber genome

text: Rhodococcus ruber

text: Rhodococcus ruber

text: Rhodococcus ruber genome


text: UNIVERSITY OF ABERDEEN

text: public

text: Campylobacter coli

text: Campylobacter coli

text: iCaMPS-4 study chicken isolate


text: UNIVERSITY OF ABERDEEN

text: public

text: Campylobacter jejuni

text: Campylobacter jejuni

text: iCaMPS-4 study chicken isolate


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: UNIVERSITY OF ABERDEEN

text: public

text: Campylobacter jejuni

text: Campylobacter jejuni

text: iCaMPS-4 study clinical/human isolate


text: UNIVERSITY OF ABERDEEN

text: public

text: Campylobacter coli

text: Campylobacter coli

text: iCaMPS-4 study clinical/human isolate


Rhodococcus ruber transcriptome

text: CNRS

text: public

text: Rhodococcus ruber transcriptome

text: Rhodococcus ruber

text: Rhodococcus ruber

text: Rhodococcus ruber transcriptome


HBV genotype D sample M111a

text: public

text: HBV genotype D sample M111a

tag: Namespace:N.F.Gamaleya Research Institute of Epidemiology and Microbiology

characteristic: collection date

text: Russia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiense

characteristic: host scientific name

characteristic: isolate

text: human

characteristic: isolation source

text: HBV genotype D

text: HBV genotype D

text: HBV genotype D sample M111a


HBV genotype D sample M283

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: N.F.Gamaleya Research Institute of Epidemiology and Microbiology

text: public

text: HBV genotype D sample M283

text: Russia

text: diseased

text: Homo sapiens

text: human

text: HBV genotype D

characteristic: organism

text: HBV genotype D

text: HBV genotype D sample M283

characteristic: title


HBV genotype D sample M20431

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: HBV genotype D sample M20431

text: Russia

text: diseased

text: Homo sapiens

text: human

text: HBV genotype D

text: HBV genotype D

text: HBV genotype D sample M2043


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #7 Transfection_F1F4

characteristic: sample description

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #8 Transfection_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 Transfection_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #7 feed_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #8 feed_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 feed_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #7 input sporozoites_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #8 input sporozoites_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 input sporozoites_F1F4

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #7 after infection 37 wells

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #8 after infection 37 wells

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 after infection 10 wells

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 after infection 20 wells

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 after infection 37 wells

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #7 Transfection_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #8 Transfection_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 Transfection_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #7 feed_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #8 feed_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 feed_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #7 input sporozoites_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #8 input sporozoites_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 input sporozoites_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #7 after infection 37 wells_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #8 after infection 37 wells_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 after infection 10 wells_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 after infection 20 wells_R2TR1T

text: Plasmodium berghei


text: Plasmodium berghei

text: SC

text: public

text: Plasmodium berghei

text: Plasmodium berghei

text: #9 after infection 37 wells_R2TR1T

text: Plasmodium berghei


text: CBSFAX

text: public

text: Bacillus halodurans

text: Bacillus halodurans

text: draft genome of Bacillus halodurans strain US193


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

characteristic: isolation source

characteristic: organism

text: Enteritidis

text: Subsp. I

characteristic: title


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ireland

text: Homo sapiens

text: Human

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Kentucky

text: Kentucky

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Panama

text: Panama

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Mbandaka

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Paratyphi A

text: Paratyphi A

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Anatum

characteristic: organism

text: Anatum

text: Subsp. I

characteristic: title


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Bredeney

text: Bredeney

text: Subsp. I


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Smithsonian Institution NMNH

text: public

tag: Namespace:Smithsonian Institution NMNH

text: Trinity assembly of Calvadosia cruxmelitensis

characteristic: description

text: Allen G. Collins

characteristic: identified by

text: Calvadosia cruxmelitensis

text: Calvadosia cruxmelitensis

text: Calvadosia cruxmelitensis transcriptome


characteristic: ENA-FIRST-PUBLIC

text: Smithsonian Institution NMNH

text: public

text: Transcriptome assembly of Haliclystus sanjuanensis at various juvenile and adult stages

text: USA

characteristic: geographic location (country and/or sea)

text: Eastport, ME

characteristic: geographic location (region and locality)

text: Lat=48° 32' 8.79'' N; Long=123° 5' 29.4252'' W

characteristic: lat lon

text: Haliclystus sanjuanensis

text: Haliclystus sanjuanensis

text: Haliclystus sanjuanensis transcriptome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Smithsonian Institution NMNH

text: public

text: Transcriptme assembly of Craterolophus convolvulus

text: USA

text: Rye Harbor, Rye NH

text: Lat=43° 0' 4.5432'' N; Long=70° 44' 35.5128'' W

text: Craterolophus convolvulus

characteristic: organism

text: Craterolophus convolvulus

text: Craterolophus convolvulus transcriptome


text: PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Salmonella 4,12:i:- CT1 monophasique

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: title


text: Smithsonian Institution NMNH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Transcriptome assembly of Lucernaria quadricornis

text: USA

text: Subtidal zone at Shoals Marine Laboratories, Appledore Island, ME

text: Lat=42° 59' 18.6684'' N; Long=70° 36' 51.7212'' W

text: Lucernaria quadricornis

text: Lucernaria quadricornis

text: Lucernaria quadricornis transcriptome


text: Smithsonian Institution NMNH

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Transcriptome of the Cerianthus_borealis

text: Cerianthus borealis

text: Cerianthus borealis

text: Cerianthus borealis transcriptome


characteristic: ENA-CHECKLIST

text: IMPERIAL COLLEGE LONDON

text: public

tag: Namespace:IMPERIAL COLLEGE LONDON

text: Cryptococcus neoformans var. grubii

text: Cryptococcus neoformans var. grubii

text: Cryptococcus neoformans


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Shigella flexneri X variant

text: Shigella flexneri X variant


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Shigella sonnei

text: Shigella sonnei


characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 1c

text: Shigella flexneri 1c


characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 2a

text: Shigella flexneri 2a


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Shigella dysenteriae

characteristic: organism

text: Shigella dysenteriae


text: TCD

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC first public

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Clinical M. tuberculosis strain isolated in 1995 in Hospital Universitario Miguel Servet, Zaragoza, Spain.

characteristic: title


text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ireland

text: Homo sapiens

text: Human

text: Shigella boydii

text: Shigella boydii


text: public

characteristic: SRA accession

tag: Namespace:WELLCOME TRUST CENTRE FOR HUMAN GENETICS, UNIVERSITY OF OXFORD

characteristic: Submitter Id

text: restricted access

characteristic: collecting institution

text: restricted access

characteristic: collector name

text: Hepatitis C

text: restricted access

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: centuries

characteristic: host age

text: human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

characteristic: host subject id

text: Hepatitis C virus

characteristic: receipt date

text: Hepatitis C virus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WELLCOME TRUST CENTRE FOR HUMAN GENETICS, UNIVERSITY OF OXFORD

characteristic: INSDC center name

text: public

text: restricted access

characteristic: collection date

text: restricted access

text: Hepatitis C

characteristic: common name

text: restricted access

characteristic: geographic location (country and/or sea)

text: human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: isolate

text: Hepatitis C virus

characteristic: organism

text: Hepatitis C virus


text: PASTEUR

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: title


characteristic: ENA-CHECKLIST

text: UC SANTA CRUZ

text: public

tag: Namespace:UC SANTA CRUZ

text: SPAdes Illumina assembly of C. elegans

characteristic: description

text: Caenorhabditis elegans

text: Caenorhabditis elegans


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NOFIMA

text: public

text: Atlantic salmon

text: Recirculating Acaqulture System

characteristic: environment (biome)

text: Aquaculture

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Salmo salar

text: Barrier

characteristic: project name

text: Salmo salar

text: PacBio

characteristic: sequencing method

text: Atlantic salmon microbiota


characteristic: External Id

text: UNSW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: APGI

characteristic: collected by

text: human

characteristic: common name

text: Tumour DNA from liver metastasis of pancreatic cancer patient TKCC19LO

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Liver

characteristic: tissue type


text: Influenzavirus B

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Influenzavirus B

text: Influenza B virus (B/Odessa/3886/2010)

text: Influenza B virus (B/Odessa/3886/2010)

characteristic: title


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Shigella flexneri 3a

text: Shigella flexneri 3a


characteristic: External Id

text: Lausanne University Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Switzerland

text: not provided

characteristic: host health state

text: Human

text: Colonization

text: Burkholderia stabilis

text: Burkholderia stabilis


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 4c

characteristic: organism

text: Shigella flexneri 4c


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 6

text: Shigella flexneri 6


text: University Hospital Galway

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Shigella sonnei

text: Shigella sonnei


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 3b

text: Shigella flexneri 3b

characteristic: title


text: Lausanne University Hospital

text: public

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not provided

text: Human

characteristic: host scientific name

text: Colonisation

text: Burkholderia stabilis

text: Burkholderia stabilis


text: Lausanne University Hospital

text: public

text: Switzerland

text: Environmental

characteristic: isolate

text: Environmental

characteristic: isolation source

text: Burkholderia stabilis

text: Burkholderia stabilis


characteristic: External Id

text: Centre of Biotechnology of Sfax

characteristic: INSDC center name

text: public

tag: Namespace:Centre of Biotechnology of Sfax

text: feces metagenome

text: feces metagenome

text: metagenomic contigs


text: Centre of Biotechnology of Sfax

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: metagenomic contigs from dromedary fecal sample library

characteristic: description

text: feces metagenome

text: feces metagenome

text: metagenomic contigs


characteristic: ENA-CHECKLIST

text: Saolta

text: public

characteristic: INSDC status

text: IRL

text: Klebsiella

characteristic: genus

text: Ireland

text: Homo sapiens

characteristic: host

text: Homo sapiens

text: Human

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

type: AMR curated data - CABBAGE

value: cefpodoxime

value: EUCAST

value: broth dilution

value: Vitek

value: susceptible

value: Klebsiella pneumoniae

value: amoxicillin-clavulanic acid

value: resistant

value: tigecycline

value: amikacin

value: cefotaxime

value: cefpodoxime-clavulanic acid

value: ampicillin

value: ertapenem

value: meropenem

value: intermediate

value: piperacillin-tazobactam

value: gentamicin

value: cefoxitin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Saolta

text: public

text: IRL

characteristic: SRA accession

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: urinary tract

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

value: cefpodoxime

value: EUCAST

value: broth dilution


text: University Hospital Galway

text: public

characteristic: Submitter Id

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Shigella flexneri 2a

text: Shigella flexneri 2a

characteristic: title


characteristic: External Id

text: BAYLOR COLLEGE OF ME

text: public

tag: Namespace:BAYLOR COLLEGE OF ME

text: human

characteristic: common name

text: Profiles of multiple biopsies of a high-risk prostate tumor

text: Homo sapiens

text: Homo sapiens

text: CRPC


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Biosystems and Integrative Sciences Institute

characteristic: cell line

text: human

text: ChIP-Seq

text: Homo sapiens

text: Homo sapiens

text: DLD-1 cells


characteristic: ENA-CHECKLIST

text: Biosystems and Integrative Sciences Institute

characteristic: INSDC last update

text: public

text: human

text: ChIP-Seq

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: DLD-1 cells


text: IDIBAPS

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

text: Homo sapiens

text: DNA extracted from DLBCL tumors biopsies


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 4/4/2013 (Pre)

text: TRUE

text: Mayo Standard

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: Yes

text: TRUE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Married

text: human gut metagenome

text: Ulcerative colitis

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: positive

text: Missing: Not reported

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: Pre

text: Pre

text: male

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 4/15/2013 (Day 7)

characteristic: description

text: TRUE

text: Mayo Standard

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: no IBS

text: Yes

text: TRUE

text: Married

text: human gut metagenome

characteristic: organism

text: Ulcerative colitis

text: Mayo Clinic

text: TRUE

text: positive

text: Missing: Not reported

text: TRUE

text: C

text: stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Day 28

text: TRUE

text: Mayo Standard

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: Yes

text: TRUE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Married

text: human gut metagenome

text: Ulcerative colitis

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: positive

text: Missing: Not reported

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: Missing: Not reported

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NA-Donor

text: 4/5/2013 (Donor)

characteristic: description

text: TRUE

text: Mayo Standard

text: Donor

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: Donor

text: Missing: Restricted access

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

text: C

text: stool

text: human gut metagenome

text: Donor

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Pre

text: TRUE

text: Mayo Standard

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: Yes

text: TRUE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Married

text: human gut metagenome

text: Ulcerative colitis

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: Pre

text: Pre

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 4/18/13 (Day 7)

characteristic: description

text: TRUE

text: Mayo Standard

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: no IBS

text: Yes

text: TRUE

text: Married

text: human gut metagenome

characteristic: organism

text: Ulcerative colitis

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

text: C

text: stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 5/10/13 (Day 28)

text: TRUE

text: Mayo Standard

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: Yes

text: TRUE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Married

text: human gut metagenome

text: Ulcerative colitis

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: Missing: Not reported

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NA-Donor

text: Donor

characteristic: description

text: TRUE

text: Mayo Standard

text: Donor

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: Donor

text: Missing: Restricted access

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

text: C

text: stool

text: human gut metagenome

text: Donor

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Pre

text: TRUE

text: Mayo Standard

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: Yes

text: TRUE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Married

text: human gut metagenome

text: Crohn's

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: Pre

text: Pre

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 1/2/13 (Day 7)

characteristic: description

text: TRUE

text: Mayo Standard

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: no IBS

text: Yes

text: TRUE

text: Married

text: human gut metagenome

characteristic: organism

text: Crohn's

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

text: C

text: stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Day 28

text: TRUE

text: Mayo Standard

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: Yes

text: TRUE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Married

text: human gut metagenome

text: Crohn's

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: Missing: Not reported

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NA-Donor

text: 12/28/12 (Donor)

characteristic: description

text: TRUE

text: Mayo Standard

text: Donor

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: Donor

text: Missing: Restricted access

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

text: C

text: stool

text: human gut metagenome

text: Donor

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Pre Sample

text: TRUE

text: spouse

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: No

text: FALSE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Married

text: human gut metagenome

text: no IBD

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: no testing done here

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: Pre

text: Pre

text: female

characteristic: sex

characteristic: timepoint