text: KI-BN

text: public

text: mouse embryonic cell deficient in Tet1, Tet2 and Tet3

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mouse IgG ChIP-seq sample


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KI-BN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: mouse embryonic cell

characteristic: cell line

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mouse IgG ChIP-seq sample

characteristic: title


text: KI-BN

text: public

text: Oct4_AF1759_wild-type-mES_Replicate-1_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: Oct4_AF1759_wild-type-mES_Replicate-2_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: Oct4_ab19857_wild-type-mES_Replicate-1_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: Oct4_ab19857_wild-type-mES_Replicate-2_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Oct4 ChIP-seq sample


text: KI-BN

text: public

text: Rabbit_IgG_sc-2027_wild-type-mES_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Rabbit IgG ChIP-seq sample


text: KI-BN

text: public

text: n-Myc_ab16898_Dnmt-TKO-mES_Replicate-1_Batch-2

text: mouse embryonic cell deficient in Dnmt1, Dnmt3a and Dnmt3b

text: house mouse

text: Mus musculus

text: Mus musculus

text: n-Myc ChIP-seq sample


text: KI-BN

text: public

text: n-Myc_ab16898_Dnmt-TKO-mES_Replicate-2_Batch-2

text: house mouse

text: Mus musculus

text: Mus musculus

text: n-Myc ChIP-seq sample


text: KI-BN

text: public

text: n-Myc_ab16898_Tet-TKO-mES_Replicate-1_Batch-2

text: house mouse

text: Mus musculus

text: Mus musculus

text: n-Myc ChIP-seq sample


text: KI-BN

text: public

text: n-Myc_ab16898_Tet-TKO-mES_Replicate-2_Batch-2

text: house mouse

text: Mus musculus

text: Mus musculus

text: n-Myc ChIP-seq sample


text: KI-BN

text: public

text: n-Myc_ab16898_wild-type-mES_Replicate-1_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: n-Myc ChIP-seq sample


text: KI-BN

text: public

text: n-Myc_ab16898_wild-type-mES_Replicate-2_Batch-2

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: n-Myc ChIP-seq sample


text: KI-BN

text: public

text: HOXB13_sc-66923_LHSAR-HOXB13-Transduced_Replicate-1_Batch-3

text: HOXB13 transduced LHSAR cell

text: human

text: Homo sapiens

text: Homo sapiens

text: HOXB13 ChIP-seq sample


text: KI-BN

text: public

text: HOXB13_sc-66923_LHSAR-HOXB13-Transduced_Replicate-2_Batch-3

text: HOXB13 transduced LHSAR cell

text: human

text: Homo sapiens

text: Homo sapiens

text: HOXB13 ChIP-seq sample


text: KI-BN

text: public

text: Rabbit_IgG_sc-2027_LHSAR-HOXB13-Transduced_Batch-3

text: HOXB13 transduced LHSAR cell

text: human

text: Homo sapiens

text: Homo sapiens

text: Rabbit IgG ChIP-seq sample


text: KI-BN

text: public

text: LoVo cell

text: human

text: Homo sapiens

text: Homo sapiens

text: CEBPB ChIP-exo sample


text: KI-BN

text: public

text: MAX_CellSignalingTechnology-4732S_LoVo_Batch-4

text: LoVo cell

text: human

text: Homo sapiens

text: Homo sapiens

text: MAX ChIP-exo sample


text: KI-BN

text: public

text: LoVo cell

text: human

text: Homo sapiens

text: Homo sapiens

text: MAX ChIP-exo sample


text: KI-BN

text: public

text: LoVo cell

text: human

text: Homo sapiens

text: Homo sapiens

text: Rabbit IgG ChIP-exo sample


text: KI-BN

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: ATAC-seq sample


text: KI-BN

text: public

text: mouse embryonic cell deficient in Tet1, Tet2 and Tet3

text: house mouse

text: Mus musculus

text: Mus musculus

text: ATAC-seq sample


text: KI-BN

text: public

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: ATAC-seq sample


text: KI-BN

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Whole genome bisulfite sequencing (WGBS) sample


text: KI-BN

text: public

text: GP5D cell

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: LHSAR cell with HOXB13 transduced

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: LHSAR cell

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: LoVo cell

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: KI-BN

text: public

text: VCap cell

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: mouse embryonic cell

text: house mouse

text: Mus musculus

text: Mus musculus


Kajaani 6

text: Functional Genomics Genter Zurich

text: public

text: Kajaani 6

tag: Namespace:Functional Genomics Genter Zurich

characteristic: collection date

text: Strain described in Ekman et al., Clinical Infectious Diseases, Vol. 17, No. 3 (Sep., 1993), pp. 420-425

characteristic: description

text: Finland

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Kajaani 6

characteristic: isolate

text: Clinical isolate

characteristic: isolation source

text: Chlamydia pneumoniae

text: Chlamydia pneumoniae

text: Chlamydia pneumonia Kajaani 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:The Plant Phenotyping and Imaging Research Centre

text: ACA CTG ACG ACA TGG TTC TAC A TAC GGT AGC AGA GAC TTG GTC T

characteristic: adapters

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Canada

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured bacterium

text: CTA CGG GGG GCA GCA G GGA CTA CCG GGG TAT CT

characteristic: pcr primers

text: P2IRC 1.3 Soil microbiome as plant phenotype

characteristic: project name

text: uncultured bacterium

text: amplicon-based

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Plant Phenotyping and Imaging Research Centre

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil

text: soil

text: soil

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: amplicon-based

text: soil

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI-SHENZHEN

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: the well-characterized NA12878


text: ROSWELL PARK CANCER INSTITUTE

text: public

tag: Namespace:ROSWELL PARK CANCER INSTITUTE

text: human

text: Control FaDu cells of experiment 1

characteristic: description

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated FaDu cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control FaDu cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated FaDu cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control FaDu cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated FaDu cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control HSC2 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated HSC2 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control HSC2 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated HSC2 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control HSC2 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated HSC2 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control H522 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated H522 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control H522 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated H522 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control H522 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated H522 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control SCC4 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated SCC4 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control SCC4 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated SCC4 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control SCC4 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated SCC4 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ANAND

text: public

text: terrestrial biome

characteristic: environment (biome)

text: research facility

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: India

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ceacum

characteristic: host body site

text: Chicken

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Host Transcriptomics and gut microbiome analysis in broilers with contrasting Feed Conversion Ratio

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Chicken ceacal microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: AALBORG UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:AALBORG UNIVERSITY

characteristic: Submitter Id

text: Candidatus Nitrospira inopinata

characteristic: organism

text: Candidatus Nitrospira inopinata

text: Nitrospira inopinata genome sequencing

characteristic: title

type: has member


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Centre national de la recherche scientifique

text: Asian tiger mosquito

characteristic: common name

text: Aiton

characteristic: description

text: France

characteristic: locality

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: Centre national de la recherche scientifique

text: public

text: Asian tiger mosquito

text: Aiton

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Ajdov�?ina

text: Slovenia

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Bretenoux

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Bre�ice

text: Slovenia

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Divjak�

text: Albania

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Fier

text: Albania

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Foggia

text: Italy

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Grande Chaloupe

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Montauban

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Novo Mesto

text: Slovenia

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Nyons

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Plaine des Palmistes

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Pivka

text: Slovenia

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Povidence (St Denis)

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Ruoms

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Salazie

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


SMH

text: public

text: SMH

text: Asian tiger mosquito

text: St Martin d'Heres

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: St Martin d'Heres

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: St Benoit

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: St Joseph

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: St Leu

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: St Louis

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Ste Marie

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: St Priest

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: St Paul

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: St Pierre

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Ste Rose

text: Reunion island

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Kanchaburi (Sai Yok district)

text: Thailand

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Torino

text: Italy

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Valence

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Les Vans

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: public

text: Asian tiger mosquito

text: Villefranche sur Saone

text: France

text: Aedes albopictus

text: Aedes albopictus

text: Aedes albopictus invasive populations


text: CCMAR

text: public

text: Taxonomic information only

text: synthetic metagenome

text: synthetic metagenome

text: Semi-synthetic metagenome 1


text: CCMAR

text: public

text: Long Reads

text: synthetic metagenome

text: synthetic metagenome

text: Semi-synthetic metagenome 4


text: CCMAR

text: public

text: General mix

text: synthetic metagenome

text: synthetic metagenome

text: Semi-synthetic metagenome 5


text: CCMAR

text: public

text: General with virus

text: synthetic metagenome

text: synthetic metagenome

text: Semi-synthetic metagenome 6


text: CCMAR

text: public

text: 4 bacterial organisms bloom

text: synthetic metagenome

text: synthetic metagenome

text: Semi-synthetic metagenome 2


E-MTAB-5578:Sample 1

text: Center for Biotechnology - CeBiTec

text: public

text: E-MTAB-5578:Sample 1

tag: Namespace:Center for Biotechnology - CeBiTec

text: ArrayExpress

characteristic: broker name

text: Protocols: NA samples were obtained from fermentation of the Xcc strain B100 in minimal media named XMD (Schatschneider et al., 2013) with 30 g/L glucose as a sole carbon source and 0.4 g/L KNO3 as the sole nitrogen source . the RNA probes were harvested in the middle of the growth phase at an OD = 1 The library was prepared following the protcol published by Pfeifer-Sancar et al., 2013.

text: media

characteristic: growth condition

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: Sample 1


characteristic: ENA-CHECKLIST

text: CHALMERS UNIVERSITY OF TECHNOLOGY

text: public

tag: Namespace:CHALMERS UNIVERSITY OF TECHNOLOGY

text: The thermophilic zygomcete Rhizomucor pusillus is a member of the Mucorales isolated from compost soil in Vietnam. Fast growth and rapid spore production mark R. pusillus as a pioneer species among mycoflora in compost. The high temperature optima of R. pusillus enzymes of around 60°C makes the fungus an interesting source of industrial biocatalysts. Sequencing of the R. pusillus genome will provide the necessary information to study this fungus and its enzymatic system in more detail.

text: Rhizomucor pusillus

text: Rhizomucor pusillus

text: Genome and transcriptome sequencing of the thermophilic fungus Rhizomucor pusillus


characteristic: ENA-FIRST-PUBLIC

text: CGR

text: public

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Genome shotgun sequencing of Campylobacter isolate


characteristic: INSDC first public

text: public

tag: Namespace:Institute of Molecular Life Sciences, University of Zurich

text: ArrayExpress

text: macrophage

characteristic: cell type

text: human

text: Protocols: Primary ccRCC tissue samples were obtained from the University Health Network (UHN) Biospecimen Sciences Program and from the Cooperative Health Tissue Network (CHTN) from generously consenting patients under University Health Network Research Ethics Board approval. Tumor samples were digested to generate single-cell suspensions as previously described (Gedye and Ailles, 2013). Cells were then viably frozen in 10% DMSO in D-SDCM complemented with 10% FBS. Viably frozen samples were resuscitated as previously described, incubated with the Zombie NIR dye (Biolegend) for dead cell exclusion for 15 min at room temperature, blocked with FcR blocking reagent (Miltenyi Biotech) for 10 min at 4 °C, and stained for 30 min at 4 °C with the antibodies indicated in Table S3. As shown in Figures S4C and S7B, cell subsets were sorted as CD14+/HLA-DR+/CD204-/CD38-/CD206- (Control) and CD14+/HLA-DR+/CD204+/CD38+/CD206- (M-5) , CD3+/CD8+/PD-1- (CD8+/PD-1- T cells) and CD3+/CD8+/PD-1+ (CD8+/ PD-1+ T cells) using a 100-μm nozzle on a FACS Aria III 5L Cell sorter. Cells were harvested in RPMI-FBS (10%) medium and immediately used for RNA purification using the PicoPure RNA Isolation Kit (ThermoFischer) according to manufacturer’s instructions 4 ng RNA was used to generate the sequencing libraries using the SMARTer Stranded Total RNA-Seq Kit - Pico Input Mammalian (Takara Bio) and Nextera XT (Illumina) according to manufacturer’s instructions

text: clear cell renal carcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: CD204-negative, CD38-negative

characteristic: phenotype

text: Homo sapiens


text: Institute of Molecular Life Sciences, University of Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: macrophage

text: human

text: clear cell renal carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: CD204-negative, CD38-negative

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: macrophage

text: human

characteristic: common name

characteristic: description

text: clear cell renal carcinoma

text: Homo sapiens

text: Homo sapiens

text: kidney

text: CD204-positive, CD38-positive

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: T cell

text: human

text: clear cell renal carcinoma

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens


text: ANAND

text: public

characteristic: collection date

text: Terrestrial

characteristic: environment (biome)

text: Research station

characteristic: environment (feature)

text: Organic material

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cecum

characteristic: host body site

text: Chicken

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Chicken Cecal Microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STATENS SERUM INSTITUT

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:STATENS SERUM INSTITUT

characteristic: Submitter Id

text: Norovirus GII

characteristic: organism

text: Norovirus GII

text: Norovirus deep sequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: STATENS SERUM INSTITUT

characteristic: INSDC first public

text: public

text: Norovirus GI

text: Norovirus GI

text: Norovirus deep sequencing


QS-1-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: QS-1-poly (A)

text: Norovirus GI

text: Norovirus GI

text: Norovirus deep sequencing


QS-2-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: QS-2-poly (A)

text: Norovirus GI

text: Norovirus GI

text: Norovirus deep sequencing


QS-3-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: QS-3-poly (A)

text: Norovirus GI

text: Norovirus GI

text: Norovirus deep sequencing


QS-4-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: QS-4-poly (A)

text: Norovirus GI

text: Norovirus GI

text: Norovirus deep sequencing


QS-5-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: QS-5-poly (A)

text: Norovirus GI

text: Norovirus GI

text: Norovirus deep sequencing


QS-6-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: QS-6-poly (A)

text: Norovirus GI

text: Norovirus GI

text: Norovirus deep sequencing


QS-7-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: QS-7-poly (A)

text: Norovirus GII

text: Norovirus GII

text: Norovirus deep sequencing


QS-8-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: QS-8-poly (A)

text: Norovirus GII

text: Norovirus GII

text: Norovirus deep sequencing


QS-9-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: QS-9-poly (A)

text: Norovirus GII

text: Norovirus GII

text: Norovirus deep sequencing


S-1-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: S-1-poly (A)

text: Norovirus GII

text: Norovirus GII

text: Norovirus deep sequencing


S-2-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: S-2-poly (A)

text: Norovirus GI

text: Norovirus GI

text: Norovirus deep sequencing


S-3-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: S-3-poly (A)

text: Norovirus GII

text: Norovirus GII

text: Norovirus deep sequencing


S-4-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: S-4-poly (A)

text: Norovirus GI

text: Norovirus GI

text: Norovirus deep sequencing


S-5-poly (A)

text: STATENS SERUM INSTITUT

text: public

text: S-5-poly (A)

text: Norovirus GII

text: Norovirus GII

text: Norovirus deep sequencing


text: KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

text: public

tag: Namespace:KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

text: metagenome

text: metagenome

text: compost from organic waste


text: KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

text: public

text: metagenome

text: metagenome

text: compost from organic waste


text: HCMR-IMBBC

text: public

characteristic: collection date

text: aquatic

characteristic: environment (biome)

text: lagoon

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sediment metagenome

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Station in the channel connecting the Logarou lagoon to the Gulf (replicate A)


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: lagoon

text: sediment

text: Greece

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: Station in the channel connecting the Logarou lagoon to the Gulf (replicate C)


characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: aquatic

characteristic: environment (biome)

text: lagoon

text: sediment

text: Greece

text: metagenome

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Station inside the Logarou lagoon (replicate A)

characteristic: title


text: HCMR-IMBBC

text: public

text: aquatic

text: lagoon

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sediment metagenome

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Station inside the Logarou lagoon (replicate B)


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: lagoon

text: sediment

text: Greece

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: Station inside the Logarou lagoon (replicate C)


characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: aquatic

characteristic: environment (biome)

text: sea

text: sediment

text: Greece

text: metagenome

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Station in Kalamitsi outside of the Gulf (replicate A)

characteristic: title


text: HCMR-IMBBC

text: public

text: aquatic

text: sea

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sediment metagenome

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Station in Kalamitsi outside of the Gulf (replicate B)


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: sea

text: sediment

text: Greece

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: Station in Kalamitsi outside of the Gulf (replicate C)


characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: aquatic

characteristic: environment (biome)

text: river

text: sediment

text: Greece

text: metagenome

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Station in the delta of the Arachthos river (replicate A)

characteristic: title


text: HCMR-IMBBC

text: public

text: aquatic

text: river

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sediment metagenome

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Station in the delta of the Arachthos river (replicate B)


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: river

text: sediment

text: Greece

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: Station in the delta of the Arachthos river (replicate C)


characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: aquatic

characteristic: environment (biome)

text: river

text: sediment

text: Greece

text: metagenome

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Station in the mouth of the Arachthos river (replicate A)

characteristic: title


text: HCMR-IMBBC

text: public

text: aquatic

text: river

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sediment metagenome

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Station in the mouth of the Arachthos river (replicate B)


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: river

text: sediment

text: Greece

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: Station in the mouth of the Arachthos river (replicate C)


characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: aquatic

characteristic: environment (biome)

text: river

text: sediment

text: Greece

text: metagenome

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Station in the village of Neochori (replicate A)

characteristic: title


text: HCMR-IMBBC

text: public

text: aquatic

text: river

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sediment metagenome

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

text: Station in the village of Neochori (replicate B)


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: aquatic

text: river

text: sediment

text: Greece

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: sediment metagenome

text: sediment

text: pyrosequencing

characteristic: sequencing method

text: Station in the village of Neochori (replicate C)


characteristic: ENA-FIRST-PUBLIC

text: FISABIO - Public Health

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:FISABIO - Public Health

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: human-associated habitat

characteristic: environment (biome)

text: human saliva

text: saliva

text: human-oral

characteristic: environmental package

text: Slovakia

text: human-oral

characteristic: humam oral environmental package

text: metagenome

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AUSTRALIAN CENTRE FOR ECOGENOMICS

characteristic: INSDC center name

text: public

tag: Namespace:AUSTRALIAN CENTRE FOR ECOGENOMICS

text: human

text: human-associated habitat

text: human saliva

characteristic: environment (feature)

text: saliva

characteristic: environment (material)

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

text: metagenome

text: Homo sapiens

text: Saliva from Slovakia

text: Homo sapiens

text: Illumina MiSeq


characteristic: ENA-FIRST-PUBLIC

text: AUSTRALIAN CENTRE FOR ECOGENOMICS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: human-associated habitat

text: human saliva

text: saliva

text: Slovakia

text: human-oral

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Saliva

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: WELLCOME TRUST SANGER INSTITUTE

text: public

tag: Namespace:WELLCOME TRUST SANGER INSTITUTE

text: Clostridioides difficile

characteristic: organism

text: Clostridioides difficile

characteristic: title


TY

characteristic: External Id

text: MPI-EVA

characteristic: INSDC center name

text: public

text: TY

text: human

characteristic: common name

text: TY.2.2M snp bam file

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: RIVM

text: public

text: Acinetobacter ursingii

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Acinetobacter ursingii

text: Acinetobacter ursingii


text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: tomato

text: Auspicio

characteristic: cultivar

text: Solanum lycopersicum

text: Solanum lycopersicum

text: roots

characteristic: tissue type

text: Control 24 h


text: CREA-ORT

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: tomato

text: Auspicio

text: Solanum lycopersicum

text: Solanum lycopersicum

text: roots

text: Control 48 h


characteristic: ENA-CHECKLIST

text: CREA-ORT

text: public

text: tomato

text: Auspicio

text: Solanum lycopersicum

text: Solanum lycopersicum

text: roots

text: Control 72 h


characteristic: ENA-LAST-UPDATE

text: CREA-ORT

text: public

text: tomato

text: Auspicio

text: Solanum lycopersicum

text: Solanum lycopersicum

text: roots

text: Humic acid 24 h


text: CREA-ORT

text: public

text: tomato

text: Auspicio

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: roots

text: Humic acid 48 h


text: CREA-ORT

text: public

text: tomato

text: Auspicio

text: Solanum lycopersicum

text: Solanum lycopersicum

text: roots

text: Humic acid 72 h

characteristic: title


characteristic: External Id

text: CREA-ORT

text: public

text: tomato

text: Auspicio

text: Solanum lycopersicum

text: Solanum lycopersicum

text: roots

text: Sterile compost tea 24 h


text: CREA-ORT

characteristic: INSDC center name

text: public

text: tomato

text: Auspicio

text: Solanum lycopersicum

text: Solanum lycopersicum

text: roots

text: Sterile compost tea 48 h


text: CREA-ORT

text: public

text: tomato

characteristic: common name

text: Auspicio

text: Solanum lycopersicum

text: Solanum lycopersicum

text: roots

text: Sterile compost tea 72 h


text: Institute of Tropical Medicine, Antwerp

text: public

tag: Namespace:Institute of Tropical Medicine, Antwerp

text: Improvement of the BPK282/0cl4 (2011) reference by PacBio sequencing

characteristic: description

text: Leishmania donovani BPK282A1

text: Leishmania donovani BPK282A1


characteristic: ENA-FIRST-PUBLIC

text: OX

text: public

characteristic: broker name

text: Streptococcus agalactiae

text: Streptococcus agalactiae


text: Institute of Tropical Medicine, Antwerp

characteristic: INSDC first public

text: public

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani


text: University Hospital Galway

characteristic: INSDC last update

text: public

tag: Namespace:University Hospital Galway

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Agama

text: Agama

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Enteritidis

characteristic: organism

text: Enteritidis

text: Subsp. I


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

text: Subsp. I

characteristic: title


text: University Hospital Galway

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Weltevreden

text: Weltevreden

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Paratyphi A

text: Paratyphi A

text: Subsp. I


text: public

tag: Namespace:LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI

characteristic: description

text: metagenome

text: metagenome


tag: attribute

characteristic: ENA-CHECKLIST

text: LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI

text: public

text: metagenome

text: metagenome


Bacillus cereus str. 16-00175

characteristic: ENA-LAST-UPDATE

text: INSTITUT PASTEUR

text: public

text: Bacillus cereus str. 16-00175

tag: Namespace:INSTITUT PASTEUR

text: Bacillus cereus

text: Bacillus cereus

characteristic: strain

text: French clinical and environmental Bacillus cereus isolates genome sequencing


Bacillus cereus str. 16-00183

text: INSTITUT PASTEUR

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bacillus cereus str. 16-00183

text: Bacillus cereus

text: Bacillus cereus


Bacillus cereus str. 16-00184

text: INSTITUT PASTEUR

text: public

text: Bacillus cereus str. 16-00184

characteristic: Submitter Id

text: Bacillus cereus

characteristic: organism

text: Bacillus cereus


Bacillus cereus str. 16-00187

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: INSTITUT PASTEUR

text: public

text: Bacillus cereus str. 16-00187

text: Bacillus cereus

text: Bacillus cereus


Bacillus cereus str. 16-00188

text: INSTITUT PASTEUR

characteristic: INSDC center name

text: public

text: Bacillus cereus str. 16-00188

text: Bacillus cereus

text: Bacillus cereus

characteristic: title


Bacillus cereus str. 16-00195

text: INSTITUT PASTEUR

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bacillus cereus str. 16-00195

text: Bacillus cereus

text: Bacillus cereus


Bacillus cereus str. 16-00196

text: INSTITUT PASTEUR

text: public

text: Bacillus cereus str. 16-00196

text: Bacillus cereus

text: Bacillus cereus


Bacillus cereus str. 16-00198

text: INSTITUT PASTEUR

text: public

text: Bacillus cereus str. 16-00198

text: Bacillus cereus

text: Bacillus cereus


text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

tag: Namespace:FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: collection date

text: DNA-based analysis

text: limestone aquifers

characteristic: environment (biome)

text: limestone aquifers

characteristic: environment (feature)

text: groundwater

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: unidentified bacterium

text: AquaDiva

characteristic: project name

text: unidentified bacterium

text: Illumina MiSeq

characteristic: sequencing method

text: bacterial diversity in groundwater

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RNA-based analysis

characteristic: description

text: limestone aquifers

text: limestone aquifers

text: groundwater

text: Germany

text: mimarks-survey

text: unidentified bacterium

characteristic: organism

text: AquaDiva

text: unidentified bacterium

text: Illumina MiSeq

text: bacterial diversity in groundwater

text: water


text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: DNA-based analysis

text: limestone aquifers

characteristic: environment (biome)

text: limestone aquifers

characteristic: environment (feature)

text: groundwater

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: unidentified bacterium

text: AquaDiva

text: unidentified bacterium

text: Illumina MiSeq

text: denitrifier diversity in groundwater

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

characteristic: organism

text: Enteritidis

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Irumu

text: Irumu

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Chester

text: Chester

text: Subsp. I

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Stanley

text: Stanley

text: Subsp. I


text: RWTH Aachen

text: public

tag: Namespace:RWTH Aachen

text: Cuscuta campestris

text: Cuscuta campestris

text: Cuscuta campestris


text: ED

text: public

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GOTHENBURG UNIVERISITY

text: public

tag: Namespace:GOTHENBURG UNIVERISITY

text: human

text: Homo sapiens

text: Homo sapiens


text: TEAGASC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: metagenome

text: metagenome

text: BTM storage


text: UNIVERSITY OF LEIPZIG

text: public

tag: Namespace:UNIVERSITY OF LEIPZIG

characteristic: Submitter Id

text: clinical isolate

text: Germany

text: diseased

characteristic: host health state

text: Homo sapiens

text: clonal isolate

text: fecal samples

characteristic: isolation source

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: Cloned DNA sequence oamplified from a DNA extract of a pottery swab sample.

text: Fabaceae environmental sample

text: Fabaceae environmental sample


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

text: Cloned DNA sequence amplified from a DNA extract of a pottery swab sample.

text: unidentified

text: unidentified

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MANCHESTER

text: public

text: Fabaceae environmental sample

text: Fabaceae environmental sample


text: public

tag: Namespace:DEPARTMENT OF LIFE SCIENCES, HEM. NORTH GUJARAT UN

characteristic: collection date

text: METAGENOME STUDY COLLECTED FROM THE HOTSPRING SAMPLE COLLECTED FROM INDIA

text: HOT

characteristic: environment (biome)

text: EXTREAME

characteristic: environment (feature)

text: WATER

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Bacillus acidicola

text: ANALYSIS OF HOTSPRING METAGENOME

characteristic: project name

text: Bacillus acidicola

text: sediment

characteristic: sediment environmental package

characteristic: sequencing method

text: HOTSPRING STUDY FROM INDIA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Shigella flexneri 2a

characteristic: organism

text: Shigella flexneri 2a

text: Shigella flexneri 2a

characteristic: serovar


IFREMER

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ED

text: public

text: IFREMER

text: Pacific oyster

characteristic: common name

text: Pooled DNA from 16 C.gigas individuals from IFREMER, France.

characteristic: description

text: Crassostrea gigas

text: Crassostrea gigas

text: IFREMER

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ED

text: public

text: Pacific oyster

text: Pooled DNA from 29 C.gigas individuals from an oyster hatchery in France.

text: Crassostrea gigas

text: Crassostrea gigas


text: ED

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Pacific oyster

text: Pooled DNA from 26 C.gigas individuals from an oyster hatchery in France.

text: Crassostrea gigas

text: Crassostrea gigas


text: ED

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Pacific oyster

text: Pooled DNA from 29 C.gigas individuals from an oyster hatchery in France

text: Crassostrea gigas

text: Crassostrea gigas


text: ED

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Pacific oyster

text: Pooled DNA from 28 C.gigas individuals from an oyster hatchery in France.

text: Crassostrea gigas

text: Crassostrea gigas


GUERNS

text: ED

text: public

text: GUERNS

text: Pacific oyster

text: Pooled DNA from 47 C.gigas individuals Guernsey Sea Farms, UK.

text: Crassostrea gigas

text: Crassostrea gigas

text: GUERNS


SEASALT

text: ED

text: public

text: SEASALT

text: Pacific oyster

text: Pooled DNA from 13 C.gigas individuals from Seasalter Shellfish, UK.

text: Crassostrea gigas

text: Crassostrea gigas

text: SEASALT


MALD

text: ED

text: public

text: MALD

text: Pacific oyster

text: Pooled DNA from 15 C.gigas individuals from Maldon,UK.

text: Crassostrea gigas

text: Crassostrea gigas

text: MALD


text: public

tag: Namespace:Hemchandracharya north gujarat university

characteristic: collection date

text: Hot spring

characteristic: environment (biome)

text: Extream

characteristic: environment (feature)

text: Sediment

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Acidipropionibacterium acidipropionici

text: Analysis of odisha hotspring metagenome

characteristic: project name

text: Acidipropionibacterium acidipropionici

text: sediment

characteristic: sediment environmental package

text: Illumina

characteristic: sequencing method


text: gut metagenome

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: gut metagenome

characteristic: common name

text: gut metagenome

characteristic: organism

text: gut metagenome

characteristic: subject id

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Germany

characteristic: country

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

text: Germany

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: P 73

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Germany

text: Homo sapiens

text: Yes

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: P 21


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Germany

text: Homo sapiens

text: Yes

text: swab

characteristic: isolation source host associated

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: P 28


characteristic: INSDC last update

text: public

text: Germany

text: Homo sapiens

text: Yes

text: trachealsecretion

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: P 30


text: public

characteristic: INSDC status

text: Germany

text: Homo sapiens

text: Yes

text: Blood

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

text: Homo sapiens

text: Yes

text: swab

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: P 33


text: public

text: one year co-culture of Lausannevirus in its host A. castellanii, replicate number 1

characteristic: description

text: Lausannevirus

text: Lausannevirus

text: one year co-culture of Lausannevirus


text: public

text: one year co-culture of Lausannevirus in its host A. castellanii, replicate number 2

text: Lausannevirus

text: Lausannevirus

text: one year co-culture of Lausannevirus


text: public

text: one year co-culture of Lausannevirus in its host A. castellanii in presence of Estrella lausannensis, subculture C12

text: Lausannevirus

text: Lausannevirus

text: one year co-culture of Lausannevirus


text: public

text: one year co-culture of Lausannevirus in its host A. castellanii in presence of Estrella lausannensis, subculture E12

text: Lausannevirus

text: Lausannevirus

text: one year co-culture of Lausannevirus


text: public

text: one year co-culture of Lausannevirus in its host A. castellanii in presence of Estrella lausannensis, subculture F12

text: Lausannevirus

text: Lausannevirus

text: one year co-culture of Lausannevirus


text: public

text: one year co-culture of Lausannevirus in its host A. castellanii in presence of Estrella lausannensis, subculture H12

text: Lausannevirus

text: Lausannevirus

text: one year co-culture of Lausannevirus


text: public

characteristic: collection date

text: Germany

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

text: trachealsecretion

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: P 37


characteristic: ENA-CHECKLIST

text: public

text: Germany

text: Homo sapiens

text: Yes

characteristic: host associated

text: blood

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: P 40

characteristic: strain


Vehicle 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

text: public

text: Vehicle 1

tag: Namespace:IMPERIAL COLLEGE LONDON

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Vehicle rep 1 (pooled peritoneal macrophages n=6)


Vehicle 2

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Vehicle 2

text: house mouse

text: Mus musculus

text: Mus musculus

text: Vehicle rep 2 (pooled peritoneal macrophages n=6)


LPS_control 1

text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

text: LPS_control 1

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: LPS stimulated control rep 1 (pooled peritoneal macrophages n=6)

characteristic: title


LPS_control 2

text: IMPERIAL COLLEGE LONDON

text: public

characteristic: SRA accession

text: LPS_control 2

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus

text: LPS stimulated control rep 2 (pooled peritoneal macrophages n=6)


LPS_drug 1

text: IMPERIAL COLLEGE LONDON

text: public

text: LPS_drug 1

text: house mouse

text: Mus musculus

text: Mus musculus

text: LPS stimulated drug treated rep 1 (pooled peritoneal macrophages n=6)


LPS_drug 2

text: IMPERIAL COLLEGE LONDON

text: public

text: LPS_drug 2

text: house mouse

text: Mus musculus

text: Mus musculus

text: LPS stimulated drug treated rep 2 (pooled peritoneal macrophages n=6)


text: public

characteristic: collection date

text: Germany

characteristic: country

text: Homo sapiens

text: Yes

text: BAL

characteristic: isolation source host associated

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: P 41


characteristic: ENA-CHECKLIST

text: public

text: Germany

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: stool

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: P 42


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Germany

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: External Id

text: Hemchandracharya north gujarat university

text: public

characteristic: description

text: Extream

characteristic: environment (biome)

text: Sediment

characteristic: environment (feature)

text: Hot spring

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Acidipropionibacterium acidipropionici

text: Illumina

characteristic: project name

text: Acidipropionibacterium acidipropionici

text: sediment

characteristic: sediment environmental package

characteristic: sequencing method


characteristic: ENA-CHECKLIST

text: SVERIGES LANTBRUKSUNIVERSITET

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:SVERIGES LANTBRUKSUNIVERSITET

characteristic: Submitter Id

text: metagenome

characteristic: organism

text: metagenome

text: Water Sample from Kenya

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Research Fellow Tremethick Lab Department of Genome Sciences The John Curtin School of Medical Research The Australian National University

text: ArrayExpress

characteristic: broker name

text: MDCK

characteristic: cell line

text: Epithelial cell of kidney

characteristic: cell type

text: dog

characteristic: common name

text: Protocols: MDCK cells were maintained in DMEM growth medium supplemented with 10% Foetal Bovine Serum (FBS) For TGF-beta treatment, wildtype MDCK were stimulated in culture by adding 5ng of TGF-beta to the medium. TGF-beta was added with every passage of cells, to maintain stimulus. Nuclei were pelleted by centrifugation for 40 min at 4,000g through an 8-ml sucrose cushion (1.2 M sucrose, 60 mM KCL, 15 mM HEPES, 15 mM NaCl, 2 mM MgCl2, 1 mM EDTA, 0.5 mM EGTA, 0.5 mM DTT, 0.2 mM PMSF and protease inhibitor cocktail, pH 7.6). The supernatant was carefully removed, and pelleted nuclei were resuspended in 1 ml of micrococcal digestion buffer (50 mM Tris-HCl pH 7.6, 3 mM CaCl2) and passed five or six times through a size 29-gauge needle. The nuclear extract was digested for 35 min at 37 °C with micrococcal nuclease (New England Biolabs; 40 gel units per 330 μl of extract) to obtain ~80% mononucleosomes. After centrifugation at 10,000g for 5 min, the supernatant (S1) and the resuspended pellet (S2) were dialyzed against 10 mM Tris-HCl pH 7.6, 1 mM EDTA and 0.5 mM EGTA overnight at 4 °C. The S1 and S2 supernatants were then combined and dialyzed against 10 mM Tris-HCl pH 7.6, 1 mM EDTA, 0.5 mM EGTA, 4% (v/v) glycerol, divided into aliquots and stored at −80 °C. For ChIP, 5 ug of anti- H2A.Z antibodies were used for 150 uq of MNAse digested chromatin. Samples were then RNAse treated for 30 mins at 37 degrees followed by Proteinase K at 65 degrees for 5 hours to decrosslink and release DNA. Finally, AMPure beads were used to purify the ChIP/Input DNA. ChIP-Seq/MNase-Seq libraries were constructed using NEBnext Ultra DNA Library Prep kit for Illumina (New England Biolabs).

characteristic: description

text: Canis lupus familiaris

text: Canis lupus familiaris

text: kidney

characteristic: organism part

text: Canis lupus familiaris

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

text: Research Fellow Tremethick Lab Department of Genome Sciences The John Curtin School of Medical Research The Australian National University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: MDCK

text: Epithelial cell of kidney

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: kidney

text: Canis lupus familiaris

text: female


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: MDCK

text: Epithelial cell of kidney

text: dog

text: Protocols: MDCK cells were maintained in DMEM growth medium supplemented with 10% Foetal Bovine Serum (FBS) Nuclei were pelleted by centrifugation for 40 min at 4,000g through an 8-ml sucrose cushion (1.2 M sucrose, 60 mM KCL, 15 mM HEPES, 15 mM NaCl, 2 mM MgCl2, 1 mM EDTA, 0.5 mM EGTA, 0.5 mM DTT, 0.2 mM PMSF and protease inhibitor cocktail, pH 7.6). The supernatant was carefully removed, and pelleted nuclei were resuspended in 1 ml of micrococcal digestion buffer (50 mM Tris-HCl pH 7.6, 3 mM CaCl2) and passed five or six times through a size 29-gauge needle. The nuclear extract was digested for 35 min at 37 °C with micrococcal nuclease (New England Biolabs; 40 gel units per 330 μl of extract) to obtain ~80% mononucleosomes. After centrifugation at 10,000g for 5 min, the supernatant (S1) and the resuspended pellet (S2) were dialyzed against 10 mM Tris-HCl pH 7.6, 1 mM EDTA and 0.5 mM EGTA overnight at 4 °C. The S1 and S2 supernatants were then combined and dialyzed against 10 mM Tris-HCl pH 7.6, 1 mM EDTA, 0.5 mM EGTA, 4% (v/v) glycerol, divided into aliquots and stored at −80 °C. For ChIP, 5 ug of anti- H2A.Z antibodies were used for 150 uq of MNAse digested chromatin. Samples were then RNAse treated for 30 mins at 37 degrees followed by Proteinase K at 65 degrees for 5 hours to decrosslink and release DNA. Finally, AMPure beads were used to purify the ChIP/Input DNA. ChIP-Seq/MNase-Seq libraries were constructed using NEBnext Ultra DNA Library Prep kit for Illumina (New England Biolabs).

text: Canis lupus familiaris

text: Canis lupus familiaris

text: kidney

text: Canis lupus familiaris

text: female


text: public

characteristic: Submitter Id

text: ArrayExpress

text: MDCK

text: Epithelial cell of kidney

text: dog

text: Protocols: MDCK cells were maintained in DMEM growth medium supplemented with 10% Foetal Bovine Serum (FBS) For TGF-beta treatment, wildtype MDCK were stimulated in culture by adding 5ng of TGF-beta to the medium. TGF-beta was added with every passage of cells, to maintain stimulus. Nuclei were pelleted by centrifugation for 40 min at 4,000g through an 8-ml sucrose cushion (1.2 M sucrose, 60 mM KCL, 15 mM HEPES, 15 mM NaCl, 2 mM MgCl2, 1 mM EDTA, 0.5 mM EGTA, 0.5 mM DTT, 0.2 mM PMSF and protease inhibitor cocktail, pH 7.6). The supernatant was carefully removed, and pelleted nuclei were resuspended in 1 ml of micrococcal digestion buffer (50 mM Tris-HCl pH 7.6, 3 mM CaCl2) and passed five or six times through a size 29-gauge needle. The nuclear extract was digested for 35 min at 37 °C with micrococcal nuclease (New England Biolabs; 40 gel units per 330 μl of extract) to obtain ~80% mononucleosomes. After centrifugation at 10,000g for 5 min, the supernatant (S1) and the resuspended pellet (S2) were dialyzed against 10 mM Tris-HCl pH 7.6, 1 mM EDTA and 0.5 mM EGTA overnight at 4 °C. The S1 and S2 supernatants were then combined and dialyzed against 10 mM Tris-HCl pH 7.6, 1 mM EDTA, 0.5 mM EGTA, 4% (v/v) glycerol, divided into aliquots and stored at −80 °C. ChIP-Seq/MNase-Seq libraries were constructed using NEBnext Ultra DNA Library Prep kit for Illumina (New England Biolabs).

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: kidney

text: Canis lupus familiaris

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: MDCK

text: Epithelial cell of kidney

text: dog

text: Protocols: MDCK cells were maintained in DMEM growth medium supplemented with 10% Foetal Bovine Serum (FBS) Nuclei were pelleted by centrifugation for 40 min at 4,000g through an 8-ml sucrose cushion (1.2 M sucrose, 60 mM KCL, 15 mM HEPES, 15 mM NaCl, 2 mM MgCl2, 1 mM EDTA, 0.5 mM EGTA, 0.5 mM DTT, 0.2 mM PMSF and protease inhibitor cocktail, pH 7.6). The supernatant was carefully removed, and pelleted nuclei were resuspended in 1 ml of micrococcal digestion buffer (50 mM Tris-HCl pH 7.6, 3 mM CaCl2) and passed five or six times through a size 29-gauge needle. The nuclear extract was digested for 35 min at 37 °C with micrococcal nuclease (New England Biolabs; 40 gel units per 330 μl of extract) to obtain ~80% mononucleosomes. After centrifugation at 10,000g for 5 min, the supernatant (S1) and the resuspended pellet (S2) were dialyzed against 10 mM Tris-HCl pH 7.6, 1 mM EDTA and 0.5 mM EGTA overnight at 4 °C. The S1 and S2 supernatants were then combined and dialyzed against 10 mM Tris-HCl pH 7.6, 1 mM EDTA, 0.5 mM EGTA, 4% (v/v) glycerol, divided into aliquots and stored at −80 °C. ChIP-Seq/MNase-Seq libraries were constructed using NEBnext Ultra DNA Library Prep kit for Illumina (New England Biolabs).

text: Canis lupus familiaris

text: Canis lupus familiaris

text: kidney

text: Canis lupus familiaris

text: female


text: Streptococcus acidominimus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Streptococcus acidominimus

text: Streptococcus acidominimus

text: Streptococcus acidominimus

characteristic: subject id


text: Streptococcus alactolyticus

text: SC

text: public

text: Streptococcus alactolyticus

characteristic: common name

text: Streptococcus alactolyticus

text: Streptococcus alactolyticus


text: Streptococcus caballi

text: SC

text: public

text: Streptococcus caballi

text: Streptococcus caballi

text: Streptococcus caballi


text: Streptococcus castoreus

text: SC

text: public

text: Streptococcus castoreus

text: Streptococcus castoreus

text: Streptococcus castoreus


text: Streptococcus dentapri

text: SC

text: public

text: Streptococcus dentapri

text: Streptococcus dentapri

text: Streptococcus dentapri


text: Streptococcus dentisani

text: SC

text: public

text: Streptococcus dentisani

text: Streptococcus oralis subsp. dentisani

text: Streptococcus oralis subsp. dentisani


text: Streptococcus devriesei

text: SC

text: public

text: Streptococcus devriesei

text: Streptococcus devriesei

text: Streptococcus devriesei


text: Streptococcus didelphis

text: SC

text: public

text: Streptococcus didelphis

text: Streptococcus didelphis

text: Streptococcus didelphis


text: Streptococcus downei

text: SC

text: public

text: Streptococcus downei

text: Streptococcus downei

text: Streptococcus downei


text: Streptococcus entericus

text: SC

text: public

text: Streptococcus entericus

text: Streptococcus entericus

text: Streptococcus entericus


text: Streptococcus equinus

text: SC

text: public

text: Streptococcus equinus

text: Streptococcus equinus

text: Streptococcus equinus


text: Streptococcus ferus

text: SC

text: public

text: Streptococcus ferus

text: Streptococcus ferus

text: Streptococcus ferus


text: Streptococcus gallinaceus

text: SC

text: public

text: Streptococcus gallinaceus

text: Streptococcus gallinaceus

text: Streptococcus gallinaceus


text: Streptococcus halichoeri

text: SC

text: public

text: Streptococcus halichoeri

text: Streptococcus halichoeri

text: Streptococcus halichoeri


text: Streptococcus henryi

text: SC

text: public

text: Streptococcus henryi

text: Streptococcus henryi

text: Streptococcus henryi


text: Streptococcus hongkongensis

text: SC

text: public

text: Streptococcus hongkongensis

text: Streptococcus hongkongensis

text: Streptococcus hongkongensis


text: Streptococcus hyovaginalis

text: SC

text: public

text: Streptococcus hyovaginalis

text: Streptococcus hyovaginalis

text: Streptococcus hyovaginalis


text: Streptococcus ictaluri

text: SC

text: public

text: Streptococcus ictaluri

text: Streptococcus ictaluri

text: Streptococcus ictaluri


text: Streptococcus iniae

text: SC

text: public

text: Streptococcus iniae

text: Streptococcus iniae

text: Streptococcus iniae


text: Streptococcus lactarius

text: SC

text: public

text: Streptococcus lactarius

text: Streptococcus lactarius

text: Streptococcus lactarius


text: Streptococcus marimammalium

text: SC

text: public

text: Streptococcus marimammalium

text: Streptococcus marimammalium

text: Streptococcus marimammalium


text: Streptococcus massiliensis

text: SC

text: public

text: Streptococcus massiliensis

text: Streptococcus massiliensis

text: Streptococcus massiliensis


text: Streptococcus merionis

text: SC

text: public

text: Streptococcus merionis

text: Streptococcus merionis

text: Streptococcus merionis


text: Streptococcus minor

text: SC

text: public

text: Streptococcus minor

text: Streptococcus minor

text: Streptococcus minor


text: Streptococcus orisratti

text: SC

text: public

text: Streptococcus orisratti

text: Streptococcus orisratti

text: Streptococcus orisratti


text: Streptococcus orisuis

text: SC

text: public

text: Streptococcus orisuis

text: Streptococcus orisuis

text: Streptococcus orisuis


text: Streptococcus ovis

text: SC

text: public

text: Streptococcus ovis

text: Streptococcus ovis

text: Streptococcus ovis


text: Streptococcus parauberis

text: SC

text: public

text: Streptococcus parauberis

text: Streptococcus parauberis

text: Streptococcus parauberis


text: Streptococcus phocae

text: SC

text: public

text: Streptococcus phocae

text: Streptococcus phocae

text: Streptococcus phocae


text: Streptococcus pluranimalium

text: SC

text: public

text: Streptococcus pluranimalium

text: Streptococcus pluranimalium

text: Streptococcus pluranimalium


text: Streptococcus plurextorum

text: SC

text: public

text: Streptococcus plurextorum

text: Streptococcus plurextorum

text: Streptococcus plurextorum


text: Streptococcus porci

text: SC

text: public

text: Streptococcus porci

text: Streptococcus porci

text: Streptococcus porci


text: Streptococcus porcinus

text: SC

text: public

text: Streptococcus porcinus

text: Streptococcus porcinus

text: Streptococcus porcinus


text: Streptococcus porcorum

text: SC

text: public

text: Streptococcus porcorum

text: Streptococcus porcorum

text: Streptococcus porcorum


text: Streptococcus ratti

text: SC

text: public

text: Streptococcus ratti

text: Streptococcus ratti

text: Streptococcus ratti


text: Streptococcus rubneri

text: SC

text: public

text: Streptococcus rubneri

text: Streptococcus rubneri

text: Streptococcus rubneri


text: Streptococcus rupicaprae

text: SC

text: public

text: Streptococcus rupicaprae

text: Streptococcus rupicaprae

text: Streptococcus rupicaprae


text: Streptococcus sobrinus

text: SC

text: public

text: Streptococcus sobrinus

text: Streptococcus sobrinus

text: Streptococcus sobrinus


text: Streptococcus suis

text: SC

text: public

text: Streptococcus suis

text: Streptococcus suis

text: Streptococcus suis


text: Streptococcus thermophilus

text: SC

text: public

text: Streptococcus thermophilus

text: Streptococcus thermophilus

text: Streptococcus thermophilus


text: Streptococcus thoraltensis

text: SC

text: public

text: Streptococcus thoraltensis

text: Streptococcus thoraltensis

text: Streptococcus thoraltensis


text: Streptococcus tigurinus

text: SC

text: public

text: Streptococcus tigurinus

text: Streptococcus oralis subsp. tigurinus

text: Streptococcus oralis subsp. tigurinus


text: Streptococcus urinalis

text: SC

text: public

text: Streptococcus urinalis

text: Streptococcus urinalis

text: Streptococcus urinalis


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

tag: Namespace:HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: metagenome

text: metagenome


text: IBERS

text: public

characteristic: collection date

text: cattle

text: Rumen bacteria

characteristic: description

text: rumen bacteria

characteristic: environment (biome)

text: Liquid and solid

characteristic: environment (feature)

text: Rusitec in vitro

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: 52° 24' 58.0313

characteristic: geographic location (latitude)

text: -4° 5' 1.6742

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Bos taurus

text: ISPG

characteristic: project name

text: Bos taurus

text: Ion Torrent PGM

characteristic: sequencing method

text: Colonization of grass vs hay by rumen microbes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute of Medical Microbiology and Hospital Epidemiology

characteristic: Submitter Id

text: Reisolate of Helicobacter pylori str. BCM-300 obtained after experimental human infection

text: Helicobacter pylori

characteristic: organism

text: Helicobacter pylori

text: Genome sequence of Helicobacter pylori str. HE93/10_v1

characteristic: title


characteristic: External Id

text: IRD

text: public

text: complete genome sequence of Bradyrhizobium sp. ORS285

characteristic: description

text: Bradyrhizobium sp. ORS 285

text: Bradyrhizobium sp. ORS 285

characteristic: strain

text: Prokaryotic genome of Bradyrhizobium sp. ORS285


text: EMBL

text: public

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: biosamplemodel

characteristic: cohort

characteristic: collection date

text: gut metagenome

characteristic: common name

text: no applicable

characteristic: cultivar

text: Gut fecal

characteristic: ecotype

text: gut

characteristic: env biome

text: feces

text: canis lupus familiaris

characteristic: host

characteristic: host TissFat

characteristic: host age

text: LAB

characteristic: host breed

text: HPLC

characteristic: host diet

text: LN

characteristic: host pheno

text: M

characteristic: host sex

text: no applicable

characteristic: isolate

text: gut metagenome

characteristic: phase

text: gut metagenome

text: canine gut metagenome bacterium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MIGS/MIMS/MIMARKS.host-associated

text: gut metagenome

text: no applicable

text: Gut fecal

text: gut

text: feces

text: canis lupus familiaris

text: LAB

text: Base

text: OW

text: M

text: no applicable

text: gut metagenome

characteristic: organism

text: gut metagenome

text: canine gut metagenome bacterium

characteristic: title


text: EMBL

text: public

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: biosamplemodel

characteristic: cohort

characteristic: collection date

text: gut metagenome

characteristic: common name

text: no applicable

characteristic: cultivar

text: Gut fecal

characteristic: ecotype

text: gut

characteristic: env biome

text: feces

text: canis lupus familiaris

characteristic: host

characteristic: host TissFat

characteristic: host age

text: LAB

characteristic: host breed

text: Base

characteristic: host diet

text: LN

text: M

text: no applicable

text: gut metagenome

text: gut metagenome

text: canine gut metagenome bacterium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Durham University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Durham University

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Mice were fed constantly (Ad libitum; AL) while a second group of mice were fed 30% less from 3 months of age (Dietary restricted; DR). Liver tissues were collected from mice of all groups at 3 and 15 months of age. A group of mice from AL and DR at 12 months were moved to the opposite diet and sequenced at 15 months. Strand specific paired end libraries for RNA Seq were generated from DNAse treated total RNA using Ribozero and ScriptSeq systems (Epicentre/Illumina)

characteristic: description

text: ad libitum

characteristic: diet

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


text: Durham University

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: dietary restricted

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Durham University

text: public

text: ArrayExpress

text: house mouse

text: ad libitum for 9 months then dietary restricted

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male


text: Durham University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: dietary restricted for 9 months then ad libitum

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male


text: University of Chicago

text: public

tag: Namespace:University of Chicago

text: ArrayExpress

characteristic: broker name

text: cardiac myocyte

characteristic: cell type

text: house mouse

text: Protocols: The mice in this experiment were E11.5 control (Tnnt2-rtTA;TetO-Cre;Tbx20wt/loxP) and homozygous mutants (Tnnt2-rtTA;TetO-Cre;Tbx20loxp/loxP after induction with Doxycycline at E8.5. Hearts were harvested and dissociated using enzymatic digestion by collagenase (10mg/ml; Worthington) and dispase (10mg/mL, Invitrogen). Live Tnnt2-rtTA;TetO-Cre;R26-tdTom lineage traced cardiomyocyte cells were sorted on Influx Cell sorter (BD Biosciences) and collected in TRIZol reagent (Ambion) for RNA extraction. Cardiomyocyte specific Tbx20 conditional mutants were generated by breeding Tnnt2-rtTA;TetO-Cre;Tbx20+/loxp males with Tbx20loxP/loxP;R26tdTom/tdTom females. Cre expression was induced by providing Doxycycline (MP Biomedicals, cat# 198955; 1mg/mL) in drinking water to pregnant females from E8.5 onwards. Illumina library protocol

characteristic: description

text: embryonic day 11.5

characteristic: developmental stage

text: Tbx20 homozygous knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Black Swiss mouse strain


text: University of Chicago

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: cardiac myocyte

text: house mouse

text: embryonic day 11.5

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Black Swiss mouse strain

characteristic: strain


E-MTAB-4359_2:Sample 13

text: public

text: E-MTAB-4359_2:Sample 13

tag: Namespace:Laboratory of Molecular Medicine and Genomics Department of Medicine and Surgery University of Salerno

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: Protocols: C-TAP-ERβ and MCF7 control cells were hormone-deprived for 5 days For each assay, a total of 5 × 106 cells were fixed, lysed, sonicated and diluted as earlier described29. An aliquot of whole-cell extract was taken as input. For ERβ immunoprecipitation, chromatin samples were incubated at 4°C for 3 hours with 30µl of IgG Sepharose 6 fast Flow (GE Healthcare Bio-Science AB) properly equilibrated in a Poly-Prep chromatography columns (0.84 cm, Bio-Rad), according to the manufacturer’s instructions. For Ago2 immunoprecipitation, chromatin samples were incubated at 4°C overnight with 1µg of mouse monoclonal anti-Ago2/eIF2C2 (ab57113, Abcam) and then at 4°C for 1 hour with 40 µl of equilibrated slurry Protein A/G Plus-Agarose (sc-2003, Santa Cruz Biotechnology). As negative control of Ago2 immunoprecipitation, chromatin samples were also incubated overnight with 1 µg of mouse monoclonal anti-Flag M2 affinity purified (F1804, Sigma-Aldrich). Beads washing, elution, reverse crosslinking and DNA extraction were then performed as described29. Size distribution of each ChIP DNA sample was assessed by running a 1µl aliquot on Agilent High Sensitivity DNA chip using an Agilent Technologies 2100 Bioanalyzer (Agilent Technologies). The concentration of each DNA sample was determined by using Quant-IT DNA Assay Kit-High Sensitivity and a Qubit Fluorometer (Life Technologies). 10 ng of purified ChIP DNA were used as starting material for sequencing libraries preparation, by pooling three independent ChIP experiments. Indexed libraries were prepared with TruSeq ChIP Sample Prep Kit (Illumina Inc.).

text: breast carcinoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 13

characteristic: title


E-MTAB-4359_2:Sample 14

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Molecular Medicine and Genomics Department of Medicine and Surgery University of Salerno

characteristic: INSDC center name

text: public

text: E-MTAB-4359_2:Sample 14

text: ArrayExpress

text: human

text: breast carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 14


E-MTAB-4359_2:Sample 15

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4359_2:Sample 15

text: ArrayExpress

characteristic: broker name

text: human

text: breast carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 15


E-MTAB-4359_2:Sample 4

text: public

characteristic: SRA accession

text: E-MTAB-4359_2:Sample 4

text: ArrayExpress

text: human

characteristic: description

text: breast carcinoma

text: expression of estrogen receptor beta fused to C terminus tandem affinity purification tag

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 4


E-MTAB-4359_2:Sample 5

text: public

text: E-MTAB-4359_2:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 5


E-MTAB-4359_2:Sample 6

text: public

text: E-MTAB-4359_2:Sample 6

text: ArrayExpress

text: human

characteristic: common name

text: breast carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 6


E-MTAB-4359_2:Sample 10

text: public

text: E-MTAB-4359_2:Sample 10

text: ArrayExpress

text: human

text: breast carcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 10

characteristic: title


E-MTAB-4359_2:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4359_2:Sample 11

text: ArrayExpress

text: human

text: breast carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 11


E-MTAB-4359_2:Sample 12

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4359_2:Sample 12

text: ArrayExpress

text: human

text: breast carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 12


E-MTAB-4359_2:Sample 1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4359_2:Sample 1

text: ArrayExpress

text: human

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 1


E-MTAB-4359_2:Sample 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-4359_2:Sample 2

text: ArrayExpress

text: human

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-4359_2:Sample 3

text: public

characteristic: SRA accession

text: E-MTAB-4359_2:Sample 3

text: ArrayExpress

characteristic: broker name

text: human

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 3


E-MTAB-4359_2:Sample 16

text: public

text: E-MTAB-4359_2:Sample 16

text: ArrayExpress

text: human

characteristic: description

text: breast carcinoma

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 16


E-MTAB-4359_2:Sample 17

text: public

text: E-MTAB-4359_2:Sample 17

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

text: breast carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 17


E-MTAB-4359_2:Sample 18

text: public

text: E-MTAB-4359_2:Sample 18

text: ArrayExpress

text: human

characteristic: common name

text: breast carcinoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 18


E-MTAB-4359_2:Sample 7

text: public

text: E-MTAB-4359_2:Sample 7

text: ArrayExpress

text: human

text: breast carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 7

characteristic: title


E-MTAB-4359_2:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-4359_2:Sample 8

text: ArrayExpress

text: human

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 8


E-MTAB-4359_2:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-4359_2:Sample 9

text: ArrayExpress

text: human

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 9