characteristic: External Id

text: NEIKER TECNALIA

characteristic: INSDC center name

text: public

tag: Namespace:NEIKER TECNALIA

characteristic: collection date

text: soil metagenome

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characteristic: description

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characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: DegraSoilAmendments

text: soil metagenome

text: MiSeq

text: soil

characteristic: soil environmental package

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NEIKER TECNALIA

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil metagenome

characteristic: common name

text: Less contamination, cow slurry treatment, replicate b

text: Soil

text: Grassland

text: Soil

text: Spain

unit: m

unit: DD

text: mimarks-survey

text: soil metagenome

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characteristic: project name

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characteristic: External Id

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characteristic: INSDC center name

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text: soil metagenome

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text: Grassland

characteristic: environment (feature)

text: Soil

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characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

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text: NEIKER TECNALIA

characteristic: INSDC first public

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characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

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characteristic: project name

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text: NEIKER TECNALIA

characteristic: INSDC first public

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text: public

characteristic: INSDC status

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text: Soil

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text: Soil

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

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characteristic: SRA accession

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text: Less contamination, paper mill sludge poultry manure mixed treatment, replicate a

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characteristic: geographic location (longitude)

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characteristic: investigation type

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text: NEIKER TECNALIA

characteristic: INSDC first public

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characteristic: INSDC status

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text: Less contamination, paper mill sludge poultry manure mixed treatment, replicate c

text: Soil

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text: Soil

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

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text: soil metagenome

text: MiSeq

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characteristic: ENA-CHECKLIST

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text: NEIKER TECNALIA

characteristic: INSDC first public

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text: public

characteristic: INSDC status

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characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

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text: DegraSoilAmendments

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characteristic: INSDC center name

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text: Grassland

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characteristic: project name

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characteristic: sequencing method

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characteristic: ENA-CHECKLIST

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text: NEIKER TECNALIA

characteristic: INSDC first public

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text: Less contamination, negative control, replicate c

text: Soil

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text: Soil

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

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characteristic: External Id

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characteristic: SRA accession

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characteristic: geographic location (longitude)

text: mimarks-survey

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text: NEIKER TECNALIA

characteristic: INSDC first public

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text: public

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text: More contamination, cow slurry treatment, replicate c

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text: Soil

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

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characteristic: ENA-CHECKLIST

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text: NEIKER TECNALIA

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text: public

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characteristic: geographic location (longitude)

text: mimarks-survey

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text: soil metagenome

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text: Grassland

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text: NEIKER TECNALIA

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text: public

characteristic: INSDC status

text: soil metagenome

text: More contamination, sheep manure treatment, replicate c

text: Soil

text: Grassland

text: Soil

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

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characteristic: External Id

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text: public

characteristic: SRA accession

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text: More contamination, paper mill sludge poultry manure mixed treatment, replicate a

text: Soil

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text: Soil

text: Spain

characteristic: geographic location (longitude)

text: mimarks-survey

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text: NEIKER TECNALIA

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text: public

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text: More contamination, paper mill sludge poultry manure mixed treatment, replicate b

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text: Soil

characteristic: environment (biome)

text: Grassland

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text: Soil

text: Spain

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text: public

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text: More contamination, paper mill sludge poultry manure mixed treatment, replicate c

text: Soil

text: Grassland

text: Soil

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: soil metagenome

text: DegraSoilAmendments

text: soil metagenome

text: MiSeq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NEIKER TECNALIA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: soil metagenome

text: More contamination, negative control, replicate a

text: Soil

text: Grassland

text: Soil

text: Spain

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: DegraSoilAmendments

text: soil metagenome

text: MiSeq

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: External Id

text: NEIKER TECNALIA

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil metagenome

characteristic: common name

text: More contamination, negative control, replicate b

characteristic: description

text: Soil

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Soil

text: Spain

text: mimarks-survey

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text: DegraSoilAmendments

characteristic: project name

text: soil metagenome

text: MiSeq

characteristic: sequencing method

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NEIKER TECNALIA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: soil metagenome

text: More contamination, negative control, replicate c

text: Soil

text: Grassland

text: Soil

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: soil metagenome

text: DegraSoilAmendments

text: soil metagenome

text: MiSeq

text: soil


characteristic: External Id

text: SMU

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

characteristic: organism

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)

characteristic: title

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SMU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: feces metagenome

text: feces metagenome


characteristic: External Id

text: WELLCOME TRUST SANGER INSTITUTE

characteristic: INSDC center name

text: public

tag: Namespace:WELLCOME TRUST SANGER INSTITUTE

text: Adult

characteristic: dev stage

text: Onchocerca volvulus

text: Onchocerca volvulus

text: Female

characteristic: sex

text: Pool of adult female worms, phenotypically characterised as sub-optimal responders to ivermectin


text: WELLCOME TRUST SANGER INSTITUTE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: Onchocerca volvulus

text: Onchocerca volvulus

text: Female

text: Pool of adult female worms, phenotypically characterised as good responders to ivermectin


text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: Adult

text: Onchocerca volvulus

text: Onchocerca volvulus

text: Female

text: Pool of adult female worms, characterised as naive or little treated (NLT) with ivermectin


text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Neisseria bergeri

characteristic: ArrayExpress-Species

text: SC

text: public

text: Neisseria bergeri

characteristic: common name

text: Neisseria bergeri

text: Neisseria bergeri


A10 (new)

text: UNIVERSITY OF CAMBRIDGE

text: public

text: A10 (new)

tag: Namespace:UNIVERSITY OF CAMBRIDGE

characteristic: collection date

text: Boreal

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: Sediment

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater sediment metagenome

characteristic: organism

text: Illumina

characteristic: project name

text: freshwater sediment metagenome

text: sediment

characteristic: sediment environmental package

characteristic: sequencing method

text: Daisy Lake Shotgun


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WEIZMANN INSTITUTE OF SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WEIZMANN INSTITUTE OF SCIENCE

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus

text: metagenomics

characteristic: title


text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: collection date

text: Boreal

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: Sediment

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: freshwater sediment metagenome

text: Daisy Lake Shotgun

text: freshwater sediment metagenome

text: sediment

text: Illumina

text: Daisy Lake Shotgun


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSITY

text: public

tag: Namespace:WAGENINGEN UNIVERSITY

text: bovine rumen fluid sample

characteristic: description

text: metagenome

characteristic: organism

text: metagenome

text: bacterial or archaeal 16S rRNA


text: CEBITEC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Improved genome sequence of Actinoplanes sp. SE50/110

text: soil

text: soil

text: soil

text: Germany

text: mimarks-survey

characteristic: investigation type

text: Actinoplanes sp. SE50/110

characteristic: project name

text: Actinoplanes sp. SE50/110

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: LIV

text: public

text: Clone picked from experimental evolution

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:UNIVERSITY OF THE BASQUE COUNTRY (UPV/EHU)

text: tench

characteristic: common name

text: Pool of five Tinca tinca specimens from the western population

text: Tinca tinca

text: Tinca tinca

text: Tinca tinca western pool


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF THE BASQUE COUNTRY (UPV/EHU)

text: public

text: tench

text: Pool of five Tinca tinca specimens from the easter population

characteristic: description

text: Tinca tinca

text: Tinca tinca

text: Tinca tinca eastern pool


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: tench

text: RNA Sequencing of Tinca tinca

text: Tinca tinca

characteristic: organism

text: Tinca tinca


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:The Westmead Institute for Medical Research and Marie Bashir Institute for Infectious Diseases and Biosecurity

characteristic: collection date

text: Plasmid harbours several MDR genes including ESBLs NDM-1 and CTX-M-15

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: UPEC

characteristic: isolate

text: urine

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

text: MDR UPEC RIYADH Plasmid sample 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Westmead Institute for Medical Research and Marie Bashir Institute for Infectious Diseases and Biosecurity

text: public

characteristic: Submitter Id

text: Plasmid harbours several MDR genes including ESBLs NDM-1, CTX-M-15 and OXA-9

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: UPEC

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: MDR UPEC RIYADH Plasmid sample 2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Plasmid harbours several MDR genes including ESBLs CTX-M-15, OXA-1 and OXA-181

characteristic: description

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: UPEC

text: urine

text: Escherichia coli

text: Escherichia coli

text: MDR UPEC RIYADH Plasmid sample 3


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: UPEC

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: MDR UPEC RIYADH Plasmid sample 4


text: public

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: UPEC

characteristic: isolate

text: urine

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: MDR UPEC RIYADH Plasmid sample 5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: Submitter Id

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: UPEC

text: urine

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

text: MDR UPEC RIYADH Plasmid sample 6


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Plasmid harbours several MDR genes including ESBLs NDM-5, CMY-42

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: UPEC

text: urine

text: Escherichia coli

text: Escherichia coli

text: MDR UPEC RIYADH Plasmid sample 7

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

characteristic: description

text: Saudi Arabia

text: diseased

text: Homo sapiens

text: UPEC

text: urine

text: Escherichia coli

text: Escherichia coli

text: MDR UPEC RIYADH Plasmid sample 8


text: public

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: UPEC

characteristic: isolate

text: urine

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: MDR UPEC RIYADH Plasmid sample 10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SMU

text: public

characteristic: Submitter Id

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


text: Salmonella enterica subsp. enterica serovar Typhi

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY

text: public

tag: Namespace:UPPSALA UNIVERSITY

characteristic: collection date

unit: mS/cm

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

unit: ºC

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


ND-P-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ND-P-A

characteristic: Submitter Id

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


ND-P-B

text: UPPSALA UNIVERSITY

text: public

text: ND-P-B

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


ND-P-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ND-P-C

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


ND-M-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ND-M-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


ND-M-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ND-M-B

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


ND-M-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ND-M-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


ND-T-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ND-T-A

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


ND-T-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ND-T-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


ND-T-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ND-T-C

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


END-P-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: END-P-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


END-P-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: END-P-B

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


END-P-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: END-P-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


END-M-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: END-M-A

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


END-M-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: END-M-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


END-M-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: END-M-C

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


END-T-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: END-T-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


END-T-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: END-T-B

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


END-T-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: END-T-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


ELD-P-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELD-P-A

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


ELD-P-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELD-P-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


ELD-P-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELD-P-C

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


ELD-M-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELD-M-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


ELD-M-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELD-M-B

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


ELD-M-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELD-M-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


ELD-T-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELD-T-A

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


ELD-T-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELD-T-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


ELD-T-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELD-T-C

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


EHD-P-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EHD-P-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


EHD-P-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EHD-P-B

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


EHD-P-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EHD-P-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


EHD-M-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EHD-M-A

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


EHD-M-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EHD-M-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


EHD-M-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EHD-M-C

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


EHD-T-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EHD-T-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


EHD-T-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EHD-T-B

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


EHD-T-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EHD-T-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


LND-P-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LND-P-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LND-P-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LND-P-B

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


LND-P-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LND-P-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


LND-M-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LND-M-A

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LND-M-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LND-M-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

text: water

characteristic: water environmental package


LND-M-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LND-M-C

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

characteristic: title

text: water


LND-T-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LND-T-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


LND-T-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LND-T-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

characteristic: title

text: water

characteristic: water environmental package


LND-T-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: LND-T-C

text: freshwater

text: rock pool

text: water

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LLD-P-A

text: UPPSALA UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LLD-P-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LLD-P-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LLD-P-B

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

characteristic: title

text: water

characteristic: water environmental package


LLD-P-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LLD-P-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

text: water

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LLD-M-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LLD-M-A

text: freshwater

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LLD-M-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LLD-M-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

characteristic: title

text: water

characteristic: water environmental package


LLD-M-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LLD-M-C

text: freshwater

characteristic: environment (biome)

text: rock pool

text: water

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LLD-T-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LLD-T-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LLD-T-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LLD-T-B

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

characteristic: title

text: water

characteristic: water environmental package


LLD-T-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LLD-T-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

text: water

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LHD-P-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LHD-P-A

text: freshwater

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LHD-P-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LHD-P-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

characteristic: title

text: water

characteristic: water environmental package


LHD-P-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LHD-P-C

text: freshwater

characteristic: environment (biome)

text: rock pool

text: water

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LHD-M-A

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LHD-M-A

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LHD-M-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LHD-M-B

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

characteristic: title

text: water

characteristic: water environmental package


LHD-M-C

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LHD-M-C

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

characteristic: environment (biome)

text: rock pool

text: water

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LHD-T-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LHD-T-A

text: freshwater

text: rock pool

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: uncultured bacterium

characteristic: ph

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


LHD-T-B

text: UPPSALA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LHD-T-B

characteristic: Submitter Id

characteristic: collection date

characteristic: conductivity

text: freshwater

text: rock pool

text: water

text: Sweden

text: mimarks-survey

text: uncultured bacterium

text: drying-rewetting cycle

characteristic: project name

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

characteristic: temperature

text: rock pool bacterial community

characteristic: title

text: water

characteristic: water environmental package


LHD-T-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LHD-T-C

text: freshwater

characteristic: environment (biome)

text: rock pool

text: water

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: drying-rewetting cycle

text: uncultured bacterium

text: pyrosequencing

text: rock pool bacterial community

text: water


text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WDRC KAUST

characteristic: Submitter Id

text: Yanghui Xiong

characteristic: collected by

characteristic: collection date

characteristic: common name

text: Sludge

text: Anaerobic digester

characteristic: environment (feature)

text: Wastewater

characteristic: environment (material)

text: wastewater/sludge

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: anaerobic sludge

characteristic: host scientific name

text: metagenome

text: No

characteristic: is the sequenced pathogen host associated?

text: non

characteristic: isolate

text: metagenome

text: Anaerobic digestion_Tetracycline hydrochloric acid

text: metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yanghui Xiong

text: Sludge

characteristic: environment (biome)

text: Anaerobic digester

text: Wastewater

text: wastewater/sludge

text: Yes

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: anaerobic sludge

text: metagenome

characteristic: investigation type

text: No

text: Non

text: metagenome

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title


text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Yanghui Xiong

characteristic: collected by

characteristic: collection date

characteristic: common name

text: Sludge

text: Anaerobic digester

characteristic: environment (feature)

text: Wastewater

characteristic: environment (material)

text: wastewater/sludge

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: Anaerobic sludge

text: metagenome

text: No

text: non

text: metagenome

characteristic: organism

text: metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Yanghui Xiong

text: Sludge

characteristic: environment (biome)

text: Anaerobic digester

text: Wastewater

text: wastewater/sludge

text: Yes

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Anaerobic sludge

characteristic: host scientific name

text: metagenome

characteristic: investigation type

text: No

characteristic: is the sequenced pathogen host associated?

text: Non

characteristic: isolate

text: metagenome

text: metagenome

text: Illumina MiSeq


text: SMU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: podocyte

characteristic: cell type

text: human

text: Protocols: Human wild type podocytes are a conditionally immortalized human podocyte cell line developed by transfection with the temperature-sensitive SV40-T gene, which proliferate at 33oC, but at 37oC enter growth arrest and express markers of differentiated in vivo podocytes.1 Obtained from M. Saleem, University of Bristol, UK. Twenty 15cm-diameter culture dishes of confluent wild-type human podocytes, approximating to 3x107 cells, were used for each treatment condition. Twenty four hours prior to harvest, cell culture medium containing standard 10% fetal bovine serum (FBS) was exchanged with cell culture medium containing 10% charcoal-stripped FBS (Gibco™) to prevent endogenous Gc activating GR. One hour prior to harvesting, cells were treated with either 1µM prednisolone dissolved in methanol or an equal volume (0.001% v/v of media) of methanol alone as a vehicle control. Following treatment, cells were cross-linked in 0.1% (v/v) 11% formaldehyde solution for 10 minutes at room temperature, followed by quenching of the cross-linking reaction using 0.05% (v/v) 2.5 M glycine. Each plate was then washed twice with 1 x phosphate-buffered saline (PBS), before cells were harvested using a cell scraper. Cells were pooled into a 50mL conical tube (separate tubes for Gc-treated and vehicle-treated samples) and centrifuged at 700xg for 5 minutes at 4oC. The supernatant was discarded and the cell pellet was resuspended in 10mL PBS. Tubes were centrifuged at 700xg for 5 minutes at 4oC and the supernatant was discarded. Samples were flash-frozen in liquid nitrogen and stored at -80oC. 2µL of proteinase K (10µg/µL) was added to the 100µL solution before a 30 minute incubation at 55oC. The cross-links were then reversed with a 2 hour incubation at 80oC. 500µL DNA purification binding buffer was added and the pH was adjusted to ensure pH<7.5 using 5µL aliquots of 3M sodium acetate. The sample was then added to the DNA purification column before centrifugation at 14,000 rpm for 1 minute, and the flow through was discarded. 750µL DNA purification wash buffer was added prior to another 14,000 rpm centrifugation for 1 minute. The column was dried with a 2 minute 14,000 centrifugation before transfer to a new 1.5mL tube. Warm purification elution buffer was added to the column before a 1 minute incubation at room temperature, followed by collection of purified ChIP DNA by centrifugation at 14,000rpm for 1 minute. Prior to sample sequencing, real-time polymerase chain reaction (qPCR) was performed to ensure enrichment of the +Gc samples over vehicle-treated samples for a known GR-binding site (GBS) (FKBP5+86). Quantification of the concentration of DNA was performed using the Qubit™ fluorometer. Samples were processed using reagents from the ChIP-IT® High Sensitivity kit (Active Motif). Cell pellets from -80oC were resuspended in 5mL Chromatin Prep Buffer supplemented with 5µL of protease inhibitor cocktail (PIC) and 5µL 100nM phenylmethylsulfonyl fluoride (PMSF) at room temperature. Samples were homogenized using a Qiagen TissueRuptor® (power setting ‘4’ for 45 seconds), before a 5 minute incubation on ice. Samples then underwent 90 stokes with a chilled Dounce homogeniser, before transfer to a 15 mL tube, which was centrifuged at 1250xg for 3 minutes at 4oC. The supernatant was discarded and the pellet was resuspended in 500µL ChIP Buffer supplemented with 5µL PIC and 5µL 100nM PMSF. Following a 10 minute incubation on ice, samples were sonicated using an Active Motif EpiShear® probe sonicator in combination with an EpiShear cooled sonication platform (35% power; 45 cycles- each cycle consisted of 30 seconds of sonication followed by 30 seconds of inactivity). Samples were then centrifuged at 4oC at maximum speed for 2 minutes to pellet the cellular debris. 100µL from the vehicle treated sample (for ‘input’ DNA) and 100µL from the +Gc sample were removed at this point to confirm that sonication produced appropriately sized DNA fragments. The remaining samples were stored in aliquots at -80oC. 100µL Tris-EDTA (TE) buffer, pH 8.0 and 2µL RNAase A (10ug/µL) were added to the 100µL chromatin samples before a 1 hour incubation at 37oC. 5µL proteinase K (10µg/µL) was then added before a 3 hour incubation at 37oC. The samples then underwent a 16 hour incubation at 65oC with 10µL 5M NaCl. DNA from the 100µL samples was purified using the Macherey-Nagel Nucleospin® kit. 1mL NTB was added to the sheared chromatin, and samples were spun through purification columns for 30 seconds at 11,000xg, and the flow-through was discarded. 700µL NT3 was then added to the columns before centrifugation for 30 seconds at 11,000xg, and the flow-through was discarded. The step involving NT3 was performed twice, before the column was dried by 11,000xg spin for 1 minute. The column was then inserted into a new holding 1.5mL tube and 20µL NE buffer was added before a 1 minute incubation at room temperature. The column was centrifuged at 11,000xg for 1 minute. 18µL of the sample was placed into a PCR tube with 2µL 5M NaCl before a 20 minute incubation at 100oC, and the sonication efficiency was checked by running the sample on a 1.5% agarose gel (100 volts, 60 minutes). The chromatin aliquots stored at -80oC were thawed on ice, and spun at maximum speed at 4oC for 2 minutes. Overnight incubation at 4oC on an end-to-end rotator was performed with the following components: 205µL chromatin, 5µL blocker, 2µg Proteintech™ anti-human GR antibody (24050-1-AP) with 2µg of Sigma® anti- human GR antibody (HPA004248), and 5µL PIC (total volume 240µL). 30µL protein G agarose beads per reaction were washed twice in 30µL TE buffer. The chromatin/antibody mixture was centrifuged at 1250xg for 1 minute and 30µL protein G agarose beads were added for a 3 hour period at 4oC on an end to end rotator. ChIP reactions were centrifuged at 1250xg for 1 minute before 600µL ChIP buffer was added, and the mixture was transferred to a ChIP filtration column. The column was washed five times with 900µL AM1 wash buffer. The column was transferred to a 1.5mL tube before centrifugation for 3 minutes at 1250xg. Following transfer to a new 1.5mL tube, warm AM4 elution buffer was added to the column before centrifugation at 1250xg for 3 minutes. Following Chromatin-immunoprecipitation (ChIP), DNA libraries were constructed according to the TruSeq® ChIP Sample Preparation Guide (Illumina). Briefly, sample DNA (5-10 ng) was blunt-ended and phosphorylated, and a single 'A' nucleotide added to the 3' ends of the fragments in preparation for ligation to an adapter with a single-base 'T' overhang. The ligation products were then purified and PCR-amplified to enrich for fragments with adapters on both ends.

characteristic: description

text: immortalization

characteristic: genetic modification

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: Input


text: UOM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: podocyte

text: human

characteristic: common name

text: immortalization

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: IP


characteristic: ENA-CHECKLIST

text: Univeristy of Tartu

text: public

tag: Namespace:Univeristy of Tartu

characteristic: collection date

text: depth in cm and replicate

text: paleome

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Latvia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title


text: synthetic construct

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: synthetic construct

text: synthetic construct

characteristic: organism

text: synthetic construct


characteristic: ENA-CHECKLIST

text: Technische Universitat Munchen - WZW

text: public

tag: Namespace:Technische Universitat Munchen - WZW

text: This study describes the genome sequence and subsequent annotation of Hanseniaspora guilliermondii UTAD222, a strain that belongs to a wider yeast culture collection and that showed interesting properties to be used in mixed-culture fermentations with S. cerevisiae given its interesting traits, such as the ability to resist to relatively high ethanol concentrations, low production of H2S, high proteolytic and β-glycosidase activity.

characteristic: description

text: Hanseniaspora guilliermondii

text: Hanseniaspora guilliermondii

characteristic: strain

text: Sequencing and comparative genomics of Hanseniaspora guilliermondii UTAD222


text: EMBL

text: public

characteristic: collection date

text: Human

characteristic: common name

text: Stool sample

text: Stool sample

characteristic: environment (biome)

text: Stool sample

characteristic: environment (feature)

text: Microbial DNA

characteristic: environment (material)

text: Kazakhstan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Global subspecies distribution

characteristic: project name

text: Homo sapiens

text: Illumina


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Human

text: Stool sample

text: Stool sample

text: Stool sample

text: Microbial DNA

text: Germany

text: human-gut

text: metagenome

text: Homo sapiens

text: Global subspecies distribution

text: Homo sapiens

text: Illumina

characteristic: sequencing method

characteristic: title


Sample from Branchiostoma belcheri

characteristic: ENA-CHECKLIST

text: SYSU

text: public

text: Sample from Branchiostoma belcheri

characteristic: Submitter Id

text: sperm cells

characteristic: cell type

characteristic: collection date

text: Belcher's lancelet

characteristic: common name

text: adult

characteristic: dev stage

text: China

text: Xiamen Bay

characteristic: geographic location (region and locality)

characteristic: isolate

text: seawater

characteristic: isolation source

text: Branchiostoma belcheri

characteristic: organism

text: Branchiostoma belcheri

text: male

characteristic: sex

text: gonad

characteristic: tissue type

text: Sample from Branchiostoma belcheri


BCK

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IVF-CAAS-China

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BCK

text: Bemisia tabaci

text: Bemisia tabaci

text: BCK


characteristic: ENA-CHECKLIST

text: IVF-CAAS-China

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Bemisia tabaci

text: Bemisia tabaci

characteristic: title


QCK

text: IVF-CAAS-China

text: public

text: QCK

text: Bemisia tabaci

text: Bemisia tabaci

text: QCK


text: Chengdu Institute of Biology, CAS

text: public

tag: Namespace:Chengdu Institute of Biology, CAS

characteristic: collection date

text: soil

characteristic: environment (biome)

characteristic: environment (feature)

text: peat

characteristic: environment (material)

text: soil-associated

characteristic: environmental package

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FUDAN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:FUDAN UNIVERSITY

text: China

text: diseased

characteristic: host health state

text: human

characteristic: host scientific name

text: mycobacterium tuberculosis

characteristic: isolate

text: sputum sample

characteristic: isolation source

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Single colony sequencing


Butyricicoccus pullicaecorum_25.3(T)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Butyricicoccus pullicaecorum_25.3(T)

tag: Namespace:Ghent University-Faculty of Veterinary medicine

characteristic: Submitter Id

text: Dr. Venessa Eeckhaut Department of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University

characteristic: collected by

text: Belgium

characteristic: geographic location (country and/or sea)

text: Salisburylaan 133, Merelbeke 9820

characteristic: geographic location (region and locality)

text: Gallus gallus

text: Dr. Venessa Eeckhaut

characteristic: identified by

text: chicken intestinal content

text: Butyricicoccus pullicaecorum

text: Butyricicoccus pullicaecorum

text: DNA extracted from Butyricicoccus pullicaecorum_25.3(T)

characteristic: title


Pixian pea sauce1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Xianghuiping

text: public

text: Pixian pea sauce1

characteristic: collection date

text: Through high-throughput sequencing to understand the microbial community structure and abundance of Pixian bean sauce, understand the main functional strains, to provide theoretical guidance for the process optimization of Pixian bean sauce.

characteristic: description

text: food

characteristic: environment (biome)

text: fermentation

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Hyphochytrium catenoides

text: High Genetic Diversity and Novelty in Pixian pea sauce

characteristic: project name

text: Hyphochytrium catenoides

text: Illumina MiSeq 2500

characteristic: sequencing method


text: JEJU NATIONAL UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:JEJU NATIONAL UNIVERSITY

characteristic: Submitter Id

text: No

characteristic: environmental sample

text: Dalseong, Daegu Metropolitan City, Republic of Korea

characteristic: geographic location (region and locality)

text: SJ Park

characteristic: identified by

text: contaminated soil

characteristic: isolation source

text: Herminiimonas sp. AS8

characteristic: organism

text: Herminiimonas sp. AS8

characteristic: strain

text: Physiological and genomics features of a novel acidophilic arsenite-oxidizing bacterial strain AS8 belong to the genus Herminiimonas


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-MIG

text: public

text: Complete genome sequence of F. psychrophilum strain OSU THCO2-90 strain isolated by M. Whipple and R. A. Holt (Oregon State University) from the kidney of a Coho salmon (Oncorhynchus kisutch) in Oregon in 1990

characteristic: description

text: Flavobacterium psychrophilum

text: Flavobacterium psychrophilum

text: OSU THCO2-90

text: Complete Genome Sequence of Flavobacterium psychrophilum Strain OSU THCO2-90

characteristic: title


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: Cloned unidentified DNA sequence from the PCR product of a pottery swab sample, Northern Ghana.

text: unidentified

text: unidentified


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sequences from 454 pyrosequencing of an environmental swab sample, Northern Ghana. Raw data, adapter sequence (ACTACGTCTCT) not clipped.

text: unidentified

text: unidentified


text: KAUST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Plasmodium yoelii yoelii

text: Plasmodium yoelii yoelii

text: Genomic DNA from Plasmodium yoeli crosses and parental strains


text: GSC

text: public

text: sessile oak

characteristic: common name

text: Quercus petraea

text: Quercus petraea


text: UPSC

text: public

text: Norway spruce

text: Voucher 19540267 The Arboretum at Horsholm; cultivated from germplasm collected at 43N 20E

text: Picea abies

text: Picea abies

text: Picea abies cultivated at The Arboretum at Horsholm University of Copenhagen Denmark; Voucher 19540267


text: UPSC

text: public

text: Norway spruce

text: Voucher 19830406 The Arboretum at Horsholm; cultivated from germplasm collected at 60N 7E

text: Picea abies

text: Picea abies

text: Picea abies cultivated at The Arboretum at Horsholm University of Copenhagen Denmark; Voucher 19830406


text: ABERSYTWYTH UNIVERSITY

text: public

tag: Namespace:ABERSYTWYTH UNIVERSITY

characteristic: collection date

text: soil

characteristic: environment (biome)

text: subsurface

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: subsurface metagenome

text: Geosequestration Experiment Metagenomes

characteristic: project name

text: subsurface metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Geosequestration Experiment Metagenomes


E-MTAB-5236:Sample 1

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5236:Sample 1

tag: Namespace:College of Life Sciences, Shandong Agricultural University

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Three biological repeats of the wild type (Col-0-A, Col-0-B and Col-0-C) and the mutant dcc1 (dcc1-A, dcc1-B and dcc1-C) after culture on shoot-induction medium for 16 days were used for RNA sequencing. Total RNAs were isolated from the calli of wild type Col-0 and the mutant dcc1 with TRI reagent (Sigma, catalog number T9424). The mRNA was enriched by Ribo-ZeroTM Magnetic Kit (Epicentre), and fragmented into short fragments using fragmentation buffer and reverse transcripted into cDNA with random primers. Second-strand cDNA were synthesized by DNA polymerase I. Then the cDNA fragments were purified with QiaQuick PCR extraction kit, end repaired, poly(A) added, and ligated to Illumina sequencing adapters. The ligation products were size selected by agarose gel electrophoresis, and amplified by PCR to construct the RNA-seq llibraries.

characteristic: description

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: cultured on shoot-induction medium

characteristic: growth condition

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: plant callus

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 1

characteristic: title


E-MTAB-5236:Sample 2

characteristic: ENA-CHECKLIST

text: College of Life Sciences, Shandong Agricultural University

text: public

characteristic: SRA accession

text: E-MTAB-5236:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: wild type genotype

text: cultured on shoot-induction medium

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: plant callus

text: Arabidopsis thaliana

text: Sample 2


E-MTAB-5236:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5236:Sample 3

text: ArrayExpress

text: thale cress

text: wild type genotype

text: cultured on shoot-induction medium

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: plant callus

text: Arabidopsis thaliana

text: Sample 3


E-MTAB-5236:Sample 4

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5236:Sample 4

characteristic: age

text: ArrayExpress

text: thale cress

text: gene knock out

characteristic: genetic modification

text: DCC1 mutant

text: cultured on shoot-induction medium

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: plant callus

text: Arabidopsis thaliana

text: Sample 4