E-MTAB-5661:Sample 50

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 50

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 50


E-MTAB-5661:Sample 51

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 51

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Ring1A/B double knockout cells with constitutive Ring1A knockout and tamoxifen-inducible conditional Ring1B knockout were cultured on mitomycin-inactivated feeders in DMEM (lacking pyruvate; Gibco), supplemented with 10% batch-tested FCS (Labtech), 50mM ß-mercaptoethanol, L-glutamine (Gibco), Sodium Pyruvate (Gibco), Non-essential amino acids (Gibco), Penicillin/Streptomycin (Gibco) supplemented with 1000U per ml LIF (Milipore). These cell lines have been tested and were found to have no mycoplasma contamination. Feeders in Ring1AB dKO mES cells (untreated and tamoxifen-treated) are depleted using Feeder removal MicroBeads (Miltenyi Biotec). To induce Ring1b knockout, cells are cultured in media containing 800nM 4-hydroxytamoxifen (Sigma) for 48 hours and confirmed using genomic DNA isolation and PCR across Cre-excised region. OS25 cells were captured by loading the cell suspension on 10-17 micron C1 Single-Cell Auto Prep IFC, Fluidigm (without ERCC spike-ins). Ring1A knockout (untreated) and Ring1A/B double knockout cells are processed on C1 Single Cell Auto Prep System (Fluidigm; 100-7000 and 100-6209) using medium sized C1 mRNA-Seq chips (10-17 μm; 100-5670) with ERCC spike-ins (Ambion; AM1780) following the manufacturers protocol (100-5950 B1) requiring SMARTer kit for Illumina Sequencing (Clonetech; 634936). Single cell libraries were prepared using Illumina Nextera XT DNA sample preparation kit (Illumina; FC-131-1096) after cleanup and pooling using AMPure XP beads (Agencourt Biosciences; A63880).

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 51

characteristic: title

type: has member


E-MTAB-5661:Sample 52

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 52

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 52


E-MTAB-5661:Sample 53

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 53

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 53


E-MTAB-5661:Sample 54

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 54

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 54


E-MTAB-5661:Sample 55

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 55

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 55

characteristic: title


E-MTAB-5661:Sample 56

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 56

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 56


E-MTAB-5661:Sample 57

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 57

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 57


E-MTAB-5661:Sample 58

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 58

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 58


E-MTAB-5661:Sample 59

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 59

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 59

characteristic: title


E-MTAB-5661:Sample 6

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 6


E-MTAB-5661:Sample 60

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 60

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 60


E-MTAB-5661:Sample 61

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 61

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 61


E-MTAB-5661:Sample 62

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 62

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 62

characteristic: title


E-MTAB-5661:Sample 63

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 63

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 63


E-MTAB-5661:Sample 64

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 64

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 64


E-MTAB-5661:Sample 65

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 65

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 65


E-MTAB-5661:Sample 66

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 66

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 66

characteristic: title


E-MTAB-5661:Sample 67

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 67

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 67


E-MTAB-5661:Sample 68

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 68

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 68


E-MTAB-5661:Sample 69

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 69

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 69


E-MTAB-5661:Sample 7

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 7

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 7

characteristic: title


E-MTAB-5661:Sample 70

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 70

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 70


E-MTAB-5661:Sample 71

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 71

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 71


E-MTAB-5661:Sample 72

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 72

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 72


E-MTAB-5661:Sample 73

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 73

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 73

characteristic: title


E-MTAB-5661:Sample 74

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 74

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 74


E-MTAB-5661:Sample 75

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 75

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 75


E-MTAB-5661:Sample 76

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 76

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 76


E-MTAB-5661:Sample 77

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 77

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 77

characteristic: title


E-MTAB-5661:Sample 78

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 78

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 78


E-MTAB-5661:Sample 79

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 79

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 79


E-MTAB-5661:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 8

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 8


E-MTAB-5661:Sample 80

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 80

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 80

characteristic: title


E-MTAB-5661:Sample 81

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 81

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 81


E-MTAB-5661:Sample 82

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 82

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 82


E-MTAB-5661:Sample 83

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 83

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 83


E-MTAB-5661:Sample 84

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 84

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 84

characteristic: title


E-MTAB-5661:Sample 85

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 85

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 85


E-MTAB-5661:Sample 86

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 86

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 86


E-MTAB-5661:Sample 87

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 87

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 87


E-MTAB-5661:Sample 88

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 88

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 88

characteristic: title


E-MTAB-5661:Sample 89

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 89

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 89


E-MTAB-5661:Sample 9

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 9

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 9


E-MTAB-5661:Sample 90

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 90

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 90


E-MTAB-5661:Sample 91

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 91

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 91

characteristic: title


E-MTAB-5661:Sample 92

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 92

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 92


E-MTAB-5661:Sample 93

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 93

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 93


E-MTAB-5661:Sample 94

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-5661:Sample 94

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: serum + LIF under Oct4 selection

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 94


E-MTAB-5661:Sample 95

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5661:Sample 95

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: strain

text: Sample 95

characteristic: title


E-MTAB-5661:Sample 96

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5661:Sample 96

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: wild type genotype

text: serum + LIF under Oct4 selection

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus

text: Sample 96


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF WARWICK

text: public

tag: Namespace:UNIVERSITY OF WARWICK

text: Draft genome sequence of bacteriophage swan01

text: Ornamental Pond

characteristic: isolation source

text: Escherichia coli

characteristic: lab host

text: Escherichia phage vB_Eco_swan01

text: Escherichia phage vB_Eco_swan01


text: LUDWIG-MAXIMILIANS-UNIVERSITAET MUENCHEN

text: public

text: S2 cell

characteristic: cell type

text: fruit fly

characteristic: common name

text: small RNA sequencing from Act5C-GFP clone D10

characteristic: description

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: S2 cell

text: fruit fly

text: small RNA sequencing from Act5C-GFP clone E9

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Act5C-GFP E9


text: public

text: S2 cell

text: fruit fly

text: small RNA sequencing from Act5C-GFP stable cells (population, not clonal)

text: Drosophila melanogaster

text: Drosophila melanogaster

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: S2 cell

text: fruit fly

text: small RNA sequencing from Act5C-GFP marker-free tagging, clone A12

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: ENA-LAST-UPDATE

text: public

text: S2 cell

text: fruit fly

text: small RNA sequencing from Act5C-GFP marker-free, clone A7

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: INSDC last update

text: public

text: S2 cell

text: fruit fly

text: small RNA sequencing from Act5C-GFP, clone D10-2

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

characteristic: INSDC status

text: S2 cell

text: fruit fly

text: small RNA sequencing from Act5C-GFP, clone E9-5

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

characteristic: SRA accession

text: S2 cell

text: fruit fly

text: small RNA sequencing from cells transfected with only the HR donor PCR product (i.e. no cut in genome), RNA isolated 2 days after transfection

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

characteristic: Submitter Id

text: S2 cell

text: fruit fly

text: small RNA sequencing from cells transfected with only the HR donor PCR product (i.e. no cut in genome), RNA isolated 6 days after transfection

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: ENA-CHECKLIST

text: public

text: S2 cell

text: fruit fly

text: small RNA sequencing from Rtf1-GFP clone E6

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: External Id

text: public

text: S2 cell

text: fruit fly

text: small RNA sequencing from Rtf1-GFP clone E7

text: Drosophila melanogaster

text: Drosophila melanogaster


text: public

text: S2 cell

text: fruit fly

text: small RNA sequencing from Rtf1-GFP stable cells (population, not clonal)

text: Drosophila melanogaster

text: Drosophila melanogaster


text: UCSDMI

text: public

text: years

characteristic: age unit

characteristic: anonymized name

text: computer mouse

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: surface

characteristic: env feature

text: built environment

characteristic: env package

text: dust

text: USA:CO:Boulder

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: UCSDMI

text: FALSE

characteristic: project name

text: TRUE

characteristic: public

text: computer mouse

characteristic: sample type

text: indoor metagenome

text: Forensic identification using skin bacterial communities - hand, mouse


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: years

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin of palmar area of hand

characteristic: body site

text: right palm

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: USA:CO:Boulder

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: right palm

text: human skin metagenome

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: Submitter Id

text: Missing: Not provided

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of palmar area of hand

text: right palm

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: USA:CO:Boulder

characteristic: geo loc name

text: human

text: Homo sapiens

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

characteristic: project name

text: TRUE

characteristic: public

text: right palm

characteristic: sample type

text: human skin metagenome

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Missing: Not provided

characteristic: age

text: years

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:zone of skin of hand

characteristic: body site

text: right palm

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: USA:CO:Boulder

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: right palm

text: human skin metagenome

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: Submitter Id

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

text: UBERON:sebum

text: UBERON:zone of skin of hand

text: right palm

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: USA:CO:Boulder

characteristic: geo loc name

text: human

text: Homo sapiens

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

characteristic: project name

text: TRUE

characteristic: public

text: right palm

characteristic: sample type

text: human skin metagenome

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: years

text: computer mouse

characteristic: description

text: TRUE

text: urban biome

text: surface

text: built environment

text: dust

text: USA:CO:Boulder

text: indoor metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: computer mouse

text: indoor metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:zone of skin of hand

characteristic: body site

text: right palm

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: USA:CO:Boulder

characteristic: geo loc name

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: right palm

text: human skin metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MRC Centre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, University of Edinburgh.

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Tissues were harvested, single cell suspensions were generated and lysed with QIAzol. Total RNA was extracted using QIAzol lysis reagent (Qiagen) according to manufacturer’s instructions. Libraries were prepared using the NEBNext Multiplex Small RNA Library Prep Set for Illumina following manufacturer's instructions

characteristic: description

text: adult

characteristic: developmental stage

text: Tut4 -/- ; Tut7 -/- ; R26 CreERT/+

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Tut4 and Tut7 knockout

characteristic: phenotype

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MRC Centre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, University of Edinburgh.

text: public

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: Tut4 -/- ; Tut7 -/- ; R26 CreERT/+

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Tut4 and Tut7 knockout

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: adult

text: Tut4 +/- ; Tut7 +/- ; R26 CreERT/+

text: Mus musculus

text: Mus musculus

text: bone marrow

text: wild type

text: Mus musculus


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: adult

text: Tut4 -/- ; Tut7 -/- ; R26 CreERT/+

text: Mus musculus

text: Mus musculus

text: liver

text: Tut4 and Tut7 knockout

text: Mus musculus


text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: Tut4 +/- ; Tut7 +/- ; R26 CreERT/+

text: Mus musculus

text: Mus musculus

text: liver

text: wild type

text: Mus musculus


text: public

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: Medium was removed from plates and cells were lysed directly with QIAzol. Total RNA was extracted using QIAzol lysis reagent (Qiagen) according to manufacturer’s instructions. Libraries were prepared using the NEBNext Multiplex Small RNA Library Prep Set for Illumina following manufacturer's instructions

characteristic: description

text: embryo

characteristic: developmental stage

text: Tut4 -/- ; Tut7 -/- ; R26 CreERT/+

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Tut4 and Tut7 knockout

text: Mus musculus


text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: Tut4 +/- ; Tut7 +/- ; R26 CreERT/+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: Tut4 +/- ; Tut7 +/- ;R26 CreERT/+

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Immortalized mesenchymal embryonic fibroblast

text: house mouse

text: embryo

text: Tut4 -/- ; Tut7 -/- ; R26 CreERT/+

text: Mus musculus

text: Mus musculus

text: Tut4 and Tut7 knockout

text: Mus musculus


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: embryo

text: Tut4 +/- ; Tut7 +/- ; R26 CreERT/+

text: Mus musculus

text: Mus musculus

text: wild type

text: Mus musculus


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: depth

text: estuary metagenome

text: TRUE

characteristic: elevation

text: estuarine biome

characteristic: env biome

text: brackish estuary

characteristic: env feature

text: water

characteristic: env package

text: estuarine water

text: Australia:NT:Darwin

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: estuary metagenome

text: CDU

text: FALSE

text: water

characteristic: sample type

text: estuary metagenome

text: Darwin harbour microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: Submitter Id

text: sediment metagenome

characteristic: description

text: TRUE

text: estuarine biome

text: estuarine mud

text: sediment

text: sediment

text: Australia:NT:Darwin

text: sediment metagenome

characteristic: organism

text: CDU

text: FALSE

text: sediment

text: sediment metagenome

text: Darwin harbour microbiota

characteristic: title


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: depth

text: sediment metagenome

text: TRUE

text: estuarine biome

text: estuarine mud

text: sediment

text: sediment

text: Australia:NT:Darwin

text: sediment metagenome

text: CDU

text: FALSE

text: sediment

text: sediment metagenome

text: Darwin harbour microbiota


text: UCSDMI

text: public

text: estuary metagenome

text: TRUE

characteristic: elevation

text: estuarine biome

characteristic: env biome

text: brackish estuary

characteristic: env feature

text: water

characteristic: env package

text: estuarine water

text: Australia:NT:Darwin

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: estuary metagenome

text: CDU

text: FALSE

text: water

text: estuary metagenome

text: Darwin harbour microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: Submitter Id

text: estuary metagenome

characteristic: description

text: TRUE

text: estuarine biome

text: brackish estuary

text: water

text: estuarine water

text: Australia:NT:Darwin

characteristic: longitude

text: estuary metagenome

text: CDU

text: FALSE

text: water

characteristic: sample type

text: estuary metagenome

text: Darwin harbour microbiota


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: estuary metagenome

text: TRUE

text: estuarine biome

text: brackish estuary

text: water

text: estuarine water

text: Australia:NT:Darwin

text: estuary metagenome

characteristic: organism

text: CDU

text: FALSE

text: water

text: estuary metagenome

characteristic: title

text: Darwin harbour microbiota


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: depth

text: Urban runoff

text: TRUE

characteristic: elevation

text: estuarine biome

characteristic: env biome

text: brackish estuary

characteristic: env feature

text: water

characteristic: env package

text: estuarine water

text: Australia:NT:Darwin

characteristic: geo loc name

text: freshwater metagenome

text: CDU

text: FALSE

text: water

text: freshwater metagenome

text: Darwin harbour microbiota


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: Submitter Id

text: sediment metagenome

characteristic: description

text: TRUE

text: estuarine biome

text: estuarine mud

text: sediment

text: sediment

text: Australia:NT:Darwin

characteristic: host subject id

characteristic: latitude

text: sediment metagenome

text: CDU

text: FALSE

text: sediment

text: sediment metagenome

text: Darwin harbour microbiota


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: sediment metagenome

text: TRUE

text: estuarine biome

text: estuarine mud

text: sediment

text: sediment

text: Australia:NT:Darwin

characteristic: longitude

text: sediment metagenome

text: CDU

text: FALSE

text: sediment

characteristic: sample type

text: sediment metagenome

text: Darwin harbour microbiota


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: depth

text: Urban runoff

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: waste water

characteristic: env feature

text: water

text: waste water

text: Australia:NT:Darwin

text: freshwater metagenome

characteristic: organism

text: CDU

text: FALSE

text: water

text: freshwater metagenome

text: Darwin harbour microbiota

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: Submitter Id

text: effluent metagenome

characteristic: description

text: TRUE

text: urban biome

text: waste water

text: wastewater/sludge

characteristic: env package

text: waste water

text: Australia:NT:Darwin

characteristic: geo loc name

text: wastewater metagenome

text: CDU

text: FALSE

text: water

text: wastewater metagenome

text: Darwin harbour microbiota


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: effluent metagenome

text: TRUE

text: urban biome

text: waste water

text: wastewater/sludge

text: waste water

text: Australia:NT:Darwin

characteristic: host subject id

characteristic: latitude

text: wastewater metagenome

text: CDU

text: FALSE

text: water

text: wastewater metagenome

text: Darwin harbour microbiota


text: public

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: collection date

text: Draft genome assembly of sulfur-oxidizer endosymbiont from Bathymodiolus heckerae, Clade 1, Chapopote

text: sea

characteristic: environment (biome)

text: cold seep

characteristic: environment (feature)

text: gill tissue

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Bathymodiolus heckerae thiotrophic gill symbiont

text: Comparative genomic insights into the roles of toxin-related genes in beneficial bacteria and theri acquisition by horizontal gene transfer

characteristic: project name

text: Illumina HiSeq

characteristic: sequencing method

text: Genome sequencing of the sulfur-oxidizer symbiont, Clade 1, of Bathymodiolus heckerae


SPONN

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SPONN

characteristic: Submitter Id

text: Draft genome sequencing of the sulfur-oxidizing symbiont of an encrusting poecilosclerid sponge

characteristic: description

text: sea

text: cold seep

text: sponge tissue

text: Mexico

text: host-associated

text: metagenome

text: uncultured SUP05 cluster bacterium

characteristic: organism

text: Horizontal acquisition and gene family expansion of toxin-related genes in deep-sea animal symbionts

text: uncultured SUP05 cluster bacterium

text: Illumina HiSeq

text: Sulfur-oxidizing symbionts of an encrusting poecilosclerid sponge

characteristic: title


SPBRAN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SPBRAN

characteristic: collection date

text: Draft genome sequencing of the sulfur oxidizing symbiont of a branching oecilosclerid sponge

text: sea

characteristic: environment (biome)

text: cold seep

characteristic: environment (feature)

text: sponge tissue

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: uncultured SUP05 cluster bacterium

text: uncultured SUP05 cluster bacterium

text: Illumina HiSeq

text: Sulfur-oxidizing symbiont of a branching poecilosclerid sponge


SPONL

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SPONL

text: sea

text: cold seep

text: sponge tissue

text: Mexico

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: uncultured SUP05 cluster bacterium

characteristic: project name

text: uncultured SUP05 cluster bacterium

text: Illumina HiSeq

characteristic: sequencing method

text: Sulfur-oxidizing symbiont of an encrusting poecilosclerid sponge


CRYPA

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CRYPA

characteristic: Submitter Id

text: Draft genome sequencing of the sulfur-oxidizing symbiont of B. sp. nov. Gulf of Mexico, DC673

characteristic: description

text: sea

text: cold seep

text: gill tissue

text: USA

text: host-associated

text: metagenome

text: uncultured SUP05 cluster bacterium

characteristic: organism

text: Horizontal acquisition and gene family expansion of toxin-related genes in deep-sea bivalve symbionts

text: uncultured SUP05 cluster bacterium

text: Illumina HiSeq

text: SOX symbiont of B. sp. nov GoM from Clade 2

characteristic: title


CRYPD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CRYPD

characteristic: collection date

text: sea

characteristic: environment (biome)

text: cold seep

characteristic: environment (feature)

text: gill tissue

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: uncultured SUP05 cluster bacterium

text: uncultured SUP05 cluster bacterium

text: Illumina HiSeq

text: SOX symbiont of B. sp. nov GoM from Clade 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

text: Porphyromonadaceae bacterium MV12

text: Porphyromonadaceae bacterium MV12

characteristic: strain

text: Massilibacteroides vaginae genome


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: PHE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: serotype 37 non-pneumococus analysis

characteristic: description

text: unidentified

characteristic: organism

text: unidentified

characteristic: title


text: PHE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: serotype 37 non-pneumococus analysis

text: Streptococcus pseudopneumoniae

text: Streptococcus pseudopneumoniae


characteristic: ENA-CHECKLIST

text: PHE

text: public

text: serotype 37 non-pneumococus analysis

text: Streptococcus mitis

text: Streptococcus mitis


characteristic: ENA-FIRST-PUBLIC

text: UOM

text: public

text: human

text: Egyptian mummy from Manchester Museum KNII, Male

text: Homo sapiens

text: Homo sapiens

text: KNI


text: public

tag: Namespace:Centrum Medyczne Ksztalcenia Podyplomowego

text: human

characteristic: family

text: SON

characteristic: family status

text: Homo sapiens

text: Homo sapiens

text: macroAST, GOT1 mutation positive


characteristic: ENA-LAST-UPDATE

text: Centrum Medyczne Ksztalcenia Podyplomowego

text: public

text: human

text: FATHER

text: Homo sapiens

text: Homo sapiens

text: macroAST, GOT1 mutation positive


characteristic: External Id

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: macroAST, GOT1 mutation positive


characteristic: INSDC center name

text: public

text: human

text: SON

text: Homo sapiens

text: Homo sapiens

text: macroAST, GOT1 mutation positive


text: public

text: human

characteristic: common name

text: DAUGHTER

text: Homo sapiens

text: Homo sapiens

text: macroAST, GOT1 mutation positive


text: public

text: human

text: MOTHER

text: Homo sapiens

text: Homo sapiens

text: macroAST, GOT1 mutation positive


COPD

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

text: COPD

tag: Namespace:FUNCTIONAL GENOMICS CENTER ZURICH

text: human

text: COPD

text: Homo sapiens

text: Homo sapiens

text: COPD


text: unspecified

text: public

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Surface sterilized Arabidopsis thaliana seeds were sown on 0.5x Murashige and Skoog (MS) media (Duchefa, Netherlands) solidified with 0.8 % Agar (Duchefa, Netherlands) at pH 5.8 (adjusted with MES). After two days of stratification at 4 °C plates were transferred to growth chambers (Rumed, Rubarth Apparate GmbH) with a photoperiod of 16 h 22 °C: 8 h 18 °C, light : dark at 120-150 μmol m-2s-1 light intensity. Total RNA was extracted from approximately 75-100 mg mg frozen plant material with the SV Total RNA Isolation System (Promega Corporation, Madison, WI, USA). Quality of RNA was measured using an Agilent 2100 Bioanalyzer (Agilent Technologies). rRNA was removed with the Ribo-Zero Plant rRNA removal kit for plant leafs (Illumina). RNA libraries were prepared using the NEBNext Ultra Directional RNA Library Prep Kit (New England Biolabs).

text: 12 day old seedlings

characteristic: developmental stage

characteristic: ecotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: unspecified

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: description

text: 12 day old seedlings

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana


E-MTAB-5691:Sample 1

text: unspecified

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5691:Sample 1

text: ArrayExpress

text: mature reproductive cell

characteristic: cell type

text: Protocols: Mechanical separation of the cell types was performed at the developmental stage just before the onset of cell cleavage of reproductive cells; only this stage allows for clean separation of somatic and reproductive cells. Separation started with breaking the spheroids into parts in a Dounce homogenizer without harming the cells. Cell-size based separation of cell types was achieved by successive filtration on screens of different mesh sizes and a centrifugation step, just as previously described (Nematollahi et al., 2006). The clean separation of somatic cell sheets and reproductive cells was checked microscopically Cell-size based separation of cell types was achieved by successive filtration on screens of different mesh sizes and a centrifugation step Total RNA was extracted from separated cell types using the phenol-based TRI Reagent Total RNA isolated both from somatic and reproductive cells was prepared for RNA-seq analysis with three biological replicates each. For each cell type and biological replicate, 1 µg of total RNA was subjected to poly(A)+ RNA selection and mRNA fragmentation. This was followed by random primer cDNA synthesis and adapter ligation.

text: Volvox carteri

characteristic: organism

text: Volvox carteri

text: Volvox carteri

text: Sample 1

characteristic: title


E-MTAB-5691:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: unspecified

text: public

text: E-MTAB-5691:Sample 2

text: ArrayExpress

text: mature reproductive cell

text: before the onset of cell cleavage of reproductive cells

text: Volvox carteri

text: Volvox carteri

text: Volvox carteri

text: Sample 2


E-MTAB-5691:Sample 3

characteristic: External Id

text: unspecified

characteristic: INSDC center name

text: public

text: E-MTAB-5691:Sample 3

text: ArrayExpress

text: mature reproductive cell

text: Volvox carteri

text: Volvox carteri

text: Volvox carteri

text: Sample 3


E-MTAB-5691:Sample 4

text: unspecified

text: public

text: E-MTAB-5691:Sample 4

text: ArrayExpress

characteristic: broker name

text: somatic cell

characteristic: developmental stage

text: Volvox carteri

text: Volvox carteri

text: Volvox carteri

text: Sample 4


E-MTAB-5691:Sample 5

text: unspecified

text: public

text: E-MTAB-5691:Sample 5

text: ArrayExpress

text: somatic cell

text: Volvox carteri

text: Volvox carteri

text: Volvox carteri

text: Sample 5


E-MTAB-5691:Sample 6

text: unspecified

text: public

text: E-MTAB-5691:Sample 6

text: ArrayExpress

text: somatic cell

text: Volvox carteri

text: Volvox carteri

text: Volvox carteri

text: Sample 6


text: Mouse

characteristic: ArrayExpress-PHENOTYPE

text: female

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Female

characteristic: gender

text: Mus musculus

text: Mouse

characteristic: phenotype

text: Mus musculus

characteristic: subject id


text: unspecified

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: plants were maintained in growth chamber (Fitotron) under 16 h photoperiod of 400 μ mol m−2s−1 light intensity, 26 ± 2 °C and 65% relative humidity agrobacterium transformation exactly as described in Martins et al. (2015) Biotechnology Reports 6: 41-44 Total RNA of stem was obtained using NEBNext® RNA Library Prep Set Kit for Illumina® following manufacturer's instructions. Ribo-ZeroTM Magnetic Kit + NEBNext® Ultra™ RNA Library Prep Kit for Illumina®

characteristic: description

text: early reproductive phase

text: wild type genotype

characteristic: genotype

text: control

characteristic: individual

text: Setaria viridis

text: Setaria viridis

text: stem

characteristic: organism part

text: Setaria viridis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: unspecified

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: early reproductive phase

characteristic: developmental stage

text: BAHD01 RNAi cassette under the control of the maize ubiquitin promoter

text: Setaria viridis

characteristic: organism

text: Setaria viridis

text: stem

text: Setaria viridis

characteristic: title


text: unspecified

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: stiff brome

characteristic: common name

text: Protocols: Plants were grown in controlled environments as previously described Molinari et al. (2013) Frontiers in Plant Science 4: 50 Agrobacterium transformation of brachypodium distachyon Bd21 was performed as described Vogel & Hill (2008) Plant Cell Reports 27(3): 471-478. RNA was isolated as previously described Molinari et al. (2013) Frontiers in Plant Science 4: 50. RNA-seq libraries were constructed the Ion Total RNA-Seq Kit v2 (ThermoFisher Scientific) according to the supplied protocol.

text: early reproductive phase

text: wild type genotype

text: B16 plTY73 negative

text: Brachypodium distachyon

text: Brachypodium distachyon

text: stem

text: Brachypodium distachyon


text: unspecified

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: stiff brome

text: early reproductive phase

text: wild type genotype

text: B2 plTY73 negative

text: Brachypodium distachyon

text: Brachypodium distachyon

text: stem

text: Brachypodium distachyon


text: unspecified

text: public

text: ArrayExpress

text: stiff brome

characteristic: description

text: early reproductive phase

text: wild type genotype

characteristic: genotype

text: B5 plTY73 negative

characteristic: individual

text: Brachypodium distachyon

text: Brachypodium distachyon

text: stem

text: Brachypodium distachyon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: unspecified

text: public

text: ArrayExpress

text: stiff brome

text: early reproductive phase

text: B16 plTY73 positive

text: Brachypodium distachyon

text: Brachypodium distachyon

text: stem

characteristic: organism part

text: Brachypodium distachyon


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: unspecified

characteristic: INSDC center name

text: public

text: ArrayExpress

text: stiff brome

text: early reproductive phase

text: B5 plTY73 positive

text: Brachypodium distachyon

text: Brachypodium distachyon

text: stem

text: Brachypodium distachyon


text: CEBITEC

text: public

characteristic: collection date

text: Complete genome sequence of Streptomyces chartreusis NRRL 3882

text: Soil

characteristic: environment (biome)

text: Soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: NRRL 3882

characteristic: isolate

text: Streptomyces chartreusis NRRL 3882

characteristic: organism

characteristic: project name

text: Streptomyces chartreusis NRRL 3882

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: months

characteristic: age units

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: fecal swab S3D35P6

characteristic: description

text: omnivore

characteristic: diet

text: TRUE

characteristic: elevation

characteristic: emp status

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Davis

characteristic: geo loc name

text: Sus scrofula

characteristic: host scientific name

characteristic: host subject id

text: pig

characteristic: host taxid

characteristic: latitude

text: piglet

characteristic: life stage

characteristic: longitude

text: pig gut metagenome

text: UC Davis

text: FALSE

text: stool

characteristic: sample type

text: pig gut metagenome

text: Missing: Not provided

characteristic: sex

characteristic: title

text: Diet Shapes the Gut Microbiome of Pigs During Nursing and Weaning

text: Missing: Not provided

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: months

characteristic: age units

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: fecal swab S3D5P6

characteristic: description

text: omnivore

characteristic: diet

text: TRUE

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:Davis

text: Sus scrofula

text: pig

text: piglet

text: pig gut metagenome

characteristic: organism

text: UC Davis

text: FALSE

text: stool

text: pig gut metagenome

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Missing: Not provided

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal swab S3D5P7

text: omnivore

text: TRUE

characteristic: elevation

characteristic: emp status

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Davis

characteristic: geo loc name

text: Sus scrofula

characteristic: host scientific name

characteristic: host subject id

text: pig

characteristic: host taxid

characteristic: latitude

text: piglet

characteristic: life stage

characteristic: longitude

text: pig gut metagenome

text: UC Davis

text: FALSE

text: stool

characteristic: sample type

text: pig gut metagenome

text: Missing: Not provided

characteristic: sex

characteristic: title

text: Missing: Not provided

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: months

characteristic: age units

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: fecal swab S3D5P9

characteristic: description

text: omnivore

characteristic: diet

text: TRUE

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:Davis

text: Sus scrofula

text: pig

text: piglet

text: pig gut metagenome

characteristic: organism

text: UC Davis

text: FALSE

text: stool

text: pig gut metagenome

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Missing: Not provided

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal swab S3D7P1

text: omnivore

text: TRUE

characteristic: elevation

characteristic: emp status

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Davis

characteristic: geo loc name

text: Sus scrofula

characteristic: host scientific name

characteristic: host subject id

text: pig

characteristic: host taxid

characteristic: latitude

text: piglet

characteristic: life stage

characteristic: longitude

text: pig gut metagenome

text: UC Davis

text: FALSE

text: stool

characteristic: sample type

text: pig gut metagenome

text: Missing: Not provided

characteristic: sex

characteristic: title

text: Missing: Not provided

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: months

characteristic: age units

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: fecal swab S3D7P3

characteristic: description

text: omnivore

characteristic: diet

text: TRUE

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:Davis

text: Sus scrofula

text: pig

text: piglet

text: pig gut metagenome

characteristic: organism

text: UC Davis

text: FALSE

text: stool

text: pig gut metagenome

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Missing: Not provided

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal swab S3D7P4

text: omnivore

text: TRUE

characteristic: elevation

characteristic: emp status

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Davis

characteristic: geo loc name

text: Sus scrofula

characteristic: host scientific name

characteristic: host subject id

text: pig

characteristic: host taxid

characteristic: latitude

text: piglet

characteristic: life stage

characteristic: longitude

text: pig gut metagenome

text: UC Davis

text: FALSE

text: stool

characteristic: sample type

text: pig gut metagenome

text: Missing: Not provided

characteristic: sex

characteristic: title

text: Missing: Not provided

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: months

characteristic: age units

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: fecal swab S3D7P5

characteristic: description

text: omnivore

characteristic: diet

text: TRUE

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:Davis

text: Sus scrofula

text: pig

text: piglet

text: pig gut metagenome

characteristic: organism

text: UC Davis

text: FALSE

text: stool

text: pig gut metagenome

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Missing: Not provided

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal swab s1d14p1

text: omnivore

text: TRUE

characteristic: elevation

characteristic: emp status

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Davis

characteristic: geo loc name

text: Sus scrofula

characteristic: host scientific name

characteristic: host subject id

text: pig

characteristic: host taxid

characteristic: latitude

text: piglet

characteristic: life stage

characteristic: longitude

text: pig gut metagenome

text: UC Davis

text: FALSE

text: stool

characteristic: sample type

text: pig gut metagenome

text: Missing: Not provided

characteristic: sex

characteristic: title

text: Missing: Not provided

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: months

characteristic: age units

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: fecal swab s1d14p10

characteristic: description

text: omnivore

characteristic: diet

text: TRUE

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:Davis

text: Sus scrofula

text: pig

text: piglet

text: pig gut metagenome

characteristic: organism

text: UC Davis

text: FALSE

text: stool

text: pig gut metagenome

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Missing: Not provided

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal swab s1d14p11

text: omnivore

text: TRUE

characteristic: elevation

characteristic: emp status

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Davis

characteristic: geo loc name

text: Sus scrofula

characteristic: host scientific name

characteristic: host subject id

text: pig

characteristic: host taxid

characteristic: latitude

text: piglet

characteristic: life stage

characteristic: longitude

text: pig gut metagenome

text: UC Davis

text: FALSE

text: stool

characteristic: sample type

text: pig gut metagenome

text: Missing: Not provided

characteristic: sex

characteristic: title

text: Missing: Not provided

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: months

characteristic: age units

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: fecal swab s1d14p2

characteristic: description

text: omnivore

characteristic: diet

text: TRUE

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:Davis

text: Sus scrofula

text: pig

text: piglet

text: pig gut metagenome

characteristic: organism

text: UC Davis

text: FALSE

text: stool

text: pig gut metagenome

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Missing: Not provided

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal swab s1d14p4

text: omnivore

text: TRUE

characteristic: elevation

characteristic: emp status

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:Davis

characteristic: geo loc name

text: Sus scrofula

characteristic: host scientific name

characteristic: host subject id

text: pig

characteristic: host taxid

characteristic: latitude

text: piglet

characteristic: life stage

characteristic: longitude

text: pig gut metagenome

text: UC Davis

text: FALSE

text: stool

characteristic: sample type

text: pig gut metagenome

text: Missing: Not provided

characteristic: sex

characteristic: title

text: Missing: Not provided

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

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text: UBERON:feces

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text: UBERON:feces

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text: UBERON:feces

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text: Sus scrofula

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text: fecal swab s1d1p2

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text: animal-associated habitat

text: host-associated

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text: USA:CA:Davis

text: Sus scrofula

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text: UC Davis

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text: fecal swab s1d1p3

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text: urban biome

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text: animal-associated habitat

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text: host-associated

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text: pig gut metagenome

text: UC Davis

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text: urban biome

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characteristic: env biome

text: animal-associated habitat

characteristic: env feature

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characteristic: host subject id

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characteristic: latitude

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characteristic: longitude

text: pig gut metagenome

text: UC Davis

text: FALSE

text: stool

characteristic: sample type

text: pig gut metagenome

text: Missing: Not provided

characteristic: sex

characteristic: title

text: Missing: Not provided

characteristic: weight