characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

characteristic: description

text: No

characteristic: environmental sample

text: Salmonella

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: ampicillin

value: EUCAST

value: resistant

value: streptomycin

value: CA-SFM

value: mezlocillin

value: DIN


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

text: A collection of Salmonella Typhimurium NGS data from Germany. These samples are submitted by RKI to the COMPARE project.

text: No

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: stool

text: gastrointestinal system

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: organism

text: Typhimurium

characteristic: serovar

text: Salmonella Typhimurium from human or food

characteristic: title

type: AMR curated data - CABBAGE

value: amikacin

value: CLSI

value: broth dilution

value: mg/L

value: susceptible

value: Salmonella enterica

value: chloramphenicol

value: kanamycin

value: WRG

value: ciprofloxacin

value: cefoxitin

value: intermediate

value: gentamicin

value: cefotaxime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

characteristic: description

text: No

characteristic: environmental sample

text: Salmonella

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: ceftazidime

value: streptomycin

value: CA-SFM

value: resistant

value: ampicillin

value: EUCAST

value: oxytetracycline


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

text: No

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Sus scrofa domesticus

text: Yes

characteristic: is the sequenced pathogen host associated?

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: CLSI

value: broth dilution

value: mg/L

value: susceptible

value: mezlocillin

value: DIN

value: nalidixic acid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

text: No

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: serovar

characteristic: title

value: ciprofloxacin

value: Salmonella enterica

value: cefoxitin

value: intermediate

value: chloramphenicol

value: meropenem

value: kanamycin

value: WRG


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Salmonella

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: amikacin

value: ceftazidime

value: cefotaxime

value: gentamicin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

text: No

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: CLSI

value: broth dilution

value: mg/L

value: oxytetracycline

value: ampicillin

value: EUCAST

value: resistant

value: streptomycin

value: CA-SFM


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

text: No

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: serovar

characteristic: title

value: ciprofloxacin

value: susceptible

value: Salmonella enterica

value: nalidixic acid

value: cefoxitin

value: chloramphenicol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

characteristic: description

text: No

characteristic: environmental sample

text: Salmonella

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: ceftazidime

value: intermediate

value: cefotaxime

value: kanamycin

value: WRG


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

text: No

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: amikacin

value: CLSI

value: broth dilution

value: mg/L

value: mezlocillin

value: DIN

value: gentamicin

value: oxytetracycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

text: No

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: serovar

characteristic: title

value: susceptible

value: Salmonella enterica

value: ampicillin

value: EUCAST


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Salmonella

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: ceftazidime

value: nalidixic acid

value: chloramphenicol

value: cefoxitin

value: ciprofloxacin

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

text: No

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: resistant

value: CLSI

value: cefotaxime

value: amikacin

value: streptomycin

value: CA-SFM


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

text: No

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: serovar

characteristic: title

value: broth dilution

value: mg/L

value: mezlocillin

value: DIN

value: intermediate

value: kanamycin

value: WRG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

characteristic: description

text: No

characteristic: environmental sample

text: Salmonella

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: ceftazidime

value: susceptible

value: Salmonella enterica

value: chloramphenicol

value: gentamicin

value: nalidixic acid

value: oxytetracycline


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

text: No

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: cefotaxime

value: CLSI

value: meropenem

value: ampicillin

value: EUCAST

value: resistant

value: cefoxitin

value: ciprofloxacin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

text: No

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: serovar

characteristic: title

value: broth dilution

value: mg/L

value: intermediate

value: kanamycin

value: mezlocillin

value: DIN

value: streptomycin

value: CA-SFM


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Salmonella

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: ceftazidime

value: susceptible

value: Salmonella enterica

value: WRG

value: gentamicin

value: amikacin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

text: No

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: CLSI

value: oxytetracycline

value: chloramphenicol

value: ampicillin

value: EUCAST


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

text: No

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: serovar

characteristic: title

value: broth dilution

value: mg/L

value: intermediate

value: ciprofloxacin

value: cefoxitin

value: cefotaxime

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

characteristic: description

text: No

characteristic: environmental sample

text: Salmonella

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: susceptible

value: ceftazidime

value: streptomycin

value: CA-SFM

value: mezlocillin

value: DIN

value: kanamycin


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

text: No

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: CLSI

value: Salmonella enterica

value: chloramphenicol

value: WRG

value: nalidixic acid

value: gentamicin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

text: No

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: serovar

characteristic: title

value: broth dilution

value: mg/L

value: resistant

value: ampicillin

value: EUCAST

value: oxytetracycline


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Salmonella

text: Germany

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: susceptible

value: cefoxitin

value: ciprofloxacin

value: amikacin

value: cefotaxime

value: ceftazidime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

text: No

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: not provided

text: Yes

characteristic: is the sequenced pathogen host associated?

text: not provided

text: food (meat)

characteristic: isolation source non-host-associated

text: food (meat)

text: Typhimurium

value: CLSI

value: Salmonella enterica

value: streptomycin

value: CA-SFM

value: intermediate

value: mezlocillin

value: DIN

value: kanamycin


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Salmonella

text: Germany

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: stool

text: gastrointestinal system

characteristic: organism

text: Typhimurium

characteristic: serovar

characteristic: title

value: gentamicin

value: broth dilution

value: mg/L

value: chloramphenicol

value: nalidixic acid

value: ampicillin

value: WRG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DEU

text: Germany

text: No

characteristic: environmental sample

text: Salmonella

characteristic: genus

text: Germany

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: not provided

text: Typhimurium

value: EUCAST

value: resistant

value: susceptible

value: amikacin

value: meropenem

value: cefotaxime


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: INSDC status

text: DEU

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Salmonella

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Homo sapiens

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: stool

text: stool

text: gastrointestinal system

text: Typhimurium

value: ceftazidime

value: CLSI

value: Salmonella enterica

value: cefoxitin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: unspecified

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 10 to 12

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Mice were housed in an enhanced barrier specific pathogen-free facility under a strict 12-hour light cycle and fed irradiated chow diet (PicoLab Rodent Chow 20, Purina Mills). Mice were maintained on a C57BL/6 background. A heterozygous x heterozygous breeding scheme was used to generate Atg16l1 T300A and wildtype littermate control mice. All study protocols were approved by the Washington University Animal Studies Committee. Four- to six-week-old mice were exposed to mainstream cigarette smoking 4 cigarettes/day, 5 days/week, for 6 weeks, using Kentucky research cigarette 3R4F in a smoking chamber. All mice were sacrificed after completing 6 weeks of smoking exposure, and full thickness ileum were stored in RNAlater for RNA extraction. RNA was isolated using Qiagen RNeasy Minikit, according to the kit protocol. Total RNA concentration and purity was obtained from an absorbance ratio at 260nm and 280nm. Total RNA was quantified using the Quant-iT™ RiboGreen® RNA Assay Kit and normalized to 4ng/ul. Library preparation was performed by the Genome Technology Access Center (GTAC) at Washington University. Library preparation was performed with 1ug of total RNA. Total RNA integrity was determined using an Agilent bioanalyzer. Ribosomal RNA was removed by a hybridization method using Ribo-Zero kits (Illumina-EpiCentre). mRNA was then fragmented in buffer containing 40mM Tris Acetate pH 8.2, 100mM Potassium Acetate and 30mM Magnesium Acetate and heating to 94 degrees for 150 seconds. mRNA was reverse transcribed to yield cDNA using SuperScript III RT enzyme (Life Technologies, per manufacturer’s instructions) and random hexamers. A second strand reaction was performed to yield ds-cDNA. cDNA was blunt ended, had an A base added to the 3’ ends, and then had Illumina sequencing adapters ligated to the ends. Ligated fragments were then amplified for 12 cycles using primers incorporating unique index tags. Fragments were sequenced on an Illumina HiSeq-2500 using single reads extending 50 bases.

text: non-smoking

characteristic: environmental history

text: Atg16l1 T300A

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

characteristic: organism part

text: Mus musculus

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: unspecified

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 10 to 12

text: ArrayExpress

text: house mouse

characteristic: description

text: smoking

text: Atg16l1 T300A

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: unspecified

characteristic: INSDC center name

text: public

text: 10 to 12

text: ArrayExpress

text: house mouse

text: non-smoking

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus


text: unspecified

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: smoking

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus


text: public

text: Dickeya dadantii 3937

characteristic: organism

text: Dickeya dadantii 3937

text: Tn-seq of Dickeya dadantii 3937 in LB sample #1

type: has member


text: public

text: Dickeya dadantii 3937

text: Dickeya dadantii 3937

text: Tn-seq of Dickeya dadantii 3937 in LB sample #2


text: public

text: Dickeya dadantii 3937

text: Dickeya dadantii 3937

text: Tn-seq of Dickeya dadantii 3937 in Chicory sample #1


text: public

text: Dickeya dadantii 3937

text: Dickeya dadantii 3937

text: Tn-seq of Dickeya dadantii 3937 in Chicory sample #2


text: unspecified

text: public

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: 500 ng of DNA was used. Extension-ligation was performed according to manufacturer’s protocol. Two PCR cycles were performed as follows: 95°C 3 minutes, followed by 2 cycles of 95°C for 30 seconds, 66°C for 30 seconds, and 72°C for 60 seconds. Following two cycles of PCR, Ampure Bead cleanup was carried out according to standard protocol and eluted in 25 uL. 20 uL of PCR product, 22 uL of PMM2/TDP1 and 4 uL of the i7 primer supplied with from the TruSeq Custom Amplicon Index Kit were added to PCR tubes, and PCR was carried out using the following conditions: 95°C for 30 seconds; 22 cycles of 95°C for 30 seconds, 66°C for 30 seconds, and 72°C for 60 seconds; and finally 72°C for 5 minutes

text: breast carcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: unspecified

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

characteristic: title


text: ANAND

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Cecal microbiome of Aseel breed using 16s rRNA, V1-V2 region

characteristic: description

text: Terrestrial

characteristic: environment (biome)

text: Research Station

characteristic: environment (feature)

text: Organic Material

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ceacum

characteristic: host body site

text: Chicken

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: Tamilnadu organized study

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Chicken Ceacal microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANAND

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Cecal microbiome of Aseel breed using 16s rRNA, V3-V4 region

text: Terrestrial

text: Research Station

text: Organic Material

text: India

text: ceacum

text: Chicken

text: host-associated

text: mimarks-survey

text: metagenome

characteristic: organism

text: Tamilnadu organized study

text: metagenome

text: Illumina

text: Chicken Ceacal microbiome

characteristic: title


text: ANAND

text: public

characteristic: Submitter Id

characteristic: collection date

text: Cecal microbiome of Aseel breed using 16s rRNA, V5-V6 region

characteristic: description

text: Terrestrial

characteristic: environment (biome)

text: Research Station

characteristic: environment (feature)

text: Organic Material

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ceacum

characteristic: host body site

text: Chicken

characteristic: host common name

text: host-associated

text: mimarks-survey

text: metagenome

text: Tamilnadu organized study

text: metagenome

text: Illumina

text: Chicken Ceacal microbiome


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: NIOO-KNAW

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: terrestrial biome

characteristic: environment (biome)

text: forest

text: soil

text: Netherlands

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: cse-vdWal

characteristic: project name

text: soil metagenome

text: illumina

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

text: public

text: terrestrial biome

text: forest

characteristic: environment (feature)

text: wood

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: wood decay metagenome

text: cse-vdWal

text: wood decay metagenome

text: illumina


text: ANAND

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Cecal microbiome of GCB breed using 16s rRNA, V1-V2 region

characteristic: description

text: Terrestrial

text: Research Station

text: Organic Material

text: India

text: ceacum

characteristic: host body site

text: Chicken

characteristic: host common name

characteristic: host taxid

text: host-associated

text: mimarks-survey

text: metagenome

text: Tamilnadu organized study

text: metagenome

text: Illumina

text: Chicken Ceacal microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANAND

text: public

text: Cecal microbiome of GCB breed using 16s rRNA, V3-V4 region

text: Terrestrial

characteristic: environment (biome)

text: Research Station

text: Organic Material

text: India

text: ceacum

text: Chicken

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: organism

text: Tamilnadu organized study

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Chicken Ceacal microbiome

characteristic: title


text: ANAND

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cecal microbiome of GCB breed using 16s rRNA, V5-V6 region

text: Terrestrial

text: Research Station

characteristic: environment (feature)

text: Organic Material

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ceacum

text: Chicken

text: host-associated

text: mimarks-survey

text: metagenome

text: Tamilnadu organized study

text: metagenome

text: Illumina

text: Chicken Ceacal microbiome


UCL 0682

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

text: public

text: UCL 0682

tag: Namespace:UNIVERSITY COLLEGE LONDON

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


text: NIOO-KNAW

text: public

characteristic: collection date

text: terrestrial biome

characteristic: environment (biome)

text: forest

text: wood

text: Netherlands

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: wood decay metagenome

characteristic: organism

text: cse-vdWal

characteristic: project name

text: wood decay metagenome

text: illumina

characteristic: sequencing method

characteristic: title


text: ANAND

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cecal microbiome of Kadaknath breed using 16s rRNA, V1-V2 region

characteristic: description

text: Terrestrial

text: Research Station

characteristic: environment (feature)

text: Organic Material

characteristic: environment (material)

text: India

text: ceacum

characteristic: host body site

text: Chicken

characteristic: host common name

characteristic: host taxid

text: host-associated

text: mimarks-survey

text: metagenome

text: Tamilnadu organized study

text: metagenome

text: Illumina

text: Chicken Ceacal microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANAND

text: public

characteristic: collection date

text: Cecal microbiome of Kadaknath breed using 16s rRNA, V3-V4 region

text: Terrestrial

characteristic: environment (biome)

text: Research Station

text: Organic Material

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ceacum

text: Chicken

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: Tamilnadu organized study

text: metagenome

text: Illumina

text: Chicken Ceacal microbiome


text: ANAND

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cecal microbiome of Kadaknath breed using 16s rRNA, V5-V6 region

characteristic: description

text: Terrestrial

text: Research Station

text: Organic Material

text: India

text: ceacum

text: Chicken

text: host-associated

text: mimarks-survey

text: metagenome

characteristic: organism

text: Tamilnadu organized study

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Chicken Ceacal microbiome

characteristic: title


UCL 0657

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

text: public

text: UCL 0657

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


text: UNIVERSITY COLLEGE LONDON

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


text: developmental impairments

characteristic: ArrayExpress-PHENOTYPE

text: mixed

characteristic: ArrayExpress-SEX

text: mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Mixed

characteristic: gender

text: Mus musculus

text: developmental impairments

characteristic: phenotype

text: Mus musculus

characteristic: subject id


text: unspecified

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Pancreatic islets (50-200) were extracted from homozygous Pax6 floxed mice which were also either hemizygous or null for Pdx1-CreERT one week after the completion of tamoxifen treatment by pancreatic distension and digestion with collagenase. Islets were incubated in RPMI media containing 11 mM glucose, 10% FCS, 100 IU/mL penicillin, 100 µg/mL streptomycin, at 5% CO2 and 37 C for 24 h. Transgenic mice were crossed to produce offspring which were all homozygous for floxed Pax6 alleles and either hemizygous or null for Pdx1-CreERT. All mice were injected with 5 daily intraperitoneal injections of tamoxifen (2 mg). RNA was extracted with TRIzol (Invitrogen) using the manufacturer's protocol, with the addition of glycogen as a co-precipitate. Resuspended RNA was treated with DNAse I (Sigma-Aldrich), which was then heat inactivated. Polyadenylated RNA was purified with oligo-dT beads and the library constructed using the TruSeq Stranded kit (Illumina). Illumina Universal Paired-end adapters were used, and custom barcoding sequences incorporated during the amplification rounds (15 cycles) for multiplexing.

text: Pax6 fl/fl

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

characteristic: organism part

text: wild type

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: unspecified

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: Pax6 fl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: islet of Langerhans

text: wild type

text: Mus musculus

text: female

characteristic: title


text: unspecified

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: Pdx1-CreERT / Pax6 fl/fl

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

text: beta cell specific Pax6 knockout

characteristic: phenotype

text: Mus musculus

text: male


text: unspecified

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Pdx1-CreERT / Pax6 fl/fl

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

text: beta cell specific Pax6 knockout

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SSI

text: public

text: RKI

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Salmonella Typhimurium monophasics


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MILAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF MILAN

text: Listeria monocytogenes

characteristic: common name

text: Samples from community outbreak

characteristic: description

text: Italy

text: diseased

text: Homo sapiens

text: Human

characteristic: isolation source

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MILAN

text: public

characteristic: Submitter Id

characteristic: collection date

text: Listeria monocytogenes

text: Samples from community outbreak

text: Italy

characteristic: geographic location (country and/or sea)

text: Cheese

text: Cheese

text: Listeria monocytogenes

text: Listeria monocytogenes


UCL 0654

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY COLLEGE LONDON

text: public

text: UCL 0654

text: human

text: Homo sapiens

text: Homo sapiens

text: Monocyte RNA-Seq Samples


E-MTAB-5668:APP/PS1 mouse27

characteristic: External Id

text: unspecified

text: public

text: E-MTAB-5668:APP/PS1 mouse27

text: ArrayExpress

characteristic: broker name

text: western European house mouse

text: Protocols: Mice were maintained in specific pathogen-free conditions and used in accordance with the Institutional Animal Care and Use Committee. RNA was purified from the hippocampus of mice. PolyA selected strand-specific libraries were generated with 1 μg of input RNA using the TruSeq Stranded mRNA Sample Prep Kit (Illumina). Samples were sized, quantified and validated on a Bioanalyzer.

characteristic: genotype

characteristic: individual

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: APP/PS1 mouse27


E-MTAB-5668:APP/PS1 mouse47

text: unspecified

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5668:APP/PS1 mouse47

text: ArrayExpress

text: western European house mouse

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: APP/PS1 mouse47


E-MTAB-5668:APP/PS1 mouse50

text: unspecified

text: public

characteristic: SRA accession

text: E-MTAB-5668:APP/PS1 mouse50

text: ArrayExpress

text: western European house mouse

characteristic: common name

characteristic: description

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: APP/PS1 mouse50


E-MTAB-5668:APP/PS1 mouse62

characteristic: ENA-CHECKLIST

text: unspecified

text: public

text: E-MTAB-5668:APP/PS1 mouse62

text: ArrayExpress

text: western European house mouse

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus

text: Mus musculus domesticus

text: APP/PS1 mouse62

characteristic: title


E-MTAB-5668:IL18KO APP/PS1 mouse205

characteristic: ENA-FIRST-PUBLIC

text: unspecified

text: public

text: E-MTAB-5668:IL18KO APP/PS1 mouse205

characteristic: Submitter Id

text: ArrayExpress

text: western European house mouse

text: IL18KO APP/PS1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: IL18KO APP/PS1 mouse205


E-MTAB-5668:IL18KO APP/PS1 mouse228

characteristic: ENA-LAST-UPDATE

text: unspecified

text: public

text: E-MTAB-5668:IL18KO APP/PS1 mouse228

text: ArrayExpress

text: western European house mouse

text: IL18KO APP/PS1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: IL18KO APP/PS1 mouse228


E-MTAB-5668:IL18KO APP/PS1 mouse279

characteristic: External Id

text: unspecified

text: public

text: E-MTAB-5668:IL18KO APP/PS1 mouse279

text: ArrayExpress

text: western European house mouse

text: IL18KO APP/PS1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: IL18KO APP/PS1 mouse279


E-MTAB-5668:IL18KO APP/PS1 mouse84

text: unspecified

text: public

text: E-MTAB-5668:IL18KO APP/PS1 mouse84

text: ArrayExpress

characteristic: broker name

text: western European house mouse

text: IL18KO APP/PS1

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: IL18KO APP/PS1 mouse84


E-MTAB-5668:IL18KO mouse145

text: unspecified

text: public

text: E-MTAB-5668:IL18KO mouse145

text: ArrayExpress

text: western European house mouse

characteristic: genotype

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: IL18KO mouse145


E-MTAB-5668:IL18KO mouse230

text: unspecified

text: public

text: E-MTAB-5668:IL18KO mouse230

text: ArrayExpress

text: western European house mouse

characteristic: individual

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: IL18KO mouse230


E-MTAB-5668:IL18KO mouse81

text: unspecified

characteristic: INSDC center name

text: public

text: E-MTAB-5668:IL18KO mouse81

text: ArrayExpress

text: western European house mouse

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: IL18KO mouse81


E-MTAB-5668:IL18KO mouse82

text: unspecified

characteristic: INSDC first public

text: public

text: E-MTAB-5668:IL18KO mouse82

text: ArrayExpress

text: western European house mouse

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: IL18KO mouse82


E-MTAB-5668:wt mouse20

text: unspecified

characteristic: INSDC last update

text: public

text: E-MTAB-5668:wt mouse20

text: ArrayExpress

text: western European house mouse

text: wild type genotype

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: wt mouse20


E-MTAB-5668:wt mouse21

text: unspecified

text: public

characteristic: INSDC status

text: E-MTAB-5668:wt mouse21

text: ArrayExpress

text: western European house mouse

text: wild type genotype

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: wt mouse21


E-MTAB-5668:wt mouse63

text: unspecified

text: public

characteristic: SRA accession

text: E-MTAB-5668:wt mouse63

text: ArrayExpress

text: western European house mouse

text: wild type genotype

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: wt mouse63


E-MTAB-5668:wt mouse64

text: unspecified

text: public

text: E-MTAB-5668:wt mouse64

text: ArrayExpress

text: western European house mouse

characteristic: common name

text: wild type genotype

text: Mus musculus domesticus

text: Mus musculus domesticus

text: Mus musculus domesticus

text: wt mouse64


text: TEL AVIV UNIVERSITY

text: public

tag: Namespace:TEL AVIV UNIVERSITY

text: wild emmer wheat

text: RNAseq from 20 time/tissue sample

characteristic: description

text: Triticum dicoccoides

text: Triticum dicoccoides

text: wild emmer wheat RNAseq


characteristic: ENA-CHECKLIST

text: UNIBE-IG

text: public

text: dog

text: Malinois - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Malinois


text: gut metagenome

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: gut metagenome

text: gut metagenome

characteristic: organism

text: gut metagenome

characteristic: subject id


text: gut metagenome

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

text: gut metagenome

text: gut metagenome

text: gut metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 001 (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 059 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 059 (replicate 2)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 047 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 047 (replicate 3)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 020 (replicate 3)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 039 (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 039 (replicate 2)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 039 (replicate 3)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 043 at 0-2 cm (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 043 at 2-4 cm (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 043 at 4-6 cm (replicate 1)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 043 at 0-2 cm (replicate 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 043 at 2-4 cm (replicate 2)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 043 at 4-6 cm (replicate 2)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 018 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 046 (replicate 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 034 (replicate 2)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 034 (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 036 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 010 (replicate 1)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 018 (replicate 2)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 046 (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 020 (replicate 2)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 007 (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 020 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 010 (replicate 3)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 2281 (replicate 2)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 2281 (replicate B2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 2281 (replicate A1)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 008 (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 008 (replicate 3)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 010 (replicate 2)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 2282 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 2282 (replicate 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 2282 (replicate 3)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 2289 (replicate 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 2289 (replicate 3)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 036 (replicate 2)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 004 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 005 (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 005 (replicate 2)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 014 (replicate 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 053 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 005 (replicate 3)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 2285 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 2285 (replicate 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 2287 (replicate 1)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 2291 (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 002 (replicate 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 009 (replicate 1)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 009 (replicate 2)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 014 (replicate 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 045 (replicate 1)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 045 (replicate 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 053 (replicate 2)


048_1_0-2 cm

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: 048_1_0-2 cm

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 048 at 0-2 cm (replicate 1)

characteristic: title


048_1_2-4 cm

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: 048_1_2-4 cm

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 048 at 2-4 cm (replicate 1)


048_1_4-6 cm

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 048_1_4-6 cm

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 048 at 4-6 cm (replicate 1)


048_2_0-2 cm

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: 048_2_0-2 cm

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 048 at 0-2 cm (replicate 2)

characteristic: title


048_2_2-4 cm

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: 048_2_2-4 cm

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: Sample from the station 048 at 2-4 cm (replicate 2)


048_2_4-6 cm

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 048_2_4-6 cm

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 048 at 4-6 cm (replicate 2)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: Sample from the station 047 (replicate 2)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: SIP Fraction 3 of sample from station 034 (Nitrate addition_13C)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 4 of sample from station 034 (Nitrate addition_13C)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 5 of sample from station 034 (Nitrate addition_13C)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: SIP Fraction 8 of sample from station 034 (Nitrate addition_13C)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 9 of sample from station 034 (Nitrate addition_13C)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 10 of sample from station 034 (Nitrate addition_13C)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: SIP Fraction 3 of sample from station 034 (Nitrate addition_12C)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 4 of sample from station 034 (Nitrate addition_12C)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 5 of sample from station 034 (Nitrate addition_12C)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: SIP Fraction 9 of sample from station 034 (Nitrate addition_12C)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 10 of sample from station 034 (Nitrate addition_12C)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 3 of sample from station 034 (Nitrate addition)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: SIP Fraction 4 of sample from station 034 (Nitrate addition)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 5 of sample from station 034 (Nitrate addition)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 9 of sample from station 034 (Nitrate addition)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: GENUS

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: pyrosequencing

characteristic: sequencing method

text: SIP Fraction 10 of sample from station 034 (Nitrate addition)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine benthic

text: coastal upwelling

text: sediment

text: Namibia

text: metagenome

text: sediment metagenome

characteristic: organism

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 3 of sample from station 034 (Sulfate addition_13C)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

text: public

characteristic: collection date

text: marine benthic

characteristic: environment (biome)

text: coastal upwelling

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Namibia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: GENUS

text: sediment metagenome

text: sediment

text: pyrosequencing

text: SIP Fraction 4 of sample from station 034 (Sulfate addition_13C)

characteristic: title