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characteristic: Submitter Id

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characteristic: Submitter Id

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characteristic: ENA-CHECKLIST

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characteristic: Submitter Id

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characteristic: Submitter Id

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characteristic: ENA-CHECKLIST

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characteristic: Submitter Id

text: Missing: Not provided

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characteristic: External Id

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text: qiita_sid_755:755.SSFB.L3.D5.21.06.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

text: True

text: biofilm metagenome

text: Glasgow University

text: True

text: True

characteristic: public

text: completed

text: filtration sand

characteristic: sample type

text: Sequenced (16S)

text: biofilm metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_755:755.SSFB.L3.D5.24.08.11.lane1.NoIndex.L001

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: True

text: urban biome

characteristic: env biome

text: biofilter

text: built environment

text: sand

text: True

characteristic: extracted DNA avail now

text: UK:Scotland:Glasgow

characteristic: geo loc name

text: True

characteristic: host subject id

characteristic: latitude

text: biofilm metagenome

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: qiita_sid_755:755.SSFB.L3.D5.26.07.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

text: True

characteristic: light intensity

characteristic: longitude

text: biofilm metagenome

characteristic: organism

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_755:755.SSFB.L3.D5.28.06.11.lane1.NoIndex.L001

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: True

text: urban biome

characteristic: env biome

text: biofilter

text: built environment

text: sand

text: True

characteristic: extracted DNA avail now

text: UK:Scotland:Glasgow

text: True

text: biofilm metagenome

text: Glasgow University

text: True

text: True

characteristic: public

text: completed

text: filtration sand

characteristic: sample type

text: Sequenced (16S)

text: biofilm metagenome

characteristic: title


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: qiita_sid_755:755.SSFB.L3.D5.31.05.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

characteristic: geo loc name

text: True

characteristic: host subject id

characteristic: latitude

text: biofilm metagenome

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_755:755.SSFB.L3.D50.06.07.11.lane1.NoIndex.L001

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: True

text: urban biome

characteristic: env biome

text: biofilter

text: built environment

text: sand

text: True

characteristic: extracted DNA avail now

text: UK:Scotland:Glasgow

text: True

characteristic: light intensity

characteristic: longitude

text: biofilm metagenome

characteristic: organism

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: qiita_sid_755:755.SSFB.L3.D50.07.06.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

text: True

text: biofilm metagenome

text: Glasgow University

text: True

text: True

characteristic: public

text: completed

text: filtration sand

characteristic: sample type

text: Sequenced (16S)

text: biofilm metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_755:755.SSFB.L3.D50.10.05.11.lane1.NoIndex.L001

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: True

text: urban biome

characteristic: env biome

text: biofilter

text: built environment

text: sand

text: True

characteristic: extracted DNA avail now

text: UK:Scotland:Glasgow

characteristic: geo loc name

text: True

characteristic: host subject id

characteristic: latitude

text: biofilm metagenome

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: qiita_sid_755:755.SSFB.L3.D50.12.07.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

text: True

characteristic: light intensity

characteristic: longitude

text: biofilm metagenome

characteristic: organism

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_755:755.SSFB.L3.D50.14.06.11.lane1.NoIndex.L001

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: samples of sand from slow_sand filter water purification system

text: Missing: Not provided

text: Missing: Not provided

text: True

text: urban biome

characteristic: env biome

text: biofilter

text: built environment

text: sand

text: True

characteristic: extracted DNA avail now

text: UK:Scotland:Glasgow

text: True

text: biofilm metagenome

text: Glasgow University

text: True

text: True

characteristic: public

text: completed

text: filtration sand

characteristic: sample type

text: Sequenced (16S)

text: biofilm metagenome

characteristic: title


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: qiita_sid_755:755.SSFB.L3.D50.17.05.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

characteristic: geo loc name

text: True

characteristic: host subject id

characteristic: latitude

text: biofilm metagenome

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome

text: Temporal and spatial variation of samples from a slow sand filter water purification system


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_755:755.SSFB.L3.D50.18.10.11.lane1.NoIndex.L001

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: True

text: urban biome

characteristic: env biome

text: biofilter

text: built environment

text: sand

text: True

characteristic: extracted DNA avail now

text: UK:Scotland:Glasgow

text: True

characteristic: light intensity

characteristic: longitude

text: biofilm metagenome

characteristic: organism

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: qiita_sid_755:755.SSFB.L3.D50.19.07.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

text: True

text: biofilm metagenome

text: Glasgow University

text: True

text: True

characteristic: public

text: completed

text: filtration sand

characteristic: sample type

text: Sequenced (16S)

text: biofilm metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_755:755.SSFB.L3.D50.20.09.11.lane1.NoIndex.L001

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: True

text: urban biome

characteristic: env biome

text: biofilter

text: built environment

text: sand

text: True

characteristic: extracted DNA avail now

text: UK:Scotland:Glasgow

characteristic: geo loc name

text: True

characteristic: host subject id

characteristic: latitude

text: biofilm metagenome

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: qiita_sid_755:755.SSFB.L3.D50.21.06.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

text: True

characteristic: light intensity

characteristic: longitude

text: biofilm metagenome

characteristic: organism

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_755:755.SSFB.L3.D50.24.08.11.lane1.NoIndex.L001

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: True

text: urban biome

characteristic: env biome

text: biofilter

text: built environment

text: sand

text: True

characteristic: extracted DNA avail now

text: UK:Scotland:Glasgow

text: True

text: biofilm metagenome

text: Glasgow University

text: True

text: True

characteristic: public

text: completed

text: filtration sand

characteristic: sample type

text: Sequenced (16S)

text: biofilm metagenome

characteristic: title


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: qiita_sid_755:755.SSFB.L3.D50.26.07.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

characteristic: geo loc name

text: True

characteristic: host subject id

characteristic: latitude

text: biofilm metagenome

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_755:755.SSFB.L3.D50.28.06.11.lane1.NoIndex.L001

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: True

text: urban biome

characteristic: env biome

text: biofilter

text: built environment

text: sand

text: True

characteristic: extracted DNA avail now

text: UK:Scotland:Glasgow

text: True

characteristic: light intensity

characteristic: longitude

text: biofilm metagenome

characteristic: organism

text: Glasgow University

text: True

text: True

text: completed

text: filtration sand

text: Sequenced (16S)

text: biofilm metagenome


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: qiita_sid_755:755.SSFB.L3.D50.31.05.11.lane1.NoIndex.L001

text: Missing: Not provided

characteristic: ammonium

characteristic: anonymized name

text: Missing: Not provided

characteristic: cod

characteristic: depth

characteristic: description

text: Missing: Not provided

text: Missing: Not provided

text: True

characteristic: elevation

text: urban biome

text: biofilter

characteristic: env feature

text: built environment

characteristic: env package

text: sand

text: True

text: UK:Scotland:Glasgow

text: True

text: biofilm metagenome

text: Glasgow University

text: True

text: True

characteristic: public

text: completed

text: filtration sand

characteristic: sample type

text: Sequenced (16S)

text: biofilm metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: QUB-IOP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Patient one, library 57

text: Homo sapiens

text: Homo sapiens

text: Blood

characteristic: tissue type

text: Patient 1, lib57


characteristic: External Id

text: QUB-IOP

characteristic: INSDC center name

text: public

text: human

text: Patient two, library 58

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Blood

text: Patient 2, lib58


text: QUB-IOP

text: public

text: human

text: Patient three, library 60

text: Homo sapiens

text: Homo sapiens

text: Blood

text: Patient 3, lib60


text: QUB-IOP

text: public

text: human

text: Patient four, library 59

text: Homo sapiens

text: Homo sapiens

text: Blood

text: Patient 4, lib59


text: QUB-IOP

text: public

text: human

text: Patient five, library 61

text: Homo sapiens

text: Homo sapiens

text: Blood

text: Patient 5, lib61


text: QUB-IOP

text: public

text: human

text: Patient six, library 62

text: Homo sapiens

text: Homo sapiens

text: Blood

text: Patient 6, lib62


text: QUB-IOP

text: public

text: human

text: Patient seven, library 63

text: Homo sapiens

text: Homo sapiens

text: Blood

text: Patient 7, lib63


text: QUB-IOP

text: public

text: human

text: Patient eight, library 64

text: Homo sapiens

text: Homo sapiens

text: Blood

text: Patient 8, lib64


text: QUB-IOP

text: public

text: human

text: AMD_pooled_mix. library 53

text: Homo sapiens

text: Homo sapiens

text: Blood

text: AMD_pooled_mix, lib53


C. riparius larval transcriptome 1

text: MAINZ

text: public

text: C. riparius larval transcriptome 1

text: Chironomus riparius

text: Chironomus riparius

text: Chironomus riparius transcriptome


C. riparius larval transcriptome 2

text: MAINZ

text: public

text: C. riparius larval transcriptome 2

text: Chironomus riparius

text: Chironomus riparius

text: Chironomus riparius transcriptome


C. riparius larval transcriptome 3

text: MAINZ

text: public

text: C. riparius larval transcriptome 3

text: Chironomus riparius

text: Chironomus riparius

text: Chironomus riparius transcriptome


C. riparius larval transcriptome 4

text: MAINZ

text: public

text: C. riparius larval transcriptome 4

text: Chironomus riparius

text: Chironomus riparius

text: Chironomus riparius transcriptome


text: INSERM UMR 1064

text: public

tag: Namespace:INSERM UMR 1064

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: CD8 T-cells from naive rats


text: INSERM UMR 1064

text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: CD8 T-cells from anti-CD45RC treated grafted rats


text: INSERM UMR 1064

text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: CD4 T-cells from naive rats


text: INSERM UMR 1064

text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: CD4 T-cells from anti-CD45RC treated grafted rats


text: QLD Health

text: public

tag: Namespace:QLD Health

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Clinical

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

tag: Namespace:The Blizard Institute Barts and The London School of Medicine and Dentistry, Queen Mary, University of London

text: ArrayExpress

characteristic: broker name

text: CD4-positive T cell

characteristic: cell type

text: house mouse

text: Protocols: CD4+CD44highCD62L- cells were isolated from Egr2/3 DKO mice by FACS GFP-Egr2 knockin (Egr2 Kin) and hCD2-Cre Egr2loxP/loxP Egr3-/- (Egr2/3 DKO) mice were infected intranasally with 2 x 105 PFU of vaccinia virus in 10ul of physiological saline. CD4 and CD8 T cells were isolated 7 days after infection RNA was isolated and purified using TRIzol reagent (Life Technologies) according to the manufacturer's instructions RNA from T cells was processed for directional mRNA-Seq library construction using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's protocol

text: hCD2-Cre / Egr2loxP/loxP / Egr3-/-

characteristic: genotype

text: vaccinia virus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: blood

characteristic: organism part

text: Mus musculus

characteristic: title


characteristic: External Id

text: The Blizard Institute Barts and The London School of Medicine and Dentistry, Queen Mary, University of London

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: CD4-positive T cell

text: house mouse

characteristic: common name

characteristic: description

text: hCD2-Cre / Egr2loxP/loxP / Egr3-/-

text: vaccinia virus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: blood

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: CD8-positive T cell

text: house mouse

text: Protocols: CD8+CD44highCD62L- cells were isolated from Egr2/3 DKO mice by FACS GFP-Egr2 knockin (Egr2 Kin) and hCD2-Cre Egr2loxP/loxP Egr3-/- (Egr2/3 DKO) mice were infected intranasally with 2 x 105 PFU of vaccinia virus in 10ul of physiological saline. CD4 and CD8 T cells were isolated 7 days after infection RNA was isolated and purified using TRIzol reagent (Life Technologies) according to the manufacturer's instructions RNA from T cells was processed for directional mRNA-Seq library construction using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's protocol

text: hCD2-Cre / Egr2loxP/loxP / Egr3-/-

text: vaccinia virus

text: Mus musculus

text: Mus musculus

text: blood

text: Mus musculus


characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: CD4-positive T cell

characteristic: cell type

text: house mouse

text: Protocols: CD4+CD44highCD62L-GFPEgr2high cells were isolated from Egr2 Kin mice by FACS GFP-Egr2 knockin (Egr2 Kin) and hCD2-Cre Egr2loxP/loxP Egr3-/- (Egr2/3 DKO) mice were infected intranasally with 2 x 105 PFU of vaccinia virus in 10ul of physiological saline. CD4 and CD8 T cells were isolated 7 days after infection RNA was isolated and purified using TRIzol reagent (Life Technologies) according to the manufacturer's instructions RNA from T cells was processed for directional mRNA-Seq library construction using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's protocol

text: Egr2-GFP knockin

text: vaccinia virus

text: Mus musculus

text: Mus musculus

text: blood

text: Egr2-GFP high

characteristic: phenotype

text: Mus musculus


text: public

text: ArrayExpress

text: CD8-positive T cell

text: house mouse

text: Protocols: CD8+CD44highCD62L-GFPEgr2high cells were isolated from Egr2 Kin mice by FACS GFP-Egr2 knockin (Egr2 Kin) and hCD2-Cre Egr2loxP/loxP Egr3-/- (Egr2/3 DKO) mice were infected intranasally with 2 x 105 PFU of vaccinia virus in 10ul of physiological saline. CD4 and CD8 T cells were isolated 7 days after infection RNA was isolated and purified using TRIzol reagent (Life Technologies) according to the manufacturer's instructions RNA from T cells was processed for directional mRNA-Seq library construction using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's protocol

text: Egr2-GFP knockin

characteristic: genotype

text: vaccinia virus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: blood

characteristic: organism part

text: Egr2-GFP high

text: Mus musculus

characteristic: title


characteristic: External Id

text: Alfred Wegener Institute

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Alfred Wegener Institute

text: Sporophytes of D. anceps Montagne were raised from gametophyte cultures which were established from spores of fertile sporophytes collected at Potter Cove (King George Island; South Shetland Islands, Antarctica 62°14’S-58°38’W, AWI culture numbers: 3064, 3084)

characteristic: culture collection

text: young sporophytes

characteristic: dev stage

text: Antarctica

characteristic: geographic location (country and/or sea)

text: Potter Cove

characteristic: geographic location (region and locality)

characteristic: lat lon

text: Desmarestia anceps

text: Desmarestia anceps

text: Desmarestia anceps transcriptomics


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Alfred Wegener Institute

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: young sporophytes

text: Antarctica

text: Potter Cove

text: Desmarestia anceps

characteristic: organism

text: Desmarestia anceps

text: Desmarestia anceps transcriptomics


text: KFU-TU

text: public

text: metagenome

text: metagenome

text: Sponge sample library

characteristic: title


characteristic: External Id

text: PASTEUR

text: public

text: Salmonella enterica subsp. enterica serovar Enteritidis


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


text: RJ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Denmark

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Escherichia coli

characteristic: isolate

text: Faeces

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli


text: Acinetobacter baumannii

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: strain


text: WEIZMANN INSTITUTE OF SCIENCE

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:WEIZMANN INSTITUTE OF SCIENCE

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Metagenomics

characteristic: title


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: IT

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

text: IT


characteristic: ENA last update

text: SC

text: public

characteristic: INSDC status

characteristic: anonymized name

characteristic: collection date

text: Klebsiella quasipneumoniae subsp. similipneumoniae

text: Pakistan

characteristic: country

text: diseased

characteristic: host status

text: Cerebrospinal fluid

characteristic: serovar

text: Homo sapiens

characteristic: specific host


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Pakistan

text: diseased

text: Blood

characteristic: isolation source

text: Homo sapiens

characteristic: strain


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Pakistan

text: diseased

text: Tracheal Secretions

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA last update

text: SC

text: public

characteristic: INSDC status

characteristic: anonymized name

characteristic: collection date

characteristic: common name

text: Pakistan

characteristic: country

text: diseased

text: Urine

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Pakistan

text: diseased

characteristic: host status

text: Endotracheal tube

characteristic: serovar

text: Homo sapiens

characteristic: specific host


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Pakistan

text: diseased

text: Plueral fluid

characteristic: isolation source

text: Homo sapiens

characteristic: strain


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF MANCHESTER

characteristic: Submitter Id

text: Sequence non specifically amplified from uncultured environmental sample using mammalian cytochrome B primers.

characteristic: description

text: Ralstonia pickettii

characteristic: organism

text: Ralstonia pickettii

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: DTU2016-197-PRJ1054-Escherichia-coil-2008-70-221-8_S13_L001

tag: Namespace:Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: imported food

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E.coli

characteristic: isolate

text: imported food

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-198-PRJ1054-Escherichia-coil-2008-70-231-9_S14_L001

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: DTU2016-199-PRJ1054-Escherichia-coil-2008-70-232-7_S15_L001

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: colistin resistance

characteristic: title


text: public

text: DTU2016-200-PRJ1054-Escherichia-coil-2008-70-328-5_S16_L001

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: imported food

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E.coli

characteristic: isolate

text: imported food

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-201-PRJ1054-Escherichia-coil-2009-70-65-10_S17_L001

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: DTU2016-202-PRJ1054-Escherichia-coil-2009-70-65-12_S18_L001

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: colistin resistance

characteristic: title


text: public

text: DTU2016-203-PRJ1054-Escherichia-coil-2009-70-66-6_S19_L001

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: imported food

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E.coli

characteristic: isolate

text: imported food

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-316-PRJ1054-Escherichia-coil-2009-70-66-18_S20

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: DTU2016-205-PRJ1054-Escherichia-coil-2009-70-66-19_S21_L001

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: colistin resistance

characteristic: title


text: public

text: DTU2016-206-PRJ1054-Escherichia-coil-2009-70-68-15_S22_L001

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: imported food

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E.coli

characteristic: isolate

text: imported food

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-207-PRJ1054-Escherichia-coil-2009-70-199-19_S23_L001

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: DTU2016-314-PRJ1054-Escherichia-coil-2009-70-252-12_S18

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: colistin resistance

characteristic: title


text: public

text: DTU2016-209-PRJ1054-Escherichia-coil-2009-70-255-7_S25_L001

text: DTU-GE

text: DTU

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: imported food

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E.coli

characteristic: isolate

text: imported food

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-210-PRJ1054-Escherichia-coil-2009-70-261-7_S26_L001

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA

text: public

text: Dr. J Noble, INRA Montpellier

characteristic: collected by

text: baker's yeast

characteristic: common name

text: Spore from the wine strain K1

characteristic: description

text: France

text: wine

characteristic: isolation source

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: yes

characteristic: spore

text: wine yeast

characteristic: title


characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Dr. J Noble, INRA Montpellier

text: baker's yeast

text: Spore from the wine strain D47

text: France

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: wine

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: yes

text: wine yeast


characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lallemand Inc

text: baker's yeast

text: Spore isolated from a wine strain, Italy

text: Canada

text: wine, Italy

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: yes

text: wine yeast


text: INRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Prof. D. Cavalieri, Firenze

text: baker's yeast

text: Spore F5 from the wine strain 1014, Italy (Duccio Cavalieri, spore F5)

text: Italy

text: wine

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: yes

text: wine yeast


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA

text: public

characteristic: Submitter Id

text: LDA Poligny, Jura, France

text: baker's yeast

text: Spore from a flor yeast isolated in Jura, France

text: France

text: flor

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: yes

text: flor yeast


text: INRA

text: public

text: Prof. A. Maraz, Budapest

characteristic: collected by

text: baker's yeast

characteristic: common name

text: Spore from a flor yeast isolated in Hungary

characteristic: description

text: Hungary

text: flor

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: yes

text: flor yeast


text: INRA

text: public

text: Dr. JL Legras, INRA Colmar, France

text: baker's yeast

text: Spore from the flor yeast GE7 isolated in Alsace, France (Jean-Luc Legras)

text: France

text: wine

characteristic: isolation source

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: yes

characteristic: spore

text: wine yeast


characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Prof. J C Garcia Mauricio, Cordoba

text: baker's yeast

text: Natural diploid flor yeast isolated in Cordoba, Spain

text: Spain

characteristic: geographic location (country and/or sea)

text: flor

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: no

text: flor yeast

characteristic: title


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: public

text: Prof. M. Budroni, Sassari

text: baker's yeast

text: Spore from a flor yeast isolated in Sardinia, Italy

text: Italy

characteristic: isolate

text: flor

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: yes

text: flor yeast


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Prof. JC Garcia Mauricio, Cordoba

text: baker's yeast

text: Spore from a flor yeast isolated in Cordoba, Spain

text: Spain

text: flor

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: yes

text: flor yeast


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA

text: public

characteristic: SRA accession

text: Prof. Anna Maraz, Budapest

text: baker's yeast

text: Natural flor yeast isolated in Hungary (C. Charpentier)

text: Hungary

text: flor

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: no

text: flor yeast


text: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark

text: public

text: DTU2016-211-PRJ1054-Escherichia-coil-2009-70-319-1_S1_L001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: imported food

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E.coli

text: imported food

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: DTU2016-212-PRJ1054-Escherichia-coil-2009-70-353-7_S2_L001

text: DTU-GE

text: DTU

characteristic: description

text: No

text: Denmark

characteristic: geographic location (country and/or sea)

text: imported food

text: Yes

text: E.coli

characteristic: isolate

text: imported food

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: colistin resistance

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-213-PRJ1054-Escherichia-coil-2009-70-355-6_S3_L001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


text: public

text: DTU2016-214-PRJ1054-Escherichia-coil-2009-70-361-16_S4_L001

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: imported food

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E.coli

text: imported food

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: DTU2016-215-PRJ1054-Escherichia-coil-2010-70-271-22_S5_L001

text: DTU-GE

text: DTU

characteristic: description

text: No

text: Denmark

characteristic: geographic location (country and/or sea)

text: imported food

text: Yes

text: E.coli

characteristic: isolate

text: imported food

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: colistin resistance

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-216-PRJ1054-Escherichia-coil-2010-70-405-25_S6_L001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


text: public

text: DTU2016-217-PRJ1054-Escherichia-coil-2010-70-405-28_S7_L001

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: imported food

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: E.coli

text: imported food

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

text: colistin resistance


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: DTU2016-218-PRJ1054-Escherichia-coil-2010-70-405-29_S8_L001

text: DTU-GE

text: DTU

characteristic: description

text: No

text: Denmark

characteristic: geographic location (country and/or sea)

text: imported food

text: Yes

text: E.coli

characteristic: isolate

text: imported food

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: colistin resistance

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-219-PRJ1054-Escherichia-coil-2010-70-405-30_S9_L001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Denmark

text: imported food

text: Yes

text: E.coli

text: imported food

text: Escherichia coli

text: Escherichia coli

text: colistin resistance