characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.648.ASO.PD6.D7

characteristic: Submitter Id

text: weeks

text: Susceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 02/22/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: Healthy

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Early Stage PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

characteristic: title

text: Missing: Not provided


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.649.WT.HC6.D14

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age units

text: Susceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: TRUE

characteristic: cohoused

text: 04/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Role of Gut Microbiota in Pathophysiology of Parkinson's Disease

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CA:Pasadena

text: Not provided

text: Mus musculus

text: Missing: Not provided

text: adult

text: Missing: Not provided

text: mouse gut metagenome

text: PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

text: mouse gut metagenome

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.649.WT.HC6.D7

characteristic: Submitter Id

text: years

text: Missing: Not provided

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Restricted access

text: Missing: Not provided

text: Missing: Not provided

text: PD

text: TRUE

text: PD

text: urban biome

text: human-associated habitat

text: human-gut

characteristic: env package

text: feces

text: Missing: Not provided

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

characteristic: height

text: Missing: Not provided

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: Missing: Not provided

text: Missing: Not provided

text: UCSDMI

text: TRUE

text: Caucasian

characteristic: race

text: stool

characteristic: sample type

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.650.ASO.PD6.D14

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age units

text: Susceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: Single

text: FALSE

characteristic: cohoused

text: 04/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CA:Pasadena

text: Not provided

text: Mus musculus

text: Missing: Not provided

text: adult

text: Missing: Not provided

text: mouse gut metagenome

text: PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

text: mouse gut metagenome

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.650.ASO.PD6.D49

characteristic: Submitter Id

text: weeks

text: Nonsusceptible, PD

text: Not provided

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Single

text: FALSE

text: 02/29/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

characteristic: genotype

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

characteristic: height

text: Missing: Not provided

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

characteristic: sample type

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

characteristic: sex

characteristic: title

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.650.ASO.PD6.D7

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: Missing: Not provided

characteristic: anonymized name

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Missing: Not provided

characteristic: cage id

text: Missing: Not provided

text: Missing: Not provided

characteristic: cohoused

text: Missing: Restricted access

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Healthy

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

text: feces

text: Missing: Not provided

text: Missing: Not provided

text: USA:CA:Pasadena

text: Not provided

text: Missing: Not provided

text: Homo sapiens

text: Missing: Not provided

text: adult

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: UCSDMI

text: TRUE

text: Caucasian

text: stool

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.651.ASO.HC6.D14

characteristic: Submitter Id

text: weeks

text: Nonsusceptible, PD

text: Not provided

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Single

text: FALSE

text: 04/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: PD

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

characteristic: genotype

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

characteristic: height

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.651.ASO.HC6.D7

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: Missing: Not provided

characteristic: anonymized name

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Missing: Not provided

characteristic: cage id

text: Missing: Not provided

text: Missing: Not provided

characteristic: cohoused

text: Missing: Restricted access

text: Before

text: Missing: Not provided

characteristic: description

characteristic: disease duration

text: PD

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

text: feces

text: Missing: Not provided

text: Missing: Not provided

text: USA:CA:Pasadena

text: Not provided

text: Missing: Not provided

text: Homo sapiens

text: adult

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Ranitidine 150mg

text: Missing: Not provided

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: UCSDMI

text: TRUE

text: Caucasian

text: stool

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.652.ASO.HC6.D14

characteristic: Submitter Id

text: weeks

text: Susceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 04/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: Healthy

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

characteristic: genotype

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

characteristic: height

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Early Stage PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.652.ASO.HC6.D7

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: Missing: Not provided

characteristic: anonymized name

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Missing: Not provided

characteristic: cage id

text: Missing: Not provided

text: Missing: Not provided

characteristic: cohoused

text: Missing: Restricted access

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Healthy

characteristic: disease status

text: TRUE

text: Healthy

characteristic: donor status

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

text: feces

text: Missing: Not provided

text: Missing: Not provided

text: USA:CA:Pasadena

text: Not provided

text: Missing: Not provided

text: Homo sapiens

text: Missing: Not provided

text: adult

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: UCSDMI

text: TRUE

text: Caucasian

text: stool

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: female

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.653.ASO.HC6.D14

characteristic: Submitter Id

text: weeks

text: Susceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: TRUE

text: 04/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: Healthy

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

characteristic: genotype

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

characteristic: height

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Early Stage PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.653.ASO.HC6.D7

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age units

text: Susceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: Single

text: FALSE

characteristic: cohoused

text: 02/22/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

text: Not provided

text: Missing: Not provided

text: Mus musculus

text: Missing: Not provided

text: adult

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

text: PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.654.ASO.HC6.D14

characteristic: Submitter Id

text: weeks

text: Susceptible, Healthy

text: Not provided

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Single

text: FALSE

text: 04/04/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: Healthy

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

characteristic: genotype

text: USA:CA:Pasadena

characteristic: geo loc name

text: Not provided

characteristic: height

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Missing: Not provided

characteristic: medications

text: mouse gut metagenome

characteristic: organism

text: Early Stage PD

text: UCSDMI

text: TRUE

text: Missing: Not provided

characteristic: race

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10483:10483.recip.654.ASO.HC6.D7

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age units

text: Nonsusceptible, PD

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: cage id

text: Single

text: FALSE

characteristic: cohoused

text: 02/22/2016 10:00

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: description

text: Missing: Not provided

characteristic: disease duration

text: Missing: Not provided

characteristic: disease status

text: TRUE

text: PD

characteristic: donor status

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: Missing: Not provided

text: USA:CA:Pasadena

text: Not provided

text: Missing: Not provided

text: Mus musculus

text: Missing: Not provided

text: adult

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: mouse gut metagenome

text: Intermediate

text: UCSDMI

text: TRUE

text: Missing: Not provided

text: stool

text: mouse gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: male

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Actinomyces sp. FC2

characteristic: organism

text: Actinomyces sp. FC2

characteristic: strain

text: Actinomyces urinae genome

characteristic: title


text: URMITE

text: public

text: Arcanobacterium sp. Marseille-P3248

text: Arcanobacterium sp. Marseille-P3248

text: Arcanobacterium urinomassiliense genome


text: PHE

text: public

text: emm-typing-tool validation set

characteristic: description

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)

type: has member


text: Bacteria

characteristic: ArrayExpress-CellType

text: Whole cell

characteristic: ArrayExpress-OrganismPart

text: Bifidobacterium longum subsp. Infantis

characteristic: ArrayExpress-Species

text: B. longum (infantis) V3A1

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL Control 1 lag phase

characteristic: sample description

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

characteristic: organism

text: B. infantis CDIRM 500mL Control 1 log phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1

characteristic: strain

characteristic: title


text: Bacteria

characteristic: ArrayExpress-CellType

text: Whole cell

characteristic: ArrayExpress-OrganismPart

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

characteristic: common name

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL Control 1 stationary phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

characteristic: ArrayExpress-Species

text: B. longum (infantis) V3A1

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL Control 2 lag phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL Control 2 log phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL Control 2 stationary phase

characteristic: sample description

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL Control 3 lag phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

text: public

characteristic: Submitter Id

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

characteristic: organism

text: B. infantis CDIRM 500mL Control 3 log phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1

characteristic: strain


text: Bacteria

characteristic: ArrayExpress-CellType

text: Whole cell

characteristic: ArrayExpress-OrganismPart

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL Control 3 stationary phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1

characteristic: title


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

characteristic: ArrayExpress-Species

text: B. longum (infantis) V3A1

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

characteristic: common name

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM 1 lag phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM 1 log phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM 1 stationary phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM 2 lag phase

characteristic: sample description

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

characteristic: organism

text: B. infantis CDIRM 500mL 2,2'Bip 100uM 2 log phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

characteristic: ArrayExpress-CellType

text: Whole cell

characteristic: ArrayExpress-OrganismPart

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM 2 stationary phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1

characteristic: strain


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

characteristic: ArrayExpress-Species

text: B. longum (infantis) V3A1

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM 3 lag phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1

characteristic: title


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

characteristic: common name

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM 3 log phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM 3 stationary phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM Fe 50uM 1 lag phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM Fe 50uM 1 log phase

characteristic: sample description

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

characteristic: ArrayExpress-CellType

text: Whole cell

characteristic: ArrayExpress-OrganismPart

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

characteristic: organism

text: B. infantis CDIRM 500mL 2,2'Bip 100uM Fe 50uM 1 stationary phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

characteristic: ArrayExpress-Species

text: B. longum (infantis) V3A1

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM Fe 50uM 2 lag phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1

characteristic: strain


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM Fe 50uM 2 log phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1

characteristic: title


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

characteristic: common name

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM Fe 50uM 2 stationary phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM Fe 50uM 3 lag phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

text: Whole cell

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM Fe 50uM 3 log phase

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: Bacteria

characteristic: ArrayExpress-CellType

text: Whole cell

characteristic: ArrayExpress-OrganismPart

text: Bifidobacterium longum subsp. Infantis

text: B. longum (infantis) V3A1

text: SC

text: public

text: Bifidobacterium longum subsp. Infantis

text: Bifidobacterium longum subsp. infantis

text: B. infantis CDIRM 500mL 2,2'Bip 100uM Fe 50uM 3 stationary phase

characteristic: sample description

text: Bifidobacterium longum subsp. infantis

text: B. longum (infantis) V3A1


text: CHALMERS UNIVERSITY OF TECHNOLOGY

text: public

tag: Namespace:CHALMERS UNIVERSITY OF TECHNOLOGY

text: Genome assembly

characteristic: description

text: Malbranchea cinnamomea

characteristic: organism

text: Malbranchea cinnamomea

text: Malbrachea cinnamomea


characteristic: ENA-CHECKLIST

text: UPSC

text: public

text: Dragon spruce

text: Voucher Liujq-09xz-lzt-190 Lanzhou University Botanical Garden

text: Picea asperata

text: Picea asperata

text: Picea asperata collected from a natural population Sichuan China near 33N 103E


characteristic: ENA-FIRST-PUBLIC

text: UPSC

text: public

text: Dragon spruce

text: Voucher 19800139 The Arboretum at Horsholm; cultivated from germplasm collected at 31N 107E

text: Picea asperata

text: Picea asperata

text: Picea asperata cultivated at The Arboretum at Horsholm University of Copenhagen Denmark


text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

characteristic: day

text: Metagenome

characteristic: reactor

text: Metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


text: CENTRE FOR GENOMIC RESEARCH (CGR)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CENTRE FOR GENOMIC RESEARCH (CGR)

characteristic: Submitter Id

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: ArrayExpress

characteristic: broker name

text: 46c ES

characteristic: cell line

text: house mouse

text: Protocols: 46c mouse ES cells were grown feeder-free on 0.2% gelatinized cell culture plates in 2i-media. The 2i-media contained DMEM/F12 media for SILAC (Pierce, 88215) supplemented 100 mg/ml of Lysine (Sigma, L8662), 100 mg/ml of Arginine (Sigma, A6969) and 100 mg/ml of Proline (Sigma, P5607), 100 microM MEM non-essential amino acids (Life technologies, 11140-050), 1xGlutamax (Life technologies, 35050-061), 1x penicillin and streptomycin (Life technologies, 15140-122), 100 microM of 2-mercaptoethanol (Sigma, M7522), 0.5mg/ml of BSA (Sigma, A3059), 200ng/ml of LIF (EMBL, protein expression core facility), 1microM of PD0325901(Reagents Direct, 39-C68), 3 microM of CHIR99021 (Reagents Direct, 27-H76). The cells were cultured using the 2i-media at least for 10 days, and passaged 4 times. The knock down (KD) was carried out by lentiviral transduction of : non-targeting shRNA, shTrim24 (TRCN0000088518), shTrp53 (TRCN0000310844), and the mixture of the last two shRNAs. For each knock down, 3 independent transductions was perfomed. For the details of virus production and infection please refer to PMID: 23260666. 48 hours after the viral treatment of the mouse ES cells, the cells were lysed, and RNA was extracted to be analyzed by qPCR and mRNA-seq RNA was extracted by Qiagen kit (RNeasy mini kit) mRNA-Seq libraries (from polyA+ cytoplasmic RNA) were created according to the standard Illumina TruSeq protocol.

characteristic: description

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: ArrayExpress

text: 46c ES

text: house mouse

characteristic: common name

text: Trim24/Trp53 Knock Down

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


text: EMBL

characteristic: INSDC center name

text: public

text: ArrayExpress

text: 46c ES

text: house mouse

text: Trim24 Knock Down

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: EMBL

characteristic: INSDC first public

text: public

text: ArrayExpress

text: 46c ES

text: house mouse

text: Trp53 Knock Down

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: INSDC last update

text: public

tag: Namespace:DEPARTMENT OF MOLECULAR MEDICINE AND MEDICAL BIOTECHNOLOGY

text: human

text: control

text: Homo sapiens

text: Homo sapiens

text: Subgingival tissue

characteristic: tissue type


text: DEPARTMENT OF MOLECULAR MEDICINE AND MEDICAL BIOTECHNOLOGY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: control

text: Homo sapiens

text: Homo sapiens

text: Subgingival tissue


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: Subgingival tissue


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN, DEPARTMENT OF BIOLOGY

text: Xanthomonas retroflexus

text: Xanthomonas retroflexus

text: Draft Genome of Xanthomonas retroflexus strain Sp953


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: cauline leaf

text: Arabidopsis organ methylation catalog


text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: cauline leaf

text: Arabidopsis organ methylation catalog


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: closed flower

text: Arabidopsis organ methylation catalog


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis organ methylation catalog


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: open flower

text: Arabidopsis organ methylation catalog


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis organ methylation catalog


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: stem

text: Arabidopsis organ methylation catalog


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: silique

text: Arabidopsis organ methylation catalog


text: UPSC

text: public

text: Qinghai spruce

text: Voucher 827 Lanzhou University Botanical Garden

text: Picea crassifolia

text: Picea crassifolia

text: Picea crassifolia collected from a natural population Inner Mongolia China near 39N 106E


text: UPSC

text: public

text: Qinghai spruce

text: Voucher 818 Lanzhou University Botanical Garden

text: Picea crassifolia

text: Picea crassifolia

text: Picea crassifolia collected from a natural population Qinghai China near 34N 98E


text: public

tag: Namespace:Mainz University Medical Center Institute for Medical Microbiology and Hygiene

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Splenocytes were isolated and sorted for CD3 CD19 CD45 CD11c MHC-II to high purity. Fixed chromatin from isolated cells was sheared and precipitated for H3K4me3 and H3K27me3 Libraries were prepared by the Deep Sequencing Unit at the MPI in Freiburg, Germany

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: germ-free C57BL/6

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Mainz University Medical Center Institute for Medical Microbiology and Hygiene

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus

text: female

text: germ-free C57BL/6


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

text: IFNAR1 knockout

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: female


characteristic: ENA-FIRST-PUBLIC

text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


Mesorhizobium amorphae MA3701

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Mesorhizobium amorphae MA3701

tag: Namespace:Tropical Infectious Diseases Research and Education Centre

text: Mesorhizobium amorphae MA370

characteristic: description

text: Mesorhizobium amorphae

text: Mesorhizobium amorphae

text: Mesorhizobium amorphae MA370


text: Institute for Molecular Biosciences

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Institute for Molecular Biosciences

text: BRAEMBL

characteristic: broker name

characteristic: collection date

text: Nucleic acid sequences and peptide sequences from venom-gland preparations from the spider Badumna Sp.

text: Australia

characteristic: geographic location (country and/or sea)

text: Regency Downs

characteristic: geographic location (region and locality)

characteristic: lat lon

characteristic: library reads sequenced

text: Badumna sp. SGP-2016

characteristic: organism

text: Aerobe

characteristic: relationship to oxygen

text: All spiders used for complementary DNA (cDNA) library construction were first anesthetized using CO2, frozen at -80°C for 10 min, and then dissected at 4°C. To access the venom gland, the chelicerae were first removed from the base of the structure (towards the carapace). Once separated, each chelicera was individually cut from the ventral side up to the base of the fang in order to approach the venom gland from underneath. The cheliceral muscle that surrounds the venom gland was detached to expose the isolated venom gland. Dissected venom glands were placed immediately in TRIzol® reagent (Invitrogen) to be processed.

characteristic: sample material processing

text: Badumna sp. SGP-2016

text: Badumna sp.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute for Molecular Biosciences

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: BRAEMBL

text: Nucleic acid sequences and peptide sequences from venom-gland preparations from the spider Deinopis subrufa

text: Australia

text: Mount Coot-Tha

text: Deinopis subrufa

text: Aerobe

text: Deinopis subrufa

text: Deinopis subrufa

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITI PUTRA MALAYSIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITI PUTRA MALAYSIA

text: African oil palm

characteristic: common name

text: Leaf transcriptome from untreated oil palms

characteristic: description

text: Elaeis guineensis

text: Elaeis guineensis


text: UNIVERSITI PUTRA MALAYSIA

text: public

text: African oil palm

text: Leaf transcriptome from oil palms infected by Ganoderma boninense

text: Elaeis guineensis

text: Elaeis guineensis


CECT 7868

text: UVEG

text: public

text: CECT 7868

characteristic: collection date

text: seagrass bed sediment

characteristic: environment (biome)

text: Non-rhizosphere sediment samples

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Taiwan

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Vibrio aerogenes CECT 7868

text: Whole genome sequencing of Vibrio aerogenes CECT 7868T, type strain

characteristic: project name

text: Vibrio aerogenes CECT 7868

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method

text: CECT 7868

characteristic: strain

text: Vibrio aerogenes CECT 7868T


text: Escherichia coli

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title


text: Mycobacterium abscessus

text: SC

text: public

text: Mycobacterium abscessus

characteristic: common name

text: Mycobacterium abscessus

text: Mycobacterium abscessus


text: public

tag: Namespace:School of Computing Science, Newcastle University

characteristic: collection date

text: Seawater

characteristic: environment (biome)

text: Seawater

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: North Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: NUFEB Collaborations

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: North Sea - 1N

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Computing Science, Newcastle University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Seawater

text: Seawater

text: Water

text: North Sea

text: metagenome

text: metagenome

text: NUFEB Collaborations

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: North Sea - 2S

text: water


text: UNIBE-IG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: horse

characteristic: common name

text: Equus caballus

characteristic: organism

text: Equus caballus

text: Vollblut - female

characteristic: title


text: public

tag: Namespace:Ludwig Cancer Research and Institute of medical biochemistry and microbiology, SciLife lab, Uppsala University, Sweden.

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: Human triple negative breast cancer cells Hs578T were cultured in DMEM supplemented with 10% fetal bovine serum in the presence of 1% penicillin-streptomycin. Hs578T cells were transfected with CRISPR Cas9 and HDR plasmids obtained from Santa Cruz Biotech. targeting the human ZEB1 (Santa Cruz Biotech., sc-423302 and sc-423302-HDR) gene. Two days post-transfection, cells were selected with puromycin and single cell colonies were picked and cultured. The obtained clones were then validated using western blotting and the deleted sequences were validated using conventional PCR amplification and sequencing of DNA fragments spanning the sites of guide sequences employed in the CRISPR Cas9 vector system. The TRIzol extraction protocol was used to extract total RNA from both wild type clones and knockout clones using TRIzol reagent from Ambion/Life Technologies and based on the manufacturer’s protocol. Total RNA for Ampliseq was extracted with 3 biological replicates and 3 technical replicates as described above. Fifty ng of RNA was reverse transcribed to cDNA using the Ion AmpliSeq™ Transcriptome Human Gene Expression Kit Preparation protocol (Revision A.0, Life Technologies). The acquired cDNA was amplified using Ion AmpliSeq™ Transcriptome Human Gene Expression core panel (Life Technologies) and the primer sequences were then partially digested. Then, DNA adaptors (Ion P1 Adaptor and Ion Xpress™ Barcode Adaptor, Life Technologies) were ligated to the amplicons. Adaptor ligated amplicons were purified using the Agencourt® AMPure® XP reagent (Beckman Coulter) and eluted in amplification mix (Platinum® PCR SuperMix High Fidelity and Library Amplification Primer Mix, Life Technologies) and amplified. Size-selection and purification was conducted using Agencourt® AMPure® XP reagent (Beckman Coulter). The amplicons were quantified using the Fragment AnalyzerTM instrument (Advanced Analytical Technologies, INC.) with DNF-474 High Sensitivity NGS Fragment Analysis Kit (Advanced Analytical Technologies, INC.). Samples were then pooled, six or less per pool, followed by emulsion PCR on either the Ion OneTouch™ 2 System using the Ion PI™ Hi-Q™ OT2 Kit (Life Technologies), or on the Ion Chef™ System using the Ion PI Hi-Q Chef Kit (Life Technologies). The pooled samples were loaded on Ion PI™ v3 chips and sequenced on the Ion Proton™ System using the Ion PI™ Hi-Q Sequencing 200 Kit chemistry (200 bp read length, Life Technologies). Mean read length was 114 bp. Acquired reads were then aligned to the hg19 AmpliSeq Transcriptome ERCC v1 using the Torrent Mapping and Alignment Program (TMAP) with default settings. Differentially expressed genes were called requiring a mean log2-fold change over the replicates of 2 and a q-value < 0.05 (one-sided t-test with False Discovery Rate (FDR) adjustment).

characteristic: description

text: breast carcinoma

characteristic: disease

text: wild type

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ludwig Cancer Research and Institute of medical biochemistry and microbiology, SciLife lab, Uppsala University, Sweden.

text: public

text: ArrayExpress

text: epithelial cell

text: human

text: breast carcinoma

text: wild type

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: epithelial cell

text: human

text: breast carcinoma

text: gene knock out

characteristic: genetic modification

text: ZEB1 knockout

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


Lactobacillus plantarum A6

text: UNIVERSITY OF TORONTO

text: public

characteristic: SRA accession

text: Lactobacillus plantarum A6

tag: Namespace:UNIVERSITY OF TORONTO

characteristic: Submitter Id

text: The genomic and transcriptomic basis of nutritional potential of Lactobacillus plantarum A6 in a food matrix

text: Lactobacillus plantarum

characteristic: organism

text: Lactobacillus plantarum


text: dfdong

text: public

text: house mouse

characteristic: common name

text: IFNG WT

text: Mus musculus

text: Mus musculus

text: IFNG WT

characteristic: title


text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


text: Proteus vulgaris

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Proteus vulgaris

text: Proteus vulgaris

text: Proteus vulgaris

characteristic: strain


text: Legionella anisa

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Legionella anisa

text: Legionella anisa

text: Legionella anisa


text: Vibrio furnissii

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Vibrio furnissii

characteristic: common name

text: Vibrio furnissii

characteristic: organism

text: Vibrio furnissii

characteristic: title


text: UNIVERSITY OF ST ANDREWS

text: public

tag: Namespace:UNIVERSITY OF ST ANDREWS

text: total RNA

characteristic: bio material

text: goldfish

text: Skeletal muscle transcriptome of goldfish acclimate to 25 and 8C for a period of 4 weeks. Samples were pair end sequenced in Miseq v3 platform

characteristic: description

text: Carassius auratus

text: Carassius auratus

text: Fast skeletal muscle

characteristic: tissue type

text: Goldfish transcriptome


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

text: public

text: UNIBO

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: production environment

characteristic: isolation source non-host-associated

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Potential persistent strains of a meat processing plant


E-MTAB-5241:Hs Input minus

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5241:Hs Input minus

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Human triple negative breast cancer cells Hs578T were cultured in DMEM supplemented with 10% fetal bovine serum in the presence of 1% penicillin-streptomycin. Cells were starved for 18 h in DMEM with 0% fetal bovine serum and stimulated with TGFβ1 (5 ng/ml final concentration). Human triple negative breast cancer cells Hs578T were cultured in DMEM supplemented with 10% fetal bovine serum in the presence of 1% penicillin-streptomycin. Cells were starved for 18 h in DMEM with 0% fetal bovine serum and stimulated with TGFβ1 (5 ng/ml final concentration). Cells were cultured using standard conditions and then cells were fixed with 2% formaldehyde for 10 min at 37°C. Immediately, formaldehyde was removed and cells were washed with ice-cold PBS twice. Cells were scraped in PBS and spun down at 4,000 rpm for 5 min Supernatant was removed and cells were lysed with SDS lysis buffer (1% SDS, 10 mM EDTA, 50 mM Tris-HCl pH 8.1) with added protease inhibitor cocktail (Roche diagnostics) for 20 min on ice. Lysed cells were then sonicated for obtaining an average fragment size of 250 bp. Input of about 10 % was aliquoted and frozen at -20°C. The remaining lysate was then diluted 10 times with ChIP dilution buffer (0.01% SDS, 1.1% Triton-X 100, 1.2 mM EDTA, 16.7 mM Tris-HCl pH 8.1, 167 mM NaCl) with protease inhibitors, and proceeded for immnoprecipitation using anti-ZEB1 (Santa Cruz Biotech. SC-25388) antibodies or a rabbit antiserum, overnight at 4°C. Protein A dynabeads (Novex, 10001D) were added to this lysate and incubated for 2 h at 4°C. Beads were then washed once with low salt buffer (0.1% SDS, 1% Triton-X 100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 150 mM NaCl), once with high salt buffer (0.1% SDS, 1% Triton-X 100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 500 mM NaCl), once with lithium chloride wash buffer (0.25M LiCl, 1% IGEPAL, 1% deoxycholic acid, 1 mM EDTA, 10 mM Tris-HCl pH 8.1), and then twice with TE buffer (10 mM Tris-HCl pH 8.0, 1 mM EDTA pH 8.0). After these series of washing steps, the beads and the Input samples were then re-suspended in elution buffer (1% SDS, 1 mM NaHCO3) and mixed up and down for 30 min and left for de-crosslinking in the presence of 0.2 mM NaCl at 65°C overnight. The eluted chromatin was then subjected to proteinase K digestion followed by phenol-chloroform extraction. The respective input was then used to normalize the DNA in each sample that was subjected to chromatin immunoprecipitation. The extracted DNA was then subjected to either PCR quantification or sequencing experiments. ChIP DNA was obtained with 4 biological and technical replicates and pooled for sequencing. The quality of the ChIP DNA obtained was analyzed with a bioanalyzer. The DNA obtained from Input and ChIP were sheared by sonication using the Covaris S2 instrument (Covaris, Inc.). ChIP-seq libraries were constructed from the sheared samples using AB Library Builder System (Life Technologies), followed by amplification and ‘‘Wildfire” conversion (massive parallel monoclonal template generation, www.thermofisher.com), according to the manufacturer’s protocols. Sequencing was performed at 75 bp read length on the SOLiD 5500W system (Life Technologies). Library preparation was performed using library kit (5500 SOLiD Library Builder Fragment Core Kit + 5500W Conversion Primer Kit), after which sequencing was performed using the sequencing machine (SOLiD 5500W) at sequencing unit (SOLiD5500W FlowChip).

text: breast carcinoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Hs Input minus

characteristic: title


E-MTAB-5241:Hs Input plus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5241:Hs Input plus

text: ArrayExpress

text: epithelial cell

text: human

text: Protocols: Human triple negative breast cancer cells Hs578T were cultured in DMEM supplemented with 10% fetal bovine serum in the presence of 1% penicillin-streptomycin. Cells were starved for 18 h in DMEM with 0% fetal bovine serum and stimulated with TGFβ1 (5 ng/ml final concentration). Cells were cultured using standard conditions and then cells were fixed with 2% formaldehyde for 10 min at 37°C. Immediately, formaldehyde was removed and cells were washed with ice-cold PBS twice. Cells were scraped in PBS and spun down at 4,000 rpm for 5 min Supernatant was removed and cells were lysed with SDS lysis buffer (1% SDS, 10 mM EDTA, 50 mM Tris-HCl pH 8.1) with added protease inhibitor cocktail (Roche diagnostics) for 20 min on ice. Lysed cells were then sonicated for obtaining an average fragment size of 250 bp. Input of about 10 % was aliquoted and frozen at -20°C. The remaining lysate was then diluted 10 times with ChIP dilution buffer (0.01% SDS, 1.1% Triton-X 100, 1.2 mM EDTA, 16.7 mM Tris-HCl pH 8.1, 167 mM NaCl) with protease inhibitors, and proceeded for immnoprecipitation using anti-ZEB1 (Santa Cruz Biotech. SC-25388) antibodies or a rabbit antiserum, overnight at 4°C. Protein A dynabeads (Novex, 10001D) were added to this lysate and incubated for 2 h at 4°C. Beads were then washed once with low salt buffer (0.1% SDS, 1% Triton-X 100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 150 mM NaCl), once with high salt buffer (0.1% SDS, 1% Triton-X 100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 500 mM NaCl), once with lithium chloride wash buffer (0.25M LiCl, 1% IGEPAL, 1% deoxycholic acid, 1 mM EDTA, 10 mM Tris-HCl pH 8.1), and then twice with TE buffer (10 mM Tris-HCl pH 8.0, 1 mM EDTA pH 8.0). After these series of washing steps, the beads and the Input samples were then re-suspended in elution buffer (1% SDS, 1 mM NaHCO3) and mixed up and down for 30 min and left for de-crosslinking in the presence of 0.2 mM NaCl at 65°C overnight. The eluted chromatin was then subjected to proteinase K digestion followed by phenol-chloroform extraction. The respective input was then used to normalize the DNA in each sample that was subjected to chromatin immunoprecipitation. The extracted DNA was then subjected to either PCR quantification or sequencing experiments. ChIP DNA was obtained with 4 biological and technical replicates and pooled for sequencing. The quality of the ChIP DNA obtained was analyzed with a bioanalyzer. The DNA obtained from Input and ChIP were sheared by sonication using the Covaris S2 instrument (Covaris, Inc.). ChIP-seq libraries were constructed from the sheared samples using AB Library Builder System (Life Technologies), followed by amplification and ‘‘Wildfire” conversion (massive parallel monoclonal template generation, www.thermofisher.com), according to the manufacturer’s protocols. Sequencing was performed at 75 bp read length on the SOLiD 5500W system (Life Technologies). Library preparation was performed using library kit (5500 SOLiD Library Builder Fragment Core Kit + 5500W Conversion Primer Kit), after which sequencing was performed using the sequencing machine (SOLiD 5500W) at sequencing unit (SOLiD5500W FlowChip).

characteristic: description

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hs Input plus


E-MTAB-5241:Hs Z Chip minus

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5241:Hs Z Chip minus

text: ArrayExpress

text: epithelial cell

text: human

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hs Z Chip minus


E-MTAB-5241:Hs Z Chip plus

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5241:Hs Z Chip plus

text: ArrayExpress

text: epithelial cell

text: human

text: breast carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Hs Z Chip plus


text: GSC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Clostridium phytofermentans

text: Lachnoclostridium phytofermentans

text: Lachnoclostridium phytofermentans


E-MTAB-5205:Sample 1

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 1

tag: Namespace:University of Chicago

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

text: human

text: Protocols: See growth protocol Cells were grown in RPMI 1640 medium lacking L-Glutamine (Corning #15-040-CM), supplemented with 15% fetal bovine serum, 1% GlutaMAX (ThermoFisher #35050061) and 1% penicillin-streptomycin solution (ThermoFisher #10378016) at a density of 0.5x106 to 1.0x106 cells/mL. Cells were passaged every 2-3 days to maintain this density. Cells were harvested for ATAC-seq by centrifugation at 500 x g for 5 minutes at 4°C and resuspended in PBS. Cells were counted using a hemocytometer and 50,000 cells were immediately placed into a 1.5 mL Eppendorf tube for ATAC-seq. For the “no-detergent” samples, Igepal-CA630 was removed from the lysis buffer and replaced with water. For the anti-mt CRISPR treatment, we estimated that half of the DNA in each library was of mitochondrial origin, thus a 20 nM ATAC-seq library contained a mtDNA target concentration of 10 nM. Based on this value, 40, 100, 200, or 400 molar excess of Cas9 enzyme was used (NEB #M0386M) along with 100 molar excess gRNAs in a 30 μl reaction. The reaction was set up according to the protocol for Cas9 (NEB). Briefly, the appropriate amount of Cas9 enzyme and gRNAs were mixed with 3 μl of 10X Cas9 Buffer and water to a final volume of 22 μl. This was incubated at 25°C for 10 minutes and then 8 μl of the ATAC-seq library was added and the reaction was incubated at 37°C for one hour. For the two-hour treatment, the incubation was extended an additional hour; for the “Cas9 boost” treatment, the same amount of Cas9 enzyme was added after 1 hour of incubation and left for an additional hour. Reactions were subsequently treated with 1 μl of 20mg/mL Proteinase K for 15 minutes and purified using a Qiagen MinElute kit followed by elution in 10 μl nuclease-free water. Treated libraries were run on a high sensitivity Bioanalyzer chip to assess fragment size distribution and concentration. Because the multiplexing barcodes are added before treatment, for each batch of experiments, samples were sequenced on two lanes of an Illumina Hi-Seq 4000 instrument, separating anti-mt-CRISPR untreated and treated samples. ATAC-seq was performed according to Buenrostro et al. Nature Methods 10, 1213-1218 (2013). For the “no-detergent” samples, Igepal-CA630 was removed from the lysis buffer and replaced with water. NatureFor the “no-detergent” samples, Igepal-CA630 was removed from the lysis buffer and replaced with water.

unit: hour

characteristic: incubation time

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 1


E-MTAB-5205:Sample 10

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 10

text: ArrayExpress

text: lymphoblastoid cell line

characteristic: cell line

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 10


E-MTAB-5205:Sample 11

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 11

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 11


E-MTAB-5205:Sample 12

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 12

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 12

characteristic: title


E-MTAB-5205:Sample 13

characteristic: ENA-CHECKLIST

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 13

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 13


E-MTAB-5205:Sample 14

characteristic: ENA-FIRST-PUBLIC

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 14

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 14


E-MTAB-5205:Sample 15

characteristic: ENA-LAST-UPDATE

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 15

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 15


E-MTAB-5205:Sample 16

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 16

text: ArrayExpress

text: lymphoblastoid cell line

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 16


E-MTAB-5205:Sample 17

characteristic: External Id

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 17

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 17


E-MTAB-5205:Sample 18

text: University of Chicago

characteristic: INSDC center name

text: public

text: E-MTAB-5205:Sample 18

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 18


E-MTAB-5205:Sample 19

text: University of Chicago

characteristic: INSDC first public

text: public

text: E-MTAB-5205:Sample 19

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 19


E-MTAB-5205:Sample 2

text: University of Chicago

characteristic: INSDC last update

text: public

text: E-MTAB-5205:Sample 2

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-5205:Sample 20

text: University of Chicago

text: public

characteristic: INSDC status

text: E-MTAB-5205:Sample 20

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 20


E-MTAB-5205:Sample 21

text: University of Chicago

text: public

characteristic: SRA accession

text: E-MTAB-5205:Sample 21

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 21


E-MTAB-5205:Sample 22

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 22

characteristic: Submitter Id

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 22


E-MTAB-5205:Sample 23

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 23

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 23


E-MTAB-5205:Sample 24

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 24

text: ArrayExpress

text: lymphoblastoid cell line

text: human

characteristic: incubation time

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 24


E-MTAB-5205:Sample 25

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 25

text: ArrayExpress

text: lymphoblastoid cell line

characteristic: cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 25


E-MTAB-5205:Sample 26

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 26

text: ArrayExpress

text: lymphoblastoid cell line

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 26


E-MTAB-5205:Sample 27

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 27

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 27


E-MTAB-5205:Sample 28

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 28

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 28

characteristic: title


E-MTAB-5205:Sample 29

characteristic: ENA-CHECKLIST

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 29

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 29


characteristic: ENA-FIRST-PUBLIC

text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


E-MTAB-5205:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Chicago

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5205:Sample 3

text: ArrayExpress

text: lymphoblastoid cell line

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 3


E-MTAB-5205:Sample 30

text: University of Chicago

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5205:Sample 30

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

characteristic: cell line

text: human

characteristic: incubation time

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 30


E-MTAB-5205:Sample 31

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 31

text: ArrayExpress

text: lymphoblastoid cell line

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 31

characteristic: title


E-MTAB-5205:Sample 32

characteristic: ENA-LAST-UPDATE

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 32

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 32


E-MTAB-5205:Sample 33

characteristic: External Id

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 33

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 33


E-MTAB-5205:Sample 34

text: University of Chicago

characteristic: INSDC center name

text: public

text: E-MTAB-5205:Sample 34

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 34


E-MTAB-5205:Sample 35

text: University of Chicago

characteristic: INSDC first public

text: public

text: E-MTAB-5205:Sample 35

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 35


E-MTAB-5205:Sample 36

text: University of Chicago

characteristic: INSDC last update

text: public

text: E-MTAB-5205:Sample 36

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 36


E-MTAB-5205:Sample 37

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 37

text: ArrayExpress

text: lymphoblastoid cell line

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 37


E-MTAB-5205:Sample 38

text: University of Chicago

text: public

characteristic: INSDC status

text: E-MTAB-5205:Sample 38

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 38


E-MTAB-5205:Sample 39

text: University of Chicago

text: public

characteristic: SRA accession

text: E-MTAB-5205:Sample 39

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 39


E-MTAB-5205:Sample 4

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 4


E-MTAB-5205:Sample 40

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 40

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 40


E-MTAB-5205:Sample 41

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 41

text: ArrayExpress

text: lymphoblastoid cell line

characteristic: cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 41


E-MTAB-5205:Sample 42

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 42

text: ArrayExpress

text: lymphoblastoid cell line

text: human

characteristic: incubation time

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 42


E-MTAB-5205:Sample 43

characteristic: ENA-CHECKLIST

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 43

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 43


E-MTAB-5205:Sample 44

characteristic: ENA-FIRST-PUBLIC

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 44

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 44


text: SMU

text: public

characteristic: averagelengthandsd

text: feces metagenome

characteristic: common name

characteristic: connectratio(%)

characteristic: connecttagnumber

text: feces metagenome

text: feces metagenome

characteristic: tagswithoutprimer

characteristic: tagutilizationratio(%)


E-MTAB-5205:Sample 45

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Chicago

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5205:Sample 45

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 45

characteristic: title


E-MTAB-5205:Sample 46

text: University of Chicago

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5205:Sample 46

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 46


E-MTAB-5205:Sample 47

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 47

text: ArrayExpress

text: lymphoblastoid cell line

characteristic: cell line

text: human

characteristic: common name

characteristic: incubation time

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 47


E-MTAB-5205:Sample 48

characteristic: ENA-LAST-UPDATE

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 48

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 48


E-MTAB-5205:Sample 49

characteristic: External Id

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 49

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 49


E-MTAB-5205:Sample 5

text: University of Chicago

characteristic: INSDC center name

text: public

text: E-MTAB-5205:Sample 5

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 5


E-MTAB-5205:Sample 50

text: University of Chicago

characteristic: INSDC first public

text: public

text: E-MTAB-5205:Sample 50

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 50


E-MTAB-5205:Sample 51

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 51

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 51


E-MTAB-5205:Sample 52

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 52

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 52

characteristic: title


E-MTAB-5205:Sample 53

text: University of Chicago

characteristic: INSDC last update

text: public

text: E-MTAB-5205:Sample 53

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 53


E-MTAB-5205:Sample 54

text: University of Chicago

text: public

characteristic: INSDC status

text: E-MTAB-5205:Sample 54

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 54


E-MTAB-5205:Sample 6

text: University of Chicago

text: public

characteristic: SRA accession

text: E-MTAB-5205:Sample 6

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 6


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: unidentified

text: unidentified


E-MTAB-5205:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Chicago

text: public

text: E-MTAB-5205:Sample 7

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

characteristic: cell line

text: human

characteristic: common name

characteristic: description

characteristic: incubation time

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 7


E-MTAB-5205:Sample 8

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Chicago

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5205:Sample 8

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 8

characteristic: title


E-MTAB-5205:Sample 9

text: University of Chicago

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5205:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: lymphoblastoid cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 9


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

text: ArrayExpress

text: thale cress

text: Protocols: 3 hours and 24 hours after transfer, seedlings were harvested in liquid nitrogen, put in RNAlater ice solution and incubated at -20°C for at least one week, after which the third leaf was micro-dissected under a binocular light microscope. Seedlings are grown on a mesh covering MS media without carbon source, and subsequently transferred at 9 DAS to control media without sucrose or medium supplemented with 15 mM sucrose. Transfer at 9 DAS to control media without sucrose or medium supplemented with 15 mM sucrose Leaves were frozen in liquid nitrogen and RNA was extracted using Trizol (Invitrogen) and the RNeasy Plant Mini Kit (Qiagen). Library preparation was done using the TruSeq RNA Sample Preparation Kit v2 (Illumina). Briefly, polyA-containing mRNA molecules were reverse transcribed, double-stranded cDNA was generated and adapters were ligated. After quality control using 2100 Bioanalyzer (Agilent), clusters were generated through amplification using the TruSeq PE Cluster Kit v3-cBot-HS kit (Illumina).

characteristic: ecotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Leaf 3

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time


tag: attribute

characteristic: ENA-FIRST-PUBLIC

text: Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

text: public

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Leaf 3

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: Latitude End

characteristic: Longitude End

tag: Namespace:UNIVERSITY OF GOTHENBURG

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

unit: practical salinity unit

characteristic: salinity

characteristic: sampling campaign

characteristic: sampling platform

characteristic: sampling site

text: sediment metagenome

unit: ºC

characteristic: temperature

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2016


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2017

characteristic: title


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: salinity

characteristic: sampling campaign

characteristic: sampling platform

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2018


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

characteristic: sampling site

text: sediment metagenome

characteristic: temperature

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2019


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: salinity

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2020

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

characteristic: sampling campaign

characteristic: sampling platform

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2021


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: sampling site

text: sediment metagenome

characteristic: temperature

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

characteristic: salinity

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2023

characteristic: title


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: sampling campaign

characteristic: sampling platform

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2024


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GOTHENBURG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: marine

text: costal shallow water bay

text: sediment

text: water

text: North Sea

text: sediment metagenome

text: Alsterberg et al 2016

text: see methods Alsterberg et al 2016

characteristic: sampling site

text: sediment metagenome

characteristic: temperature

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2025


text: UNIVERSITY OF GOTHENBURG

text: public

characteristic: depth

text: marine

characteristic: environment (biome)

text: costal shallow water bay

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Sea

characteristic: marine region

text: sediment metagenome

characteristic: organism

text: Alsterberg et al 2016

characteristic: project name

text: see methods Alsterberg et al 2016

characteristic: protocol label

characteristic: salinity

text: sediment metagenome

text: Illumina MiSeq 16S Amplicon sequences - Alsterberg et al 2026

characteristic: title