E-MTAB-5476:Sample 530

text: PDRA

text: public

text: E-MTAB-5476:Sample 530

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 530


E-MTAB-5476:Sample 531

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5476:Sample 531

characteristic: Submitter Id

unit: week

text: ArrayExpress

text: thale cress

characteristic: common name

text: Protocols: long day conditions (16 hr light), 20 degrees Celcius Arabidopsis thaliana rosette leaves TruSeq DNA sample prep kit. Illumina sequencing

characteristic: description

text: WT Col/Ler F2

characteristic: genotype

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 531

characteristic: title

type: has member


E-MTAB-5476:Sample 532

text: PDRA

text: public

text: E-MTAB-5476:Sample 532

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 532


E-MTAB-5476:Sample 533

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: PDRA

text: public

text: E-MTAB-5476:Sample 533

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 533


E-MTAB-5476:Sample 534

characteristic: External Id

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 534

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 534


E-MTAB-5476:Sample 535

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5476:Sample 535

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 535


E-MTAB-5476:Sample 536

text: PDRA

text: public

text: E-MTAB-5476:Sample 536

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 536


E-MTAB-5476:Sample 537

text: PDRA

text: public

text: E-MTAB-5476:Sample 537

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

characteristic: genotype

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 537


E-MTAB-5476:Sample 538

text: PDRA

text: public

text: E-MTAB-5476:Sample 538

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 538

characteristic: title


E-MTAB-5476:Sample 539

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 539

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 539


E-MTAB-5476:Sample 54

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

characteristic: INSDC center name

text: public

text: E-MTAB-5476:Sample 54

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 54


E-MTAB-5476:Sample 540

text: PDRA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5476:Sample 540

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 540


E-MTAB-5476:Sample 541

text: PDRA

text: public

characteristic: SRA accession

text: E-MTAB-5476:Sample 541

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 541


E-MTAB-5476:Sample 542

text: PDRA

text: public

text: E-MTAB-5476:Sample 542

text: ArrayExpress

text: thale cress

characteristic: description

text: WT Col/Ler F2

characteristic: genotype

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 542


E-MTAB-5476:Sample 543

text: PDRA

text: public

text: E-MTAB-5476:Sample 543

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 543


E-MTAB-5476:Sample 544

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 544

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 544

characteristic: title


E-MTAB-5476:Sample 545

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 545

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 545


E-MTAB-5476:Sample 546

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5476:Sample 546

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 546


E-MTAB-5476:Sample 547

text: PDRA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5476:Sample 547

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 547


E-MTAB-5476:Sample 548

text: PDRA

text: public

text: E-MTAB-5476:Sample 548

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: WT Col/Ler F2

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 548


E-MTAB-5476:Sample 549

text: PDRA

text: public

text: E-MTAB-5476:Sample 549

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: WT Col/Ler F2

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 549


E-MTAB-5476:Sample 55

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 55

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 55


E-MTAB-5476:Sample 550

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 550

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 550

characteristic: title


E-MTAB-5476:Sample 551

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 551

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 551


E-MTAB-5476:Sample 552

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5476:Sample 552

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 552


E-MTAB-5476:Sample 553

text: PDRA

text: public

text: E-MTAB-5476:Sample 553

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: WT Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 553


E-MTAB-5476:Sample 554

text: PDRA

text: public

text: E-MTAB-5476:Sample 554

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: WT Col/Ler F2

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 554


E-MTAB-5476:Sample 555

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 555

text: ArrayExpress

text: thale cress

text: WT Col/Ler F2

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 555


E-MTAB-5476:Sample 56

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 56

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 56


E-MTAB-5476:Sample 57

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 57

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 57

characteristic: title


E-MTAB-5476:Sample 58

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5476:Sample 58

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 58


E-MTAB-5476:Sample 59

text: PDRA

text: public

characteristic: SRA accession

text: E-MTAB-5476:Sample 59

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 59


E-MTAB-5476:Sample 6

text: PDRA

text: public

text: E-MTAB-5476:Sample 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 6


E-MTAB-5476:Sample 60

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 60

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 60


E-MTAB-5476:Sample 61

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 61

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 61


E-MTAB-5476:Sample 62

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 62

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 62


E-MTAB-5476:Sample 63

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5476:Sample 63

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 63

characteristic: title


E-MTAB-5476:Sample 64

text: PDRA

text: public

characteristic: SRA accession

text: E-MTAB-5476:Sample 64

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 64


E-MTAB-5476:Sample 65

text: PDRA

text: public

text: E-MTAB-5476:Sample 65

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 65


E-MTAB-5476:Sample 66

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 66

text: ArrayExpress

text: thale cress

characteristic: description

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 66


E-MTAB-5476:Sample 67

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 67

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 67


E-MTAB-5476:Sample 68

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 68

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 68


E-MTAB-5476:Sample 69

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5476:Sample 69

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 69


E-MTAB-5476:Sample 7

text: PDRA

text: public

characteristic: SRA accession

text: E-MTAB-5476:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 7

characteristic: title


E-MTAB-5476:Sample 70

text: PDRA

text: public

text: E-MTAB-5476:Sample 70

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 70


E-MTAB-5476:Sample 71

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 71

text: ArrayExpress

text: thale cress

characteristic: common name

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 71


E-MTAB-5476:Sample 72

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 72

text: ArrayExpress

text: thale cress

characteristic: description

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 72


E-MTAB-5476:Sample 73

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 73

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 73


E-MTAB-5476:Sample 74

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5476:Sample 74

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 74


E-MTAB-5476:Sample 75

text: PDRA

text: public

characteristic: SRA accession

text: E-MTAB-5476:Sample 75

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 75


E-MTAB-5476:Sample 76

text: PDRA

text: public

text: E-MTAB-5476:Sample 76

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 76

characteristic: title


E-MTAB-5476:Sample 77

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 77

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 77


E-MTAB-5476:Sample 78

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 78

text: ArrayExpress

text: thale cress

characteristic: common name

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 78


E-MTAB-5476:Sample 79

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 79

text: ArrayExpress

text: thale cress

characteristic: description

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 79


E-MTAB-5476:Sample 8

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5476:Sample 8

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 8


E-MTAB-5476:Sample 80

text: PDRA

text: public

characteristic: SRA accession

text: E-MTAB-5476:Sample 80

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 80


E-MTAB-5476:Sample 81

text: PDRA

text: public

text: E-MTAB-5476:Sample 81

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 81


E-MTAB-5476:Sample 82

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 82

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 82

characteristic: title


E-MTAB-5476:Sample 83

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 83

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 83


E-MTAB-5476:Sample 84

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 84

text: ArrayExpress

text: thale cress

characteristic: common name

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 84


E-MTAB-5476:Sample 85

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5476:Sample 85

text: ArrayExpress

text: thale cress

characteristic: description

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 85


E-MTAB-5476:Sample 86

text: PDRA

text: public

characteristic: SRA accession

text: E-MTAB-5476:Sample 86

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 86


E-MTAB-5476:Sample 87

text: PDRA

text: public

text: E-MTAB-5476:Sample 87

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 87


E-MTAB-5476:Sample 88

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 88

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 88


E-MTAB-5476:Sample 89

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 89

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 89

characteristic: title


E-MTAB-5476:Sample 9

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 9

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 9


E-MTAB-5476:Sample 90

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5476:Sample 90

text: ArrayExpress

text: thale cress

characteristic: common name

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 90


E-MTAB-5476:Sample 91

text: PDRA

text: public

characteristic: SRA accession

text: E-MTAB-5476:Sample 91

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: description

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 91


E-MTAB-5476:Sample 92

text: PDRA

text: public

text: E-MTAB-5476:Sample 92

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: CMT3 Col/Ler F2

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 92


E-MTAB-5476:Sample 93

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 93

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 93


E-MTAB-5476:Sample 94

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA

text: public

text: E-MTAB-5476:Sample 94

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 94


E-MTAB-5476:Sample 95

text: PDRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5476:Sample 95

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 95

characteristic: title


E-MTAB-5476:Sample 96

text: PDRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5476:Sample 96

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 96


E-MTAB-5476:Sample 97

text: PDRA

text: public

characteristic: SRA accession

text: E-MTAB-5476:Sample 97

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 97


E-MTAB-5476:Sample 98

text: PDRA

text: public

text: E-MTAB-5476:Sample 98

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

text: CMT3 Col/Ler F2

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 98


E-MTAB-5476:Sample 99

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PDRA

text: public

text: E-MTAB-5476:Sample 99

text: ArrayExpress

text: thale cress

text: CMT3 Col/Ler F2

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 99


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI-TUEBINGEN

text: public

text: thale cress

text: Arabidopsis thaliana herbarium sample collected in 1967 in the Patagonia region of Argentina. DNA was not repaired before library preparation and sequencing.

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Patagonia herbarium


text: MPI-TUEBINGEN

characteristic: INSDC center name

text: public

text: thale cress

text: Arabidopsis thaliana herbarium sample collected in 1967 in the Patagonia region of Argentina. DNA was UDG-repaired before library preparation and sequencing.

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Patagonia herbarium repaired


text: UCSDMI

characteristic: INSDC first public

text: public

text: Well 3.6.13.D old plate

text: TRUE

characteristic: elevation

text: urban biome

text: research facility

text: soil

text: soil

text: USA:CO:Boulder

text: TRUE

text: Not applicable

characteristic: host scientific name

text: Not applicable

text: Not applicable

characteristic: latitude

characteristic: longitude

text: soil metagenome

text: UCSDMI

text: FALSE

characteristic: project

text: TRUE

characteristic: public

text: soil

text: soil metagenome

text: Primer test 515fBC 806r 2014


text: Salmonella enterica subsp. enterica serovar Typhi

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: common name

characteristic: organism

characteristic: strain

characteristic: title


text: Uncultured bacterium

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Uncultured bacterium

text: uncultured bacterium

text: uncultured bacterium


text: Salmonella enterica subsp. enterica serovar Choleraesuis

text: SC

characteristic: INSDC first public

text: public


text: Salmonella enterica subsp. enterica serovar Typhimurium

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Enteritidis

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Paratyphi C

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Heidelberg

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Paratyphi B

text: SC

text: public


text: UNIVERSITY OF ESSEX

text: public

tag: Namespace:UNIVERSITY OF ESSEX

characteristic: collection date

text: Ambient ring 1

characteristic: description

text: Grassland

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Mixed plant roots

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: root associated fungus metagenome

text: plant-associated

characteristic: plant-associated environmental package

text: Gi-FACE

characteristic: project name

text: root associated fungus metagenome

text: Illumina

characteristic: sequencing method

text: AMF community exposed to ambient CO2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF ESSEX

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ambient ring 2

text: Grassland

text: Grassland

text: Mixed plant roots

text: Germany

text: mimarks-survey

text: root associated fungus metagenome

characteristic: organism

text: plant-associated

text: Gi-FACE

text: root associated fungus metagenome

text: Illumina

text: AMF community exposed to ambient CO2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ESSEX

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Ambient ring 3

characteristic: description

text: Grassland

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Mixed plant roots

text: Germany

text: mimarks-survey

text: root associated fungus metagenome

text: plant-associated

text: Gi-FACE

text: root associated fungus metagenome

text: Illumina

text: AMF community exposed to ambient CO2


text: UNIVERSITY OF ESSEX

text: public

text: Elevated ring 1

text: Grassland

text: Grassland

text: Mixed plant roots

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: root associated fungus metagenome

text: plant-associated

characteristic: plant-associated environmental package

text: Gi-FACE

characteristic: project name

text: root associated fungus metagenome

text: Illumina

characteristic: sequencing method

text: AMF community exposed to elevated CO2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF ESSEX

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Elevated ring 2

text: Grassland

text: Grassland

text: Mixed plant roots

text: Germany

text: mimarks-survey

text: root associated fungus metagenome

characteristic: organism

text: plant-associated

text: Gi-FACE

text: root associated fungus metagenome

text: Illumina

text: AMF community exposed to elevated CO2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ESSEX

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Elevated ring 3

characteristic: description

text: Grassland

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Mixed plant roots

text: Germany

text: mimarks-survey

text: root associated fungus metagenome

text: plant-associated

text: Gi-FACE

text: root associated fungus metagenome

text: Illumina

text: AMF community exposed to elevated CO2


text: Technische Universitat Munchen - WZW

text: public

tag: Namespace:Technische Universitat Munchen - WZW

text: In this work a phenotypic screening over a cohort of clinical Candida glabrata isolates was undertaken leading to the identification of an isolate, named FFUL887, which was recovered from the urinary tract and that was found to be resistant to both fluconazole and voriconazole. To better understand the molecular mechanisms underlying the azole-resistance phenotype of the FFUL887 strain its genome sequence was obtained, annotated and compared with the one of the reference strain CBS138, susceptible to the two above mentioned azoles and having an intestinal origin. Besides providing clues to mechanisms underlying acquisition of azole resistance inside the host, our results also provide insights into the different responses evolved by C. glabrata in the colonization of different niches.

characteristic: isolate

text: [Candida] glabrata

text: [Candida] glabrata

text: Sequencing and comparative genomics of Candida glabrata isolate FFUL887


characteristic: ENA-CHECKLIST

text: INSERM UMR 1220 - IRSD

text: public

tag: Namespace:INSERM UMR 1220 - IRSD

text: house mouse

characteristic: common name

text: 454 raw data

text: Mus musculus

text: Mus musculus

text: metagenomic reads


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

characteristic: INSDC last update

text: public

tag: Namespace:University Hospital Galway

text: Ireland

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human

text: Salmonella enterica subsp. enterica serovar Denver

text: Denver

characteristic: serovar

text: Subsp. I


characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: not applicable

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Durham

characteristic: organism

text: Durham

text: Subsp. I

characteristic: title


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Ireland

text: not applicable

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Jerusalem

text: Jerusalem

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: Ireland

text: not applicable

text: Homo sapiens

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Kimuenza

text: Kimuenza

text: Subsp. I


characteristic: ENA-FIRST-PUBLIC

text: CNAG

characteristic: INSDC last update

text: public

text: Stephan Menne

text: woodchuck

characteristic: common name

text: Woodhuck genomic DNA extracted from blood

characteristic: description

text: Marmota monax

text: Marmota monax

text: female

characteristic: sex

text: blood

text: Woodchuck genomic DNA


characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human

text: Salmonella enterica subsp. diarizonae serovar 35:i:z35

text: IIIb 35:i:z35

characteristic: serovar

text: Subsp. IIIb


text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: not applicable

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Limete

characteristic: organism

text: Limete

text: Subsp. I

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Ireland

text: not applicable

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. diarizonae serovar 61:k:1,5,7

text: IIIb 61:k:5,7

text: Subsp. IIIb


text: Bacteria

characteristic: ArrayExpress-CellType

characteristic: ArrayExpress-DevelopmentalStage

text: RiboZero treatment

characteristic: ArrayExpress-Immunoprecipitate

text: intestinal content

characteristic: ArrayExpress-OrganismPart

characteristic: ArrayExpress-Phenotype

text: not applicable

characteristic: ArrayExpress-Sex

text: Bifidobacterium breve UCC2003

characteristic: ArrayExpress-Species

text: Bifidobacterium breve UCC2003

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: Bifidobacterium breve UCC2003

characteristic: common name

text: Bifidobacterium breve UCC2003

text: bacterial RNA extracted from faeces of germ free C57/BL6 mice monocolonised with B. breve UCC2003

text: Bifidobacterium breve UCC2003

text: Bifidobacterium breve UCC2003

characteristic: strain


text: Bacteria

text: RiboZero treatment

text: intestinal content

text: not applicable

text: Bifidobacterium breve UCC2003

text: Bifidobacterium breve UCC2003

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Bifidobacterium breve UCC2003

text: Bifidobacterium breve UCC2003

characteristic: organism

text: bacterial RNA extracted from large intestinal content of SPF C57/BL6 mice gavaged with B. breve UCC2003

text: Bifidobacterium breve UCC2003

text: Bifidobacterium breve UCC2003

characteristic: title


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Animal

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

characteristic: serovar


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

characteristic: INSDC last update

text: public

text: Ireland

text: not applicable

text: homo sapiens

text: Human

text: Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: not applicable

text: homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Bovismorbificans

text: Bovismorbificans


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: description

text: TRUE

characteristic: elevation

text: EMP

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: USA:CO:Boulder

text: Not applicable

text: Not applicable

characteristic: latitude

characteristic: longitude

text: control blank

characteristic: matrix

text: metagenome

text: Missing:Not reported

characteristic: ph

text: Missing:Not reported

text: UCSDMI

text: FALSE

characteristic: plate

text: TRUE

characteristic: public

text: Missing:Not reported

characteristic: salinity

text: Missing:Not reported

text: Juniata College

text: control blank

text: metagenome

text: Effect of fracking on freshwater biosystems

characteristic: well


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: TRUE

text: EMP

text: freshwater biome

text: stream

text: organic material

text: plant-associated

text: USA:PA

text: bryophyta

characteristic: host scientific name

text: bryophyte

text: biofilm metagenome

characteristic: organism

text: Missing:Not reported

text: Missing:Not reported

text: UCSDMI

text: FALSE

text: TRUE

text: Missing:Not reported

text: Missing:Not reported

text: Juniata College

text: biofilm

text: biofilm metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: description

text: TRUE

text: EMP

text: freshwater biome

text: stream

text: stream sediment

text: sediment

text: USA:PA

text: Not applicable

text: Not applicable

text: sediment

text: freshwater sediment metagenome

text: Missing:Not reported

text: Missing:Not reported

text: UCSDMI

text: FALSE

text: TRUE

text: Missing:Not reported

text: Missing:Not reported

text: Juniata College

text: freshwater sediment

text: freshwater sediment metagenome


text: UCSDMI

text: public

text: TRUE

characteristic: elevation

text: EMP

text: freshwater biome

text: stream

text: fresh water

text: water

text: USA:PA

text: Not applicable

text: Not applicable

characteristic: latitude

characteristic: longitude

text: water

characteristic: matrix

text: freshwater metagenome

text: Missing:Not reported

characteristic: ph

text: Missing:Not reported

text: UCSDMI

text: FALSE

characteristic: plate

text: TRUE

characteristic: public

text: Missing:Not reported

text: Missing:Not reported

text: Juniata College

text: freshwater

text: freshwater metagenome


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: TRUE

text: EMP

text: freshwater biome

text: stream

text: biofilm

text: sediment

text: USA:PA

text: Not applicable

characteristic: host scientific name

text: Not applicable

text: biofilm

text: biofilm metagenome

text: Missing:Not reported

text: Missing:Not reported

text: UCSDMI

text: FALSE

text: TRUE

text: Missing:Not reported

characteristic: salinity

text: Missing:Not reported

text: Juniata College

text: biofilm

text: biofilm metagenome

characteristic: well


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TRUE

text: EMP

text: freshwater biome

text: stream

text: stream sediment

text: sediment

text: USA:PA

text: Not applicable

text: Not applicable

text: unknown

text: freshwater sediment metagenome

characteristic: organism

text: Missing:Not reported

text: Missing:Not reported

text: UCSDMI

text: FALSE

text: TRUE

text: Missing:Not reported

text: Missing:Not reported

text: Juniata College

text: freshwater sediment

text: freshwater sediment metagenome

characteristic: title


text: WARWICK UNIVERSITY

text: public

characteristic: SRA accession

tag: Namespace:WARWICK UNIVERSITY

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: Lugo

characteristic: geographic location (region and locality)

text: not applicable

characteristic: host health state

text: not applicable

characteristic: isolate

text: Pork

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

text: Escherichi coli isolate


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Max Planck Institute for Evolutionary Anthroplogy

characteristic: Submitter Id

text: cave bear

characteristic: common name

text: Ursus spelaeus

text: Ursus spelaeus

text: Sequencing the shortest ancient DNA fragments


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Aberdeen University

text: public

tag: Namespace:Aberdeen University

text: Tetracapsuloides bryosalmonae

text: Tetracapsuloides bryosalmonae

text: Tetracapsula bryosalmonae transcriptome fish host


text: Aberdeen University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tetracapsuloides bryosalmonae

characteristic: organism

text: Tetracapsuloides bryosalmonae

text: Tetracapsula bryosalmonae transcriptome bryozoa


text: UCSDMI

text: public

characteristic: SRA accession

text: Well E3 BIOS.SW.Cont7T6

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: research facility

text: sea water

text: water

text: USA:CO:Boulder

text: TRUE

text: Not applicable

characteristic: host scientific name

text: Not applicable

text: Not applicable

characteristic: latitude

characteristic: longitude

text: seawater metagenome

text: UCSDMI

text: FALSE

text: Apprill

characteristic: project

text: TRUE

characteristic: public

text: sea water

text: seawater metagenome

text: Primer test 515fBC 806r 2014

characteristic: title


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_10218:10218.BIOS.SW.Corals4T12

characteristic: Submitter Id

text: Well C7 BIOS.SW.Corals4T12

text: TRUE

text: urban biome

text: research facility

text: sea water

text: water

text: USA:CO:Boulder

text: TRUE

text: Not applicable

text: Not applicable

text: Not applicable

text: seawater metagenome

text: UCSDMI

text: FALSE

text: Apprill

text: TRUE

text: sea water

text: seawater metagenome

text: Primer test 515fBC 806r 2014


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Well H4 BIOS.SW.Corals4T6

text: TRUE

text: urban biome

text: research facility

text: sea water

text: water

text: USA:CO:Boulder

text: TRUE

text: Not applicable

text: Not applicable

text: Not applicable

text: seawater metagenome

text: UCSDMI

text: FALSE

text: Apprill

text: TRUE

text: sea water

text: seawater metagenome

text: Primer test 515fBC 806r 2014


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Well F2 BIOS.SW.Corals5T2

text: TRUE

text: urban biome

text: research facility

text: sea water

text: water

text: USA:CO:Boulder

text: TRUE

text: Not applicable

text: Not applicable

text: Not applicable

text: seawater metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: Apprill

text: TRUE

text: sea water

text: seawater metagenome

text: Primer test 515fBC 806r 2014


text: UCSDMI

text: public

characteristic: SRA accession

text: Well B7 BIOS.SW.Csm1T8

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

text: research facility

text: sea water

text: water

text: USA:CO:Boulder

text: TRUE

text: Not applicable

text: Not applicable

text: Not applicable

text: seawater metagenome

text: UCSDMI

text: FALSE

text: Apprill

text: TRUE

text: sea water

text: seawater metagenome

text: Primer test 515fBC 806r 2014


text: UCSDMI

text: public

text: Well D7 Gulf.Oil.1.3.B

text: TRUE

text: urban biome

text: research facility

text: marine sediment

text: sediment

text: USA:CO:Boulder

text: TRUE

text: Not applicable

characteristic: host scientific name

text: Not applicable

text: Not applicable

characteristic: latitude

characteristic: longitude

text: marine sediment metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: marine sediment

text: marine sediment metagenome

text: Primer test 515fBC 806r 2014


text: UCSDMI

text: public

text: Well G7 Gulf.Oil.1.6.A

text: TRUE

text: urban biome

text: research facility

text: marine sediment

text: sediment

text: USA:CO:Boulder

text: TRUE

text: Not applicable

text: Not applicable

text: Not applicable

text: marine sediment metagenome

text: UCSDMI

text: FALSE

characteristic: project

text: TRUE

characteristic: public

text: marine sediment

text: marine sediment metagenome

text: Primer test 515fBC 806r 2014

characteristic: title


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Well F8 Gulf.Oil.1.8.H

text: TRUE

text: urban biome

text: research facility

text: marine sediment

text: sediment

text: USA:CO:Boulder

text: TRUE

text: Not applicable

text: Not applicable

text: Not applicable

text: marine sediment metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: marine sediment

text: marine sediment metagenome

text: Primer test 515fBC 806r 2014


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: Submitter Id

text: Well B9 Gulf.Oil.2.1.A

text: TRUE

text: urban biome

text: research facility

text: marine sediment

text: sediment

text: USA:CO:Boulder

text: TRUE

text: Not applicable

text: Not applicable

text: Not applicable

text: marine sediment metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: marine sediment

text: marine sediment metagenome

text: Primer test 515fBC 806r 2014


characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Well F12 Gulf.Oil.2.2.A

text: TRUE

text: urban biome

text: research facility

text: marine sediment

text: sediment

text: USA:CO:Boulder

text: TRUE

text: Not applicable

text: Not applicable

text: Not applicable

text: marine sediment metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: marine sediment

text: marine sediment metagenome

text: Primer test 515fBC 806r 2014


text: public

characteristic: SRA accession

text: Coral virome

characteristic: description

text: Porites lutea

characteristic: organism

text: Porites lutea

text: Porites lutea Virome_DNA_tech1


text: UNIVERSITY HOHENHEIM

text: public

tag: Namespace:UNIVERSITY HOHENHEIM

text: pig

characteristic: host scientific name

text: pig gut metagenome

text: pig gut metagenome

text: pig fecal sample


text: NOFIMA

text: public

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Aquaculture

characteristic: environment (biome)

text: sea water

characteristic: environment (feature)

text: intestine

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Salmo salar

text: SalmoIntest

characteristic: project name

text: Salmo salar

text: Illumina

characteristic: sequencing method

text: SalmoIntest


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: horse

text: Heterozygous Curly Horse

text: Equus caballus

text: Equus caballus

text: blood

text: BCF SPARTACULAR SPLASHES

characteristic: title


text: INRA

text: public

characteristic: SRA accession

text: horse

characteristic: common name

text: Straight Horse

characteristic: description

text: Equus caballus

characteristic: organism

text: Equus caballus

text: blood

text: ALIAS SPLASH


text: Chlamydia trachomatis

characteristic: ArrayExpress-Species

text: SC

text: public

text: Chlamydia trachomatis

text: Chlamydia trachomatis

text: Chlamydia trachomatis

characteristic: strain


text: Mycobacterium abscessus

text: SC

text: public

text: Mycobacterium abscessus

text: Mycobacterium abscessus

text: Mycobacterium abscessus


text: Mycobacterium intracellulare

text: SC

text: public

text: Mycobacterium intracellulare

text: Mycobacterium intracellulare

text: Mycobacterium intracellulare


AM out 8m 3um

text: NOFIMA

text: public

text: AM out 8m 3um

characteristic: collection date

text: Atlantic salmon

text: Acuaculture

characteristic: environment (biome)

text: sea water

characteristic: environment (feature)

text: water and skin surface

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Salmo salar

text: SalmoMicrobe

characteristic: project name

text: Salmo salar

text: Illumina

characteristic: sequencing method

text: AM SW and skin


AM SW1 skin mucus1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NOFIMA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AM SW1 skin mucus1

characteristic: Submitter Id

text: Atlantic salmon

text: Acuaculture

text: sea water

text: water and skin surface

text: Norway

text: host-associated

text: metagenome

text: Salmo salar

text: SalmoMicrobe

text: Salmo salar

text: Illumina

text: AM SW and skin

characteristic: title


AM SW2 skin mucus1

text: NOFIMA

text: public

text: AM SW2 skin mucus1

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Acuaculture

characteristic: environment (biome)

text: sea water

characteristic: environment (feature)

text: water and skin surface

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: host-associated

text: metagenome

text: Salmo salar

characteristic: organism

text: SalmoMicrobe

text: Salmo salar

text: Illumina

text: AM SW and skin


AM SW2 skin mucus2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NOFIMA

text: public

text: AM SW2 skin mucus2

text: Atlantic salmon

text: Acuaculture

text: sea water

text: water and skin surface

text: Norway

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Salmo salar

text: SalmoMicrobe

characteristic: project name

text: Salmo salar

text: Illumina

characteristic: sequencing method

text: AM SW and skin


AM out 8m 0.2um

characteristic: External Id

text: NOFIMA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AM out 8m 0.2um

characteristic: Submitter Id

text: Atlantic salmon

text: Acuaculture

text: sea water

text: water and skin surface

text: Norway

text: host-associated

text: metagenome

text: Salmo salar

text: SalmoMicrobe

text: Salmo salar

text: Illumina

text: AM SW and skin

characteristic: title


text: KOALA GENOME CONSORTIUM

text: public

tag: Namespace:KOALA GENOME CONSORTIUM

text: koala

characteristic: common name

text: Phascolarctos cinereus

characteristic: organism

text: Phascolarctos cinereus

text: Pacific Chocolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GIGA-R University of Liege

text: public

tag: Namespace:GIGA-R University of Liege

text: host

characteristic: alignmentorigin

text: T-cell

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: GIGA-R University of Liege

text: public

text: virus

text: T-cell

text: Human T-lymphotropic virus 1

text: Human T-lymphotropic virus 1


text: Saolta

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: External Id

text: Saolta

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IRL

text: Klebsiella

characteristic: genus

text: Ireland

text: Homo sapiens

characteristic: host

text: not applicable

text: Homo sapiens

text: Human

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

type: AMR curated data - CABBAGE

value: cefoxitin

value: EUCAST

value: broth dilution

value: Vitek

value: susceptible

value: Klebsiella pneumoniae

value: cefpodoxime

value: resistant

value: cefotaxime

value: cefpodoxime-clavulanic acid

value: ampicillin

value: ertapenem

value: gentamicin

value: amikacin

value: meropenem

value: intermediate

value: tobramycin

value: amoxicillin-clavulanic acid

value: piperacillin-tazobactam


text: Saolta

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IRL

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella

text: Ireland

text: Homo sapiens

text: not applicable

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title

value: EUCAST

value: broth dilution

value: tigecycline

value: cefoxitin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: not applicable

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

value: Vitek

value: susceptible

value: Klebsiella pneumoniae

value: cefpodoxime


characteristic: ENA-LAST-UPDATE

text: Saolta

text: public

text: IRL

characteristic: collection date

text: Klebsiella

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: not applicable

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: ampicillin

value: resistant

value: cefotaxime

value: cefpodoxime-clavulanic acid


text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: not applicable

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: gentamicin

value: ertapenem

value: meropenem

value: amikacin


characteristic: External Id

text: Saolta

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: not applicable

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: piperacillin-tazobactam

value: amoxicillin-clavulanic acid

value: tobramycin

value: intermediate


text: Saolta

characteristic: INSDC last update

text: public

text: IRL

text: Klebsiella

characteristic: genus

text: Ireland

text: Homo sapiens

characteristic: host

text: not applicable

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: tigecycline

value: EUCAST

value: broth dilution

value: cefoxitin


text: Saolta

text: public

characteristic: INSDC status

text: IRL

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella

text: Ireland

text: Homo sapiens

text: not applicable

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: Vitek

value: Klebsiella pneumoniae

value: susceptible

value: cefpodoxime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

text: Bacillus anthracis

text: Bacillus anthracis

characteristic: title


characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: Mycobacterium boenickei was isolated from a leg wound in USA

characteristic: description

text: Mycobacterium boenickei

characteristic: organism

text: Mycobacterium boenickei

characteristic: strain

text: Draft genome sequence of Mycobacterium boenickei


text: Target Sciences group, Glaxo Smithkline

text: public

text: E-MTAB-51911487254392:U937 BR1 CTR+LPS_RNA

tag: Namespace:Target Sciences group, Glaxo Smithkline

text: ArrayExpress

characteristic: broker name

text: monocyte

text: human

characteristic: common name

text: Protocols: No treatment, 2 nM PMA at 0 hrs, spike-in of LPS to a final concentration of 100 ng/mL at 24 hrs and harvesting of cells at 42 hrs. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: lymphoma

characteristic: disease

text: lipopolysaccharide only

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR1 CTR+LPS_RNA


E-MTAB-51911487254392:U937 BR1 CTR_RNA

characteristic: External Id

text: Target Sciences group, Glaxo Smithkline

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-51911487254392:U937 BR1 CTR_RNA

text: ArrayExpress

text: monocyte

text: human

text: Protocols: No treatment and harvesting of cells at 42 hrs. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: lymphoma

text: medium-only control

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR1 CTR_RNA


text: Target Sciences group, Glaxo Smithkline

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-51911487254392:U937 BR1 PMA+LPS_RNA

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: human

text: Protocols: 2 nM PMA at 0 hrs, spike-in of LPS to a final concentration of 100 ng/mL at 24 hrs and harvesting of cells at 42 hrs. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: lymphoma

text: phorbol myristate acetate and lipopolysaccharide

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR1 PMA+LPS_RNA


E-MTAB-51911487254392:U937 BR1 PMA_RNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Target Sciences group, Glaxo Smithkline

text: public

text: E-MTAB-51911487254392:U937 BR1 PMA_RNA

text: ArrayExpress

text: monocyte

text: human

text: Protocols: 2 nM PMA at 0 hrs, control medium at 24 hrs and harvesting of cells at 42 hrs. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: lymphoma

text: phorbol myristate acetate only

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR1 PMA_RNA

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Target Sciences group, Glaxo Smithkline

text: public

text: E-MTAB-51911487254392:U937 BR1 VD3+LPS_RNA

text: ArrayExpress

text: monocyte

text: human

text: Protocols: 66 nM Vitamin D3 at 0 hrs, spike-in of LPS to a final concentration of 100 ng/mL at 24 hrs and harvesting of cells at 42 hrs. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

characteristic: description

text: lymphoma

text: vitamin D3 and lipopolyssacharide

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: U937 BR1 VD3+LPS_RNA


E-MTAB-51911487254392:U937 BR1 VD3_RNA

text: Target Sciences group, Glaxo Smithkline

text: public

text: E-MTAB-51911487254392:U937 BR1 VD3_RNA

text: ArrayExpress

characteristic: broker name

text: monocyte

text: human

characteristic: common name

text: Protocols: 66 nM Vitamin D3 at 0 hrs, control medium at 24 hrs and harvesting of cells at 42 hrs. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: lymphoma

text: vitamin D3 only

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR1 VD3_RNA


text: Target Sciences group, Glaxo Smithkline

text: public

text: E-MTAB-51911487254392:U937 BR2 CTR+LPS_RNA

text: ArrayExpress

text: monocyte

text: human

text: lymphoma

characteristic: disease

text: lipopolysaccharide only

characteristic: growth condition

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR2 CTR+LPS_RNA


E-MTAB-51911487254392:U937 BR2 CTR_RNA

characteristic: External Id

text: Target Sciences group, Glaxo Smithkline

text: public

text: E-MTAB-51911487254392:U937 BR2 CTR_RNA

text: ArrayExpress

text: monocyte

text: human

text: lymphoma

text: medium-only control

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR2 CTR_RNA


text: Target Sciences group, Glaxo Smithkline

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-51911487254392:U937 BR2 PMA+LPS_RNA

text: ArrayExpress

text: monocyte

text: human

text: lymphoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR2 PMA+LPS_RNA


E-MTAB-51911487254392:U937 BR2 PMA_RNA

text: Target Sciences group, Glaxo Smithkline

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-51911487254392:U937 BR2 PMA_RNA

text: ArrayExpress

text: monocyte

text: human

text: lymphoma

text: phorbol myristate acetate only

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR2 PMA_RNA


text: Target Sciences group, Glaxo Smithkline

text: public

characteristic: SRA accession

text: E-MTAB-51911487254392:U937 BR2 VD3+LPS_RNA

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: human

text: lymphoma

text: vitamin D3 and lipopolyssacharide

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR2 VD3+LPS_RNA


E-MTAB-51911487254392:U937 BR2 VD3_RNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Target Sciences group, Glaxo Smithkline

text: public

text: E-MTAB-51911487254392:U937 BR2 VD3_RNA

text: ArrayExpress

text: monocyte

text: human

text: lymphoma

text: vitamin D3 only

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: U937 BR2 VD3_RNA


characteristic: ENA-LAST-UPDATE

text: SSI

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

text: ISS

characteristic: collection date

text: No

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolation source host-associated

characteristic: isolation source non-host-associated

text: Salmonella enterica

text: Salmonella enterica

text: S. Typhimurium monophasic variant S. 4,[5],12:i:-

characteristic: serovar

characteristic: strain

text: monophasic Salmonella Typhimurium from Humans

characteristic: title


characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: SRA accession

text: ISS

text: No

text: Italy

text: restricted access

text: Homo sapiens

characteristic: isolate

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: monophasic Salmonella Typhimurium from food and animals


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

text: public

text: Yes

characteristic: Is the sequenced pathogen host associated?

characteristic: Submitter Id

text: ISS

characteristic: collection date

text: No

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica


text: UFP

text: public

text: Amazon

characteristic: environment (biome)

text: Reseroir

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Brazil

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: semiconduction

characteristic: sequencing method

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: WARWICK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Spain

text: Lugo

characteristic: geographic location (region and locality)

text: not applicable

characteristic: host health state

text: not applicable

characteristic: host scientific name

characteristic: isolate

text: Human

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: serovar

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

text: WARWICK UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: Oviedo

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WARWICK UNIVERSITY

text: public

text: Spain

text: A Coruna

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: title


characteristic: External Id

text: WARWICK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Spain

text: Madrid

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Spain

text: Lugo

text: not applicable

text: not applicable

text: Pork

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

text: public

text: Spain

text: Barcelona

characteristic: geographic location (region and locality)

text: not applicable

characteristic: host health state

text: not applicable

characteristic: host scientific name

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

text: public

text: Spain

text: Lugo

text: not applicable

text: not applicable

characteristic: isolate

text: Chicken breast

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: serovar

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

text: WARWICK UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Spain

text: not applicable

text: not applicable

text: Fecal content

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WARWICK UNIVERSITY

text: public

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

text: not applicable

text: Avian pathology, internal organs

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: WARWICK UNIVERSITY

characteristic: INSDC center name

text: public

text: Spain

text: Gran Canaria

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: title


text: WARWICK UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Spain

text: not applicable

text: not applicable

text: Swine

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

text: public

characteristic: SRA accession

text: Spain

text: Pontevedra

characteristic: geographic location (region and locality)

text: not applicable

characteristic: host health state

text: not applicable

text: Fecal swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

text: public

text: Spain

text: Lugo

text: not applicable

text: not applicable

characteristic: host scientific name

characteristic: isolate

text: Fecal swab

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

text: WARWICK UNIVERSITY

text: public

characteristic: Submitter Id

text: Spain

text: A Coruna

text: not applicable

text: not applicable

text: Fecal swab

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WARWICK UNIVERSITY

text: public

characteristic: collection date

text: Spain

text: Santander

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: WARWICK UNIVERSITY

characteristic: INSDC center name

text: public

text: Spain

characteristic: geographic location (country and/or sea)

text: A Coruna

text: not applicable

text: not applicable

text: Avian feces

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Spain

text: Barcelona

text: not applicable

text: not applicable

text: Urban Sewage

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: title


text: WARWICK UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Spain

text: Lugo

characteristic: geographic location (region and locality)

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

text: public

text: Spain

text: Vigo

text: not applicable

characteristic: host health state

text: not applicable

characteristic: host scientific name

characteristic: isolate

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

text: WARWICK UNIVERSITY

text: public

characteristic: Submitter Id

text: Spain

text: Barcelona

text: not applicable

text: not applicable

text: River water

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WARWICK UNIVERSITY

text: public

text: Spain

text: Oviedo

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

text: Escherichia coli


characteristic: External Id

text: WARWICK UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: collection date

text: Spain

text: Valencia

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Spain

characteristic: geographic location (country and/or sea)

text: Lugo

text: not applicable

text: not applicable

text: Pork

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Spain

text: Santiago de Compostela

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: title


text: WARWICK UNIVERSITY

text: public

text: Spain

text: Lugo

characteristic: geographic location (region and locality)

text: not applicable

characteristic: host health state

text: not applicable

characteristic: host scientific name

text: Chicken breast

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

text: WARWICK UNIVERSITY

text: public

characteristic: Submitter Id

text: Spain

text: Lugo

text: not applicable

text: not applicable

characteristic: isolate

text: Coprocultive

text: Escherichia coli

text: Escherichia coli

text: ONT

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WARWICK UNIVERSITY

text: public

text: Spain

text: Barcelona

text: not applicable

text: not applicable

text: Human

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: WARWICK UNIVERSITY

characteristic: INSDC center name

text: public

text: Spain

text: Lugo

text: not applicable

text: not applicable

text: Coprocultive

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

text: Escherichia coli


text: WARWICK UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Spain

text: Lugo

text: not applicable

text: not applicable

text: fecal swab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Spain

characteristic: geographic location (country and/or sea)

text: Pontevedra

text: not applicable

text: not applicable

text: Enviromental avian faeces in farm

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

text: public

text: Spain

text: Santiago de Compostela

characteristic: geographic location (region and locality)

text: not applicable

characteristic: host health state

text: not applicable

text: Human clinical faeces

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: title


characteristic: ENA-LAST-UPDATE

text: WARWICK UNIVERSITY

text: public

characteristic: Submitter Id

text: Spain

text: Lugo

text: not applicable

text: not applicable

characteristic: host scientific name

text: Human clinical faeces

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WARWICK UNIVERSITY

text: public

text: Spain

text: A Coruna

text: not applicable

text: not applicable

characteristic: isolate

text: Coprocultive

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: WARWICK UNIVERSITY

characteristic: INSDC center name

text: public

text: Spain

text: Lugo

text: not applicable

text: not applicable

text: Beef

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


text: WARWICK UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Spain

text: Lugo

text: not applicable

text: not applicable

text: Fox Fecal swab

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

text: Escherichia coli


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Missing: Not provided

characteristic: bactoscan

text: Missing: Not provided

text: Missing: Not provided

text: 10/7/13 0:00

text: Missing: Not provided

text: Missing: Not provided

characteristic: dateprocessed

text: tanker milk fall

characteristic: description

text: true

text: Missing: Not provided

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

characteristic: latitude

characteristic: longitude

text: Not applicable

characteristic: notes

text: milk metagenome

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: fall

characteristic: season

text: not applicable

text: not applicable

text: not applicable

text: Raw and Partially Proccesed California Bovine Milk


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: Submitter Id

text: Missing: Not provided

text: 8/25/14 0:00

text: Missing: Not provided

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable

characteristic: title


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Missing: Not provided

text: 8/25/14 0:00

text: Missing: Not provided

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

characteristic: organism

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Missing: Not provided

characteristic: bactoscan

text: 8/26/14 0:00

text: Missing: Not provided

characteristic: dateprocessed

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable


text: UCSDMI

text: public

text: Missing: Not provided

text: Missing: Not provided

text: 8/26/14 0:00

text: Missing: Not provided

text: raw milk silo milk summer

characteristic: description

text: true

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

characteristic: latitude

characteristic: longitude

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: raw milk silo milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable

text: not applicable


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: Missing: Not provided

text: 8/26/14 0:00

text: Missing: Not provided

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

characteristic: notes

text: milk metagenome

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

characteristic: season

text: not applicable

text: not applicable


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: 8/25/14 0:00

text: Missing: Not provided

text: raw milk silo milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: raw milk silo milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable

text: not applicable

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Missing: Not provided

text: 8/25/14 0:00

text: Missing: Not provided

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: black spot in pellet

text: milk metagenome

characteristic: organism

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Missing: Not provided

characteristic: bactoscan

text: 9/1/14 0:00

text: Missing: Not provided

characteristic: dateprocessed

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable


text: UCSDMI

text: public

text: Missing: Not provided

text: 9/1/14 0:00

text: Missing: Not provided

text: tanker milk summer

characteristic: description

text: true

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

characteristic: latitude

characteristic: longitude

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: Missing: Not provided

text: 9/2/14 0:00

text: Missing: Not provided

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

characteristic: notes

text: milk metagenome

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

characteristic: season

text: not applicable

text: not applicable


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: Submitter Id

text: Missing: Not provided

text: 9/2/14 0:00

text: Missing: Not provided

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Missing: Not provided

text: Missing: Not provided

text: 9/1/14 0:00

text: Missing: Not provided

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

characteristic: organism

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Missing: Not provided

characteristic: bactoscan

text: Missing: Not provided

text: Missing: Not provided

text: 9/1/14 0:00

text: Missing: Not provided

characteristic: dateprocessed

text: raw milk silo milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: raw milk silo milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable

text: not applicable


text: UCSDMI

text: public

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: 9/1/14 0:00

text: Missing: Not provided

text: raw milk silo milk summer

characteristic: description

text: true

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

characteristic: latitude

characteristic: longitude

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: PMA

text: raw milk silo milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable

text: not applicable


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: 9/2/14 0:00

text: Missing: Not provided

text: raw milk silo milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

characteristic: notes

text: milk metagenome

text: UCDavis

text: false

text: raw milk silo milk

text: milk metagenome

text: summer

characteristic: season

text: not applicable

text: not applicable

text: not applicable


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: Submitter Id

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: 9/2/14 0:00

text: Missing: Not provided

text: raw milk silo milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: PMA

text: raw milk silo milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable

text: not applicable

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Missing: Not provided

text: 9/1/14 0:00

text: Missing: Not provided

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

characteristic: organism

text: UCDavis

text: false

text: PMA

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Missing: Not provided

characteristic: bactoscan

text: Missing: Not provided

text: 9/1/14 0:00

text: Missing: Not provided

characteristic: dateprocessed

text: tanker milk summer

text: true

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

text: Not applicable

text: milk metagenome

text: UCDavis

text: false

text: PMA

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable


text: UCSDMI

text: public

text: Missing: Not provided

text: 9/1/14 0:00

text: Missing: Not provided

text: tanker milk summer

characteristic: description

text: true

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: bovine milk

text: host-associated

text: USA: California

text: mimarks-survey

characteristic: latitude

characteristic: longitude

text: milk metagenome

text: UCDavis

text: false

text: tanker milk

text: milk metagenome

text: summer

text: not applicable

text: not applicable