characteristic: ENA-CHECKLIST

text: CEBITEC

text: public

text: Draft genome sequence of Rhizoctonia solani AG3

text: soil

text: potato

text: potato

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: isolate

text: Rhizoctonia solani AG-3

characteristic: project name

text: Rhizoctonia solani AG-3

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Sample 15

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

text: 44°26'4272 N

unit: DD

text: 11°28'3540 E

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LSA-DISTAL-UNIBO

text: public

text: Sample 16

text: chicken

text: feces

text: feces

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Sample 18

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun


text: LSA-DISTAL-UNIBO

text: public

characteristic: collection date

text: Sample 19

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LSA-DISTAL-UNIBO

text: public

text: Sample 20

text: chicken

text: feces

text: feces

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Sample 21

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun


text: LSA-DISTAL-UNIBO

text: public

characteristic: collection date

text: Sample 22

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LSA-DISTAL-UNIBO

text: public

text: Sample 23

text: chicken

text: feces

text: feces

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LSA-DISTAL-UNIBO

text: public

characteristic: collection date

text: Sample 24

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sample 25

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LSA-DISTAL-UNIBO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Sample 26

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSA-DISTAL-UNIBO

text: public

text: Sample 28

text: chicken

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sample 30

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LSA-DISTAL-UNIBO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Sample 31

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSA-DISTAL-UNIBO

text: public

text: Sample 32

text: chicken

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: metagenome

characteristic: organism

text: LSA-challenge poultry feces

text: metagenome

text: shot gun

characteristic: title


text: LSA-DISTAL-UNIBO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sample 33

text: chicken

text: feces

text: feces

text: Italy

text: 44°26'4272 N

characteristic: geographic location (latitude)

text: 11°28'3540 E

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: metagenome

text: LSA-challenge poultry feces

characteristic: project name

text: metagenome

text: shot gun

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LSA-DISTAL-UNIBO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Sample 34

characteristic: description

text: chicken

characteristic: environment (biome)

text: feces

text: feces

text: Italy

text: 44°26'4272 N

text: 11°28'3540 E

text: host-associated

text: metagenome

text: metagenome

text: LSA-challenge poultry feces

text: metagenome

text: shot gun


text: TIL cell

text: mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: subject id

text: mus musculus

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:CENTER FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF

text: 1925 AD

text: gray wolf

text: Rosenvinge Bugt, Greenland

characteristic: geographic location (region and locality)

text: Canis lupus

text: Canis lupus

text: CN 1921

characteristic: specimen voucher

text: 1921: Greenland wolf from 1925

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CENTER FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Before 1869 AD

text: gray wolf

text: Uummannaq, Greenland

text: Canis lupus

text: Canis lupus

text: CN 214

text: 214: Greenland wolf from 1869


text: public

characteristic: Submitter Id

text: ca. 3,600-2,700 YBP

characteristic: collection date

text: dog

text: Qaja, Greenland

text: Canis lupus familiaris

text: Canis lupus familiaris

text: ZMK 350/1982

text: P79: Ancient dog from greenland


characteristic: ENA-LAST-UPDATE

text: public

text: ca. 600-1,000 YBP

text: dog

text: GUS, Greenland

text: Canis lupus familiaris

text: Canis lupus familiaris

text: NKA 1950x2906

text: P83: Ancient dog from greenland


characteristic: External Id

text: public

text: ca. 7,620 YBP

text: gray wolf

text: Voelvedal, Greenland

text: Canis lupus

text: Canis lupus

text: MGUH VP 3332

text: P84: Ancient wolf from greenland


TumatWolf

text: public

text: TumatWolf

text: ca. 14,164 YBP

text: gray wolf

characteristic: common name

text: Tumat, Siberia

text: Canis lupus

text: Canis lupus

text: TumatWolf: Wolf from Tumat Siberia


text: Universidad del Rosario

text: public

tag: Namespace:Universidad del Rosario

text: Heliconius cydno weymeri

characteristic: organism

text: Heliconius cydno weymeri

text: Salazar CS6


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar M3635


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar M3638


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar M3640


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar STRI0061


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar STRI0063


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar CS7


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar CS8


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar 2529


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar M3637


text: Universidad del Rosario

text: public

text: Heliconius cydno weymeri

text: Heliconius cydno weymeri

text: Salazar M3639


text: Universidad del Rosario

text: public

text: Heliconius cydno cydnides

text: Heliconius cydno cydnides

text: Salazar CS9


text: Universidad del Rosario

text: public

text: Heliconius cydno cydnides

text: Heliconius cydno cydnides

text: Salazar 2017


text: Universidad del Rosario

text: public

text: Heliconius cydno cordula

text: Heliconius cydno cordula

text: Salazar C1-3


text: Universidad del Rosario

text: public

text: Heliconius cydno cordula

text: Heliconius cydno cordula

text: Salazar C1-4


text: Universidad del Rosario

text: public

text: Heliconius cydno cydno

text: Heliconius cydno cydno

text: Salazar C2-2


text: Universidad del Rosario

text: public

text: Heliconius cydno cydno

text: Heliconius cydno cydno

text: Salazar C2-3


text: Universidad del Rosario

text: public

text: Heliconius cydno zelinde

text: Heliconius cydno zelinde

text: Salazar CS1


text: Universidad del Rosario

text: public

text: Heliconius cydno zelinde

text: Heliconius cydno zelinde

text: Salazar CS2


text: Universidad del Rosario

text: public

text: Heliconius cydno zelinde

text: Heliconius cydno zelinde

text: Salazar CS30


text: Universidad del Rosario

text: public

text: Heliconius cydno zelinde

text: Heliconius cydno zelinde

text: Salazar 2262


text: BGI

text: public

text: Human-associated

characteristic: environment (biome)

text: Female reproductive tract

characteristic: environment (feature)

text: Cervical os

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: human vaginal metagenome

text: The microbiota at the female reproductive tract in successful IVF-ET and RIF

characteristic: project name

text: human vaginal metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: Samples from the female reproductive tract


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Human-associated

text: Female reproductive tract

text: Cervical mucus

text: China

text: human-associated

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

text: public

characteristic: Submitter Id

characteristic: collection date

text: Human-associated

characteristic: environment (biome)

text: Female reproductive tract

characteristic: environment (feature)

text: Endometrium

text: China

text: human-associated

text: metagenome

text: human vaginal metagenome

characteristic: organism

text: human vaginal metagenome

text: Ion Torrent PGM


text: public

tag: Namespace:State Key Laboratory of Lake Science and Environment

text: large lake biome

text: lake

text: aquatic macrophyte leave

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: 31.20827 ºN

characteristic: geographic location (latitude)

text: 120.42601 ºE

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: unidentified bacterium

text: plant-associated

characteristic: plant-associated environmental package

text: Macropyte biodegradation by bacteria

characteristic: project name

text: unidentified bacterium

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: State Key Laboratory of Lake Science and Environment

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: large lake biome

text: lake

text: aquatic macrophyte leave

text: China

text: 31.20827 ºN

text: 120.42601 ºE

text: metagenome

text: unidentified bacterium

text: plant-associated

text: Macropyte biodegradation by bacteria

text: unidentified bacterium

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OREGON STATE UNIVERS

text: public

characteristic: SRA accession

text: E-MTAB-5721:Seedling-shoot-2 days-light-treated-replicate-1

tag: Namespace:OREGON STATE UNIVERS

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: The growth chamber was set to cycle between 20C for 12 hours and 18C for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Continuous light: Samples harvested after growing them firt in continuous dark for 8 days after germination followed by 48hrs (48LL) of continuous exposure to light (120µmol/m2/sec at soil surface). Therefore the samples were harvested after 12 days after germination (12DAG) with last two days with continuous light exposure. Total RNA from frozen seedling shoot sample was extracted as per manufacturer's protocol using RNA Plant reagent (Invitrogen Inc., USA), RNeasy kits (Qiagen Inc., USA), and treated with RNase-free DNase (Life Technologies Inc., USA) True-Seq kit (Illumina Inc.) was used to prepare RNA-seq libraries, according to the manufacture’s protocol.

characteristic: description

text: LP.02 two leaves visible stage

characteristic: developmental stage

text: The chamber was set to cycle between 20oC for 12 hours and 18oC for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Sampling was done at 10 am under light.

characteristic: growth condition

text: germination

characteristic: initial time point

text: Hordeum vulgare

text: Hordeum vulgare

text: shoot

characteristic: organism part

unit: day

characteristic: sampling time point

text: Hordeum vulgare

text: Morex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: OREGON STATE UNIVERS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5721:Seedling-shoot-2 days-light-treated-replicate-2

text: ArrayExpress

text: LP.02 two leaves visible stage

text: germination

text: Hordeum vulgare

characteristic: organism

text: Hordeum vulgare

text: shoot

text: Hordeum vulgare

text: Morex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OREGON STATE UNIVERS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5721:Seedling-shoot-2 days-light-treated-replicate-3

text: ArrayExpress

text: LP.02 two leaves visible stage

text: germination

text: Hordeum vulgare

text: Hordeum vulgare

text: shoot

text: Hordeum vulgare

text: Morex


text: OREGON STATE UNIVERS

text: public

characteristic: SRA accession

text: E-MTAB-5721:Seedling-shoot-8 days-dark-treated-replicate-1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: The growth chamber was set to cycle between 20C for 12 hours and 18C for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Continuous dark: Samples harvested after growing them in continuous dark for 8 days (8DD) after germination. All plants germinated in 2 days. Therefore, dark samples were harvested 10 days after germination (10DAG). Total RNA from frozen seedling shoot sample was extracted as per manufacturer's protocol using RNA Plant reagent (Invitrogen Inc., USA), RNeasy kits (Qiagen Inc., USA), and treated with RNase-free DNase (Life Technologies Inc., USA) True-Seq kit (Illumina Inc.) was used to prepare RNA-seq libraries, according to the manufacture’s protocol.

characteristic: description

text: LP.02 two leaves visible stage

text: The chamber was set to cycle between 20oC for 12 hours and 18oC for the next 12 hours, and the soil was kept moist by gently spraying with water every 72 hours. Sampling was done at about 7.30 pm under green lights.

text: germination

text: Hordeum vulgare

text: Hordeum vulgare

text: shoot

text: Hordeum vulgare

text: Morex


text: OREGON STATE UNIVERS

text: public

text: E-MTAB-5721:Seedling-shoot-8 days-dark-treated-replicate-2

text: ArrayExpress

text: LP.02 two leaves visible stage

characteristic: developmental stage

characteristic: growth condition

text: germination

characteristic: initial time point

text: Hordeum vulgare

text: Hordeum vulgare

text: shoot

characteristic: organism part

text: Hordeum vulgare

text: Morex


characteristic: ENA-CHECKLIST

text: OREGON STATE UNIVERS

text: public

text: E-MTAB-5721:Seedling-shoot-8 days-dark-treated-replicate-3

text: ArrayExpress

text: LP.02 two leaves visible stage

text: germination

text: Hordeum vulgare

text: Hordeum vulgare

text: shoot

characteristic: sampling time point

text: Hordeum vulgare

text: Morex

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: large lake biome

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: aquatic macrophyte

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: 31.20827 ºN

characteristic: geographic location (latitude)

text: 120.42601 ºE

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: unidentified bacterium

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

text: Biying_Zhao 18S

characteristic: project name

text: unidentified bacterium

text: Illumina Miseq

characteristic: sequencing method

text: Biying_Zhao 18S


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: female-fallopian tubes

text: human-associated habitat

text: mucus

text: host-associated

characteristic: environmental package

text: China

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: human vaginal metagenome

text: A Continuum of Microbiota in the Female Reproductive Tract

text: human vaginal metagenome

text: Ion Torrent PGM

text: Samples from left fallopian tubes


characteristic: ENA-FIRST-PUBLIC

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: female-fallopian tubes

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: mucus

characteristic: environment (material)

text: host-associated

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

text: Samples from right fallopian tubes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: BGI

text: public

text: female-peritoneal fluid

text: human-associated habitat

text: peritoneal fluid

text: host-associated

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: human vaginal metagenome

characteristic: organism

characteristic: project name

text: human vaginal metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: Samples from peritoneal fluid


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: enviromental control

text: human-associated habitat

text: control

text: host-associated

characteristic: environmental package

text: China

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

text: Samples from surgeon's gloved fingers


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: enviromental control

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: control

characteristic: environment (material)

text: host-associated

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

text: Samples from patient's preoperative skin area

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: BGI

text: public

text: enviromental control

text: human-associated habitat

text: control

text: host-associated

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: human vaginal metagenome

characteristic: organism

characteristic: project name

text: human vaginal metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: Samples from dry sterile swabs material


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: enviromental control

text: human-associated habitat

text: control

text: host-associated

characteristic: environmental package

text: China

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

text: ultrapure water


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: enviromental control

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: control

characteristic: environment (material)

text: host-associated

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

text: sterile PBS

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: BGI

text: public

text: enviromental control

text: human-associated habitat

text: control

text: host-associated

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: human vaginal metagenome

characteristic: organism

characteristic: project name

text: human vaginal metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: sterile physiological saline


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: enviromental control

text: human-associated habitat

text: control

text: host-associated

characteristic: environmental package

text: China

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

text: Samples from patient's skin wound edges


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: female-endometrium

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: mucus

characteristic: environment (material)

text: host-associated

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

text: Samples from centre of endometrium

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: BGI

text: public

text: female-endometrium

text: human-associated habitat

text: mucus

text: host-associated

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: human vaginal metagenome

characteristic: organism

characteristic: project name

text: human vaginal metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: Samples from fundus side endometrium


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: female-endometrium

text: human-associated habitat

text: mucus

text: host-associated

characteristic: environmental package

text: China

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

text: Samples from left of endometrium


text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: female-endometrium

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: mucus

characteristic: environment (material)

text: host-associated

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: human vaginal metagenome

text: human vaginal metagenome

text: Ion Torrent PGM

text: Samples from right of endometrium

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: BGI

text: public

text: female-endometrium

text: human-associated habitat

text: mucus

text: host-associated

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: human vaginal metagenome

characteristic: organism

characteristic: project name

text: human vaginal metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: Samples from fundus of endometrium


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Biochemistry University of Cambridge UK

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fission yeast

characteristic: common name

text: Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions. Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input. 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).

characteristic: description

text: Nitrogen source

characteristic: growth condition

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: replicate

text: Ribosome-depleted RNA

characteristic: rna source

text: Schizosaccharomyces pombe


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Department of Biochemistry University of Cambridge UK

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: fission yeast

text: Nitrogen source

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Ribosome-depleted RNA

text: Schizosaccharomyces pombe

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: fission yeast

text: Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C. ATP and buffer A (Thermo Fisher) were then added for an additional 30 min incubation. RNA fragments were column-purified (PureLink RNA micro-columns, Life Technologies). 100 ng were used as input for the NEXTflex Small RNA Sequencing Kit v2 (Bioo Scientific), following manufacturer’s protocol.

text: Nitrogen source

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: Ribosome protected fragments (RPF)

text: Schizosaccharomyces pombe


characteristic: External Id

characteristic: INSDC last update

text: public

text: ArrayExpress

text: fission yeast

text: Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions. Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input. 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).

text: Nitrogen source

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Ribosome-depleted RNA

text: Schizosaccharomyces pombe


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: fission yeast

text: Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C. ATP and buffer A (Thermo Fisher) were then added for an additional 30 min incubation. RNA fragments were column-purified (PureLink RNA micro-columns, Life Technologies). 100 ng were used as input for the NEXTflex Small RNA Sequencing Kit v2 (Bioo Scientific), following manufacturer’s protocol.

text: Nitrogen source

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Ribosome protected fragments (RPF)

text: Schizosaccharomyces pombe


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fission yeast

text: Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source. Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions. Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input. 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).

text: No nitrogen source

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Ribosome-depleted RNA

text: Schizosaccharomyces pombe


text: public

text: ArrayExpress

text: fission yeast

characteristic: common name

text: Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source. Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C. ATP and buffer A (Thermo Fisher) were then added for an additional 30 min incubation. RNA fragments were column-purified (PureLink RNA micro-columns, Life Technologies). 100 ng were used as input for the NEXTflex Small RNA Sequencing Kit v2 (Bioo Scientific), following manufacturer’s protocol.

characteristic: description

text: No nitrogen source

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Ribosome protected fragments (RPF)

text: Schizosaccharomyces pombe


text: public

text: ArrayExpress

text: fission yeast

text: Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source. Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions. Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input. 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).

text: No nitrogen source

characteristic: growth condition

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: replicate

text: Ribosome-depleted RNA

text: Schizosaccharomyces pombe


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: fission yeast

text: Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source. Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C. ATP and buffer A (Thermo Fisher) were then added for an additional 30 min incubation. RNA fragments were column-purified (PureLink RNA micro-columns, Life Technologies). 100 ng were used as input for the NEXTflex Small RNA Sequencing Kit v2 (Bioo Scientific), following manufacturer’s protocol.

text: No nitrogen source

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Ribosome protected fragments (RPF)

characteristic: rna source

text: Schizosaccharomyces pombe


text: Teladorsagia circumcincta

characteristic: ArrayExpress-SPECIES

text: mixed field samples

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: Teladorsagia circumcincta

text: Teladorsagia circumcincta

text: Teladorsagia circumcincta

characteristic: subject id

text: Teladorsagia circumcincta


text: Lungs

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


Sample 15

characteristic: External Id

text: MICALIS

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sample 15

text: Metagenomic analysis of ivorian sweet wort (tchapalo processing)

text: Cote d'Ivoire

characteristic: geographic location (country and/or sea)

text: Sweet wort (tchapalo processing)

characteristic: isolation source

text: food fermentation metagenome

text: food fermentation metagenome


text: UNIVERSITY OF CAMBRIDGE

text: public

tag: Namespace:UNIVERSITY OF CAMBRIDGE

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Group 2 innate lymphoid cells prevent endotoxin-induced fetal demise


characteristic: ENA-CHECKLIST

text: CGR

text: public

text: metagenome

characteristic: description

text: HPGast

text: HPGast

characteristic: detail

characteristic: gastrin

text: Pos

characteristic: hp

text: metagenome

characteristic: origin

characteristic: pgipgii

characteristic: run

text: metagenome

characteristic: stats

text: HPGast

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: metagenome

text: HPGast

text: HPGast

text: Pos

text: metagenome

characteristic: organism

text: unk

text: metagenome

characteristic: title

text: HPGast


characteristic: ENA-CHECKLIST

text: CGR

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

characteristic: common name

text: HPGast

characteristic: description

text: HPGast

text: Pos

text: metagenome

text: unk

text: metagenome

text: HPGast


text: CGR

text: public

text: metagenome

text: HPGast

text: HPGast

characteristic: detail

characteristic: gastrin

text: Pos

characteristic: hp

text: metagenome

characteristic: origin

characteristic: pgipgii

characteristic: run

text: metagenome

text: MALT


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGR

characteristic: INSDC center name

text: public

text: metagenome

text: HPGast

text: HPGast

text: Pos

text: metagenome

text: metagenome

characteristic: stats

text: HPGast

characteristic: treatment


characteristic: ENA-CHECKLIST

text: CGR

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: HPGast

text: HPGast

text: Pos

text: metagenome

characteristic: organism

text: metagenome

characteristic: title

text: MALT


text: CGR

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

characteristic: common name

text: Atrophy

characteristic: description

text: Atrophy

characteristic: detail

characteristic: gastrin

text: PosSero

text: metagenome

text: metagenome

text: Atrophy


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

text: public

text: metagenome

text: Atrophy

text: PosSero

characteristic: hp

text: metagenome

characteristic: origin

characteristic: pgipgii

characteristic: run

text: metagenome

text: IMAtro


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: metagenome

text: Atrophy

text: Atrophy

text: Pos

text: metagenome

text: metagenome

characteristic: stats

text: Atrophy

characteristic: treatment


text: CGR

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

text: Atrophy

text: Atrophy

text: PosSero

text: metagenome

characteristic: organism

text: metagenome

characteristic: title

text: Atrophy


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

text: public

text: metagenome

characteristic: common name

text: Atrophy

characteristic: description

text: Atrophy

characteristic: detail

characteristic: gastrin

text: PosSero

text: metagenome

text: unk

text: metagenome

text: Atrophy


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

text: public

text: metagenome

text: Atrophy

text: IM

text: PosSero

characteristic: hp

text: metagenome

characteristic: origin

characteristic: pgipgii

characteristic: run

text: metagenome

text: IM


text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: Atrophy

text: IM

text: Pos

text: metagenome

text: metagenome

characteristic: stats

text: IM

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

text: Atrophy

text: Pos

text: metagenome

characteristic: organism

text: metagenome

characteristic: title

text: IMAtro


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

text: public

text: metagenome

characteristic: common name

characteristic: description

text: Atrophy

text: Atrophy

characteristic: detail

characteristic: gastrin

text: Pos

text: metagenome

text: metagenome

text: Atrophy


text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: metagenome

text: Cancer

text: HGD

text: PosSero

characteristic: hp

text: metagenome

characteristic: origin

characteristic: pgipgii

characteristic: run

text: metagenome

text: HGD


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: Cancer

text: LGD

text: PosSero

text: metagenome

text: metagenome

characteristic: stats

text: LGD

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

text: Cancer

text: HGD

text: Neg

text: metagenome

characteristic: organism

text: metagenome

characteristic: title

text: HGD


text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: metagenome

characteristic: common name

characteristic: description

text: Cancer

text: LGD

characteristic: detail

characteristic: gastrin

text: Neg

text: metagenome

text: unk

text: metagenome

text: LGD


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

text: public

text: metagenome

text: Cancer

text: LGD

text: Neg

characteristic: hp

text: metagenome

characteristic: origin

characteristic: pgipgii

characteristic: run

text: metagenome

text: LGD


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: Cancer

text: Cancer

text: Neg

text: metagenome

text: metagenome

characteristic: stats

text: Cancer

characteristic: treatment


text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

text: Cancer

text: LGD

text: PosSero

text: metagenome

characteristic: organism

text: unk

text: metagenome

characteristic: title

text: LGD


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

text: public

text: metagenome

characteristic: common name

characteristic: description

text: Cancer

text: Cancer

characteristic: detail

characteristic: gastrin

text: Pos

text: metagenome

text: metagenome

text: Cancer


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

text: public

text: metagenome

text: Cancer

text: Cancer

text: PosSero

characteristic: hp

text: metagenome

characteristic: origin

characteristic: pgipgii

characteristic: run

text: metagenome

text: Cancer


text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: Mock

text: Mock

text: Mock

text: Mock

text: metagenome

text: Mock

text: Mock

text: metagenome

characteristic: stats

text: Mock

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

text: Neg

text: Neg

text: Neg

text: Neg

text: metagenome

characteristic: organism

text: Neg

text: Neg

text: metagenome

characteristic: title

text: Neg


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

text: public

text: metagenome

characteristic: common name

characteristic: description

characteristic: detail

characteristic: gastrin

text: metagenome

text: metagenome


text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: metagenome

text: PPI

text: PPI

text: Neg

characteristic: hp

text: metagenome

characteristic: origin

text: unk

characteristic: pgipgii

characteristic: run

text: metagenome

text: PPI


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: PPI

text: PPI

text: Neg

text: metagenome

text: unk

text: metagenome

characteristic: stats

text: PPI

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

text: Control

text: Control

text: Neg

text: metagenome

characteristic: organism

text: unk

text: metagenome

characteristic: title

text: Control


text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: metagenome

characteristic: common name

characteristic: description

text: Control

text: Control

characteristic: detail

characteristic: gastrin

text: Neg

text: metagenome

text: unk

text: metagenome

text: Control


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

text: public

text: metagenome

text: Atrophy

text: IMAt

text: PosSero

characteristic: hp

text: metagenome

characteristic: origin

characteristic: pgipgii

characteristic: run

text: metagenome

text: IMAtro


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: Auto

text: Auto

text: Neg

text: metagenome

text: metagenome

characteristic: stats

text: Auto

characteristic: treatment


text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

text: Auto

text: Auto

text: Neg

text: metagenome

characteristic: organism

text: unk

text: metagenome

characteristic: title

text: Auto


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CGR

text: public

text: metagenome

characteristic: common name

text: Auto

characteristic: description

text: Auto

characteristic: detail

characteristic: gastrin

text: PosSero

text: metagenome

text: unk

text: metagenome

text: Auto


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CGR

text: public

text: metagenome

text: Control

text: Control

text: Neg

characteristic: hp

text: metagenome

characteristic: origin

characteristic: pgipgii

characteristic: run

text: metagenome

text: Control


text: CGR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: Neg

text: Neg

text: Neg

text: Neg

text: metagenome

text: Neg

text: Neg

text: metagenome

characteristic: stats

text: Neg

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ED

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Pax6 + Gsh2 deletion. Pool of embryos 345-2, 345-5, 345-7

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ED

text: public

text: house mouse

characteristic: common name

text: Pax6 + Gsh2 deletion. Pool of embryos 344-2, 344-3, 236-1

characteristic: description

text: Mus musculus

text: Mus musculus


text: ED

text: public

text: house mouse

text: Pax6 + Gsh2 deletion. Pool of embryos 451-1, 451-6, 451-7

text: Mus musculus

text: Mus musculus


text: ED

text: public

text: house mouse

text: Pax6 + Gsh2 deletion. Pool of embryos 332-2, 332-4, 332-6

text: Mus musculus

text: Mus musculus


text: ED

text: public

text: house mouse

text: Pax6 + Gsh2 deletion. Pool of embryos 277-1, 277-2, 277-3

text: Mus musculus

text: Mus musculus


text: ED

text: public

text: house mouse

text: Pax6 deletion. Pool of embryos 344-1, 344-5, 236-2

text: Mus musculus

text: Mus musculus


text: ED

text: public

text: house mouse

text: Pax6 deletion. Pool of embryos 345-1, 345-3, 345-4

text: Mus musculus

text: Mus musculus


text: ED

text: public

text: house mouse

text: Pax6 deletion. Pool of embryos 332-1, 332-3, 332-5

text: Mus musculus

text: Mus musculus


text: ED

text: public

text: house mouse

text: Pax6 deletion. Pool of embryos 451-2, 451-3, 451-4

text: Mus musculus

text: Mus musculus


text: ED

text: public

text: house mouse

text: Pax6 deletion. Pool of embryos 277-4, 277-5, 277-6

text: Mus musculus

text: Mus musculus


name: Cleavage products of Dcl2 with oligo mix

text: Institute of Cell Biology

text: public

tag: Namespace:Institute of Cell Biology

text: Dicer-like enzymes were incubated with RNA templates and the products were sequenced

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Sequencing data of in vitro cleavage assay by Dicer-like enzymes


name: Cleavage products of Dcl3 with oligo mix

text: Institute of Cell Biology

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia


name: Cleavage products of Dcl5 with oligo mix

text: Institute of Cell Biology

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: UNIVERSIDAD DE CONCEPCION

text: public

tag: Namespace:UNIVERSIDAD DE CONCEPCION

text: DNA in-situ

text: Yes

characteristic: environmental sample

text: seawater

characteristic: isolation source

characteristic: lat lon

text: marine metagenome

text: marine metagenome

text: PROMO


text: Reich Lab

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Reich Lab

text: human

text: Homo sapiens

text: Homo sapiens

text: Diros, Alepotrypa Cave


text: Reich Lab

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

text: Homo sapiens

text: Hagios Charalambos Cave, Lasithi, Crete


characteristic: ENA-FIRST-PUBLIC

text: Reich Lab

text: public

text: human

text: Mycenaean

text: Homo sapiens

text: Homo sapiens

text: Agia Kyriaki, Salamis


characteristic: ENA-LAST-UPDATE

text: Reich Lab

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Armenoi, Crete


text: Reich Lab

text: public

characteristic: SRA accession

text: human

text: Homo sapiens

text: Homo sapiens

text: Moni Odigitria, Heraklion, Crete


text: Reich Lab

text: public

characteristic: Submitter Id

text: human

text: Mycenaean

text: Homo sapiens

text: Homo sapiens

text: Galatas Apatheia, Peloponnese


text: Reich Lab

text: public

text: human

text: Mycenaean

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Peristeria Tryfilia, Peloponnese


text: Reich Lab

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Harmanören-Göndürle Höyük, Isparta Province

characteristic: title


characteristic: ENA-CHECKLIST

text: IPK-Gatersleben

text: public

text: wild emmer wheat

text: Genomic DNA isolated from fresh leaf tissue

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Triticum dicoccoides accession 'Zavitan'


characteristic: External Id

text: NTNU Museum

text: public

tag: Namespace:NTNU Museum

text: Sphagnum magellanicum

text: Sphagnum magellanicum

text: The two morphs of Sphagnum magellanicum in the global data set.


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: ANIMAL AND PLANT HEALTH AGENCY

text: public

text: GBR

tag: Namespace:ANIMAL AND PLANT HEALTH AGENCY

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

type: AMR curated data - CABBAGE

value: ampicillin

value: agar dilution

value: mg/L

value: Escherichia coli

value: ceftazidime

value: nalidixic acid

value: azithromycin

value: ciprofloxacin

value: cefotaxime

value: trimethoprim

value: chloramphenicol

value: tigecycline

value: meropenem

value: gentamicin

value: tetracycline

value: sulfamethoxazole

value: colistin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: ampicillin


text: ANIMAL AND PLANT HEALTH AGENCY

text: public

text: GBR

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: agar dilution


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: mg/L


text: ANIMAL AND PLANT HEALTH AGENCY

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: ceftazidime


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: nalidixic acid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: azithromycin


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: ciprofloxacin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: cefotaxime


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: trimethoprim


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: chloramphenicol


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: tigecycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: meropenem


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: gentamicin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: tetracycline


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: sulfamethoxazole


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: colistin


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: ampicillin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: agar dilution


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: mg/L


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: Escherichia coli


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: ceftazidime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: nalidixic acid


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: azithromycin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: ciprofloxacin


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: cefotaxime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: trimethoprim


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: chloramphenicol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: tigecycline


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: gentamicin


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: tetracycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: sulfamethoxazole


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: colistin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: ampicillin


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: agar dilution


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: mg/L


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: ceftazidime


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: nalidixic acid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: azithromycin


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: ciprofloxacin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: cefotaxime


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: trimethoprim


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: chloramphenicol


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: tigecycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: meropenem


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: gentamicin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: tetracycline


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: sulfamethoxazole


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

characteristic: description

text: No

text: Escherichia

text: United Kingdom

text: not provided

text: No

characteristic: isolation source host associated

characteristic: isolation source non-host-associated

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

value: colistin


text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: E.coli

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: No

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title

value: ampicillin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANIMAL AND PLANT HEALTH AGENCY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: APHA

text: E.coli

text: No

text: Escherichia

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

value: agar dilution