text: UNIVERSITY OF HELSINKI

text: public

tag: Namespace:UNIVERSITY OF HELSINKI

text: The skin microbiota and allergic diseases in children in relation to nature connection of Finnish daycares

characteristic: description

text: volar forearm

characteristic: environment (biome)

text: host-associated

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-skin

characteristic: human skin environmental package

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

text: ASLA-B

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method

text: Skin microbiota in daycare shildren

characteristic: title


status: PUBLIC

text: Homo sapiens

tag: attribute

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

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characteristic: External Id

text: SC

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text: public

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characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: subject id


text: ALBERT-LUDWIGS-UNIVERSITY, FREIBURG

text: public

text: Sterolibacterium denitrificans Chol

characteristic: description

text: Sterolibacterium denitrificans

text: Sterolibacterium denitrificans

text: Chol

characteristic: strain

text: Prokaryotic genome sequencing


text: UNIMIB

text: public

text: bioanode metagenome

text: bioanode metagenome

text: phenol-reactor

characteristic: title


text: URMITE

text: public

text: Pygmee Stools

text: Bacteria ambigua

text: Bacteria ambigua

text: Treponema Pygmee


text: URMITE

text: public

text: Healthy Niger Stool samples

text: Bacteria aetolus

text: Bacteria aetolus

text: Healthy Niger samples


text: URMITE

text: public

text: Stool samples from Taureg

text: Bacteria bahiensis

text: Bacteria bahiensis

text: Taureg Stool Samples


text: UNIMI

text: public

text: Meyerozyma guilliermondii

text: Meyerozyma guilliermondii

text: Meyerozyma guilliermondii isolated from Phlebotomus perniciosus


text: public

tag: Namespace:Centrum Medyczne Ksztalcenia Podyplomowego

text: 3T3-L1 adipocytes

characteristic: cell type

text: house mouse

text: control sample

text: Mus musculus

text: Mus musculus

text: MCPIP


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text: Centrum Medyczne Ksztalcenia Podyplomowego

text: public

text: 3T3-L1 adipocytes

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text: control sample

text: Mus musculus

text: Mus musculus

text: MCPIP


characteristic: ENA-FIRST-PUBLIC

text: public

text: 3T3-L1 adipocytes

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text: MCPIP overexpression

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text: public

tag: Namespace:AG Clayton Zentrum fur Molekulare Biologie der Universitat Heidelberg

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: Protocols: Procyclic cells (EATRO 1125 strain) with a Tet-repressor construct (pHD1313) and an inducible RBP10-myc construct (pHD2098) was used. The cells were grown at 27oC in MEM-Pros medium supplemented with 10% heat inactivated fetal bovine serum. To convert procyclic (PC) to bloodstream (BS) forms, RBP10-myc was induced for 48 hours using tetracycline (200ng/ml), the cells were pelleted, resuspended (2x105 cells/ml) in HMI-9 medium and then incubated at 37oC with 5% CO2. For RNA-seq, RNA was isolated from two biological replicates after RBP10 expression for 24h and 48h; uninduced procyclic cells served as control. Two additional RNA samples from re-differentiated bloodstream forms (newly converted BS) and starting EATRO 1125 bloodstream (BS AnTat1.1_2098) cells were included. Trifast reagent (Peqlab, GMBH) was used for total RNA isolation. 5µg of total RNA was depleted of ribosomal RNA (rRNAs) using RNAse H (5U) in presence of 50-base DNA oligos complementary to trypanosome rRNAs. After DNAse I treatment, RNA was purifed using RNA Clean & Concentrator kit (Zymo Reseach, USA). RNA-seq was done at the CellNetworks Deep Sequencing Core Facility at the University of Heidelberg. For library preparation, NEBNext Ultra RNA Library Prep Kit for Illumina (New England BioLabs Inc.) was used according to the manufacturer’s instructions.

text: bloodstream

characteristic: developmental stage

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text: Trypanosoma brucei


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text: Not inoculated tomato roots after 24 hours

characteristic: description

text: Corbarino

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text: Solanum lycopersicum

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text: Solanum lycopersicum

text: Root

characteristic: tissue type

text: Control 24 hpi

type: has member


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characteristic: title


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text: Corbarino

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text: Control 72 hpi


text: CREA-ORT

text: public

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text: Tomato roots inoculated with Pseudomonas fluorescens strain CREA-C16, after 24 hours post-inoculum

text: Corbarino

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text: Pseudomonas 24 hpi


text: CREA-ORT

text: public

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text: Tomato roots inoculated with Pseudomonas fluorescens strain CREA-C16, after 48 hours post-inoculum

text: Corbarino

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text: Pseudomonas 48 hpi


text: CREA-ORT

text: public

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text: Tomato roots inoculated with Pseudomonas fluorescens strain CREA-C16, after 72 hours post-inoculum

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text: Pseudomonas 72 hpi


text: UNIVERSITY OF HELSINKI

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characteristic: collection date

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unit: DD

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text: male

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text: Illumina

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text: Healthy human faecal samples

text: Sequences are from both fresh and frozen samples (T in the name denotes samples were frozen)

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text: Ireland

text: 52.1373° N

text: 8.2812° W

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characteristic: human gut environmental package

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text: human gut metagenome

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text: 52.1373° N

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Dcl2 processing ND7

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characteristic: ENA-LAST-UPDATE

text: Institute of Cell Biology

text: public

text: Dcl2 processing ND7

tag: Namespace:Institute of Cell Biology

text: Paramecium tetraurelia

characteristic: organism

text: Paramecium tetraurelia

text: small RNAseq of in vitro Dicer cleavage


Dcl2 processing IES concatemer

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text: Paramecium tetraurelia

text: small RNAseq of in vitro Dicer cleavage


Dcl3 processing ND7

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text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: small RNAseq of in vitro Dicer cleavage


Dcl5 processing IES concatemer

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text: Dcl5 processing IES concatemer

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text: Paramecium tetraurelia

text: small RNAseq of in vitro Dicer cleavage

characteristic: title


Dcl5 processing IES concatemer longer

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text: Institute of Cell Biology

text: public

text: Dcl5 processing IES concatemer longer

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: small RNAseq of in vitro Dicer cleavage


Dcl5 processing MAC.IES 1

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text: public

characteristic: SRA accession

text: Dcl5 processing MAC.IES 1

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: small RNAseq of in vitro Dicer cleavage


Dcl5 processing MAC.IES 2

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text: public

text: Dcl5 processing MAC.IES 2

characteristic: Submitter Id

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: small RNAseq of in vitro Dicer cleavage


Dcl5 processing MAC.IES 3

text: Institute of Cell Biology

text: public

text: Dcl5 processing MAC.IES 3

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: small RNAseq of in vitro Dicer cleavage


Dcl5 processing MAC.IES 3 mutated

text: Institute of Cell Biology

text: public

text: Dcl5 processing MAC.IES 3 mutated

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: small RNAseq of in vitro Dicer cleavage


text: UNIVERSITY OF HELSINKI

text: public

characteristic: collection date

text: nasal

characteristic: environment (biome)

text: host-associated

characteristic: environment (feature)

text: nasal

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

text: uncultured eukaryote

text: KARA

text: uncultured eukaryote

text: Illumina


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Environmental Microbiology and Biotechnology, Aarhus University

text: The early life of eel in the Sargasso Sea - influence of oceanography and climate (SARGASSO-EEL)

characteristic: collected by

text: April 1, 2014

characteristic: description

text: larvae

characteristic: dev stage

text: Anguilla anguilla

characteristic: host scientific name

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

characteristic: identified by

characteristic: lat lon

text: gut metagenome

characteristic: organism

text: gut metagenome

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characteristic: tissue type

text: European eel larvae gut content


characteristic: ENA-CHECKLIST

text: Environmental Microbiology and Biotechnology, Aarhus University

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: April 1, 2014

characteristic: collection date

text: larvae

text: Anguilla anguilla

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: gut metagenome

text: gut metagenome

text: whole gut

text: European eel larvae gut content

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collected by

text: March 31, 2014

text: larvae

text: Anguilla anguilla

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: gut metagenome

text: gut metagenome

text: whole gut

text: European eel larvae gut content


text: public

text: April 3, 2014

characteristic: description

text: larvae

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text: Anguilla anguilla

characteristic: host scientific name

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

characteristic: identified by

text: gut metagenome

text: gut metagenome

text: whole gut

text: European eel larvae gut content


characteristic: ENA-CHECKLIST

text: public

text: April 12, 2014

text: larvae

text: Anguilla anguilla

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

characteristic: lat lon

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text: gut metagenome

text: whole gut

characteristic: tissue type

text: European eel larvae gut content


characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: April 14, 2014

text: larvae

text: Anguilla anguilla

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: gut metagenome

text: gut metagenome

text: whole gut

text: European eel larvae gut content


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: March 21, 2014

characteristic: collection date

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: marine metagenome

text: marine metagenome

text: Marine snow single particle

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collected by

text: March 23, 2014

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: marine metagenome

text: marine metagenome

text: Marine snow single particle


text: public

text: March 24, 2014

characteristic: description

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

characteristic: identified by

text: marine metagenome

text: marine metagenome

text: Marine snow single particle


characteristic: ENA-CHECKLIST

text: public

text: March 22, 2014

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: 24.99903, -65.4984

characteristic: lat lon

text: marine metagenome

text: marine metagenome

text: Marine snow single particle


text: public

text: March 29, 2014

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Marine snow single particle


characteristic: INSDC center name

text: public

text: April 3, 2014

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: 27.50062, -62.688

text: marine metagenome

text: marine metagenome

text: Marine snow single particle


characteristic: INSDC first public

text: public

text: March 31, 2014

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: marine metagenome

text: marine metagenome

text: Marine snow single particle


characteristic: INSDC last update

text: public

text: April 1, 2014

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: marine metagenome

text: marine metagenome

text: Marine snow single particle


text: public

characteristic: INSDC status

text: April 2, 2014

text: Daniel Jiro Ayala, djay@aqua.dtu.dk

text: 26.66663, -62.7495

text: marine metagenome

text: marine metagenome

text: Marine snow single particle


text: CENTRE FOR GEOGENETICS

text: public

characteristic: SRA accession

tag: Namespace:CENTRE FOR GEOGENETICS

text: Extraction Blank Control

text: Ruditapes philippinarum

text: Ruditapes philippinarum


text: CENTRE FOR GEOGENETICS

text: public

characteristic: Submitter Id

text: green ormer

characteristic: common name

text: modern abalone shell

text: Haliotis tuberculata

text: Haliotis tuberculata


text: CENTRE FOR GEOGENETICS

text: public

text: green ormer

text: modern abalone shell

text: Haliotis tuberculata

text: Haliotis tuberculata

text: modern abalone shell

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: CENTRE FOR GEOGENETICS

text: public

text: green ormer

text: ancient abalone shell

text: Haliotis tuberculata

text: Haliotis tuberculata


characteristic: ENA-LAST-UPDATE

text: CENTRE FOR GEOGENETICS

text: public

text: modern clam shell

text: Ruditapes philippinarum

text: Ruditapes philippinarum


characteristic: External Id

text: CENTRE FOR GEOGENETICS

text: public

text: ancient clam shell

text: Ruditapes decussatus

text: Ruditapes decussatus


text: CENTRE FOR GEOGENETICS

text: public

text: ancient clam shell

text: Venerupis corrugata

text: Venerupis corrugata


text: CENTRE FOR GEOGENETICS

text: public

text: ancient mussel shell

text: Mytilus edulis

text: Mytilus edulis


text: CENTRE FOR GEOGENETICS

text: public

text: ancient ocean quahog shell

text: Arctica islandica

text: Arctica islandica


text: CENTRE FOR GEOGENETICS

text: public

text: Pacific oyster

text: modern oyster shell

text: Crassostrea gigas

text: Crassostrea gigas


text: CENTRE FOR GEOGENETICS

text: public

text: modern scallop shell

text: Pecten maximus

text: Pecten maximus


text: CENTRE FOR GEOGENETICS

text: public

text: modern Scallop shell

text: Pecten maximus

text: Pecten maximus


text: KYUNG HEE UNIVERSITY

text: public

tag: Namespace:KYUNG HEE UNIVERSITY

characteristic: collection date

text: Bacterial communities on the leaf surfaces of field-grown broccoli

text: broccoli leaf surfaces

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: bacteria

characteristic: environment (material)

text: South Korea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Brassica oleracea var. italica

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: Brassica oleracea var. italica

text: 454 pyrosequencing Titanium

characteristic: sequencing method

text: broccoli-associated microbiota


Brucella neotomae 5K33

characteristic: ENA-CHECKLIST

text: Universidad Nacional de Costa Rica

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Brucella neotomae 5K33

tag: Namespace:Universidad Nacional de Costa Rica

characteristic: Submitter Id

text: Reference strain

characteristic: description

text: USA

text: not provided

characteristic: host health state

text: Neotoma lepida

characteristic: host scientific name

text: Reference strain

characteristic: isolate

text: Pooled tissue, reference strains

characteristic: isolation source

text: Brucella neotomae 5K33

characteristic: organism

text: Brucella neotomae 5K33

text: Brucella neotomae 5K33


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR  EVOLUTIONARY BIOLOGY

text: Rheingroppe

characteristic: common name

text: Illumina GAIIx 150bp forward genomic reads

text: Cottus rhenanus

text: Cottus rhenanus

characteristic: title


characteristic: ENA-CHECKLIST

text: MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

characteristic: INSDC center name

text: public

text: Rheingroppe

text: Cottus rhenanus

text: Cottus rhenanus


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Scheldegroppe

text: Cottus perifretum

text: Cottus perifretum


text: public

characteristic: INSDC status

characteristic: SRA accession

text: teleost fish

text: teleost fish


text: UNIBE-IG

text: public

characteristic: Submitter Id

text: dog

text: Leonberger - female

characteristic: description

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Leonberger


Bacteroides uniformis CECT 77711

text: Nutrition & Health

text: public

text: Bacteroides uniformis CECT 77711

tag: Namespace:Nutrition & Health

text: Genome sequencing of the Bacteroides uniformis CECT 7771 by nanopore technology. Transcriptomic analysis under anaerobic culture using different carbon sources.

text: Bacteroides uniformis

text: Bacteroides uniformis

text: Genome and transcriptome of the Bacteroides uniformis CECT 7771


text: UNIBE-IG

text: public

text: dog

text: Leonberger

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Leonberger


text: THE ROSLIN INSTITUTE

text: public

tag: Namespace:THE ROSLIN INSTITUTE

text: Wild-type

text: Staphylococcus aureus subsp. aureus USA300_FPR3757

text: USA300 LAC

characteristic: strain

text: wild type

characteristic: sub strain

text: Staphylococcus aureus USA300 LAC SElX mutants


text: THE ROSLIN INSTITUTE

text: public

text: Deletion of selx

text: USA300 LAC

text: USA300 LACΔselx


text: THE ROSLIN INSTITUTE

text: public

text: Reintroduction of selx

text: USA300 LAC

text: USA300 LAC Δselx rep


text: THE ROSLIN INSTITUTE

text: public

text: Re-introduced selx, with site-directed mutations of the sialic acid-binding motif

text: USA300 LAC

text: USA300 LAC selx EKQD-A


text: WDRC KAUST

text: public

tag: Namespace:WDRC KAUST

characteristic: collection date

text: Biofilm

characteristic: environment (biome)

text: Seawater

characteristic: environment (feature)

text: Titanium

characteristic: environment (material)

text: built environment

characteristic: environmental package

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: metagenome

text: Seawater biofilm

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Biofilm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Biofilm

text: Seawater

text: Stainless steel

text: built environment

text: Saudi Arabia

text: metagenome

text: metagenome

characteristic: organism

text: Seawater biofilm

text: metagenome

text: Illumina MiSeq

text: Biofilm

characteristic: title


text: WDRC KAUST

text: public

characteristic: Submitter Id

characteristic: collection date

text: Biofilm

characteristic: environment (biome)

text: Seawater

characteristic: environment (feature)

text: Polycarbonate

characteristic: environment (material)

text: built environment

characteristic: environmental package

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: Seawater biofilm

text: metagenome

text: Illumina MiSeq

text: Biofilm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WDRC KAUST

text: public

text: Biofilm

text: Seawater

text: HDPE

text: built environment

text: Saudi Arabia

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: metagenome

text: Seawater biofilm

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Biofilm


characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Water

text: Seawater

text: Seawater

text: built environment

text: Saudi Arabia

text: metagenome

text: metagenome

characteristic: organism

text: Seawater biofilm

text: metagenome

text: Illumina MiSeq

text: Biofilm

characteristic: title


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: Submitter Id

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ASCL1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ASCL1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample BBX_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample BBX_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample BHLHE40_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample BHLHE40_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample CDX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample CDX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample CEBPB_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample CEBPB_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample CEBPE_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample CEBPE_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample DLX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample DLX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample DLX4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample DLX4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample DLX5_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample DLX5_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample DMBX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample DMBX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample E2F8_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample E2F8_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample EGR1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample EGR1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ELF2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ELF2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ELF4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ELF4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ELF5_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ELF5_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ELK1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ELK1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ELK3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ELK3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample EN2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample EN2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ERG_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ERG_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ESX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ESX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ETV1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ETV1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ETV4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ETV4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample FLI1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample FLI1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample FOXJ2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample FOXJ2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample GRHL1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample GRHL1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample GSC_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample GSC_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample HEY2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample HEY2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample HMBOX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample HMBOX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample HOXA10_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample HOXA10_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample HOXC11_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample HOXC11_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample HSF2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample HSF2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample IRX5_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample IRX5_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample LHX9_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample LHX9_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample MAX_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample MAX_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample MLX_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample MLX_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample MYBL2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample MYBL2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample MYF6_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample MYF6_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample MYOG_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample MYOG_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample NFATC1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample NFATC1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample NFATC2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample NFATC2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample NFATC4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample NFATC4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample NKX2-3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample NKX2-3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample NPAS2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample NPAS2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample NR2F6_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample NR2F6_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample OLIG2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample OLIG2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample OLIG3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample OLIG3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ONECUT1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ONECUT1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ONECUT2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ONECUT2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample OTX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample OTX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample PITX2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample PITX2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample PITX3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample PITX3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample PKNOX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample PKNOX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample PKNOX2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample PKNOX2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample POU2F2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample POU2F2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample PROP1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample PROP1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample RFX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample RFX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample RFX3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample RFX3_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample RFX4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample RFX4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample SIX4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample SIX4_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample SOX10_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample SOX10_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample SOX30_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample SOX30_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample SPIB_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample SPIB_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample T_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample T_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample TBX2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample TBX2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample TCF12_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample TCF12_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample TCF21_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample TCF21_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample TFCP2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample TFCP2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample TFCP2L1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample TFCP2L1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample TFEB_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample TFEB_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample TFEC_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample TFEC_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample UBP1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample UBP1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample USF2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample USF2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample VAX2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample VAX2_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample XBP1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample XBP1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample YBX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample YBX1_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration mHT-SELEX sample ZBTB7B_eDBD


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: High salt concentration HT-SELEX sample ZBTB7B_eDBD


E-MTAB-5618:Sample 4

text: BRISTOL

text: public

text: E-MTAB-5618:Sample 4

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: RNA from cultured cells Nucleospin RNA kit from Machery-Nagel The libraries were constructed by The Earlham Institute on a PerkinElmer Sciclone using the TruSeq RNA protocol v2 (Illumina 15026495 Rev.F). The library preparation involved the initial QC of the RNA using a Tecan plate reader with the Quant-iT™ RNA Assay Kit (Life technologies/Invitrogen Q-33140) and the Quant-iT™ DNA Assay Kit, high sensitivity (Life technologies/Invitrogen Q-33120). Finally, the quality of the RNA was established using the PerkinElmer GX with a high sensitivity chip and High Sensitivity DNA reagents (PerkinElmer 5067-4626). RNA quality scores were 8.7 and 9.8 for two of the samples and 10.0 (for the remaining 4 samples). 1 ug of RNA was purified to extract mRNA with a poly- A pull down using biotin beads, fragmented and first strand cDNA was synthesised. This process reverse transcribes the cleaved RNA fragments primed with random hexamers into first strand cDNA using reverse transcriptase and random primers. The ends of the samples were repaired using the 3' to 5' exonuclease activity to remove the 3' overhangs and the polymerase activity to fill in the 5' overhangs creating blunt ends. A single ‘A’ nucleotide was added to the 3’ ends of the blunt fragments to prevent them from ligating to one another during the adapter ligation reaction. A corresponding single ‘T’ nucleotide on the 3’ end of the adapter provided a complementary overhang for ligating the adapter to the fragment. This strategy ensured a low rate of chimera formation. The ligation of a number indexing adapters to the ends of the DNA fragments prepared them for hybridisation onto a flow cell. The ligated products were subjected to a bead based size selection using Beckman Coulter XP beads (Beckman Coulter A63880) to remove un-ligated adapters, as well as any adapters that may have ligated to one another. Prior to hybridisation to the flow cell the samples were amplified by PCR to selectively enrich those DNA fragments that have adapter molecules on both ends and to amplify the amount of DNA in the library. The PCR was performed with a PCR primer cocktail that annealed to the ends of the adapter. The insert size of the libraries was verified by running an aliquot of the DNA library on a PerkinElmer GX using the High Sensitivity DNA chip and reagents (PerkinElmer CLS760672) and the concentration was determined by using the Tecan plate reader. The resulting libraries were then equimolar pooled and Q-PCR was performed on the pool prior to clustering.

characteristic: description

text: pSpCas9n(BB)-2A-GFP; gRNAs HSL0001186601 and HSR0001186603 targeting the GOLGB1 gene

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: retina

characteristic: organism part

text: giantin knockout

characteristic: phenotype

text: Homo sapiens

text: Sample 4


E-MTAB-5618:Sample 5

characteristic: External Id

text: BRISTOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5618:Sample 5

text: ArrayExpress

text: epithelial cell

text: human

text: Homo sapiens

text: Homo sapiens

text: retina

text: giantin knockout

text: Homo sapiens

text: Sample 5


E-MTAB-5618:Sample 6

text: BRISTOL

text: public

text: E-MTAB-5618:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: retina

text: giantin knockout

text: Homo sapiens

text: Sample 6

characteristic: title


E-MTAB-5618:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: BRISTOL

text: public

text: E-MTAB-5618:Sample 1

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: retina

text: wild type

text: Homo sapiens

text: Sample 1


E-MTAB-5618:Sample 2

text: BRISTOL

text: public

text: E-MTAB-5618:Sample 2

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: description

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: retina

text: wild type

text: Homo sapiens

text: Sample 2


E-MTAB-5618:Sample 3

characteristic: External Id

text: BRISTOL

characteristic: INSDC center name

text: public

text: E-MTAB-5618:Sample 3

text: ArrayExpress

text: epithelial cell

text: human

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: retina

characteristic: organism part

text: wild type

characteristic: phenotype

text: Homo sapiens

text: Sample 3


text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MEDICAL UNIVERSITY GRAZ

characteristic: collection date

text: human

text: Faecal samples from healthy donors and recipients with ulcerative colitis pre- and post-FMT

text: human

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: UC-FMT-study

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method

text: UC-FMT-study


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CENTRE FOR GEOGENETICS

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Vibrio tapetis RP2-3 strain

characteristic: description

text: Vibrio tapetis subsp. tapetis

characteristic: organism

text: Vibrio tapetis subsp. tapetis

characteristic: title


text: CENTRE FOR GEOGENETICS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vibrio tapetis HH6087 strain

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis


Cc4 LOS/CPS locus

text: Universite de Namur

text: public

text: Cc4 LOS/CPS locus

tag: Namespace:Universite de Namur

characteristic: collection date

text: Here we present the LOS/CPS biosynthesis locus sequence of Cc4, a strain of Capnocytophaga canimorsus isolated from a human infection.

text: Switzerland

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human

characteristic: isolate

text: Human infection

characteristic: isolation source

text: Capnocytophaga canimorsus

text: Capnocytophaga canimorsus

text: E

characteristic: serovar

characteristic: strain

text: Cc4 LOS/CPS locus


Cc6 LOS/CPS locus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universite de Namur

characteristic: INSDC center name

text: public

text: Cc6 LOS/CPS locus

text: Here we present the LOS/CPS biosynthesis locus sequence of Cc6, a strain of Capnocytophaga canimorsus isolated from a human infection.

text: Belgium

text: diseased

text: Homo sapiens

text: Human infection

text: Human infection

text: Capnocytophaga canimorsus

text: Capnocytophaga canimorsus

text: B

text: Cc6 LOS/CPS locus


Cc9 LOS/CPS locus

text: Universite de Namur

characteristic: INSDC first public

text: public

text: Cc9 LOS/CPS locus

characteristic: Submitter Id

characteristic: culture collection

text: Here we present the LOS/CPS biosynthesis locus sequence of Cc9, a strain of Capnocytophaga canimorsus isolated from a human infection.

characteristic: description

text: USA

text: diseased

text: Homo sapiens

text: Human infection

text: Human infection

text: Capnocytophaga canimorsus

characteristic: organism

text: Capnocytophaga canimorsus

text: C

text: Cc9 LOS/CPS locus

characteristic: title


text: INRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: stephane Chaillou

characteristic: collected by

characteristic: collection date

text: Slice of organic beef carpaccio stored under modified atmosphere 14 days at 8 degrees

text: organic beef carpaccio

text: Serratia proteamaculans

text: Serratia proteamaculans

text: food sample


text: KI-BN

text: public

text: synthetic construct

text: synthetic construct

text: SELEX background file


text: UCSDMI

text: public

text: qiita_sid_945:945.P1.A10.lane2.NoIndex.L002

characteristic: anonymized name

text: deepest point

characteristic: basin

characteristic: conductivity

characteristic: depth

text: freshwater metagenome, Lake Stechlin

text: TRUE

characteristic: elevation

text: large lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: water

characteristic: env package

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: Germany:Stechlin Lake

characteristic: geo loc name

characteristic: host subject id

text: Stechlin

characteristic: lake

characteristic: latitude

characteristic: longitude

text: freshwater metagenome

characteristic: oxygen

characteristic: ph

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: Missing: Not provided

text: fresh water

characteristic: sample type

text: freshwater metagenome

characteristic: secchi depth

characteristic: temp

text: Routine samples of German Lakes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_945:945.P1.A11.lane2.NoIndex.L002

characteristic: Submitter Id

characteristic: anonymized name

text: deepest point

characteristic: basin

characteristic: conductivity

characteristic: depth

text: freshwater metagenome, Lake Stechlin

characteristic: description

text: TRUE

text: large lake biome

text: freshwater lake

text: water

text: fresh water

text: TRUE

text: Germany:Stechlin Lake

text: Stechlin

text: freshwater metagenome

characteristic: organism

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

text: Missing: Not provided

text: fresh water

text: freshwater metagenome

characteristic: title

text: Routine samples of German Lakes


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_945:945.P1.A12.lane2.NoIndex.L002

text: deepest point

text: freshwater metagenome, Lake Stechlin

text: TRUE

characteristic: elevation

text: large lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: water

characteristic: env package

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: Germany:Stechlin Lake

characteristic: geo loc name

characteristic: host subject id

text: Stechlin

characteristic: lake

characteristic: latitude

characteristic: longitude

text: freshwater metagenome

characteristic: oxygen

characteristic: ph

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: Missing: Not provided

text: fresh water

characteristic: sample type

text: freshwater metagenome

characteristic: secchi depth

characteristic: temp

text: Routine samples of German Lakes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_945:945.P1.A2.lane2.NoIndex.L002

characteristic: Submitter Id

characteristic: anonymized name

text: deepest point

characteristic: basin

characteristic: conductivity

characteristic: depth

text: freshwater metagenome, Lake Stechlin

characteristic: description

text: TRUE

text: large lake biome

text: freshwater lake

text: water

text: fresh water

text: TRUE

text: Germany:Stechlin Lake

text: Stechlin

text: freshwater metagenome

characteristic: organism

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

text: Missing: Not provided

text: fresh water

text: freshwater metagenome

text: Routine samples of German Lakes

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_945:945.P1.A3.lane2.NoIndex.L002

text: deepest point

text: freshwater metagenome, Lake Stechlin

text: TRUE

characteristic: elevation

text: large lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: water

characteristic: env package

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: Germany:Stechlin Lake

characteristic: geo loc name

characteristic: host subject id

text: Stechlin

characteristic: lake

characteristic: latitude

characteristic: longitude

text: freshwater metagenome

characteristic: oxygen

characteristic: ph

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: Missing: Not provided

text: fresh water

characteristic: sample type

text: freshwater metagenome

characteristic: secchi depth

characteristic: temp

text: Routine samples of German Lakes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_945:945.P1.A4.lane2.NoIndex.L002

characteristic: Submitter Id

characteristic: anonymized name

text: deepest point

characteristic: basin

characteristic: conductivity

characteristic: depth

text: freshwater metagenome, Lake Stechlin

characteristic: description

text: TRUE

text: large lake biome

text: freshwater lake

text: water

text: fresh water

text: TRUE

text: Germany:Stechlin Lake

text: Stechlin

text: freshwater metagenome

characteristic: organism

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

text: Missing: Not provided

text: fresh water

text: freshwater metagenome

text: Routine samples of German Lakes

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_945:945.P1.A5.lane2.NoIndex.L002

text: deepest point

text: freshwater metagenome, Lake Stechlin

text: TRUE

characteristic: elevation

text: large lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: water

characteristic: env package

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: Germany:Stechlin Lake

characteristic: geo loc name

characteristic: host subject id

text: Stechlin

characteristic: lake

characteristic: latitude

characteristic: longitude

text: freshwater metagenome

characteristic: oxygen

characteristic: ph

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: Missing: Not provided

text: fresh water

characteristic: sample type

text: freshwater metagenome

characteristic: secchi depth

characteristic: temp

text: Routine samples of German Lakes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_945:945.P1.A6.lane2.NoIndex.L002

characteristic: Submitter Id

characteristic: anonymized name

text: deepest point

characteristic: basin

characteristic: conductivity

characteristic: depth

text: freshwater metagenome, Lake Stechlin

characteristic: description

text: TRUE

text: large lake biome

text: freshwater lake

text: water

text: fresh water

text: TRUE

text: Germany:Stechlin Lake

text: Stechlin

text: freshwater metagenome

characteristic: organism

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

text: Missing: Not provided

text: fresh water

text: freshwater metagenome

characteristic: title

text: Routine samples of German Lakes


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_945:945.P1.A7.lane2.NoIndex.L002

text: deepest point

text: freshwater metagenome, Lake Stechlin

text: TRUE

characteristic: elevation

text: large lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: water

characteristic: env package

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: Germany:Stechlin Lake

characteristic: geo loc name

characteristic: host subject id

text: Stechlin

characteristic: lake

characteristic: latitude

characteristic: longitude

text: freshwater metagenome

characteristic: oxygen

characteristic: ph

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: Missing: Not provided

text: fresh water

characteristic: sample type

text: freshwater metagenome

characteristic: secchi depth

characteristic: temp

text: Routine samples of German Lakes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_945:945.P1.A8.lane2.NoIndex.L002

characteristic: Submitter Id

characteristic: anonymized name

text: deepest point

characteristic: basin

characteristic: conductivity

characteristic: depth

text: freshwater metagenome, Lake Stechlin

characteristic: description

text: TRUE

text: large lake biome

text: freshwater lake

text: water

text: fresh water

text: TRUE

text: Germany:Stechlin Lake

text: Stechlin

text: freshwater metagenome

characteristic: organism

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

text: Missing: Not provided

text: fresh water

text: freshwater metagenome

characteristic: title

text: Routine samples of German Lakes


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_945:945.P1.B10.lane2.NoIndex.L002

text: deepest point

text: freshwater metagenome, Lake Stechlin

text: TRUE

characteristic: elevation

text: large lake biome

characteristic: env biome

text: freshwater lake

characteristic: env feature

text: water

characteristic: env package

text: fresh water

text: TRUE

characteristic: extracted DNA avail now

text: Germany:Stechlin Lake

characteristic: geo loc name

characteristic: host subject id

text: Stechlin

characteristic: lake

characteristic: latitude

characteristic: longitude

text: freshwater metagenome

characteristic: oxygen

characteristic: ph

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

characteristic: public

text: Missing: Not provided

text: fresh water

characteristic: sample type

text: freshwater metagenome

characteristic: secchi depth

characteristic: temp

text: Routine samples of German Lakes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_945:945.P1.B11.lane2.NoIndex.L002

characteristic: Submitter Id

characteristic: anonymized name

text: deepest point

characteristic: basin

characteristic: conductivity

characteristic: depth

text: freshwater metagenome, Lake Stechlin

characteristic: description

text: TRUE

text: large lake biome

text: freshwater lake

text: water

text: fresh water

text: TRUE

text: Germany:Stechlin Lake

text: Stechlin

text: freshwater metagenome

characteristic: organism

text: Missing: Not provided

text: ANL

text: TRUE

text: TRUE

text: Missing: Not provided

text: fresh water

text: freshwater metagenome

text: Routine samples of German Lakes

characteristic: title