text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N705_S507.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N705_S508.H5H5YBBXX.s_8.r_1

tag: Namespace:Cancer Research UK Cambridge Institute

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: The murine multipotent myeloid progenitor cell line 416B was stably transduced with a TetOn construct of the Cbfb-Myh11 (CM) oncogene (type A cDNA), using an in-frame F2A-mCherry protein as a reporter. As a control, cells were alternatively transduced with a version of the construct lacking the CM cDNA. 416B cells were maintained in RPMI medium, supplemented with 10% fetal calf serum and antibiotics. Expression of the CM oncogene or mCherry was induced by treatment with 1 ug/ml of doxycycline, and induction was confirmed after 24 hours by measurement of mCherry levels by fluorescence activated cell sorting. Reverse transcription was performed in a final volume of 13.2 ul per well, containing 1 uM of oligo-dT (Sigma-Aldrich), 1.04 mM of each dNTP (ThermoFisher), 100 U of SuperScript II retrotranscriptase (Invitrogen/ThermoFisher), 5 U of RNase inhibitor (Ambion), 5 mM of DTT, 1 M of Betaine (Sigma-Alrich), 6 mM of MgCl$_2$ (Ambion) and 1 uM of TSO primer (Exiqon). Spike-in RNA was added such that each well contained a final volume of 0.1 ul of a 1:3,000,000 dilution of the ERCC RNA Spike-In Mix (Invitrogen/ThermoFisher) and 0.12 ul of a 1:3,000,000 dilution of the Spike-in RNA Variant (SIRV) Control Mix E0 (Lexogen). Cells were sorted into individual wells of a 96-well microtiter plate. Each well contained 2.3 ul of lysis buffer with RNAse inhibitor (Ambion) in a 0.2% (v/v) Triton X-100 solution. Preamplification was performed in a total volume of 27 ul that contained 13.5 ul of HiFi Hotstart ReadyMix (2x; KAPA Biosystems) and 0.1 uM of IS PCR primer (Sigma-Aldrich). After 23 cycles of amplification, samples were cleaned with 80% (v/v) of Ampure beads (Beckman Coulter). Sequencing libraries were prepared using the Nextera XT DNA sample preparation kit (Illumina).

characteristic: description

text: Doxycycline-inducible CBFB-MYH11 oncogene

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

characteristic: phenotype

text: Mus musculus

text: OK

characteristic: single cell well quality

characteristic: strain

type: has member


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N705_S517.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N706_S502.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N706_S503.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N706_S504.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: OK

characteristic: single cell well quality


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N706_S505.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N706_S506.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: title


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N706_S507.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N706_S508.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

characteristic: phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N706_S517.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N707_S502.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: strain


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N707_S503.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: title


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N707_S504.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N707_S505.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

characteristic: phenotype

text: Mus musculus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N707_S506.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: single cell well quality


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N707_S507.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: strain


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N707_S508.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: The murine multipotent myeloid progenitor cell line 416B was stably transduced with a TetOn construct of the Cbfb-Myh11 (CM) oncogene (type A cDNA), using an in-frame F2A-mCherry protein as a reporter. As a control, cells were alternatively transduced with a version of the construct lacking the CM cDNA. 416B cells were maintained in RPMI medium, supplemented with 10% fetal calf serum and antibiotics. Expression of the CM oncogene or mCherry was induced by treatment with 1 ug/ml of doxycycline, and induction was confirmed after 24 hours by measurement of mCherry levels by fluorescence activated cell sorting. Reverse transcription was performed in a final volume of 13.2 ul per well, containing 1 uM of oligo-dT (Sigma-Aldrich), 1.04 mM of each dNTP (ThermoFisher), 100 U of SuperScript II retrotranscriptase (Invitrogen/ThermoFisher), 5 U of RNase inhibitor (Ambion), 5 mM of DTT, 1 M of Betaine (Sigma-Alrich), 6 mM of MgCl$_2$ (Ambion) and 1 uM of TSO primer (Exiqon). Spike-in RNA was added such that each well contained a final volume of 0.1 ul of a 1:3,000,000 dilution of the ERCC RNA Spike-In Mix (Invitrogen/ThermoFisher) and 0.12 ul of a 1:3,000,000 dilution of the Spike-in RNA Variant (SIRV) Control Mix E0 (Lexogen). Cells were sorted into individual wells of a 96-well microtiter plate. Each well contained 2.3 ul of lysis buffer with RNAse inhibitor (Ambion) in a 0.2% (v/v) Triton X-100 solution. Preamplification was performed in a total volume of 27 ul that contained 13.5 ul of HiFi Hotstart ReadyMix (2x; KAPA Biosystems) and 0.1 uM of IS PCR primer (Sigma-Aldrich). After 23 cycles of amplification, samples were cleaned with 80% (v/v) of Ampure beads (Beckman Coulter). Sequencing libraries were prepared using the Nextera XT DNA sample preparation kit (Illumina).

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: title


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N707_S517.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Doxycycline-inducible CBFB-MYH11 oncogene

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N708_S502.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N708_S503.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: single cell well quality


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N708_S504.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: strain


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N708_S505.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N708_S506.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N708_S507.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

characteristic: phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N708_S508.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: single cell well quality


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N708_S517.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N709_S502.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: title


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N709_S503.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N709_S504.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N709_S505.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N709_S506.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: strain


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N709_S507.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: title


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N709_S508.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: The murine multipotent myeloid progenitor cell line 416B was stably transduced with a TetOn construct of the Cbfb-Myh11 (CM) oncogene (type A cDNA), using an in-frame F2A-mCherry protein as a reporter. As a control, cells were alternatively transduced with a version of the construct lacking the CM cDNA. 416B cells were maintained in RPMI medium, supplemented with 10% fetal calf serum and antibiotics. Expression of the CM oncogene or mCherry was induced by treatment with 1 ug/ml of doxycycline, and induction was confirmed after 24 hours by measurement of mCherry levels by fluorescence activated cell sorting. Reverse transcription was performed in a final volume of 13.2 ul per well, containing 1 uM of oligo-dT (Sigma-Aldrich), 1.04 mM of each dNTP (ThermoFisher), 100 U of SuperScript II retrotranscriptase (Invitrogen/ThermoFisher), 5 U of RNase inhibitor (Ambion), 5 mM of DTT, 1 M of Betaine (Sigma-Alrich), 6 mM of MgCl$_2$ (Ambion) and 1 uM of TSO primer (Exiqon). Spike-in RNA was added such that each well contained a final volume of 0.1 ul of a 1:3,000,000 dilution of the ERCC RNA Spike-In Mix (Invitrogen/ThermoFisher) and 0.12 ul of a 1:3,000,000 dilution of the Spike-in RNA Variant (SIRV) Control Mix E0 (Lexogen). Cells were sorted into individual wells of a 96-well microtiter plate. Each well contained 2.3 ul of lysis buffer with RNAse inhibitor (Ambion) in a 0.2% (v/v) Triton X-100 solution. Preamplification was performed in a total volume of 27 ul that contained 13.5 ul of HiFi Hotstart ReadyMix (2x; KAPA Biosystems) and 0.1 uM of IS PCR primer (Sigma-Aldrich). After 23 cycles of amplification, samples were cleaned with 80% (v/v) of Ampure beads (Beckman Coulter). Sequencing libraries were prepared using the Nextera XT DNA sample preparation kit (Illumina).

characteristic: description

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N709_S517.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Doxycycline-inducible CBFB-MYH11 oncogene

text: Mus musculus

text: Mus musculus

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N710_S502.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: single cell well quality


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N710_S503.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: strain


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N710_S504.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: title


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N710_S505.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N710_S506.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

characteristic: phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N710_S507.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: single cell well quality


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N710_S508.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: strain


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N710_S517.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N711_S502.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N711_S503.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N711_S504.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: single cell well quality


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N711_S505.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N711_S506.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: title


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N711_S507.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N711_S508.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: The murine multipotent myeloid progenitor cell line 416B was stably transduced with a TetOn construct of the Cbfb-Myh11 (CM) oncogene (type A cDNA), using an in-frame F2A-mCherry protein as a reporter. As a control, cells were alternatively transduced with a version of the construct lacking the CM cDNA. 416B cells were maintained in RPMI medium, supplemented with 10% fetal calf serum and antibiotics. Expression of the CM oncogene or mCherry was induced by treatment with 1 ug/ml of doxycycline, and induction was confirmed after 24 hours by measurement of mCherry levels by fluorescence activated cell sorting. Reverse transcription was performed in a final volume of 13.2 ul per well, containing 1 uM of oligo-dT (Sigma-Aldrich), 1.04 mM of each dNTP (ThermoFisher), 100 U of SuperScript II retrotranscriptase (Invitrogen/ThermoFisher), 5 U of RNase inhibitor (Ambion), 5 mM of DTT, 1 M of Betaine (Sigma-Alrich), 6 mM of MgCl$_2$ (Ambion) and 1 uM of TSO primer (Exiqon). Spike-in RNA was added such that each well contained a final volume of 0.1 ul of a 1:3,000,000 dilution of the ERCC RNA Spike-In Mix (Invitrogen/ThermoFisher) and 0.12 ul of a 1:3,000,000 dilution of the Spike-in RNA Variant (SIRV) Control Mix E0 (Lexogen). Cells were sorted into individual wells of a 96-well microtiter plate. Each well contained 2.3 ul of lysis buffer with RNAse inhibitor (Ambion) in a 0.2% (v/v) Triton X-100 solution. Preamplification was performed in a total volume of 27 ul that contained 13.5 ul of HiFi Hotstart ReadyMix (2x; KAPA Biosystems) and 0.1 uM of IS PCR primer (Sigma-Aldrich). After 23 cycles of amplification, samples were cleaned with 80% (v/v) of Ampure beads (Beckman Coulter). Sequencing libraries were prepared using the Nextera XT DNA sample preparation kit (Illumina).

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

characteristic: phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N711_S517.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Doxycycline-inducible CBFB-MYH11 oncogene

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N712_S502.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: strain


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N712_S503.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK

characteristic: title


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N712_S504.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N712_S505.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

characteristic: phenotype

text: Mus musculus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N712_S506.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: single cell well quality


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

text: E-MTAB-5522:SLX-11312.N712_S507.H5H5YBBXX.s_8.r_1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: strain


text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-5522:SLX-11312.N712_S508.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: induced CBFB-MYH11 oncogene expression

text: Mus musculus

text: OK

characteristic: title


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5522:SLX-11312.N712_S517.H5H5YBBXX.s_8.r_1

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

text: public

text: ArrayExpress

text: Trophoblast stem cell

text: trophoblast stem cell

text: house mouse

text: Protocols: Murine TSCs were kindly provided by Dr. Jennifer Nichols. TSCs were cultured on mouse embryonic fibroblast (MEF) feeders with TSC culturing medium (a combination of 70% MEF conditioned media (R&D systems) and 30% RPMI 1640, supplemented with 20% FBS, 2 mM L-glutamine, 1 mM sodium pyruvate, 100 uM B-mercaptoethanol, 25 ng/mL human recombinant FGF4 (R&D systems) and 1 ug/mL heparin (Tocris Bioscience)). To prepare for single-cell sorting, cells were harvested with trypsin and MEF feeders were depleted by plating the cells onto a gelatinised plate followed by incubation for 1h at 37 degrees C on TSC culturing medium. The supernatant containing TSCs was used for sorting. Reverse transcription was performed in a final volume of 13.2 ul per well, containing 1 uM of oligo-dT (Sigma-Aldrich), 1.04 mM of each dNTP (ThermoFisher), 100 U of SuperScript II retrotranscriptase (Invitrogen/ThermoFisher), 5 U of RNase inhibitor (Ambion), 5 mM of DTT, 1 M of Betaine (Sigma-Alrich), 6 mM of MgCl$_2$ (Ambion) and 1 uM of TSO primer (Exiqon). Spike-in RNA was added such that each well contained a final volume of 0.1 ul of a 1:3,000,000 dilution of the ERCC RNA Spike-In Mix (Invitrogen/ThermoFisher) and 0.12 ul of a 1:3,000,000 dilution of the Spike-in RNA Variant (SIRV) Control Mix E0 (Lexogen). Cells were sorted into individual wells of a 96-well microtiter plate. Each well contained 2.3 ul of lysis buffer with RNAse inhibitor (Ambion) in a 0.2% (v/v) Triton X-100 solution. Preamplification was performed in a total volume of 27 ul that contained 13.5 ul of HiFi Hotstart ReadyMix (2x; KAPA Biosystems) and 0.1 uM of IS PCR primer (Sigma-Aldrich). After 23 cycles of amplification, samples were cleaned with 80% (v/v) of Ampure beads (Beckman Coulter). Sequencing libraries were prepared using the Nextera XT DNA sample preparation kit (Illumina).

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: OK


text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Trophoblast stem cell

characteristic: cell line

text: trophoblast stem cell

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: 50 cells

characteristic: single cell well quality


text: Cancer Research UK Cambridge Institute

text: public

text: ArrayExpress

text: Trophoblast stem cell

text: trophoblast stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: wild type phenotype

text: Mus musculus

text: no cell

characteristic: strain


text: FUDAN UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:FUDAN UNIVERSITY

characteristic: collection date

text: Anaerobic reactor

characteristic: environment (biome)

text: anaerobic

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: Salmonella enterica

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Salmonella enterica

characteristic: common name

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

characteristic: subject id


text: Salmonella enterica

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

text: Salmonella enterica

text: Salmonella

characteristic: genus

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

type: AMR curated data - CABBAGE

value: nalidixic acid

value: broth dilution

value: mg/L

value: Salmonella enterica

value: gentamicin

value: agar dilution

value: sulfisoxazole

value: tetracycline

value: ampicillin

value: trimethoprim-sulfamethoxazole

value: ciprofloxacin

value: sulfamethoxazole

value: trimethoprim

value: chloramphenicol


text: Department of Clinical Research

text: public

tag: Namespace:Department of Clinical Research

text: NOD high incidence

characteristic: description

text: metagenome

text: metagenome

text: microbes T1D NOD

characteristic: title


characteristic: ENA-CHECKLIST

text: Department of Clinical Research

text: public

text: NOD low incidence

text: metagenome

text: metagenome

text: microbes T1D NOD


characteristic: ENA-FIRST-PUBLIC

text: Department of Clinical Research

text: public

text: NOD low incidence 3 weeks old

text: metagenome

text: metagenome

text: microbes T1D NOD


characteristic: ENA-LAST-UPDATE

text: Department of Clinical Research

text: public

text: NOD low incidence 5 weeks old

text: metagenome

text: metagenome

text: microbes T1D NOD


characteristic: External Id

text: Department of Clinical Research

text: public

text: NOD high incidence 3 weeks old

text: metagenome

text: metagenome

text: microbes T1D NOD


text: Department of Clinical Research

characteristic: INSDC center name

text: public

text: NOD 5 weeks old born Low incidence moved to high Incidence

text: metagenome

text: metagenome

text: microbes T1D NOD


text: U-PSUD

text: public

characteristic: Submitter Id

text: University Paris-Sud/ CNRS/ AgroParis Tech

characteristic: associated institution

text: conidiospores

characteristic: cell type

characteristic: culture collection

characteristic: funding project

text: Cheddar cheese

characteristic: isolation source

text: Penicillium carneum

text: Penicillium carneum


text: U-PSUD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: conidiospores

text: CBS128137;IBT29551;DTO70-G9; CBS20501

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Wooden crate in cold-store of apples

text: Penicillium psychrosexualis

characteristic: organism

text: Penicillium psychrosexualis


text: U-PSUD

text: public

characteristic: SRA accession

text: conidiospores

text: LCP05616; MUCL40611T

characteristic: description

text: Denmark

text: Mouldy rye bread

text: Penicillium paneum

text: Penicillium paneum

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: U-PSUD

text: public

text: conidiospores

text: LCP05617; MUCL40792

text: Belgium

text: Silage

text: Penicillium paneum

text: Penicillium paneum


characteristic: External Id

text: U-PSUD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: conidiospores

text: LCP05618; MUCL47608

text: France

text: Cocoa

text: Penicillium paneum

text: Penicillium paneum


text: U-PSUD

text: public

characteristic: associated institution

text: conidiospores

characteristic: cell type

text: LCP06038; MUCL19157

characteristic: culture collection

text: Belgium

text: Maize silage

text: Penicillium paneum

text: Penicillium paneum


text: U-PSUD

characteristic: INSDC first public

text: public

text: conidiospores

characteristic: funding project

text: Bread

characteristic: isolation source

text: Penicillium paneum

text: Penicillium paneum


text: U-PSUD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: conidiospores

text: Mouldy rye bread

text: Penicillium paneum

text: Penicillium paneum


text: U-PSUD

text: public

characteristic: SRA accession

text: conidiospores

text: Penicillium paneum

characteristic: organism

text: Penicillium paneum


text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

characteristic: common name

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Roquefort cheese

text: Penicillium roqueforti

text: Penicillium roqueforti

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

text: Brewery environment

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: associated institution

text: conidiospores

characteristic: cell type

text: Blue cheese mold

text: France

text: Brioche under plastic wrap

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC first public

text: public

text: conidiospores

text: Blue cheese mold

characteristic: culture collection

characteristic: funding project

text: France

text: Fruit compote

characteristic: isolation source

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: conidiospores

text: Blue cheese mold

text: France

text: Fruite compte

text: Penicillium roqueforti

characteristic: organism

text: Penicillium roqueforti


text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

characteristic: common name

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Wood

text: Penicillium roqueforti

text: Penicillium roqueforti

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

text: LCP04157T;CBS221.30;NRRL849;ATCC 10110;ATCC 1129;CECT 2905;IBT 6754;IFO 5459;IMI 024313;LSHB P93;NCTC 588;QM 1937

text: France

text: Roquefort cheese

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: associated institution

text: conidiospores

characteristic: cell type

text: Blue cheese mold

text: France

text: Strawberry sorbet

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC first public

text: public

text: conidiospores

text: Blue cheese mold

characteristic: culture collection

characteristic: funding project

text: France

text: Inner fridge wall

characteristic: isolation source

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: conidiospores

text: Blue cheese mold

text: LCP06036; MUCL18048

text: Belgium

text: Cork of wine bottle

text: Penicillium roqueforti

characteristic: organism

text: Penicillium roqueforti


text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

characteristic: common name

text: LCP06037; MUCL38015

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Wood in process of drying in the open air, Quercus sp.

text: Penicillium roqueforti

text: Penicillium roqueforti

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

text: LCP06039; CBS498.73; MUCL34883; ATCC 24720;FRR 1480;IBT 19476;IMI 174718;IMI 291199;VKM F-1748

text: Russia

text: Fruit from Malus sylvestris

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: associated institution

text: conidiospores

characteristic: cell type

text: Blue cheese mold

text: LCP06040; MUCL35036

text: France

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC first public

text: public

text: conidiospores

text: Blue cheese mold

text: LCP06043; MUCL46746

characteristic: culture collection

characteristic: funding project

text: Belgium

text: Silage

characteristic: isolation source

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: conidiospores

text: Blue cheese mold

text: LCP06059; CBS116877

text: Netherlands

text: Silage from grass

text: Penicillium roqueforti

characteristic: organism

text: Penicillium roqueforti


text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

characteristic: common name

text: LCP06060; CBS112579; NRRL1165; IBT16407;T358

characteristic: description

text: Canada

characteristic: geographic location (country and/or sea)

text: Sulphite liquor

text: Penicillium roqueforti

text: Penicillium roqueforti

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

text: LCP06064; CBS479.84; IBT21543

text: Denmark

text: Mouldy baker's yeast

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: associated institution

text: conidiospores

characteristic: cell type

text: Blue cheese mold

text: France

text: Roquefort cheese

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC first public

text: public

text: conidiospores

text: Blue cheese mold

characteristic: culture collection

characteristic: funding project

text: France

text: Blue cheese Cremeux du Puy

characteristic: isolation source

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: conidiospores

text: Blue cheese mold

text: Italy

text: Blue cheese Gorgonzola

text: Penicillium roqueforti

characteristic: organism

text: Penicillium roqueforti


text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

characteristic: common name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Blue stilton cheese

text: Penicillium roqueforti

text: Penicillium roqueforti

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

text: France

text: Blue chee roche montagne

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: associated institution

text: conidiospores

characteristic: cell type

text: Blue cheese mold

text: USA

text: Blue cheese from Florida

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC first public

text: public

text: conidiospores

text: Blue cheese mold

characteristic: culture collection

characteristic: funding project

text: United Kingdom

text: Bath blue, blue cheese

characteristic: isolation source

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: conidiospores

text: Blue cheese mold

text: USA

text: Blue cheese from Massachusetts

text: Penicillium roqueforti

characteristic: organism

text: Penicillium roqueforti


text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

characteristic: common name

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Cambozola blue cheese

text: Penicillium roqueforti

text: Penicillium roqueforti

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: U-PSUD

text: public

text: conidiospores

text: Blue cheese mold

text: Switzerland

text: Jersey Blue, blue cheese

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: INRA/French National History Museum

characteristic: associated institution

characteristic: associated publication

text: conidiospores

characteristic: cell type

text: Blue cheese mold

text: LCP05885; CBS307.48; NRRL 1951 ATCC28089;Wis. 51-20; Wis. 48-70; ATCC 9480

text: France

text: Silage

text: Penicillium roqueforti

text: Penicillium roqueforti


text: U-PSUD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: INRA/French National History Museum

text: conidiospores

text: Blue cheese mold

characteristic: culture collection

characteristic: funding project

text: Blue cheese

characteristic: isolation source

text: Penicillium roqueforti

text: Penicillium roqueforti


text: KING ABDULAZIZ UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:KING ABDULAZIZ UNIVERSITY

text: metagenome

characteristic: organism

text: metagenome


characteristic: ENA-CHECKLIST

text: JLU GIESSEN

text: public

tag: Namespace:JLU GIESSEN

text: Endozoicomonas sp. S-B4-1U type strain sequence

characteristic: description

text: Endozoicomonas sp. S-B4-1U

text: Endozoicomonas sp. S-B4-1U

text: Endozoicomonas sp. S-B4-1U

characteristic: title


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


16S spiking

text: RADBOUD UNIVERSITY NIJMEGEN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 16S spiking

tag: Namespace:RADBOUD UNIVERSITY NIJMEGEN

characteristic: Submitter Id

characteristic: collection date

text: bioreactor

characteristic: environment (biome)

text: anaerobic bioreactor

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: uncultured virus

text: anaerobic reactor metarvirome

characteristic: project name

text: uncultured virus

text: Ion Torrent PGM

characteristic: sequencing method

text: metavirome from a AOM-associated archaea and Methylomirabilis oxyfera reactor


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RADBOUD UNIVERSITY NIJMEGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: bioreactor

text: anaerobic bioreactor

text: water

text: Netherlands

text: metagenome

text: uncultured virus

characteristic: organism

text: anaerobic reactor metarvirome

text: uncultured virus

text: Ion Torrent PGM

characteristic: title


text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Iowa State University

characteristic: Submitter Id

text: Yorkshire

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: common name

text: Protocols: Whole blood was collected into Tempus tubes from jugular vein immediately before initial LPS injection and 2, 6 24 hours post initial injection All pigs were housed in individual metabolism pens, had free access to water and were fed a corn-soy-based diet twice daily, and feed restricted (1.5 kg/day) as previously described. After a 9-day adaptation period pigs were randomly assigned within line to either a control (n = 6, three pigs per line) or LPS challenge (n = 8, four pigs per line) group. Pigs in the challenge group were then repeatedly challenged with an intramuscular injection of 30, 36, 39, and 42 µg/kg BW of LPS from E. coli O5:B5 (sigma-Aldrich, St. Louis, MO) dissolved in saline solution at time points 0, 48, 96, and 144 hours post initial injection (hpi) to compensate for LPS tolerance after initial injection, respectively, while animals in the control group were injected with an equivalent volume of saline solution at the equivalent time points. Total RNA was extracted from the 32 blood samples of the treatment group in Replicate 2, collected at 0, 2, 6, and 24 hpi, by using preserved blood RNA purification kit I (Norgen Biotek Corp, Thorold, Ontario) per manufacturer’s instruction. On-column DNA digestion was performed as described using DNase I (Qiagen, Valencia, CA). Globin transcripts (HBB and HBA) were depleted by following an RNase H-mediated method. The quantity and integrity of the RNA were monitored by using Nanodrop 2000 (Thermo Scientific, Waltham, MA) and Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA) before and after globin depletion [176]. The efficiency of globin depletion of each sample was checked by conventional RT-qPCR with β-actin and GAPDH as the internal controls. Globin depletion efficiencies for all RNA samples were above 85%. Libraries were constructed by following Truseq library construction kit v2.0 by Beijing Genome Institue (Hong Kong)

characteristic: description

characteristic: growth condition

characteristic: hematocrit

characteristic: hemoglobin measurement

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: blood

characteristic: organism part

text: high residual feed intake

characteristic: phenotype

characteristic: platelet count

text: Sus scrofa

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Iowa State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Yorkshire

text: ArrayExpress

text: pig

text: housed in individual metabolism pens, had free access to water and were fed a corn-soy-based diet twice daily, and feed restricted (1.5 kg/day)

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blood

text: low residual feed intake

text: Sus scrofa

text: female


text: Iowa State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Yorkshire

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: common name

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: blood

text: high residual feed intake

text: Sus scrofa

text: female

characteristic: title


text: public

tag: Namespace:Genetics and Genomic Medicine UCL GOS Institute of Child Health

text: ArrayExpress

text: B cell

characteristic: cell type

text: human

text: Protocols: CD19+ B cells were sorted from freeze-thawed peripheral blood mononuclear cells (PBMC) by flow cytometry (FACS Aria III), using CD19 PE-Cy7 (BioLegend). DAPI was used to exclude dead cells. Sorted B cell RNA was extracted using the Arcturus PicoPure RNA Isolation Kit. Samples were processed using Illumina’s TruSeq Stranded mRNA LT sample preparation kit (p/n RS-122-2101) according to manufacturer’s instructions.

text: normal

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genetics and Genomic Medicine UCL GOS Institute of Child Health

characteristic: INSDC last update

text: public

text: ArrayExpress

text: B cell

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: B cell

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: B cell

text: human

characteristic: common name

characteristic: description

text: juvenile dermatomyositis

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


text: public

text: ArrayExpress

text: B cell

characteristic: cell type

text: human

text: juvenile dermatomyositis

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KAROLINSKA INSITUTET

text: public

tag: Namespace:KAROLINSKA INSITUTET

characteristic: cell line

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hussain Research Group

characteristic: INSDC last update

text: public

tag: Namespace:Hussain Research Group

text: human

text: 500 ng of gDNA fragmented through a 15 gauge needle 10 times, repaired, purified, end-repaired, ligated, purified and sequenced on R9.4/FLO-MIN106 flow cell on a minION Mk1B, basecalled with Metrichor/EPI2ME

text: Homo sapiens

text: Homo sapiens

text: HAP1 Native DNA


text: Samsung Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:Samsung Genome Institute

text: human

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF MANCHESTER

characteristic: Submitter Id

text: fava bean

text: Cloned partial trn-L tRNA DNA sequence, amplified from the DNA extract of a pottery swab sample.

text: Vicia faba

characteristic: organism

text: Vicia faba


text: FONDAZIONE EDMUND MACH

text: public

tag: Namespace:FONDAZIONE EDMUND MACH

characteristic: collection date

text: wine grape

characteristic: common name

text: Bacterial Endophytic community of Italian grapevine studied through pyrosequencing

characteristic: description

text: Natural and intervened landscapes of wine growing areas

characteristic: environment (biome)

text: Grapevine crops

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

text: 46°04′04″ N

characteristic: geographic location (latitude)

text: 11°07′15″ E

characteristic: geographic location (longitude)

text: Grapevine

characteristic: host common name

text: mimarks-survey

characteristic: investigation type

text: Vitis vinifera

text: plant-associated

characteristic: plant-associated environmental package

text: Mecagrafic

characteristic: project name

text: Vitis vinifera

text: pyrosequencing

characteristic: sequencing method

text: Bacterial Endophytic communities from Grapevine


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Tropical Medicine, Antwerp

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute of Tropical Medicine, Antwerp

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

characteristic: title


ALME

text: Institute of Tropical Medicine, Antwerp

text: public

text: ALME

characteristic: Submitter Id

text: Trypanosoma congolense

characteristic: common name

text: Trypanosoma congolense

characteristic: description

text: Trypanosoma congolense

characteristic: organism

text: Trypanosoma congolense

text: ALME


BEKA

text: Institute of Tropical Medicine, Antwerp

text: public

text: BEKA

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: BEKA


CHIPOPELA

text: Institute of Tropical Medicine, Antwerp

text: public

text: CHIPOPELA

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: CHIPOPELA


DIND

text: Institute of Tropical Medicine, Antwerp

text: public

text: DIND

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: DIND


MATADI

text: Institute of Tropical Medicine, Antwerp

text: public

text: MATADI

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: MATADI


POUSS

text: Institute of Tropical Medicine, Antwerp

text: public

text: POUSS

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: POUSS


ZRE-AGRIUMBE

text: Institute of Tropical Medicine, Antwerp

text: public

text: ZRE-AGRIUMBE

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: ZRE-AGRIUMBE


ZRE-NKUIYI

text: Institute of Tropical Medicine, Antwerp

text: public

text: ZRE-NKUIYI

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: Trypanosoma congolense

text: ZRE-NKUIYI


text: UNIVERSITY OF SZEGED

text: public

tag: Namespace:UNIVERSITY OF SZEGED

text: vero

characteristic: cell type

characteristic: collection date

text: HSV-1 transcriptome analysis by PacBio long-read sequencing

text: Human herpesvirus 1 strain KOS

text: Human herpesvirus 1 strain KOS

text: HSV-1 transcriptom


text: IFR

text: public

text: murine feces

characteristic: isolation source

text: Bacteroides ovatus

text: Bacteroides ovatus

text: Bacteroides ovatus transconjugant 4


text: female

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Female

characteristic: gender

text: Mus musculus

text: Mus musculus

characteristic: subject id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Div of Infection & Immunity, Farr Institute of Health Informatics Research, University College London, 222 Euston Road, London, NW1 2DA, United Kingdom

characteristic: collecting institution

text: PANGEA_HIV Project

characteristic: collector name

text: human

text: BW

characteristic: country

text: HIV Sample PANGEA Project

text: Botswana

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: HIV Sample PANGEA Project


characteristic: ENA-CHECKLIST

text: UCL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: PANGEA_HIV Project

text: human

characteristic: common name

text: ZM

text: HIV Sample PANGEA Project

characteristic: description

text: Zambia

text: human

text: Homo sapiens

text: restricted access

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: HIV Sample PANGEA Project

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collecting institution

text: PANGEA_HIV Project

characteristic: collector name

text: human

text: UG

characteristic: country

text: HIV Sample PANGEA Project

text: Uganda

text: human

text: Homo sapiens

text: restricted access

text: Homo sapiens

text: Homo sapiens

text: HIV Sample PANGEA Project


4 Acartia tonsa embryo total mRNA

characteristic: ENA-CHECKLIST

text: ROSKILDE UNIVERSITY

characteristic: INSDC last update

text: public

text: 4 Acartia tonsa embryo total mRNA

tag: Namespace:ROSKILDE UNIVERSITY

text: yes

characteristic: culture

text: Acartia tonsa embryos for transcriptome sequencing

text: embryos

characteristic: dev stage

characteristic: number of animals

text: Acartia tonsa

text: Acartia tonsa

text: both

characteristic: sex

text: 4 Acartia tonsa embryo total mRNA


name: 5 Acartia tonsa naupliae and copepodite total mRNA

tag: attribute

text: ROSKILDE UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: yes

text: starved naupliae and copepodite Acartia tonsa for transcriptome sequencing

characteristic: description

text: naupliae and copepodites

text: Acartia tonsa

text: Acartia tonsa

text: both


6 Acartia tonsa adult total mRNA

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROSKILDE UNIVERSITY

text: public

text: 6 Acartia tonsa adult total mRNA

text: yes

text: starved adult Acartia tonsa for transcriptome sequencing

text: adult

text: Acartia tonsa

characteristic: organism

text: Acartia tonsa

text: both

text: 6 Acartia tonsa adult total mRNA

characteristic: title


characteristic: External Id

text: Zhang Zhang

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Zhang Zhang

characteristic: collection date

text: The assemble of Rhizophora apucluata based on the Illumina and SMRT seuqencing

text: Xinnian Li

characteristic: identified by

text: Rhizophora apiculata

text: Rhizophora apiculata

text: leaf

characteristic: tissue type

text: The first genome of Rhizophora apiculata


characteristic: ENA-CHECKLIST

text: Zhang Zhang

characteristic: INSDC last update

text: public

text: This assemble is based on the Illumina and SMRT sequencing.

text: Xinnian Li

text: Avicennia marina subsp. marina

text: Avicennia marina subsp. marina

text: leaf

text: The first genome of Avicennia marina

text: marina

characteristic: variety


text: Zhang Zhang

text: public

characteristic: INSDC status

text: The first genome of Sonneratia abla which is based on the Illumina and SMRT sequencing.

text: Xinnian Li

text: Sonneratia alba

text: Sonneratia alba

text: leaf

text: The first genome of Sonneratia abla


text: public

characteristic: SRA accession

tag: Namespace:GFZ German Research Centre for Geosciences

text: DNA extract from soil sample from site Soos, Replicate No. 1.

text: freshwater biome

characteristic: environment (biome)

text: mofette

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

unit: m

characteristic: geographic location (altitude)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Eger Rift, NW Bohemia

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: EgerRift

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: llumina MiSeq

characteristic: sequencing method

text: 16S rDNA

characteristic: target gene

text: Soos soil samples. Rep1.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFZ German Research Centre for Geosciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: DNA extract from soil sample from site Soos, Replicate No. 2.

characteristic: description

text: freshwater biome

text: mofette

text: sediment

text: Czech Republic

text: Eger Rift, NW Bohemia

text: mimarks-survey

text: metagenome

characteristic: organism

text: EgerRift

text: metagenome

text: sediment

text: llumina MiSeq

text: 16S rDNA

text: Soos soil samples. Rep2.

characteristic: title


text: public

characteristic: SRA accession

text: DNA extract from soil sample from site Plesn�, Replicate No. 1.

text: freshwater biome

characteristic: environment (biome)

text: mofette

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

characteristic: geographic location (altitude)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Eger Rift, NW Bohemia

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: EgerRift

characteristic: project name

text: metagenome

text: sediment

text: llumina MiSeq

text: 16S rDNA

text: Plesna soil samples. Rep1.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: DNA extract from soil sample from site Plesn�, Replicate No. 2.

text: freshwater biome

text: mofette

text: sediment

text: Czech Republic

text: Eger Rift, NW Bohemia

text: mimarks-survey

text: metagenome

text: EgerRift

text: metagenome

text: sediment

characteristic: sediment environmental package

text: llumina MiSeq

characteristic: sequencing method

text: 16S rDNA

characteristic: target gene

text: Plesna soil samples. Rep2.


text: public

characteristic: SRA accession

text: DNA extract from soil sample from site Bubl�k Central, Replicate No. 1.

characteristic: description

text: freshwater biome

characteristic: environment (biome)

text: mofette

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

characteristic: geographic location (altitude)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Eger Rift, NW Bohemia

text: mimarks-survey

text: metagenome

characteristic: organism

text: EgerRift

text: metagenome

text: sediment

text: llumina MiSeq

text: 16S rDNA

text: Bublak soil samples. Rep1.

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: DNA extract from soil sample from site Bubl�k Central, Replicate No. 2.

text: freshwater biome

text: mofette

text: sediment

text: Czech Republic

text: Eger Rift, NW Bohemia

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: EgerRift

characteristic: project name

text: metagenome

text: sediment

text: llumina MiSeq

text: 16S rDNA

text: Bublak soil samples. Rep2.


text: public

characteristic: SRA accession

tag: Namespace:Research Fellow Tremethick Lab Department of Genome Sciences The John Curtin School of Medical Research The Australian National University

text: ArrayExpress

characteristic: broker name

text: MDCK

characteristic: cell line

text: Epithelial cell of kidney

characteristic: cell type

text: dog

characteristic: common name

text: Protocols: MDCK cells were maintained in DMEM growth medium supplemented with 10% Foetal Bovine Serum (FBS) Total RNA was extracted usign Qiagen RNAeasy kit following manufacturer's instructions. Libraries were constructed according to the Illumina TruSeq stranded mRNA protocol with poly-A enrichment.

characteristic: description

characteristic: growth condition

text: Canis lupus familiaris

text: Canis lupus familiaris

text: kidney

characteristic: organsim part

text: Canis lupus familiaris

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Research Fellow Tremethick Lab Department of Genome Sciences The John Curtin School of Medical Research The Australian National University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: MDCK

text: Epithelial cell of kidney

text: dog

text: MDCK cells were maintained in DMEM growth medium supplemented with 10% Foetal Bovine Serum (FBS)

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: kidney

text: Canis lupus familiaris

text: female

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: MDCK

text: Epithelial cell of kidney

text: dog

text: Protocols: MDCK cells were maintained in DMEM growth medium supplemented with 10% Foetal Bovine Serum (FBS) Cells for lentiviral transduction were grown to 70% confluency. A final concentration of 4μg/mL polybrene (SIGMA) and 10mM HEPES were combined with lentiviral-containing supernatent pre-warmed to 37 ̊C and added to cells. After incubation at 37 ̊C/5%CO2 for 24 hours, lentiviral-containing supernatant was removed and replaced with fresh complete medium. Cells were allowed to grow for another 24 hours, before harvest. Cells were washed and resuspended in 1% FBS/PBS. A 100% population of transduced cells were obtained by sterile cell sorting for GFP tagged cells. Total RNA was extracted usign Qiagen RNAeasy kit following manufacturer's instructions. Libraries were constructed according to the Illumina TruSeq stranded mRNA protocol with poly-A enrichment.

text: Canis lupus familiaris

text: Canis lupus familiaris

text: kidney

text: Canis lupus familiaris

text: female


text: public

text: ArrayExpress

characteristic: broker name

text: MDCK

characteristic: cell line

text: Epithelial cell of kidney

characteristic: cell type

text: dog

characteristic: common name

text: Protocols: MDCK cells were maintained in DMEM growth medium supplemented with 10% Foetal Bovine Serum (FBS) For TGF-beta treatment, wildtype MDCK were stimulated in culture by adding 5ng of TGF-beta to the medium. TGF-beta was added with every passage of cells, to maintain stimulus. Total RNA was extracted usign Qiagen RNAeasy kit following manufacturer's instructions. Libraries were constructed according to the Illumina TruSeq stranded mRNA protocol with poly-A enrichment.

text: Canis lupus familiaris

text: Canis lupus familiaris

text: kidney

text: Canis lupus familiaris

text: female


text: OREGON STATE UNIVERS

text: public

tag: Namespace:OREGON STATE UNIVERS

text: ArrayExpress

text: long-grained rice

text: Protocols: A leaf punch of approximately 1 centimeter in diameter was collected from plants DNA Leaf tissue from each rice variety was extracted using a Qiagen DNeasy kit per manufacturer's protocols. DNA from each rice variety was added to Promega PCR Master Mix as per manufacturer's protocol for a 50 microliter reaction. Purification of PCR product was obtained by precipitating with a 9:1 ratio of 3M sodium acetate and 1:3 ratio of 100% ethanol. After 20 minute incubation at -20 Celsius, samples were centrifuged for 30 minutes. Ethanol was removed from the sample and the pellet containing purified PCR product was dried. PCR product was resuspended in double distilled water.

characteristic: description

text: Oryza sativa Indica Group

text: Oryza sativa Indica Group

text: leaf

characteristic: organism part

text: Oryza sativa Indica Group

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: OREGON STATE UNIVERS

text: public

text: ArrayExpress

text: long-grained rice

text: Oryza sativa Indica Group

text: Oryza sativa Indica Group

text: leaf

text: Oryza sativa Indica Group

text: IR29 PI 393986 OR06AR SD


characteristic: External Id

text: OREGON STATE UNIVERS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: rice

text: Oryza sativa

text: Oryza sativa

text: leaf

text: Oryza sativa


text: OREGON STATE UNIVERS

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Japanese rice

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: leaf

text: Oryza sativa Japonica Group

text: Nipponbare GSOR: 1000

text: Nipponbare-RBOHB-SSR

characteristic: title


E-MTAB-5560:Nona Bokra-RBOHB-SSR

text: OREGON STATE UNIVERS

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5560:Nona Bokra-RBOHB-SSR

characteristic: Submitter Id

text: ArrayExpress

text: rice

text: Oryza sativa

text: Oryza sativa

text: leaf

text: Oryza sativa

text: Nona Bokra-RBOHB-SSR


text: OREGON STATE UNIVERS

text: public

text: ArrayExpress

characteristic: broker name

text: long-grained rice

text: Oryza sativa Indica Group

text: Oryza sativa Indica Group

text: leaf

text: Oryza sativa Indica Group

text: Pokkali GSOR: 312020

text: Pokkali-RBOHB-SSR


text: UNIVERSITY OF GOTHENBURG

text: public

tag: Namespace:UNIVERSITY OF GOTHENBURG

text: human

characteristic: common name

text: Bacterial 16S rDNA (V1-V2 region) obtained from atherosclerotic plaques region A

text: Homo sapiens

text: Homo sapiens

characteristic: specimen voucher

text: Atherosclerotic plaque

characteristic: tissue type


text: UNIVERSITY OF GOTHENBURG

text: public

text: human

text: Bacterial 16S rDNA (V1-V2 region) obtained from atherosclerotic plaques region B

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Atherosclerotic plaque


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GOTHENBURG

text: public

text: human

text: Bacterial 16S rDNA (V1-V2 region) obtained from atherosclerotic plaques region C

text: Homo sapiens

text: Homo sapiens

text: Atherosclerotic plaque


characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

tag: Namespace:HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: collection date

text: nA (timepoint)

text: urine

characteristic: environment (biome)

text: urine

characteristic: environment (feature)

text: urine

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: healthy control group

characteristic: host disease status

text: female

characteristic: host sex

text: human-vaginal

characteristic: human vaginal environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: The vaginal and urinary microbiota in health, during BV and after treatment

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: urinary and vaginal fluid microbiota amplicon sequencing


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: nA (timepoint)

text: urine

text: urine

text: urine

text: Germany

text: healthy control group

text: male

text: human-vaginal

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Miseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

characteristic: collection date

text: 1 (timepoint)

characteristic: description

text: urine

characteristic: environment (biome)

text: urine

characteristic: environment (feature)

text: urine

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: BV patients study group

text: female

text: human-vaginal

text: metagenome

text: metagenome

text: metagenome

text: Illumina Miseq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2 (timepoint)

text: urine

text: urine

text: urine

text: Germany

text: BV patients study group

characteristic: host disease status

text: female

characteristic: host sex

text: human-vaginal

characteristic: human vaginal environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: 1 (timepoint)

characteristic: description

text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: BV patients study group

text: female

text: human-vaginal

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Miseq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2 (timepoint)

text: vagina

characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

text: vaginal fluid

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: BV patients study group

text: female

text: human-vaginal

text: metagenome

text: metagenome

text: metagenome

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 3 (timepoint)

text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: BV patients study group

characteristic: host disease status

text: female

characteristic: host sex

text: human-vaginal

characteristic: human vaginal environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: 4 (timepoint)

characteristic: description

text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: BV patients study group

text: female

text: human-vaginal

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Miseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 5 (timepoint)

text: vagina

characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

text: vaginal fluid

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: BV patients study group

text: female

text: human-vaginal

text: metagenome

text: metagenome

text: metagenome

text: Illumina Miseq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: nA (timepoint)

text: vagina

text: vagina

text: vaginal fluid

text: Germany

text: healthy control group

characteristic: host disease status

text: female

characteristic: host sex

text: human-vaginal

characteristic: human vaginal environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FUDAN UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:FUDAN UNIVERSITY

characteristic: Submitter Id

characteristic: collection date

text: anaerobic reactor

text: anaerobic

text: sludge

text: China

text: metagenome

text: metagenome

characteristic: organism

text: Hydrogen and methane production from sewage sludge

text: metagenome

text: Hiseq 2500

text: H2 and CH4

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


characteristic: ENA-CHECKLIST

text: CeBiTec, Technology Platform Genomics

text: public

tag: Namespace:CeBiTec, Technology Platform Genomics

text: Germany

characteristic: geographic location (country and/or sea)

text: Bottom of the river Rhine

characteristic: geographic location (region and locality)

text: mud

characteristic: isolation source

text: Xanthomonas campestris pv. campestris

text: Xanthomonas campestris pv. campestris

text: Sample of Xanthomonas campestris pv. campestris B100


characteristic: ENA-FIRST-PUBLIC

text: Wellcome Trust Sanger Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Wellcome Trust Sanger Institute

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: mouse embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: Wildtype E14 mESC were cultured under standard culture conditions in Knockout DMEM containing 15% Fetal Calf Serum, 1x Penicillin-Streptomycin-Glutamine, 1x NEAA 2-mercaptoethanol and 1000U Leukemia Inhibitory Factor. Trypisnised single mESC suspension is passed through 30micron filter to remove and clumps. Scripts with different method workflows were downloaded from Fluidigm Script Hub. Approx 3000 single mESC are loaded onto 5-10 micron Fluidigm C1 Single-Cell Auto Prep IFC and cell capture was performed as per manufacturers protocol. Two kinds of spike-ins (ERCC-#4456740 and SIRV-E2 #SKU025.03) were mixed (0.5ul 1:500 diluted ERCCs + 0.6ul 1:500 diluted SIRVs) and added to respective Lysis buffer. The subsequent steps are performed as per manufacturers protocol or described on Fluidigm Script hub. The cDNA from each single chamber within C1-IFC was harvested and diluted as per manufacturer protocol. Harvested cDNA from single cells was quantified and libraries were made using Nextera XT DNA sample preparation kit (Illumina) utilising 96 dual barcoded indices. Library pooling was performed post AMPure XP beads (Agencourt Biosciences) clean up and sequenced on HiSeq2500 (v4) using paired end sequencing (75 or 125bp) at the Wellcome Trust Sequencing facility following Wellcome Trust Sequencing guidelines.

characteristic: description

text: Serum + LIF condition

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain


I

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sciences Faculty

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: I

tag: Namespace:Sciences Faculty

characteristic: Submitter Id

characteristic: collection date

text: activated sludge originally, centrate, methane, ammonia

characteristic: environment (biome)

text: wastewater treatment plant, aerobic tank

characteristic: environment (feature)

text: wastewater, sludge

characteristic: environment (material)

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: organism

text: Advanced Biological Processes for the Abatement of the Greenhouse Gases CH4 and N2O: Targeting the Direct Gas-Cell Mass Transport and Process Microbiology

characteristic: project name

text: aerobic tank

characteristic: reactor type

text: wastewater metagenome

text: MiSeq Illumina Sequencing

characteristic: sequencing method

text: Activated sludge from an aerobic tank (secondary treatment) from the Wastewater Treatment Plant of Valladolid

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sciences Faculty

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: activated sludge originally, centrate, methane continuous feeding, ammonia

text: aerobic biofilter, inorganic packed bed, continuous CH4 feeding

text: methanotrophic biofilm growing on inorganic Kaldnes rings

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome

text: wastewater metagenome

text: 2.3-L methanotrophic biofilter

text: wastewater metagenome

text: MiSeq Illumina Sequencing

text: Methanotrophic biofilm grown with wastewater centrate under continuous CH4 feeding

text: wastewater/sludge


text: Sciences Faculty

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: activated sludge originally, centrate, methane starvation, ammonia

characteristic: environment (biome)

text: aerobic biofilter, inorganic packed bed, alternate CH4 feeding

characteristic: environment (feature)

characteristic: environment (material)

text: Spain

characteristic: geographic location (latitude)

text: metagenome

text: wastewater metagenome

text: 2.3-L methanotrophic biofilter

text: wastewater metagenome

text: MiSeq Illumina Sequencing

text: Methanotrophic biofilm grown with wastewater centrate under alternate CH4 feeding

text: wastewater/sludge


text: Sciences Faculty

text: public

text: The sample was retrieved from biofilter 3, which was a replicate of biofilter 2.

characteristic: description

text: Spain

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: organism

characteristic: project name

text: 2.3-L methanotrophic biofilter

characteristic: reactor type

text: wastewater metagenome

text: MiSeq Illumina Sequencing

characteristic: sequencing method

text: Methanotrophic biofilm grown with wastewater centrate under continuous-alternate CH4 feeding

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KAROLINSKA INSITUTET

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:KAROLINSKA INSITUTET

text: Neuroepithelial stem cell - derived neuronal/glial cells

characteristic: cell type

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Neuronal cells treated with 0 uM caffeine at 0h


text: KAROLINSKA INSITUTET

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: Neuronal cells treated with 0 uM caffeine at 1h


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Neuronal cells treated with 0 uM caffeine at 3h


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Neuronal cells treated with 0 uM caffeine at 9h


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Neuronal cells treated with 3 uM caffeine at 1h


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Neuronal cells treated with 3 uM caffeine at 3h


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Neuronal cells treated with 3 uM caffeine at 9h


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Neuronal cells treated with 10 uM caffeine at 1h


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Neuronal cells treated with 10 uM caffeine at 3h


text: KAROLINSKA INSITUTET

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Neuronal cells treated with 10 uM caffeine at 9h


text: King Fahd Medical Research Centre

text: public

tag: Namespace:King Fahd Medical Research Centre

text: Fermented Food

characteristic: description

text: food fermentation metagenome

text: food fermentation metagenome

text: yogurt 1


text: King Fahd Medical Research Centre

text: public

text: Fermented Food

text: food fermentation metagenome

text: food fermentation metagenome

text: yogurt 2


text: King Fahd Medical Research Centre

text: public

text: Fermented Food

text: food fermentation metagenome

text: food fermentation metagenome

text: yogurt 3


text: King Fahd Medical Research Centre

text: public

text: Fermented Food

text: food fermentation metagenome

text: food fermentation metagenome

text: Full fat laban 1


text: King Fahd Medical Research Centre

text: public

text: Fermented Food

text: food fermentation metagenome

text: food fermentation metagenome

text: Full fat laban 2


text: King Fahd Medical Research Centre

text: public

text: Fermented Food

text: food fermentation metagenome

text: food fermentation metagenome

text: Low fat laban


text: King Fahd Medical Research Centre

text: public

text: Fermented Food

text: food fermentation metagenome

text: food fermentation metagenome

text: Feta cheese