E-MTAB-5269:Sample 43

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 43

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 43


E-MTAB-5269:Sample 44

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRGS, Biogem

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5269:Sample 44

tag: Namespace:IRGS, Biogem

characteristic: Submitter Id

text: ArrayExpress

text: thyrocyte

characteristic: cell type

text: Norway rat

characteristic: common name

text: Protocols: PCCl3 were maintained in Coon’s modified F12 medium (EuroClone) supplemented with 5% newborn bovine serum (HyClone Laboratories) and six hormones 16. Cells were exposed for 7 days to CPF (6x10-7 M, 6x10-8 M, 6x10-9 M, Greyhound Chromatography F2057) and ETU (6x10-8 M, 6x10-9 M, 6x10-10 M, 2-Imidazolidinethione, Sigma-Aldrich I504) and their combinations. Total RNA was isolated from treated and control cells using Trizol reagent (Invitrogen) following manufacturer’s instructions. Total RNA samples were treated with DNasi (NEB), purified with RNasy Mini Kit (Qiagen) and controlled with Agilent 2100 bioanalyzer (Agilent Technologies). RNAs, 3 µg/each obtained from three biological replicates, were pooled to minimize sample-to-sample variations. 1μg of each RNA pool was used for library preparation with TruSeq Stranded total RNA Sample Prep Kit (Illumina Inc.) according to the manufacturer’s instructions.

characteristic: description

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: thyroid gland

characteristic: organism part

text: Rattus norvegicus

text: Sample 44

characteristic: title

type: has member


E-MTAB-5269:Sample 45

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 45

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 45


E-MTAB-5269:Sample 46

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 46

text: ArrayExpress

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 46


E-MTAB-5269:Sample 47

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 47

text: ArrayExpress

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 47


E-MTAB-5269:Sample 48

text: IRGS, Biogem

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5269:Sample 48

text: ArrayExpress

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 48


E-MTAB-5269:Sample 10

text: IRGS, Biogem

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5269:Sample 10

text: ArrayExpress

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 10


E-MTAB-5269:Sample 11

text: IRGS, Biogem

text: public

characteristic: SRA accession

text: E-MTAB-5269:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 11


E-MTAB-5269:Sample 12

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 12

text: ArrayExpress

text: thyrocyte

characteristic: cell type

text: Norway rat

characteristic: common name

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 12


E-MTAB-5269:Sample 13

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 13

text: ArrayExpress

text: thyrocyte

text: Norway rat

characteristic: description

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 13


E-MTAB-5269:Sample 14

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 14

text: ArrayExpress

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

characteristic: organism part

text: Rattus norvegicus

text: Sample 14

characteristic: title


E-MTAB-5269:Sample 15

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 15

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 15


E-MTAB-5269:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 16

text: ArrayExpress

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 16


E-MTAB-5269:Sample 17

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRGS, Biogem

text: public

text: E-MTAB-5269:Sample 17

text: ArrayExpress

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 17


E-MTAB-5269:Sample 18

text: IRGS, Biogem

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5269:Sample 18

text: ArrayExpress

text: thyrocyte

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: thyroid gland

text: Rattus norvegicus

text: Sample 18


text: Universite du Quebec a Montreal

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Universite du Quebec a Montreal

characteristic: collection date

text: lake bacterioplankton

text: taiga

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: aquatic metagenome

text: CoteNord

characteristic: project name

text: aquatic metagenome

text: Illumina Miseq

characteristic: sequencing method

text: lake bacterioplankton


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Universite du Quebec a Montreal

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: river bacterioplankton

characteristic: description

text: taiga

text: river

text: water

text: Canada

text: metagenome

text: aquatic metagenome

characteristic: organism

text: CoteNord

text: aquatic metagenome

text: Illumina Miseq

text: river bacterioplankton

characteristic: title


characteristic: External Id

text: Universite du Quebec a Montreal

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: soil bacteria

text: taiga

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

text: Canada

text: metagenome

text: soil metagenome

text: CoteNord

text: soil metagenome

text: Illumina Miseq

text: soil bacteria


text: UNIVERSITY OF LIVERPOOL

text: public

tag: Namespace:UNIVERSITY OF LIVERPOOL

text: Human

characteristic: common name

text: human-associated habitat

text: human gut

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: A

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: RS

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universite du Quebec a Montreal

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: soilwater bacteria

characteristic: description

text: taiga

text: soilwater

text: water

text: Canada

text: metagenome

characteristic: miscellaneous environmental package

text: soil metagenome

characteristic: organism

text: CoteNord

text: soil metagenome

text: Illumina Miseq

text: soilwater bacteria

characteristic: title


text: Universite du Quebec a Montreal

text: public

characteristic: INSDC status

characteristic: collection date

text: phyllosphere bacteria

text: taiga

characteristic: environment (biome)

text: phyllosphere

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: leaf metagenome

text: CoteNord

text: leaf metagenome

text: Illumina Miseq

text: phyllosphere bacteria


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Human

characteristic: common name

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

text: stool

characteristic: host body product

text: B

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: M

characteristic: special diet


text: Candiolo Cancer Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Candiolo Cancer Institute

characteristic: Submitter Id

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Patient

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: AIEC strain with identical pulsotype to non-AIEC strain ECG028, both belonging to D phylogroup and isolated from a Crohn's disease patient with ileal disease

characteristic: description

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli isolates


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Commensal non-AIEC strain with identical pulsotype to AIEC strain AIEC17, both belonging to D phylogroup and isolated from a Crohn's disease patient with ileal disease

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli isolates


text: public

text: AIEC strain with identical pulsotype to non-AIEC strain ECG011, both belonging to B2 phylogroup and isolated from a Crohn's disease patient with ileal disease

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli isolates


text: public

text: Commensal non-AIEC strain with identical pulsotype to AIEC strain AIEC01, both belonging to B2 phylogroup and isolated from a Crohn's disease patient with ileal disease

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli isolates


text: public

text: AIEC strain with identical pulsotype to non-AIEC strain ECG04, both belonging to B1 phylogroup and isolated from a healthy subject with rectorrhagia

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli isolates


text: public

text: Non-AIEC strain with identical pulsotype to AIEC strain AIEC07, both belonging to B1 phylogroup and isolated from a healthy subject with rectorrhagia

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli isolates


text: ROSWELL PARK CANCER INSTITUTE

text: public

tag: Namespace:ROSWELL PARK CANCER INSTITUTE

text: human

characteristic: common name

text: Control A549 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control A549 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control A549 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated A549 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated A549 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated A549 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control H460 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control H460 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control H460 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated H460 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated H460 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated H460 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control H1299 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control H1299 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Control H1299 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated H1299 cells of experiment 1

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated H1299 cells of experiment 2

text: Homo sapiens

text: Homo sapiens


text: ROSWELL PARK CANCER INSTITUTE

text: public

text: human

text: Irradiated H1299 cells of experiment 3

text: Homo sapiens

text: Homo sapiens


text: GIFS

text: public

characteristic: collection date

text: prarie

characteristic: environment (biome)

text: urban soils

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 108.4280° W

characteristic: geographic location (latitude)

text: 54.1317° N

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina Miseq

text: soil

characteristic: soil environmental package

text: Meadow Lake


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

characteristic: description

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

text: stool

characteristic: host body product

text: B

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: W

characteristic: special diet

characteristic: title


characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Human

characteristic: common name

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

text: B

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: RS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GIFS

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Tundra

text: rural

text: soil

text: Greenland

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 51.6941° W

text: 64.1814° N

text: metagenome

text: soil metagenome

characteristic: organism

text: Greenland Soils

text: soil metagenome

text: Illumina Miseq

text: soil

characteristic: soil environmental package

text: Greenland Soils


characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

text: stool

characteristic: host body product

text: B

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: C

characteristic: special diet

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MASSEY UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MASSEY UNIVERSITY

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain

text: DT160 sample 1


characteristic: External Id

text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 3


characteristic: ENA-CHECKLIST

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 4

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 5


text: MASSEY UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 6


text: MASSEY UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 7


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 8


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 9


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain

text: DT160 sample 10


characteristic: External Id

text: MASSEY UNIVERSITY

characteristic: INSDC center name

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 11


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 12


characteristic: ENA-CHECKLIST

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 13

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 14


text: MASSEY UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 15


text: MASSEY UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 16


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 17


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 18


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain

text: DT160 sample 19


characteristic: External Id

text: MASSEY UNIVERSITY

characteristic: INSDC center name

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 20


text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC first public

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: C

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: M

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain

text: DT160 sample 22

characteristic: title


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 23


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 24


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 25


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 26


text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 27


text: MASSEY UNIVERSITY

text: public

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 28


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: isolate

text: Poultry

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 29


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

text: DT160 sample 30


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain

text: DT160 sample 31

characteristic: title


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 32


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 33


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 34


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 35


text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 36


text: MASSEY UNIVERSITY

text: public

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 38


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 39


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

text: DT160 sample 40


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain

text: DT160 sample 41

characteristic: title


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 42


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 43


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 44


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 46


text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 48


text: MASSEY UNIVERSITY

text: public

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 50


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 51


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

text: DT160 sample 52


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain

text: DT160 sample 53

characteristic: title


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 54


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 57


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 58


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 59


text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 60


text: MASSEY UNIVERSITY

text: public

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 61


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: isolate

text: Poultry

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 62


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

text: DT160 sample 63


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain

text: DT160 sample 64

characteristic: title


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 65


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 66


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 68


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 69


text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 71


text: MASSEY UNIVERSITY

text: public

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 72


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 73


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

text: DT160 sample 74


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain

text: DT160 sample 75

characteristic: title


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 76


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 77


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 78


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 79


text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 80


text: MASSEY UNIVERSITY

text: public

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Poultry

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 81


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: isolate

text: Poultry

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 82


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

text: DT160 sample 83


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain

text: DT160 sample 84

characteristic: title


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 85


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 87


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 89


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: New Zealand

text: Avian

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 90


text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 91


text: MASSEY UNIVERSITY

text: public

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 92


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: isolate

text: Bovine

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 93


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

text: DT160 sample 94


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain

text: DT160 sample 95

characteristic: title


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 97


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 98


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 99


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 101


text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 103


text: MASSEY UNIVERSITY

text: public

characteristic: Submitter Id

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 104


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: isolate

text: Bovine

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 105


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

text: DT160 sample 106


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain

text: DT160 sample 108

characteristic: title


text: MASSEY UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 109


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 111


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: C

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: W

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: New Zealand

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Bovine

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain

text: DT160 sample 113

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 114


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 115


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 116


text: MASSEY UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 117


text: MASSEY UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 118


text: MASSEY UNIVERSITY

text: public

characteristic: collection date

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 119


text: MASSEY UNIVERSITY

text: public

text: New Zealand

characteristic: isolate

text: Bovine

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 120


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

text: DT160 sample 121


text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain

text: DT160 sample 122

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 123


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 124


text: MASSEY UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 125


text: MASSEY UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 127


text: MASSEY UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: New Zealand

text: Bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

text: DT160 sample 128


text: ROBERT KOCH-INSTITUTE

text: public

tag: Namespace:ROBERT KOCH-INSTITUTE

characteristic: collection date

text: Analysis of ESBL-producing Klebsiella pneumoniae

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: tracheal secretion

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 15

text: clinical isolate


text: ROBERT KOCH-INSTITUTE

text: public

text: Germany

text: not provided

text: Homo sapiens

characteristic: isolate

text: urine

characteristic: isolation source

text: Klebsiella pneumoniae subsp. pneumoniae

characteristic: organism

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 15

characteristic: serovar

text: clinical isolate

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH-INSTITUTE

text: public

text: Germany

text: not provided

text: Homo sapiens

text: rectal swab

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 405

text: clinical isolate

characteristic: title


text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Germany

text: not provided

text: Homo sapiens

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 405

text: clinical isolate


text: ROBERT KOCH-INSTITUTE

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

text: urine

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 405

text: clinical isolate


text: ROBERT KOCH-INSTITUTE

text: public

text: Germany

text: not provided

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: tracheal secretion

characteristic: isolation source

text: Klebsiella pneumoniae subsp. pneumoniae

characteristic: organism

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 2382

characteristic: serovar

text: clinical isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH-INSTITUTE

text: public

text: Germany

text: not provided

text: Homo sapiens

text: throat swab

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 29

text: clinical isolate

characteristic: strain


text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Germany

text: not provided

text: Homo sapiens

text: rectal swab

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 15

text: clinical isolate

characteristic: title


text: ROBERT KOCH-INSTITUTE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: rectal swab

text: Klebsiella quasipneumoniae subsp. similipneumoniae

text: multilocus sequence type (ST) 414

text: clinical isolate


text: ROBERT KOCH-INSTITUTE

text: public

text: Germany

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: tracheal secretion

characteristic: isolation source

text: Klebsiella pneumoniae subsp. pneumoniae

characteristic: organism

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 14

text: clinical isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH-INSTITUTE

text: public

text: Germany

text: not provided

text: Homo sapiens

text: urinary catheter

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 15

characteristic: serovar

text: clinical isolate


text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Germany

text: not provided

text: Homo sapiens

text: tracheal secretion

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 37

text: clinical isolate

characteristic: strain


text: ROBERT KOCH-INSTITUTE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Germany

text: not provided

text: Homo sapiens

text: nasal swab

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 15

text: clinical isolate

characteristic: title


text: ROBERT KOCH-INSTITUTE

text: public

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urine

characteristic: isolation source

text: multilocus sequence type (ST) 414

text: clinical isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH-INSTITUTE

text: public

text: Germany

text: not provided

text: Homo sapiens

text: urinary catheter

text: Klebsiella pneumoniae subsp. pneumoniae

characteristic: organism

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 48

text: clinical isolate


text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Germany

text: not provided

text: Homo sapiens

text: throat swab

text: Klebsiella pneumoniae subsp. pneumoniae

text: Klebsiella pneumoniae subsp. pneumoniae

text: multilocus sequence type (ST) 101

characteristic: serovar

text: clinical isolate


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: C

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: RS

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: stool

text: C

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: C

characteristic: title


unit: mg Chl/m3

characteristic: Chlorophyll Sensor

characteristic: Citation

characteristic: Event Date/Time End

text: GSC

text: public

characteristic: Latitude End

characteristic: Longitude End

unit: practical salinity unit

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

text: This cell was isolated using flow cytometry from a water sample (TARA_X000001437) collected during the Tara Oceans expedition (2009-2013) at station TARA_023 (latitudeN=42.1735 and longitudeE=17.7252), on date/time=2009-11-18T13:50, using a PUMP (High Volume Peristaltic Pump). The water sample material was collected in the marine biome (ENVO:00000447) from a deep chlorophyll maximum layer (ENVO:01000326) at a depth of 53-57 m. The water sample material was size-fractionated (5-20 micrometres) and prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods. The sampled cell has been identified by pyrosequencing methods and amplified using Multiple Displacement Amplification (MDA).

characteristic: description

text: marine biome (ENVO:00000447); Westerlies Biome (Longhurst 2007)

characteristic: environment (biome)

characteristic: environment (feature)

text: particulate matter (ENVO:xxxxxxxx), including plankton (ENVO:xxxxxxxx)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: event label

characteristic: further details

characteristic: latitude start

characteristic: longitude start

text: (MS) Mediterranean Sea [MRGID:1905]

characteristic: marine region

unit: µmol/L

characteristic: nitrate sensor

text: Stramenopiles sp. TOSAG23-1

unit: µmol/kg

characteristic: oxygen sensor

text: Tara Oceans expedition (2009-2013)

text: This cell was isolated using a MoFlo flow cytometer equipped with a 488 nm laser for excitation. This cell was considered as an heterotrophic protist based on the presence of SYBR Green I fluorescence and the absence of chlorophyll fluorescence. The cell was then lysed using cold KOH and its DNA was amplified using multiple displacement amplification (MDA). Flow-cytometric sorting and whole genome amplification were performed by the Bigelow Laboratory Single Cell Genomics Center.

characteristic: protocol description

characteristic: protocol label

text: high volume peristaltic pump [HVP-PUMP]

characteristic: sample collection device

text: ERS905354 (TARA_X000001437)

characteristic: sample derived from

text: This version can be used to provide data discovery services

characteristic: sample status

characteristic: sampling campaign

text: SV Tara

characteristic: sampling platform

characteristic: sampling station

text: Stramenopiles sp. TOSAG23-1

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

unit: ºC

characteristic: temperature

text: Single Amplified Genome TOSAG23-1_AIFI


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

text: This cell was isolated using flow cytometry from a water sample (TARA_G000000030) collected during the Tara Oceans expedition (2009-2013) at station TARA_041 (latitudeN=14.5536, longitudeE=70.0128) on date/time=2010-03-30T10:56, using a PUMP (High Volume Peristaltic Pump) with ECOTriplet. The water sample material (saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)) was collected at a depth of 58-62 m, targeting a deep chlorophyll maximum layer (ENVO:xxxxxxxx) in the marine biome (ENVO:00000447). The water sample material was NOT size-fractionated, preserved on board with 48% Glycine Betaine, and stored in liquid nitrogen for later detection and identification of single-cell amplified genomes (SAGs). The sampled cell has been identified by pyrosequencing methods and amplified using Multiple Displacement Amplification (MDA).

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: event label

text: tbd

characteristic: further details

characteristic: last update date

text: (search radius=5 degrees) Marine Province:West and South Indian Shelf (MRGID:21777)

text: Stramenopiles sp. TOSAG23-1

characteristic: organism

text: Tara Oceans expedition (2009-2013)

characteristic: project name

text: ERS489081 (TARA_G000000030)

text: SV Tara

text: Stramenopiles sp. TOSAG23-1

text: Single Amplified Genome TOSAG23-1_AIGI

characteristic: title


characteristic: Chlorophyll Sensor

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

text: deep chlorophyll maximum layer (ENVO:01000326)

text: water

characteristic: latitude start

characteristic: longitude start

text: (MS) Mediterranean Sea [MRGID:1905]

characteristic: marine region

characteristic: nitrate sensor

text: Stramenopiles sp. TOSAG23-1

characteristic: oxygen sensor

text: Tara Oceans expedition (2009-2013)

characteristic: protocol description

characteristic: protocol label

text: high volume peristaltic pump [HVP-PUMP]

characteristic: sample collection device

text: ERS905354 (TARA_X000001437)

characteristic: sample derived from

characteristic: sample status

characteristic: sampling campaign

text: SV Tara

characteristic: sampling platform

characteristic: sampling station

text: Stramenopiles sp. TOSAG23-1

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

characteristic: temperature

text: Single Amplified Genome TOSAG23-1_BCAI


characteristic: Chlorophyll Sensor

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: event label

characteristic: further details

text: (MS) Mediterranean Sea [MRGID:1905]

text: Stramenopiles sp. TOSAG23-2

characteristic: organism

text: Tara Oceans expedition (2009-2013)

characteristic: project name

text: high volume peristaltic pump [HVP-PUMP]

text: ERS905354 (TARA_X000001437)

text: SV Tara

text: Stramenopiles sp. TOSAG23-2

text: Single Amplified Genome TOSAG23-2_KB

characteristic: title


characteristic: Chlorophyll Sensor

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

text: water

characteristic: latitude start

characteristic: longitude start

text: (MS) Mediterranean Sea [MRGID:1905]

characteristic: marine region

characteristic: nitrate sensor

text: Stramenopiles sp. TOSAG23-1

characteristic: oxygen sensor

text: Tara Oceans expedition (2009-2013)

characteristic: protocol description

characteristic: protocol label

text: high volume peristaltic pump [HVP-PUMP]

characteristic: sample collection device

text: ERS905354 (TARA_X000001437)

characteristic: sample derived from

characteristic: sample status

characteristic: sampling campaign

text: SV Tara

characteristic: sampling platform

characteristic: sampling station

text: Stramenopiles sp. TOSAG23-1

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

characteristic: temperature

text: Single Amplified Genome TOSAG23-1_KC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ESE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Microbotryum superbum (A1)

characteristic: description

characteristic: mating type

text: Microbotryum superbum

characteristic: organism

text: Microbotryum superbum

text: Microbotryum superbum (A1)

characteristic: title


text: ESE

text: public

text: Microbotryum superbum (A2)

text: Microbotryum superbum

text: Microbotryum superbum

text: Microbotryum superbum (A2)


Clint

text: IBE(CSIC-UNIVERSITAT POMPEU FABRA)

text: public

text: Clint

text: chimpanzee

characteristic: common name

text: Pan troglodytes

text: Pan troglodytes

text: Clint Genomic DNA


text: CNRS

text: public

text: Gene of HydF from thermosipho melanesiensis codon optimized for expression in E.coli

text: Thermosipho melanesiensis

text: Thermosipho melanesiensis

text: HydF Thermosipho melanesiensis codon optimized gene


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: strain

text: Mouse


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHE

text: public

text: GBS_serotyping validation

text: Streptococcus agalactiae

text: Streptococcus agalactiae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: D

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: M

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

text: stool

text: D

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: W

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: D

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: C


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

text: stool

text: D

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: RS

characteristic: special diet


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: stool

text: E

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: M

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: E

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: W


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

text: stool

text: E

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: C

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: stool

text: E

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: RS

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: F

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: M


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

text: stool

text: F

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: W

characteristic: special diet


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: stool

text: F

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: RS

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: F

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: C


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

text: stool

text: G

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: M

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: stool

text: G

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: W

characteristic: title


characteristic: ENA-LAST-UPDATE

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text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

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characteristic: environment (biome)

text: human gut

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text: stool

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text: United Kingdom

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: G

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: RS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

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text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

text: stool

text: G

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: C

characteristic: special diet


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHE

text: public

text: GBS_serotyping validation

characteristic: description

text: Streptococcus agalactiae

characteristic: organism

text: Streptococcus agalactiae

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

text: human-associated habitat

characteristic: environment (biome)

text: human gut

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text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: H

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: M


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

text: stool

text: H

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: W

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: stool

text: H

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: RS

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: H

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: C


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

text: stool

text: I

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: M

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text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

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text: Mus musculus

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text: Mouse

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IRTA

text: public

text: pig

characteristic: common name

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n5 Spleen 31 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n5 SLN 31 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n7 spleen 38 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n7 SLN 38 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n8 spleen 38 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n8 SLN 38 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV non nfected pig n6 0 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV non infected pig n6 SLN 0 dpi


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: I

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: W

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRTA

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: pig

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: ASFV infected pig n1 Spleen 3 dpi

characteristic: title


text: IRTA

text: public

text: pig

characteristic: common name

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n2 Spleen 7 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n2 SLN 7 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n3 Spleen 3 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n3 SLN 3 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n4 Spleen 3 dpi


text: IRTA

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: ASFV infected pig n4 SLN 3 dpi


text: Escherichia coli

characteristic: ArrayExpress-Species

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF LIVERPOOL

text: public

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text: Human

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text: human-associated habitat

characteristic: environment (biome)

text: human gut

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text: stool

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text: United Kingdom

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text: stool

characteristic: host body product

text: I

characteristic: host subject id

text: human-gut

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text: mimarks-survey

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text: Homo sapiens

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text: Homo sapiens

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text: C


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text: UNIVERSITY OF LIVERPOOL

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text: public

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text: Human

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text: United Kingdom

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text: I

text: human-gut

text: mimarks-survey

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text: Effect of diet on human gut microbiota

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text: Illumina MiSeq paired-end 250bp

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text: RS

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text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

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text: human-associated habitat

characteristic: environment (biome)

text: human gut

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text: stool

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text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: J

characteristic: host subject id

text: human-gut

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: M

characteristic: title


text: Staphylococcus aureus

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text: SC

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text: public

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text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF CAMBRIDGE

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tag: Namespace:UNIVERSITY OF CAMBRIDGE

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text: Boreal

characteristic: environment (biome)

text: lake

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text: sediment

characteristic: environment (material)

text: Canada

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characteristic: geographic location (elevation)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: Sudbury lake mesocosms

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text: metagenome

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text: Illumina NextSeq

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text: Sudbury lake mesocosms


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

text: public

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text: human-associated habitat

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text: United Kingdom

characteristic: geographic location (country and/or sea)

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text: stool

characteristic: host body product

text: J

characteristic: host subject id

text: human-gut

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text: mimarks-survey

text: Homo sapiens

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text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: W

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text: UNIVERSITY OF BRITISH COLUMBIA

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text: public

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tag: Namespace:UNIVERSITY OF BRITISH COLUMBIA

characteristic: Submitter Id

text: Dfc, Boreal cool summer

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text: forest

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text: forest

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text: soil

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text: soil

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text: Canada

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text: harvested (OM3)

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text: O horizon

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text: metagenome

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text: ATCACG

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text: soil metagenome

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text: Skulow Lake genomic survey of soil microbial taxonomy and metabolic potential

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unit: g

characteristic: sample weight for DNA extraction

text: soil metagenome

text: Illumina

text: soil

characteristic: soil environmental package

text: LFH

characteristic: soil horizon

text: Orthic Gray Luvisols

text: Lodgepole pine


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

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text: public

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text: Dfc, Boreal cool summer

text: forest

text: forest

text: soil

text: soil

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: harvested (OM3)

text: E horizon

text: metagenome

text: CGATGT

text: soil metagenome

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

text: Ae

text: Orthic Gray Luvisols

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text: Lodgepole pine


text: UNIVERSITY OF BRITISH COLUMBIA

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text: Dfc, Boreal cool summer

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text: forest

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text: forest

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text: soil

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text: soil

characteristic: environmental package

text: Canada

characteristic: geographic location (depth)

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text: harvested (OM3)

characteristic: harvesting treatment

text: A horizon

characteristic: horizon

text: metagenome

characteristic: investigation type

text: TTAGGC

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text: soil metagenome

characteristic: organism

characteristic: project name

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text: soil metagenome

text: Illumina

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characteristic: soil environmental package

text: AB

text: Orthic Gray Luvisols

text: Lodgepole pine


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

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text: public

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text: Dfc, Boreal cool summer

text: forest

text: forest

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text: soil

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

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text: harvested (OM3)

text: B horizon

text: metagenome

text: TGACCA

text: soil metagenome

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

text: Bt

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text: Orthic Gray Luvisols

text: Lodgepole pine


text: UNIVERSITY OF BRITISH COLUMBIA

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text: Dfc, Boreal cool summer

characteristic: collection date

text: forest

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text: forest

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text: soil

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text: soil

characteristic: environmental package

text: Canada

characteristic: geographic location (depth)

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text: harvested (OM3)

characteristic: harvesting treatment

text: O horizon

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text: metagenome

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text: ACAGTG

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text: soil metagenome

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text: soil metagenome

text: Illumina

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text: LFH

text: Orthic Gray Luvisols

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text: Lodgepole pine


characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF BRITISH COLUMBIA

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

text: Dfc, Boreal cool summer

text: forest

text: forest

text: soil

text: soil

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: harvested (OM3)

text: E horizon

text: metagenome

text: GCCAAT

text: soil metagenome

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Ae

text: Orthic Gray Luvisols

text: Lodgepole pine


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

text: stool

characteristic: host body product

text: J

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: C

characteristic: special diet