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text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: susceptible

value: meropenem

value: e-test


text: academisch medisch centrum

text: public

text: VNM

characteristic: SRA accession

characteristic: Submitter Id

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: broth dilution

value: trimethoprim-sulfamethoxazole

value: resistant

value: ampicillin

value: ceftazidime


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

characteristic: genus

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: mg/L

value: Vitek

value: Escherichia coli

value: colistin

value: amoxicillin-clavulanic acid


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

characteristic: host

text: not provided

characteristic: host health state

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: trimethoprim

value: imipenem

value: cefoxitin

value: ciprofloxacin

value: piperacillin-tazobactam


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Vietnam ESBL E. coli sample

characteristic: title

value: gentamicin

value: EUCAST

value: susceptible

value: cefotaxime


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

characteristic: isolate

text: Feces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: broth dilution

value: e-test

value: resistant

value: trimethoprim-sulfamethoxazole

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: mg/L

value: Vitek

value: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: ampicillin

value: ceftazidime

value: trimethoprim

value: colistin


text: academisch medisch centrum

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: amoxicillin-clavulanic acid

value: piperacillin-tazobactam

value: imipenem

value: ciprofloxacin


text: academisch medisch centrum

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: EUCAST

value: susceptible

value: cefoxitin

value: cefotaxime


text: academisch medisch centrum

text: public

text: VNM

characteristic: SRA accession

characteristic: Submitter Id

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: broth dilution

value: resistant

value: trimethoprim-sulfamethoxazole

value: gentamicin

value: e-test


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

characteristic: genus

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: ampicillin

value: mg/L

value: Vitek

value: Escherichia coli

value: meropenem


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

characteristic: host

text: not provided

characteristic: host health state

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: amoxicillin-clavulanic acid

value: ceftazidime

value: colistin

value: trimethoprim


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Vietnam ESBL E. coli sample

characteristic: title

value: EUCAST

value: susceptible

value: ciprofloxacin

value: piperacillin-tazobactam

value: imipenem


text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

characteristic: isolate

text: Feces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: resistant

value: broth dilution

value: trimethoprim-sulfamethoxazole

value: cefotaxime

value: cefoxitin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Chicken

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: mg/L

value: Vitek

value: e-test

value: ampicillin

value: gentamicin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: academisch medisch centrum

text: public

text: VNM

text: Escherichia

text: Viet Nam

text: Human

text: not provided

text: Feces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Vietnam ESBL E. coli sample

value: meropenem

value: Escherichia coli

value: colistin

value: ceftazidime

value: amoxicillin-clavulanic acid


2003wt forward sequences

text: UNIVERSITY OF OSLO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2003wt forward sequences

tag: Namespace:UNIVERSITY OF OSLO

text: An assembly of the Lactobacillus planetarium NCFB 965 genome based on paired MiSeq sequences assembled using the A5 pipeline

characteristic: description

text: Lactobacillus plantarum

text: Lactobacillus plantarum

text: Lactobacillus plantarum NCFB 965 genome assembly


2003wt reverse sequences

text: UNIVERSITY OF OSLO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2003wt reverse sequences

text: Lactobacillus plantarum

text: Lactobacillus plantarum


2003wt genome assembly

text: UNIVERSITY OF OSLO

text: public

text: 2003wt genome assembly

characteristic: Submitter Id

text: Lactobacillus plantarum

text: Lactobacillus plantarum


text: public

tag: Namespace:EMBL - EBI & Wellcome Trust Sanger Institute

text: ArrayExpress

characteristic: broker name

text: fibroblast derived cell line

characteristic: cell line

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Following stimulation, sample were crosslinked in 1% HCHO (prepared in 1X DPBS) at room temperature for 10 minutes, and HCHO was quenched by the addition of glycine at a final concentration of 0.125M. Cells were pelleted at 4°C at 2000 x g, washed with ice-cold 1X DPBS twice, and snapped frozen in liquid nitrogen. The cell pellets were stored in -80°C until further stages were performed. Human dermal fibroblasts were obtained from the HipSci consortium (http://www.hipsci.org/ (Streeter et al., 2017) (where they were used for creating iPSCs). These original cells were thawed to test for growth and viability and refrozen after 1-2 passages, so that all lines were in the same growth rate and proliferation conditions before the stimulation experiment. Non-human primate cells were extracted from skin tissues that were incubated for 2hrs with 0.5% collagense-A (Roche; 11088815001) after mechanical processing, and then filtered through 100µm strainers before being plated and passaged prior to cryo-banking. Rodent cells were obtained from Cellbiologics where they were extracted using a similar enzymatic extraction protocol using skin tissues from the same regions of the body used in primates. Cell were grown in ATCC fibroblast growth medium (Fibroblast Basal Medium (ATCC, ATCC-PCS-201-030) with Fibroblast Growth Kit-Low serum (ATCC, PCS-201-041) Cells were stimulated with 1ug/mL High-Molecular Weight poly I:C (Invivogen, Cat. Code: tlrl-pic) transfected with 2uL/mL Lipofectamin 2,000 (ThermoFisher, Cat Number 11668027), for 4 hours. ChIPmentation was performed according to version 1.0 of the published protocol (Schmidl et al., 2015) with some modifications at the ChIP stage: Cell pellets were lysed in 300 ul ChIP Lysis Buffer I (50mM HEPES.KOH, pH 7.5, 140mM NaCl, 1mM EDTA, pH 8.0, 10% Glycerol, 0.25% NP-40, 0.5% Triton X-100) on ice for 10 minutes. Cells were then pelleted at 4°C at 2000 x g for 5 minutes, and washed by 300ul ChIP Lysis Buffer II (10 mM Tris.Cl, pH 8.0, 200 mM NaCl, 1mM EDTA, pH 8.0, 0.5mM EGTA, pH 8.0), and pelleted again at 4°C at 2000 x g for 5 minutes. Nuclei were resuspended in 300 ul ChIP Lysis Buffer III (10mM Tris.Cl, pH 8.0, 100mM NaCl, 1mM EDTA, 0.5mM EGTA, 0.1% Sodium Deoxycholate, 0.5% N-Lauryolsarcosine). Chromatin was sonicated using Bioruptor Pico (Diagenode) with 10 cycles of 30 seconds ON/30 seconds OFF. 30ul 10% Triton X-100 were added into each sonicated chromatin, and insoluble chromatin was pelleted at 16,100 x g at 4°C for 10 minutes. 1ul supernatant was taken as an input control. The rest of the supernatant was incubated with 10ul Protein A Dynabeads (Invitrogen) pre-bound with 1ug anti-H3K4me3 (Diagenode Cat Number C15410003) or 1ug anti-H3K27ac (Diagenode, Cat Number C15410196) in a rotating platform in a cold room overnight. Each immunoprecipitation (IP) was washed with 500ul RIPA Buffer (50mM HEPES.KOH, pH 7.5, 500mM LiCl, 1mM EDTA, 1% NP-40, 0.7% Sodium Deoxycholate, check components) for 3 times. Each IP was then washed with 500ul 10mM Tris, pH 8.0 twice, and resuspended in 30ul tagmentation reaction mix (10mM Tris.Cl, pH 8.0, 5mM Mg2Cl, 1ul Tn5 transposase (Nextera)). The tagmentation reaction was put on a thermomixer at 37°C for 10 minutes at 800 rpm shaking. Following tagmentation, each IP was washed sequentially with 500ul RIPA Buffer twice, and 1X TE NaCl (10mM Tris.Cl, pH 8.0, 1mM EDTA, pH 8.0, 50mM NaCl) once. Elution and reverse-crosslinking were done by resuspending the beads with 100ul ChIP Elution Buffer (50mM Tris.Cl, pH 8.0, 10mM EDTA, pH 8.0, 1% SDS) on a thermomixer at 65°C overnight, 1,400 rpm. DNA was purified by MinElute PCR Purification Kit (QIAGEN, Cat Number 28004) and eluted in 12.5ul Buffer EB (QIAGEN, Cat Number 28004), which yielded ~10ul ChIPed DNA. The library preparation reactions contained the following reagents: 10ul purified DNA (from the above procedure), 2.5ul PCR Primer Cocktails (Nextera kit, Illumina, Cat Number FC-121-1030), 2.5ul N5xx (Nextera index kit, Illumina Cat Number FC-121-1012), 2.5ul N7xx (Nextera index kit , Illumina, Cat Number FC-121-1012), 7.5ul NPM PCR Master Mix (Nextera kit, Illumina, Cat Number FC-121-1030) The PCR cycles were as follows: 72°C, 5 mins; 98°C, 2 mins; 98°C, 10 secs, 63°C, 30 secs, 72°C, 20 secs] X 12; 10°C hold. The amplified libraries were purified by double AmpureXP beads purification: first with 0.5X bead ratio, keep supernatant, second with 1.4X bead ratio, keep bound DNA. Elution was done in 20ul Buffer EB (QIAGEN).

text: normal

characteristic: disease

characteristic: individual

text: Mus musculus

text: Mus musculus

text: dermis

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL - EBI & Wellcome Trust Sanger Institute

text: public

text: ArrayExpress

text: fibroblast derived cell line

text: fibroblast

text: house mouse

text: normal

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

text: Mus musculus

text: female

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: fibroblast derived cell line

text: fibroblast

text: Rhesus monkey

characteristic: description

text: normal

text: Macaca mulatta

text: Macaca mulatta

text: dermis

text: Macaca mulatta

text: female


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: fibroblast

characteristic: cell type

text: human

characteristic: common name

text: normal

characteristic: disease

text: joxm

text: Homo sapiens

text: Homo sapiens

text: dermis

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: fibroblast

text: human

text: normal

text: pelm

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dermis

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: fibroblast

text: human

text: normal

text: sojd

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dermis

text: Homo sapiens

text: female

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: fibroblast derived cell line

text: fibroblast

text: Norway rat

characteristic: description

text: normal

text: Rattus norvegicus

text: Rattus norvegicus

text: dermis

text: Rattus norvegicus

text: female

text: BN

characteristic: strain


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fibroblast derived cell line

characteristic: cell line

text: fibroblast

characteristic: cell type

text: Norway rat

characteristic: common name

text: Protocols: Cells were washed with PBS and then lysed in RLT plus buffer (Qiagen) Human dermal fibroblasts were obtained from the HipSci consortium (http://www.hipsci.org/ (Streeter et al., 2017) (where they were used for creating iPSCs). These original cells were thawed to test for growth and viability and refrozen after 1-2 passages, so that all lines were in the same growth rate and proliferation conditions before the stimulation experiment. Non-human primate cells were extracted from skin tissues that were incubated for 2hrs with 0.5% collagense-A (Roche; 11088815001) after mechanical processing, and then filtered through 100µm strainers before being plated and passaged prior to cryo-banking. Rodent cells were obtained from Cellbiologics where they were extracted using a similar enzymatic extraction protocol using skin tissues from the same regions of the body used in primates. Cell were grown in ATCC fibroblast growth medium (Fibroblast Basal Medium (ATCC, ATCC-PCS-201-030) with Fibroblast Growth Kit-Low serum (ATCC, PCS-201-041) Cells were stimulated with either: (1) 1ug/mL High-Molecular Weight poly I:C (Invivogen, Cat. Code: tlrl-pic) transfected with 2uL/mL Lipofectamin 2,000 (ThermoFisher, Cat Number 11668027); (2) mock transfected with Lipofectamin 2,000; (3) stimulated with 1,000 IU of IFNB (human IFNB - 11410-2 (for human and macaque cells); rat IFNB - 13400-1; mouse IFNB - 12401-1; all IFNs were obtained from PBL, and had activity units based on similar virological assays); or (4) left untreated. Additional samples in human and mouse were stimulated with 1,000 IU of Cross-mammalian IFN (Universal Type I IFN Alpha, PBL, Cat Number 11200-1). Total RNA was extracted using the RNeasy Plus Mini kit(Qiagen, Cat Number 74136), using QIAcube (Qiagen). Libraries were produced using the Kapa Stranded mRNA-seq Kit (Kapa Biosystems, Kit code: KK8421). The Kapa library construction protocol was modified for automated library preparation by Bravo (Agilent Technologies). cDNA was amplified in 13 PCR cycles, and purified by Ampure XP beads (Beckman Coulter, Cat Number A63882) (1.8x volume) using Zephyr (Perkin Elmer). Prior to sequencing, libraries were quantified using MiSeq (25bp PE). This data was used for pooling libraries in equimolar amounts by Coulter NX (Span-8, Beckman).

text: normal

characteristic: disease

text: Rattus norvegicus

text: Rattus norvegicus

text: dermis

text: Rattus norvegicus

text: female

text: BN


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: fibroblast

text: human

text: normal

text: cups

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dermis

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: fibroblast

text: human

text: normal

text: oapg

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dermis

text: Homo sapiens

text: female

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: human

characteristic: description

text: normal

text: joxm

text: Homo sapiens

text: Homo sapiens

text: dermis

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: cell line

text: fibroblast

characteristic: cell type

text: human

characteristic: common name

text: normal

characteristic: disease

text: sojd

text: Homo sapiens

text: Homo sapiens

text: dermis

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: fibroblast

text: human

text: normal

text: pelm

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: dermis

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: fibroblast

text: human

text: normal

text: hoik

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: dermis

text: Homo sapiens

text: female


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fibroblast derived cell line

text: fibroblast

text: house mouse

text: normal

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: female

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: fibroblast derived cell line

characteristic: cell line

text: fibroblast

characteristic: cell type

text: Rhesus monkey

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Macaca mulatta

text: Macaca mulatta

text: dermis

text: Macaca mulatta

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LEICESTER

text: public

tag: Namespace:UNIVERSITY OF LEICESTER

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Nottingham

characteristic: isolation source

text: Neisseria meningitidis

text: Neisseria meningitidis

text: Neisseria meningitidis

text: Nottingham Carriage Isolate

type: has member


text: UNIVERSITY OF LEICESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: healthy

text: Homo sapiens

text: Nottingham

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

text: B

characteristic: serovar

text: Neisseria meningitidis

characteristic: strain

text: Nottingham Carriage Isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LEICESTER

text: public

text: United Kingdom

text: healthy

text: Homo sapiens

text: Nottingham

text: Neisseria meningitidis

text: Neisseria meningitidis

text: Y

text: Neisseria meningitidis

text: Nottingham Carriage Isolate

characteristic: title


characteristic: External Id

text: KTH

text: public

characteristic: collection date

text: Baltic Sea

characteristic: geographic location (country and/or sea)

text: 56°55'.51.24N 17°3'38.52E

characteristic: lat lon

text: SAR86 cluster bacterium BS0038H10

text: SAR86 cluster bacterium BS0038H10

text: Single-amplified genome BS0038H10 from the LMO station in the Baltic Sea


text: KTH

characteristic: INSDC center name

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Cryomorphaceae bacterium A11

text: Cryomorphaceae bacterium A11

text: Single-amplified genome A11 from the LMO station in the Baltic Sea


text: KTH

characteristic: INSDC first public

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Rhodobacter sp. BS0038D5

text: Rhodobacter sp. BS0038D5

text: Single-amplified genome BS0038D5 from the LMO station in the Baltic Sea


text: KTH

characteristic: INSDC last update

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: SAR92 cluster bacterium BS0038E9

text: SAR92 cluster bacterium BS0038E9

text: Single-amplified genome BS0038E9 from the LMO station in the Baltic Sea


text: KTH

text: public

characteristic: INSDC status

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Flavobacteriaceae bacterium BS0038D11

text: Flavobacteriaceae bacterium BS0038D11

text: Single-amplified genome BS0038D11 from the LMO station in the Baltic Sea


text: KTH

text: public

characteristic: SRA accession

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Flavobacteriaceae bacterium BS0038D2

text: Flavobacteriaceae bacterium BS0038D2

text: Single-amplified genome BS0038D2 from the LMO station in the Baltic Sea


text: KTH

text: public

characteristic: Submitter Id

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Polaribacter sp. BS0038A11

text: Polaribacter sp. BS0038A11

text: Single-amplified genome BS0038A11 from the LMO station in the Baltic Sea


text: KTH

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Rhodobacterales bacterium BS0028A2

characteristic: organism

text: Rhodobacterales bacterium BS0028A2

text: Single-amplified genome BS0038A2 from the LMO station in the Baltic Sea


text: KTH

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Flavobacteriia bacterium BS0038A8

text: Flavobacteriia bacterium BS0038A8

text: Single-amplified genome BS0038A8 from the LMO station in the Baltic Sea


text: KTH

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Rhodobacteraceae bacterium BS0028B3

text: Rhodobacteraceae bacterium BS0028B3

text: Single-amplified genome BS0038B3 from the LMO station in the Baltic Sea


text: KTH

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Flavobacterium sp. BS0038B8

text: Flavobacterium sp. BS0038B8

text: Single-amplified genome BS0038B8 from the LMO station in the Baltic Sea


text: KTH

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Acidimicrobiaceae bacterium BS0038C4

text: Acidimicrobiaceae bacterium BS0038C4

text: Single-amplified genome BS0038C4 from the LMO station in the Baltic Sea


text: KTH

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Sphingobacteriales bacterium BS0038D9

text: Sphingobacteriales bacterium BS0038D9

text: Single-amplified genome BS0038D9 from the LMO station in the Baltic Sea


text: KTH

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Lentimonas sp. BS0038F3

text: Lentimonas sp. BS0038F3

text: Single-amplified genome BS0038F3 from the LMO station in the Baltic Sea


text: KTH

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Synechococcus sp. BS0038G8

text: Synechococcus sp. BS0038G8

text: Single-amplified genome BS0038G8 from the LMO station in the Baltic Sea


text: KTH

text: public

text: Baltic Sea

text: 56°55'.51.24N 17°3'38.52E

text: Candidatus Captivus sp. BS0038H5

text: Candidatus Captivus sp. BS0038H5

text: Single-amplified genome BS0038H5 from the LMO station in the Baltic Sea


PPPOOLF

text: DISAAUNIMI

text: public

text: PPPOOLF

text: insect

characteristic: environment (biome)

text: insect

characteristic: environment (feature)

text: insect

characteristic: environment (material)

text: Italy

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: female

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenomes

text: Fungal community associated with Phlebotomus perniciosus

characteristic: project name

text: metagenomes

text: illumina

characteristic: sequencing method


PPPOOLM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DISAAUNIMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: PPPOOLM

characteristic: collection date

text: insect

text: insect

text: insect

text: Italy

characteristic: geographic location (country and/or sea)

text: male

text: host-associated

text: metagenome

text: metagenomes

text: metagenomes

text: illumina

characteristic: title


E-MTAB-5778:Sample 4

text: Institute of Molecular Physiology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5778:Sample 4

tag: Namespace:Institute of Molecular Physiology

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: collection of plant material taken from the greenhouse. Seeds were taken from plants collected in the natural Habitat. Samples were grown from seeds in potting soil (custom mixed soil from the Botanical Garden, University of Mainz) in a glasshouse with an additional light intensity of ca. 300 µmol m-2 s-1. RNeasy Plant Mini kit was used including DNase digestion with RNase-Free DNase Set TruSeq RNA Sample Preparation Kit following the Low Sample Protocol

characteristic: description

text: adult

characteristic: developmental stage

text: Hammada scoparia

characteristic: organism

text: Hammada scoparia

text: leaf

characteristic: organism part

text: Hammada scoparia

text: Sample 4


E-MTAB-5778:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 5

text: ArrayExpress

text: adult

text: Hammada scoparia

text: Hammada scoparia

text: leaf

text: Hammada scoparia

text: Sample 5


E-MTAB-5778:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 6

text: ArrayExpress

text: adult

text: Hammada scoparia

text: Hammada scoparia

text: leaf

text: Hammada scoparia

text: Sample 6


E-MTAB-5778:Sample 13

text: Institute of Molecular Physiology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5778:Sample 13

text: ArrayExpress

text: cotyledon emergence stage

text: Salsola divaricata

text: Salsola divaricata

text: cotyledon

text: Salsola divaricata

text: Sample 13


E-MTAB-5778:Sample 14

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 14

text: ArrayExpress

text: cotyledon emergence stage

text: Salsola divaricata

text: Salsola divaricata

text: cotyledon

text: Salsola divaricata

text: Sample 14


E-MTAB-5778:Sample 15

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 15

text: ArrayExpress

text: cotyledon emergence stage

text: Salsola divaricata

text: Salsola divaricata

text: cotyledon

text: Salsola divaricata

text: Sample 15


E-MTAB-5778:Sample 16

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 16

text: ArrayExpress

text: LP.01 one leaf visible stage

text: Salsola divaricata

text: Salsola divaricata

text: leaf

text: Salsola divaricata

text: Sample 16


E-MTAB-5778:Sample 17

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 17

text: ArrayExpress

text: LP.01 one leaf visible stage

text: Salsola divaricata

text: Salsola divaricata

text: leaf

text: Salsola divaricata

text: Sample 17


E-MTAB-5778:Sample 18

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 18

text: ArrayExpress

text: LP.01 one leaf visible stage

text: Salsola divaricata

text: Salsola divaricata

text: leaf

text: Salsola divaricata

text: Sample 18


E-MTAB-5778:Sample 19

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 19

text: ArrayExpress

text: cotyledon emergence stage

text: Salsola divaricata

text: Salsola divaricata

text: cotyledon

text: Salsola divaricata

text: Sample 19


E-MTAB-5778:Sample 20

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 20

text: ArrayExpress

text: cotyledon emergence stage

text: Salsola divaricata

text: Salsola divaricata

text: cotyledon

text: Salsola divaricata

text: Sample 20


E-MTAB-5778:Sample 21

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 21

text: ArrayExpress

text: cotyledon emergence stage

text: Salsola divaricata

text: Salsola divaricata

text: cotyledon

text: Salsola divaricata

text: Sample 21


E-MTAB-5778:Sample 22

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 22

text: ArrayExpress

text: LP.01 one leaf visible stage

text: Salsola divaricata

text: Salsola divaricata

text: leaf

text: Salsola divaricata

text: Sample 22


E-MTAB-5778:Sample 23

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 23

text: ArrayExpress

text: LP.01 one leaf visible stage

text: Salsola divaricata

text: Salsola divaricata

text: leaf

text: Salsola divaricata

text: Sample 23


E-MTAB-5778:Sample 24

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 24

text: ArrayExpress

text: LP.01 one leaf visible stage

text: Salsola divaricata

text: Salsola divaricata

text: leaf

text: Salsola divaricata

text: Sample 24


E-MTAB-5778:Sample 10

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 10

text: ArrayExpress

text: LP.01 one leaf visible stage

text: Salsola oppositifolia

text: Salsola oppositifolia

text: leaf

text: Salsola oppositifolia

text: Sample 10


E-MTAB-5778:Sample 11

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 11

text: ArrayExpress

text: LP.01 one leaf visible stage

text: Salsola oppositifolia

text: Salsola oppositifolia

text: leaf

text: Salsola oppositifolia

text: Sample 11


E-MTAB-5778:Sample 12

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 12

text: ArrayExpress

text: LP.01 one leaf visible stage

text: Salsola oppositifolia

text: Salsola oppositifolia

text: leaf

text: Salsola oppositifolia

text: Sample 12


E-MTAB-5778:Sample 7

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 7

text: ArrayExpress

text: cotyledon emergence stage

text: Salsola oppositifolia

text: Salsola oppositifolia

text: cotyledon

text: Salsola oppositifolia

text: Sample 7


E-MTAB-5778:Sample 8

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 8

text: ArrayExpress

text: cotyledon emergence stage

text: Salsola oppositifolia

text: Salsola oppositifolia

text: cotyledon

text: Salsola oppositifolia

text: Sample 8


E-MTAB-5778:Sample 9

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 9

text: ArrayExpress

text: cotyledon emergence stage

text: Salsola oppositifolia

text: Salsola oppositifolia

text: cotyledon

text: Salsola oppositifolia

text: Sample 9


E-MTAB-5778:Sample 1

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 1

text: ArrayExpress

text: adult

text: Salsola webbii

text: Salsola webbii

text: leaf

text: Salsola webbii

text: Sample 1


E-MTAB-5778:Sample 2

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 2

text: ArrayExpress

text: adult

text: Salsola webbii

text: Salsola webbii

text: leaf

text: Salsola webbii

text: Sample 2


E-MTAB-5778:Sample 3

text: Institute of Molecular Physiology

text: public

text: E-MTAB-5778:Sample 3

text: ArrayExpress

text: adult

text: Salsola webbii

text: Salsola webbii

text: leaf

text: Salsola webbii

text: Sample 3


text: EMBL - EBI & Wellcome Trust Sanger Institute

text: public

text: ArrayExpress

text: fibroblast derived cell line

characteristic: cell line

text: fibroblast

characteristic: cell type

text: Norway rat

characteristic: common name

text: Protocols: Cells were sorted with either Becton Dickinson INFLUX into wells containing 2uL of Lysis Buffer (1:20 solution of RNase Inhibitor (Clontech, Cat Number 2313A) in 0.2% v/v Triton X-100 (Sigma-Aldrich, Cat Number T9284), spun down and immediately frozen at -80°. Human dermal fibroblasts were obtained from the HipSci consortium (http://www.hipsci.org/ (Streeter et al., 2017) (where they were used for creating iPSCs). These original cells were thawed to test for growth and viability and refrozen after 1-2 passages, so that all lines were in the same growth rate and proliferation conditions before the stimulation experiment. Non-human primate cells were extracted from skin tissues that were incubated for 2hrs with 0.5% collagense-A (Roche; 11088815001) after mechanical processing, and then filtered through 100µm strainers before being plated and passaged prior to cryo-banking. Rodent cells were obtained from Cellbiologics where they were extracted using a similar enzymatic extraction protocol using skin tissues from the same regions of the body used in primates. Cell were grown in ATCC fibroblast growth medium (Fibroblast Basal Medium (ATCC, ATCC-PCS-201-030) with Fibroblast Growth Kit-Low serum (ATCC, PCS-201-041) Cells were stimulated with 1ug/mL of rhodamine-labelled poly I:C (InvivoGen, tlrl-picr), transfected with 2uL/mL Lipofectamin 2,000 , for 0,2,4,8 hours. Sorted plates were processed according to the Smart-seq2 protocol (Picelli et al., 2014): Oligo-dT primer (IDT), dNTPs (ThermoFisher, Cat Number 10319879) and ERCC RNA Spike-In Mix (1:25,000,000 final dilution, Ambion, Cat Number 4456740) were added to each well, and Reverse Transcription (using 50U SmartScribe, Clontech Cat Number 639538) and PCR were performed following the original protocol with 25 PCR cycles. cDNA libraries were prepared using Nextera XT DNA Sample Preparation Kit (Illumina, Cat Number FC-131-1096), according to the protocol supplied by Fluidigm (PN 100-5950 B1). Quality Checks on cDNA were done using a Bioanalyser 2100 (Agilent Technologies). Libraries from 96 single cells were quantified using the LightCycler 480 (Roche), pooled and purified using AMPure XP beads (Beckman Coulter) with Hamilton 384 head robot (Hamilton Robotics). Pooled samples were sequenced on an Illumina HiSeq 2500 instrument, using paired-end 125-bp reads.

text: normal

characteristic: disease

text: Rattus norvegicus

text: Rattus norvegicus

text: dermis

text: Rattus norvegicus

text: female

characteristic: sex

text: BN

characteristic: strain


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: dermis

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: fibroblast derived cell line

text: fibroblast

text: house mouse

characteristic: description

text: normal

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

characteristic: organism part

text: Mus musculus

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: fibroblast derived cell line

characteristic: cell line

text: fibroblast

text: Rhesus monkey

text: normal

text: Macaca mulatta

text: Macaca mulatta

text: dermis

text: Macaca mulatta

text: female


ERS1816589 (SAMEA104157571)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816589 (SAMEA104157571)

tag: Namespace:BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: human

characteristic: common name

text: hTERT-L2/HCT116 mixture sample 1

text: Homo sapiens

text: Homo sapiens


ERS1816590 (SAMEA104157572)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

characteristic: INSDC last update

text: public

text: ERS1816590 (SAMEA104157572)

text: human

text: hTERT-L2/HCT116 mixture sample 2

text: Homo sapiens

text: Homo sapiens


ERS1816591 (SAMEA104157573)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

characteristic: INSDC status

text: ERS1816591 (SAMEA104157573)

text: human

text: hTERT-L2/HCT116 mixture sample 3

text: Homo sapiens

text: Homo sapiens


ERS1816592 (SAMEA104157574)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

characteristic: SRA accession

text: ERS1816592 (SAMEA104157574)

text: human

text: hTERT-L2/HCT116 mixture sample 4

text: Homo sapiens

text: Homo sapiens


ERS1816593 (SAMEA104157575)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816593 (SAMEA104157575)

characteristic: Submitter Id

text: human

text: hTERT-L2/HCT116 mixture sample 5

text: Homo sapiens

text: Homo sapiens


ERS1816594 (SAMEA104157576)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816594 (SAMEA104157576)

text: human

text: hTERT-L2/HCT116 mixture sample 6

text: Homo sapiens

text: Homo sapiens


ERS1816595 (SAMEA104157577)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816595 (SAMEA104157577)

text: human

text: hTERT-L2/HCT116 mixture sample 7

text: Homo sapiens

text: Homo sapiens


ERS1816596 (SAMEA104157578)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816596 (SAMEA104157578)

text: human

text: hTERT-L2/HCT116 mixture sample 13

text: Homo sapiens

text: Homo sapiens


ERS1816597 (SAMEA104157579)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816597 (SAMEA104157579)

text: human

text: hTERT-L2/HCT116 mixture sample 14

text: Homo sapiens

text: Homo sapiens


ERS1816598 (SAMEA104157580)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816598 (SAMEA104157580)

text: human

text: hTERT-L2/HCT116 mixture sample 15

text: Homo sapiens

text: Homo sapiens


ERS1816599 (SAMEA104157581)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816599 (SAMEA104157581)

text: human

text: hTERT-L2/HCT116 mixture sample 16

text: Homo sapiens

text: Homo sapiens


ERS1816600 (SAMEA104157582)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816600 (SAMEA104157582)

text: human

text: hTERT-L2/HCT116 mixture sample 17

text: Homo sapiens

text: Homo sapiens


ERS1816601 (SAMEA104157583)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816601 (SAMEA104157583)

text: human

text: hTERT-L2/HCT116 mixture sample 18

text: Homo sapiens

text: Homo sapiens


ERS1816602 (SAMEA104157584)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816602 (SAMEA104157584)

text: human

text: hTERT-L2/HCT116 mixture sample 19

text: Homo sapiens

text: Homo sapiens


ERS1816603 (SAMEA104157585)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816603 (SAMEA104157585)

text: human

text: DAH55/DAH56 mixture sample 1

text: Homo sapiens

text: Homo sapiens


ERS1816604 (SAMEA104157586)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816604 (SAMEA104157586)

text: human

text: DAH55/DAH56 mixture sample 2

text: Homo sapiens

text: Homo sapiens


ERS1816605 (SAMEA104157587)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816605 (SAMEA104157587)

text: human

text: DAH55/DAH56 mixture sample 3

text: Homo sapiens

text: Homo sapiens


ERS1816606 (SAMEA104157588)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816606 (SAMEA104157588)

text: human

text: DAH55/DAH56 mixture sample 4

text: Homo sapiens

text: Homo sapiens


ERS1816607 (SAMEA104157589)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816607 (SAMEA104157589)

text: human

text: DAH55/DAH56 mixture sample 5

text: Homo sapiens

text: Homo sapiens


ERS1816608 (SAMEA104157590)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816608 (SAMEA104157590)

text: human

text: DAH55/DAH56 mixture sample 6

text: Homo sapiens

text: Homo sapiens


ERS1816609 (SAMEA104157591)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816609 (SAMEA104157591)

text: human

text: DAH55/DAH56 mixture sample 7

text: Homo sapiens

text: Homo sapiens


ERS1816610 (SAMEA104157592)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816610 (SAMEA104157592)

text: human

text: DAH55/DAH56 mixture sample 13

text: Homo sapiens

text: Homo sapiens


ERS1816611 (SAMEA104157593)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816611 (SAMEA104157593)

text: human

text: DAH55/DAH56 mixture sample 14

text: Homo sapiens

text: Homo sapiens


ERS1816612 (SAMEA104157594)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816612 (SAMEA104157594)

text: human

text: DAH55/DAH56 mixture sample 15

text: Homo sapiens

text: Homo sapiens


ERS1816613 (SAMEA104157595)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816613 (SAMEA104157595)

text: human

text: DAH55/DAH56 mixture sample 16

text: Homo sapiens

text: Homo sapiens


ERS1816614 (SAMEA104157596)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816614 (SAMEA104157596)

text: human

text: DAH55/DAH56 mixture sample 17

text: Homo sapiens

text: Homo sapiens


ERS1816615 (SAMEA104157597)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816615 (SAMEA104157597)

text: human

text: DAH55/DAH56 mixture sample 18

text: Homo sapiens

text: Homo sapiens


ERS1816616 (SAMEA104157598)

text: BRITISH COLUMBIA CANCER RESEARCH CENTRE

text: public

text: ERS1816616 (SAMEA104157598)

text: human

text: DAH55/DAH56 mixture sample 19

text: Homo sapiens

text: Homo sapiens


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

tag: Namespace:QUEEN MARY UNIVERSITY OF LONDON

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


CIAS

text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: CIAS

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: CIAS


CICVD

text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: CICVD

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: CICVD


CINHA

text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: CINHA

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: CINHA


CISG

text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: CISG

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: CISG


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: gray wolf

text: Canis lupus

text: Canis lupus


text: RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY

text: public

tag: Namespace:RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY

text: inshore hagfish

text: adult

characteristic: dev stage

text: Eptatretus burgeri

text: Eptatretus burgeri

text: testis

characteristic: tissue type

text: RNAseq data from the testis of the hagfish Eptatretus burgeri


characteristic: ENA-CHECKLIST

text: RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY

text: public

text: inshore hagfish

text: adult

text: Eptatretus burgeri

text: Eptatretus burgeri

text: heart

text: RNAseq data from the heart of the hagfish Eptatretus burgeri

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY

text: public

text: inshore hagfish

text: adult

text: Eptatretus burgeri

text: Eptatretus burgeri

text: kidney

text: RNAseq data from kidney of the hagfish Eptatretus burgeri


text: RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY

text: public

text: inshore hagfish

text: adult

text: Eptatretus burgeri

characteristic: organism

text: Eptatretus burgeri

text: skeletal muscle

text: RNAseq data from skeletal muscle of the hagfish Eptatretus burgeri


text: RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY

text: public

text: inshore hagfish

text: adult

text: Eptatretus burgeri

text: Eptatretus burgeri

text: intestine

text: RNAseq data from the intestine of the hagfish Eptatretus burgeri


text: RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY

text: public

text: inshore hagfish

text: adult

text: Eptatretus burgeri

text: Eptatretus burgeri

text: liver

text: RNAseq data from the liver of the hagfish Eptatretus burgeri


text: RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY

text: public

text: inshore hagfish

text: adult

text: Eptatretus burgeri

text: Eptatretus burgeri

text: gill

text: RNAseq data from gills of the hagfish Eptatretus burgeri


text: RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY

text: public

text: inshore hagfish

text: adult

text: Eptatretus burgeri

text: Eptatretus burgeri

text: blood

text: RNAseq data from blood of the hagfish Eptatretus burgeri


text: SMU

text: public

text: feces metagenome

text: feces metagenome

text: feces metagenome


text: public

tag: Namespace:BIOGEST-SITEIA University of Modena and Reggio Emilia

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Thaibonnet

characteristic: cultivar

text: Protocols: Rice seeds were de-hulled, sterilized with 5% (v/v) hypochlorite and washed several times with sterile water. Seeds were maintained in 1%-agar plate ½ MS medium in the dark at 30°C for 2 days. Seedlings were grown in a growth cabinet under a 14 h-light photoperiod, PAR 50 µmol m-2 s-1 provided by fluorescent lamps with temperature of 28/10°C day/night. Total RNA was extracted from shoots using Spectrum™ Plant Total RNA Kit (Sigma Aldrich, USA) and DNA was removed using the Turbo DNA-free™ Kit (Ambion by Life Technology, USA). lllumina TruSEQ RNA-Seq library construction protocol, not stranded

characteristic: description

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: shoot

characteristic: organism part

text: cold stress sensitive

characteristic: phenotype

characteristic: replicate

text: Oryza sativa Japonica Group


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOGEST-SITEIA University of Modena and Reggio Emilia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: Japanese rice

characteristic: common name

text: Thaibonnet

text: seedling development stage

text: wild type genotype

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: shoot

text: cold stress sensitive

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: Japanese rice

text: Volano

text: seedling development stage

text: wild type genotype

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: shoot

text: cold stress tolerant

text: Oryza sativa Japonica Group

characteristic: title


text: ES Cells

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Mus musculus

text: ES Cells

text: Mus musculus

characteristic: subject id


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF EXETER

text: public

tag: Namespace:UNIVERSITY OF EXETER

text: Isolated from Barley Leaf

characteristic: description

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: Genomic sequence of Magnaporthe oryzae isolated from Bangladesh in 2016 and 2017


characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

text: public

text: Isolated from wheat spike

text: Magnaporthe oryzae

text: Magnaporthe oryzae


text: UNIVERSITY OF EXETER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Isolated from wheat seed

text: Magnaporthe oryzae

text: Magnaporthe oryzae


text: UNIVERSITY OF EXETER

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Isolated from Torpedo grass

text: Magnaporthe oryzae

text: Magnaporthe oryzae


characteristic: ENA-CHECKLIST

text: Rijksuniversiteit Groningen

text: public

tag: Namespace:Rijksuniversiteit Groningen

characteristic: collection date

text: Microbiome

text: sea water

characteristic: environment (biome)

text: sea water

characteristic: environment (feature)

text: sponge

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

text: 42º 06' 52.6 N

characteristic: geographic location (latitude)

text: 3º 10' 02.0 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Dysidea avara

text: BluePharmTrain

characteristic: project name

text: Dysidea avara

text: Illumina MiSeq PE 300

characteristic: sequencing method

unit: ºC

characteristic: temperature


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Rijksuniversiteit Groningen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Microbiome

characteristic: description

text: sea water

text: sea water

text: sponge

text: Spain

text: 42º 06' 52.6 N

text: 3º 10' 02.0 E

text: host-associated

text: mimarks-survey

text: Aplysina aerophoba

characteristic: organism

text: BluePharmTrain

text: Aplysina aerophoba

text: Illumina MiSeq PE 300

characteristic: title


characteristic: ENA-CHECKLIST

text: Rijksuniversiteit Groningen

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Microbiome

text: sea water

characteristic: environment (biome)

text: sea water

characteristic: environment (feature)

text: sponge

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 24º 39' 36 N

characteristic: geographic location (latitude)

text: 81º 27' 36 W

text: host-associated

text: mimarks-survey

text: Dysidea etheria

text: BluePharmTrain

text: Dysidea etheria

text: Illumina MiSeq PE 300


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Rijksuniversiteit Groningen

characteristic: INSDC center name

text: public

text: row pore rope sponge

characteristic: common name

text: Microbiome

text: sea water

text: sea water

text: sponge

text: USA

text: 24º 39' 36 N

text: 81º 27' 36 W

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Aplysina cauliformis

text: BluePharmTrain

characteristic: project name

text: Aplysina cauliformis

text: Illumina MiSeq PE 300

characteristic: sequencing method

characteristic: temperature


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF FLORENCE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF FLORENCE

characteristic: Submitter Id

text: feces

characteristic: bio material

text: human

text: pediatric patients

characteristic: host scientific name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: crohn's disease gut microbiota

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY HOHENHEIM

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY HOHENHEIM

characteristic: collection date

text: feces

characteristic: description

text: feces

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: feces metagenome

text: Effects of Soluble Phosphate in Humans

text: feces metagenome

text: amplicon illumina sequencing

text: feces


characteristic: ENA-CHECKLIST

text: TEAGASC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: mouse

text: intestinal

text: stool

text: USA

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Mus musculus

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Rijksuniversiteit Groningen

characteristic: INSDC center name

text: public

characteristic: collection date

text: Microbiome

characteristic: description

text: sea water

characteristic: environment (biome)

text: sea water

characteristic: environment (feature)

text: sea water

text: Spain

text: 42° 06' 52.6 N

text: 3° 10' 02.0 E

text: mimarks-survey

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: marine plankton metagenome

characteristic: organism

text: BluePharmTrain

text: marine plankton metagenome

text: Illumina MiSeq PE 300

characteristic: title


characteristic: ENA-CHECKLIST

text: Rijksuniversiteit Groningen

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Microbiome

text: sea water

text: sea water

text: sea water

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: 24° 39' 36 N

characteristic: geographic location (latitude)

text: 81° 27' 36 W

text: mimarks-survey

text: marine plankton metagenome

text: BluePharmTrain

text: marine plankton metagenome

text: Illumina MiSeq PE 300


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ABERDEEN

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF ABERDEEN

text: Blank

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5291 Normal Sample High BMI

characteristic: description

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5291 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5294 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5294 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5295 Normal Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5295 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5314 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5314 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5331 Normal Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5331 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5332 Normal Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5332 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5354 Normal Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5354 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5355 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5355 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5357 Normal Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5357 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5364 Normal Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5364 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5365 Normal Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5365 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5378 Normal Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5378 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5381 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5381 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5398 Normal Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5398 Tumour Sample High BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5399 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5399 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5405 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5405 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5420 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5420 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5450 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5450 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5452 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5452 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5457 Normal Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: 5457 Tumour Sample Low BMI

text: human gut metagenome

text: human gut metagenome


text: DUKE UNIV

text: public

tag: Namespace:DUKE UNIV

text: house mouse

characteristic: common name

text: sarcoma tumor tissue

text: female

characteristic: gender

text: Mus musculus

text: sarcoma tumor

characteristic: phenotype

text: disease tissue

characteristic: sample type

text: Mus musculus

characteristic: subject id


characteristic: ENA-CHECKLIST

text: DUKE UNIV

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: sarcoma tumor tissue

text: male

text: Mus musculus

characteristic: organism

text: sarcoma tumor

text: disease tissue

text: Mus musculus

characteristic: title


text: DUKE UNIV

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: sarcoma paired normal tissue

text: female

text: Mus musculus

text: paired normal

text: normal tissue

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DUKE UNIV

text: public

text: house mouse

text: sarcoma paired normal tissue

text: male

text: Mus musculus

text: paired normal

text: normal tissue

text: Mus musculus


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:European Molecular Biology Laboratory, European Bioinformatics Institute

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: Protocols: Animals were bred on a 12-hour light-dark cycle. After weaning at 21 days, they were given normal chow (Teklad 7913 - Harlan Teklad NIH-31 irradiated, 18% protein, 6% fat). At 15 weeks of age they were switched to a 4% NaCl diet (Teklad 7913 modified with 4% NaCl) until they were humanely euthanized with CO2 at 18 weeks of age. All tissues were preserved in RNAlater reagent. 'About 500mg of RNAlater-treated tissue was homogenized in 2mL TRIzol (Invitrogen) and was generally extracted with the manfucturer''s instructions, with the exception that, following phase separation, 250uL of 50% isopropanol was added to the aqueous phase for each 1mL of TRIzol used prior to isopropanol precipitation. DNA was digested by RNAse-free DNAse (Roche). RNA quantity was quantified using Nanodrop (Thermo Fisher) and integrity qualified with Bioanalyzer 2011 (Agilent).' 'Libraries were prepared following the LT protocol of Illumina TruSeq RNA Library Kit v2 according to manufacturer''s instructions. Libraries were quantified by KAPA SYBR FAST Library Quantification kit.'

text: metabolic syndrome

characteristic: disease

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

characteristic: organism part

text: susceptible to metabolic syndrome

text: Rattus norvegicus

text: male

characteristic: sex

text: LH/MRrrcAek

characteristic: strain


tag: attribute

characteristic: ENA-CHECKLIST

text: European Molecular Biology Laboratory, European Bioinformatics Institute

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Norway rat

characteristic: common name

characteristic: description

text: metabolic syndrome

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

text: susceptible to metabolic syndrome

characteristic: phenotype

text: Rattus norvegicus

text: male

text: LH/MRrrcAek


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: Norway rat

text: obesity

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: kidney

text: susceptible to obesity (intermediate metabolic syndrome)

text: Rattus norvegicus

text: male

text: LL/MRrrcAek

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: obesity

text: Rattus norvegicus

text: Rattus norvegicus

text: liver

text: Rattus norvegicus

text: male

text: LL/MRrrcAek


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: normal

characteristic: disease

text: Rattus norvegicus

text: Rattus norvegicus

text: kidney

characteristic: organism part

text: resistant to metabolic syndrome and obesity

text: Rattus norvegicus

text: male

characteristic: sex

text: LN/MRrrcAek


characteristic: ENA-CHECKLIST

text: HASSELT UNIVERSITY

characteristic: INSDC first public

text: public

tag: Namespace:HASSELT UNIVERSITY

characteristic: collection date

text: area of cropland

characteristic: environment (biome)

text: area of cropland

characteristic: environment (feature)

text: agricultural soil

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: metagenomes

text: Maize microbiome under nanosilver exposure

characteristic: project name

text: metagenomes

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Bulk soil not exposed to nanosilver, sample 1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HASSELT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: area of cropland

text: area of cropland

text: agricultural soil

text: Belgium

text: metatranscriptome

text: metagenomes

characteristic: organism

text: metagenomes

text: Illumina

text: soil

text: Bulk soil not exposed to nanosilver, sample 2

characteristic: title


characteristic: ENA-CHECKLIST

text: HASSELT UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: collection date

text: area of cropland

characteristic: environment (biome)

text: area of cropland

characteristic: environment (feature)

text: agricultural soil

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: metagenomes

text: metagenomes

text: Illumina

text: soil

text: Bulk soil not exposed to nanosilver, sample 3


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HASSELT UNIVERSITY

text: public

text: area of cropland

text: area of cropland

text: agricultural soil

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: metagenomes

characteristic: project name

text: metagenomes

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Bulk soil exposed to nanosilver, sample 1


characteristic: ENA-CHECKLIST

text: HASSELT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: area of cropland

text: area of cropland

text: agricultural soil

text: Belgium

text: metatranscriptome

text: metagenomes

characteristic: organism

text: metagenomes

text: Illumina

text: soil

text: Bulk soil exposed to nanosilver, sample 2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HASSELT UNIVERSITY

text: public

characteristic: collection date

text: area of cropland

characteristic: environment (biome)

text: area of cropland

characteristic: environment (feature)

text: agricultural soil

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: metagenomes

text: metagenomes

text: Illumina

text: soil

text: Bulk soil exposed to nanosilver, sample 3


characteristic: ENA-CHECKLIST

characteristic: External Id

text: HASSELT UNIVERSITY

characteristic: INSDC center name

text: public

text: area of cropland

text: area of cropland

text: agricultural soil

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: metagenomes

characteristic: project name

text: metagenomes

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Rhizosphere soil not exposed to nanosilver, sample 1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HASSELT UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: area of cropland

text: area of cropland

text: agricultural soil

text: Belgium

text: metatranscriptome

text: metagenomes

characteristic: organism

text: metagenomes

text: Illumina

text: soil

text: Rhizosphere soil not exposed to nanosilver, sample 2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: HASSELT UNIVERSITY

text: public

characteristic: collection date

text: area of cropland

characteristic: environment (biome)

text: area of cropland

characteristic: environment (feature)

text: agricultural soil

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: metagenomes

text: metagenomes

text: Illumina

text: soil

text: Rhizosphere soil not exposed to nanosilver, sample 3