characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: glucose deprivation

text: SC-his minus glucose

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4E

characteristic: phenotype

text: Saccharomyces cerevisiae

text: Mat a

text: fresh specimen


status: PUBLIC

tag: attribute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Division of Cardiovascular Sciences School of Medicine Faculty of Biology Medicine and Health Manchester Academic Health Science Centre The University of Manchester

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: Protocols: Strains were grown at 30°C in synthetic complete dextrose media lacking histidine [SCD-his] grown to A600=~0.6. Harvest cells by rapid centrifugation in a warm centrifuge and resuspend them in pre-warmed SC-his medium lacking glucose (-glu for 10 min). Yeast cultures were grown to A600=~0.6, pelleted, snap frozen in liquid nitrogen and ground in Buffer A (20 mM Tris-HCl [pH 8], 140 mM NaCl, 1 mM MgCl2, 0.5% NP40, 0.5 mM DTT, 1 mM PMSF, EDTA free Protease Inhibitor cocktail tablet (Roche), 100 µM NaV3O4, 5 mM NaF and 40 units/ml RNAsin) using liquid nitrogen and a 6870 Freezer Mill (Spex). Lysates were cleared through two centrifugation steps (15,000 x g at 4°C) and quantified using Bradford Reagent. 10 mg total protein was loaded onto Rabbit IgG coupled Tosyl-activated Dynabeads M-280 magnetic beads (Dynal) to ensure maximum depletion of the tagged protein from each extract. After the final wash, the beads were re-suspended in 270 µl Buffer A. A 20 µl aliquot of the sample was set aside for western blot analysis, and RNA was purified from the remaining 250 µl for RNAseq. Triplicate samples of TAP associated RNA was isolated on M-280 magnetic beads as described above. For RNA target identification, after the final wash, the beads were resuspended in 270 µl Buffer A. A 20 μl aliquot of the sample was set aside for western blot analysis, and RNA was purified from the remaining 250 μl. Total (T) RNA and paired immune precipitated (IP) RNA were isolated using a standard Trizol Reagent (Life Technologies, Carlsbad, CA) protocol and re-suspended in 10 µl diethylpyrocarbonate (DEPC) treated water. RNA was quantified using a Nanodrop 8000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA). rRNA was then depleted from both total and IP RNA samples using the RibominusTM Eukaryote Kit for RNA-Seq (Life Technologies, Carlsbad, CA). Depleted samples were ethanol precipitated, washed twice with 70% ethanol and resuspended in 10 µl DEPC water. rRNA depletion was assessed on a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA) using a RNA nanochip and the remaining RNA stored at -80°C. Sequencing libraries were generated using the whole Transcriptome Library Preparation protocol provided with the SOLiD® Total RNA-Seq Kit (Life Technologies, Carlsbad, CA) as described by the manufacturer.

characteristic: description

text: glucose deprivation

characteristic: environmental stress

text: MATa his3-1 leu20 met150 ura30 TIF4631::TAP-HIS3

characteristic: genotype

text: SC-his minus glucose

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4G1

characteristic: replicate

text: Saccharomyces cerevisiae

text: Mat a

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state

characteristic: strain

characteristic: title

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Division of Cardiovascular Sciences School of Medicine Faculty of Biology Medicine and Health Manchester Academic Health Science Centre The University of Manchester

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: Protocols: Strains were grown at 30°C in synthetic complete dextrose media lacking histidine [SCD-his] grown to A600=~0.6. Harvest cells by rapid centrifugation in a warm centrifuge and resuspend them in pre-warmed SC-his medium lacking glucose (-glu for 10 min). Triplicate samples of TAP associated RNA was isolated on M-280 magnetic beads as described above. For RNA target identification, after the final wash, the beads were resuspended in 270 µl Buffer A. A 20 μl aliquot of the sample was set aside for western blot analysis, and RNA was purified from the remaining 250 μl. Total (T) RNA and paired immune precipitated (IP) RNA were isolated using a standard Trizol Reagent (Life Technologies, Carlsbad, CA) protocol and re-suspended in 10 µl diethylpyrocarbonate (DEPC) treated water. RNA was quantified using a Nanodrop 8000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA). rRNA was then depleted from both total and IP RNA samples using the RibominusTM Eukaryote Kit for RNA-Seq (Life Technologies, Carlsbad, CA). Depleted samples were ethanol precipitated, washed twice with 70% ethanol and resuspended in 10 µl DEPC water. rRNA depletion was assessed on a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA) using a RNA nanochip and the remaining RNA stored at -80°C. Sequencing libraries were generated using the whole Transcriptome Library Preparation protocol provided with the SOLiD® Total RNA-Seq Kit (Life Technologies, Carlsbad, CA) as described by the manufacturer.

text: glucose deprivation

text: SC-his minus glucose

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4G1

characteristic: phenotype

text: Saccharomyces cerevisiae

text: Mat a

text: fresh specimen


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: glucose deprivation

text: MATa his3-1 leu20 met150 ura30 CDC33::TAP-HIS3

text: SC-his minus glucose

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4E

text: Saccharomyces cerevisiae

text: Mat a

text: fresh specimen


text: public

text: ArrayExpress

text: baker's yeast

characteristic: description

text: glucose deprivation

characteristic: environmental stress

characteristic: genotype

text: SC-his minus glucose

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4G1

characteristic: replicate

text: Saccharomyces cerevisiae

text: Mat a

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: glucose deprivation

text: MATa his3-1 leu20 met150 ura30 TIF4632::TAP-HIS3

text: SC-his minus glucose

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4G2

text: Saccharomyces cerevisiae

text: Mat a

text: fresh specimen

characteristic: strain

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: glucose deprivation

text: SC-his minus glucose

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4G2

characteristic: phenotype

text: Saccharomyces cerevisiae

text: Mat a

text: fresh specimen


text: public

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: Protocols: Strains were grown at 30°C in synthetic complete dextrose media lacking histidine [SCD-his] grown to A600=~0.6. Addition of 0.4 mM H2O2 (+H2O2 for 15 min) prior to cell harvest. Triplicate samples of TAP associated RNA was isolated on M-280 magnetic beads as described above. For RNA target identification, after the final wash, the beads were resuspended in 270 µl Buffer A. A 20 μl aliquot of the sample was set aside for western blot analysis, and RNA was purified from the remaining 250 μl. Total (T) RNA and paired immune precipitated (IP) RNA were isolated using a standard Trizol Reagent (Life Technologies, Carlsbad, CA) protocol and re-suspended in 10 µl diethylpyrocarbonate (DEPC) treated water. RNA was quantified using a Nanodrop 8000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA). rRNA was then depleted from both total and IP RNA samples using the RibominusTM Eukaryote Kit for RNA-Seq (Life Technologies, Carlsbad, CA). Depleted samples were ethanol precipitated, washed twice with 70% ethanol and resuspended in 10 µl DEPC water. rRNA depletion was assessed on a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA) using a RNA nanochip and the remaining RNA stored at -80°C. Sequencing libraries were generated using the whole Transcriptome Library Preparation protocol provided with the SOLiD® Total RNA-Seq Kit (Life Technologies, Carlsbad, CA) as described by the manufacturer.

characteristic: description

text: oxidative stress

characteristic: environmental stress

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4G1

characteristic: replicate

text: Saccharomyces cerevisiae

text: Mat a

text: fresh specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: baker's yeast

text: oxidative stress

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4G2

text: Saccharomyces cerevisiae

text: Mat a

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: Protocols: Strains were grown at 30°C in synthetic complete dextrose media lacking histidine [SCD-his] grown to A600=~0.6. Addition of 0.4 mM H2O2 (+H2O2 for 15 min) prior to cell harvest. Yeast cultures were grown to A600=~0.6, pelleted, snap frozen in liquid nitrogen and ground in Buffer A (20 mM Tris-HCl [pH 8], 140 mM NaCl, 1 mM MgCl2, 0.5% NP40, 0.5 mM DTT, 1 mM PMSF, EDTA free Protease Inhibitor cocktail tablet (Roche), 100 µM NaV3O4, 5 mM NaF and 40 units/ml RNAsin) using liquid nitrogen and a 6870 Freezer Mill (Spex). Lysates were cleared through two centrifugation steps (15,000 x g at 4°C) and quantified using Bradford Reagent. 10 mg total protein was loaded onto Rabbit IgG coupled Tosyl-activated Dynabeads M-280 magnetic beads (Dynal) to ensure maximum depletion of the tagged protein from each extract. After the final wash, the beads were re-suspended in 270 µl Buffer A. A 20 µl aliquot of the sample was set aside for western blot analysis, and RNA was purified from the remaining 250 µl for RNAseq. Triplicate samples of TAP associated RNA was isolated on M-280 magnetic beads as described above. For RNA target identification, after the final wash, the beads were resuspended in 270 µl Buffer A. A 20 μl aliquot of the sample was set aside for western blot analysis, and RNA was purified from the remaining 250 μl. Total (T) RNA and paired immune precipitated (IP) RNA were isolated using a standard Trizol Reagent (Life Technologies, Carlsbad, CA) protocol and re-suspended in 10 µl diethylpyrocarbonate (DEPC) treated water. RNA was quantified using a Nanodrop 8000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA). rRNA was then depleted from both total and IP RNA samples using the RibominusTM Eukaryote Kit for RNA-Seq (Life Technologies, Carlsbad, CA). Depleted samples were ethanol precipitated, washed twice with 70% ethanol and resuspended in 10 µl DEPC water. rRNA depletion was assessed on a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA) using a RNA nanochip and the remaining RNA stored at -80°C. Sequencing libraries were generated using the whole Transcriptome Library Preparation protocol provided with the SOLiD® Total RNA-Seq Kit (Life Technologies, Carlsbad, CA) as described by the manufacturer.

text: oxidative stress

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4G2

text: Saccharomyces cerevisiae

text: Mat a

text: fresh specimen

characteristic: strain

characteristic: title


text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: oxidative stress

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4E

characteristic: phenotype

text: Saccharomyces cerevisiae

text: Mat a

text: fresh specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: baker's yeast

characteristic: description

text: oxidative stress

characteristic: environmental stress

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4E

characteristic: replicate

text: Saccharomyces cerevisiae

text: Mat a

text: fresh specimen


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: baker's yeast

text: oxidative stress

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: expression of TAP-His-tagged eIF4G1

text: Saccharomyces cerevisiae

text: Mat a

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


text: National Swine Fever Reference Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:National Swine Fever Reference Center

characteristic: Submitter Id

text: IZSUM

characteristic: collecting institution

characteristic: collection date

text: Giammarioli M.

characteristic: collector name

text: We sequenced the complete genome of Bovine viral diarrhea virus (BVDV) strain VE/138/05. It belongs to the subgenotype 1a. In the sample has been found the co-presence of both biotypes, non-cytophatic (ncp) and cytophatic (cp) of the BVDV-1a strain VE/138/05. The complete cytophatic (cp) genome is 12681 nucleotides (nt) it includes a 423 bp insertion of bovin polyubiquitin located into NS2/3 protein sequence; the open reading frame is 12117 nt, coding 4039 amino acids.

text: Italy

characteristic: geographic location (country and/or sea)

text: Veneto, Padova

characteristic: geographic location (region and locality)

text: bos taurus

characteristic: host common name

text: diseased

characteristic: host health state

text: bos taurus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Bovine viral diarrhea virus 1

text: Bovine viral diarrhea virus 1

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: National Swine Fever Reference Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: IZSUM

text: Giammarioli M.

text: We sequenced the complete genome of Bovine viral diarrhea virus (BVDV) strain VE/138/05. It belongs to the subgenotype 1a. In the sample has been found the co-presence of both biotypes, non-cytophatic (ncp) and cytophatic (cp) of the BVDV-1a strain VE/138/05. The complete non-cytophatic (ncp) genome is 12258 nucleotides (nt); the open reading frame is 11694 nt, coding 3898 amino acids.

characteristic: description

text: Italy

text: Veneto, Padova

text: bos taurus

text: diseased

text: bos taurus

text: female

text: Bovine viral diarrhea virus 1

characteristic: organism

text: Bovine viral diarrhea virus 1


text: URMITE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Clostridiales bacterium mt7

text: Clostridiales bacterium mt7

characteristic: strain

text: Urmitella massiliensis genome


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: URMITE

text: public

text: Bacillus massiliogabonensis

text: Bacillus massiliogabonensis

text: Bacillus massiliogabonensis genome

characteristic: title


characteristic: ENA-CHECKLIST

text: URMITE

text: public

text: Pygmaiobacter massiliensis

text: Pygmaiobacter massiliensis

text: Pygmaiobacter massiliensis genome


characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

text: Collinsella sp. Marseille-P3740

text: Collinsella sp. Marseille-P3740

text: Collinsella provencensis genome


characteristic: ENA-LAST-UPDATE

text: NETHERLANDS INSTITUTE OF ECOLOGY

text: public

tag: Namespace:NETHERLANDS INSTITUTE OF ECOLOGY

characteristic: collection date

text: rhizosphere

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Ion Torrent

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: External Id

text: Icahn School of Medicine at Mount Sinai

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Icahn School of Medicine at Mount Sinai

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: All patients were enrolled at Icahn School of Medicine at Mount Sinai (ISMMS) and provided informed consent for tissue biobanking. Samples were provided by the ISMMS Biorepository. All patients were diagnosed with hepatocellular carcinoma based on the EASL guidelines, and were treatment-naïve prior to surgical resection. The different regions were sampled allowing for at least 1 cm of distance between each other. The final number of regions per tumor varied according to tissue availability and presence of tumor necrosis. Each tumor and adjacent tissue sample was split in half to allow for mirrored histological and molecular analysis. Half of the sample was immediately stored in RNA-later (Qiagen) for 24 hours at 4°C, and subsequently at -80°C, and the other half was embedded in OCT and stored at -80°C. DNA was extracted from samples using the DNeasy blood and tissue kit (Qiagen) following manufacturer’s instructions. Target enrichment was performed using Agilent SureSelect Custom Capture for a panel of 58 genes that are known drivers of hepatocellular carcinoma. Libraries were prepared using the TruSeq DNA Library Prep Kit HT following manufacturer's protocol.

characteristic: description

text: normal

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Liver

characteristic: organism part

text: normal tissue adjacent to tumour

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Icahn School of Medicine at Mount Sinai

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Liver

text: normal tissue adjacent to tumour

text: Homo sapiens

text: male


text: Icahn School of Medicine at Mount Sinai

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: peripheral blood cells

text: peripheral blood cells

text: Homo sapiens

text: male


text: Icahn School of Medicine at Mount Sinai

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: hepatocellular carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Liver

text: neoplasm

text: Homo sapiens

text: female


text: Icahn School of Medicine at Mount Sinai

text: public

text: ArrayExpress

text: human

text: hepatocellular carcinoma

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Liver

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Evolutionary Biology Centre

text: public

tag: Namespace:Evolutionary Biology Centre

text: Leptidea sinapis

text: Leptidea sinapis

characteristic: title


text: Evolutionary Biology Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: L. sinapis (Kaz) Paired end

text: Leptidea sinapis

text: Leptidea sinapis


text: Evolutionary Biology Centre

text: public

characteristic: Submitter Id

text: L. juvernica (Kaz) Paired end

characteristic: description

text: Leptidea juvernica

text: Leptidea juvernica


E-MTAB-5911:ARPP21 iCLIP replicate 1

text: public

text: E-MTAB-5911:ARPP21 iCLIP replicate 1

tag: Namespace:Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Flp-In-TREx-293 cells from ThermoScientific were used to generate cell lines expressing murine full-length ARPP21 upon doxycycline addition (iARPP21 cells). ARPP21 was cloned in the pENTR4 vector and transferred by Gateway cloning into the pFRT-FLAG-HA-DEST vector to provide N-terminal FLAG and HA tags and flanking FRT sites necessary for Flp recombination. Cloning and cell line generation was accomplished following Spitzer et al., 2013 (http://dx.doi.org/10.1016/B978-0-12-418687-3.00008-2). iARPP21 cells were seeded in DMEM with 10% FBS and 1 µg/ml Doxycycline. 48h after seeding, the cells were subjected to UV-crosslinking and harvested. iCLIP was performed with the mouse monoclonal HA antibody #26183, Thermo Scientific, following the improved protocol fromHuppertz et al, 2014 (http://dx.doi.org/10.1016/j.ymeth.2013.10.011). A detailed protocol with all modifications of the initial protocol can be found under Supplementary Methods. The retrieval of protein-bound RNAs and construction of Illumina compatible libraries was done as described in Huppertz et al, 2014 (http://dx.doi.org/10.1016/j.ymeth.2013.10.011).

text: doxycycline-inducible expression of HA-tagged ARPP21

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

characteristic: replicate

text: Homo sapiens

text: ARPP21 iCLIP replicate 1


E-MTAB-5911:ARPP21 iCLIP replicate 2

characteristic: ENA-CHECKLIST

text: Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany

text: public

text: E-MTAB-5911:ARPP21 iCLIP replicate 2

text: ArrayExpress

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: ARPP21 iCLIP replicate 2


E-MTAB-5911:ARPP21 iCLIP replicate 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5911:ARPP21 iCLIP replicate 3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: ARPP21 iCLIP replicate 3


E-MTAB-5911:ARPP21 iCLIP replicate 4

characteristic: External Id

text: public

text: E-MTAB-5911:ARPP21 iCLIP replicate 4

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: ARPP21 iCLIP replicate 4

characteristic: title


text: Evolutionary Biology Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: L. reali (Spa) Paired end

text: Leptidea reali

text: Leptidea reali


text: Icahn School of Medicine at Mount Sinai

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: human

text: Protocols: All patients were enrolled at Icahn School of Medicine at Mount Sinai (ISMMS) and provided informed consent for tissue biobanking. Samples were provided by the ISMMS Biorepository. All patients were diagnosed with hepatocellular carcinoma based on the EASL guidelines, and were treatment-naïve prior to surgical resection. The different regions were sampled allowing for at least 1 cm of distance between each other. The final number of regions per tumor varied according to tissue availability and presence of tumor necrosis. Each tumor and adjacent tissue sample was split in half to allow for mirrored histological and molecular analysis. Half of the sample was immediately stored in RNA-later (Qiagen) for 24 hours at 4°C, and subsequently at -80°C, and the other half was embedded in OCT and stored at -80°C. RNA was extracted from HCC samples using the RNeasy mini kit (Qiagen) following manufacturer’s instructions. Illumina TruSeq RNA Sample Prep Kit v2. Performed by Mount Sinai core facility according to manufacturer's protocol. See protocol at https://support.illumina.com/sequencing/sequencing_kits/truseq_rna_sample_prep_kit_v2.html

text: hepatocellular carcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex


text: Icahn School of Medicine at Mount Sinai

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: hepatocellular carcinoma

text: Homo sapiens

text: Homo sapiens

text: liver

text: neoplasm

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Icahn School of Medicine at Mount Sinai

text: public

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: normal tissue adjacent to tumour

text: Homo sapiens

text: male


text: Icahn School of Medicine at Mount Sinai

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: liver

text: normal tissue adjacent to tumour

text: Homo sapiens

text: female

characteristic: title


text: Evolutionary Biology Centre

text: public

text: Leptidea juvernica

text: Leptidea juvernica


text: public

tag: Namespace:LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI

text: Apicotermitinae worker

text: metagenome

text: metagenome


text: LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI

text: public

text: Apicotermitinae nest

text: metagenome

text: metagenome


text: public

text: Apicotermitinae worker

text: metagenome

text: metagenome


text: public

text: Silvestritermes sp worker

text: metagenome

text: metagenome


text: public

text: Silvestritermes sp nest

text: metagenome

text: metagenome


text: public

text: Silvestritermes sp soldier

text: metagenome

text: metagenome


text: public

text: Syntermes sp food

text: metagenome

text: metagenome


text: public

text: Syntermes sp worker

text: metagenome

text: metagenome


text: public

text: Syntermes sp nest

text: metagenome

text: metagenome


text: public

text: Syntermes sp soldier

text: metagenome

text: metagenome


text: public

text: Velocitermes sp food

text: metagenome

text: metagenome


text: public

text: Velocitermes sp worker

text: metagenome

text: metagenome


text: public

text: Velocitermes sp nest

text: metagenome

text: metagenome


text: public

text: Velocitermes sp soldier

text: metagenome

text: metagenome


text: Department of Surgery

text: public

tag: Namespace:Department of Surgery

characteristic: collection date

text: wetland

characteristic: environment (biome)

text: mangrove

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured bacterium

text: Salinity and nitrogen cycle

characteristic: project name

text: uncultured bacterium

text: sediment

characteristic: sediment environmental package

text: Miseq

characteristic: sequencing method

text: Salinity impacted nitrogen cycle


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Surgery

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: wetland

text: mangrove

text: sediment

text: China

text: metagenome

text: uncultured bacterium

characteristic: organism

text: Salinity and nitrogen cycle

text: uncultured bacterium

text: sediment

text: Miseq

text: Salinity impacted nitrogen cycle


ROAP

text: Department of Biological Sciences

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ROAP

tag: Namespace:Department of Biological Sciences

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ROAP

text: Illicium parviflorum

text: Illicium parviflorum

text: HiSeq

characteristic: sequencer

text: Soltis and Miles 2799

text: leaves

characteristic: tissue type

text: OneKP Sample ID: ROAP

characteristic: title


VZCI

text: Department of Biological Sciences

text: public

text: VZCI

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VZCI

text: Illicium floridanum

text: Illicium floridanum

text: HiSeq

text: Soltis and Miles 2960

text: young leaves

text: OneKP Sample ID: VZCI


FZJL

text: Department of Biological Sciences

text: public

text: FZJL

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FZJL

text: Austrobaileya scandens

text: Austrobaileya scandens

text: HiSeq

text: JLM2013-22 (GA)

text: young shoot

text: OneKP Sample ID: FZJL


NPND

text: Department of Biological Sciences

text: public

text: NPND

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: NPND

text: Ceratophyllum demersum

text: Ceratophyllum demersum

text: GA II

text: Soltis and Miles 2755

text: leaves

text: OneKP Sample ID: NPND


DDEV

text: Department of Biological Sciences

text: public

text: DDEV

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: DDEV

text: Canella winterana

text: Canella winterana

text: HiSeq

text: Soltis and Miles 2995

text: young leaves

text: OneKP Sample ID: DDEV


IFCJ

text: Department of Biological Sciences

text: public

text: IFCJ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: IFCJ

text: This sample was not analyzed for the 1KP publication [Nature 574, 679-685 (2019)] because it was identified as mislabeled and/or contaminated. We released the data nonetheless as some find even these data useful. More information is given at [GigaScience 8, giz126 (2019)], including estimates of which particular sequences might be problematic.

characteristic: details

text: Canella winterana

text: Canella winterana

text: HiSeq

text: Soltis and Miles 2995

text: mislabelled or contaminated

characteristic: status

text: young leaves

text: OneKP Sample ID: IFCJ


WKSU

characteristic: ENA-CHECKLIST

text: Department of Biological Sciences

text: public

text: WKSU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WKSU

text: Drimys winteri

text: Drimys winteri

text: HiSeq

text: Soltis and Miles 2843

text: leaves

text: OneKP Sample ID: WKSU


WAIL

characteristic: ENA-FIRST-PUBLIC

text: Department of Biological Sciences

text: public

text: WAIL

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WAIL

text: Laurelia sempervirens

text: Laurelia sempervirens

text: HiSeq

text: OneKP Sample ID: WAIL


FALI

characteristic: ENA-LAST-UPDATE

text: Department of Biological Sciences

text: public

text: FALI

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FALI

text: Calycanthus floridus

text: Calycanthus floridus

text: HiSeq

text: Soltis and Miles 2752

text: leaves

text: OneKP Sample ID: FALI


WPHN

characteristic: External Id

text: Department of Biological Sciences

text: public

text: WPHN

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WPHN

text: Idiospermum australiense

text: Idiospermum australiense

text: HiSeq

text: JLM2013-45 (GA)

text: young shoot

text: OneKP Sample ID: WPHN


MAQO

text: Department of Biological Sciences

characteristic: INSDC center name

text: public

text: MAQO

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MAQO

text: Gomortega keule

text: Gomortega keule

text: HiSeq

text: OneKP Sample ID: MAQO


BSVG

text: Department of Biological Sciences

characteristic: INSDC first public

text: public

text: BSVG

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BSVG

text: Gyrocarpus americanus

text: Gyrocarpus americanus

text: HiSeq

text: Soltis and Miles 2908

text: young leaves

text: OneKP Sample ID: BSVG


BCGB

text: Department of Biological Sciences

text: public

characteristic: SRA accession

text: BCGB

text: camphor tree

characteristic: common name

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BCGB

text: Cinnamomum camphora

text: Cinnamomum camphora

text: HiSeq

text: DWS NY424/43

text: leaves

text: OneKP Sample ID: BCGB


ABSS

text: Department of Biological Sciences

text: public

text: ABSS

characteristic: Submitter Id

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ABSS

characteristic: description

text: Sassafras albidum

text: Sassafras albidum

text: HiSeq

text: Soltis and Miles 2914

text: young leaves

text: OneKP Sample ID: ABSS


KAYP

text: Department of Biological Sciences

characteristic: INSDC last update

text: public

text: KAYP

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: KAYP

text: Lindera benzoin

characteristic: organism

text: Lindera benzoin

text: HiSeq

text: Soltis & Miles 2968

text: young leaves

text: OneKP Sample ID: KAYP


WIGA

text: Department of Biological Sciences

text: public

characteristic: INSDC status

text: WIGA

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WIGA

text: Persea borbonia

text: Persea borbonia

text: HiSeq

characteristic: sequencer

text: Soltis and Miles 2980

text: young leaves and shoots

text: OneKP Sample ID: WIGA


VYLQ

text: Department of Biological Sciences

text: public

text: VYLQ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VYLQ

text: Cassytha filiformis

text: Cassytha filiformis

text: HiSeq

text: OneKP Sample ID: VYLQ

characteristic: title


KRJP

text: Department of Biological Sciences

text: public

text: KRJP

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: KRJP � Peumus boldus Molina

text: Peumus boldus

text: Peumus boldus

text: HiSeq

text: Chase 34466 K

text: leaves

characteristic: tissue type

text: OneKP Sample ID: KRJP


YZRI

text: Department of Biological Sciences

text: public

text: YZRI

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: YZRI

text: Annona muricata

text: Annona muricata

text: HiSeq

text: Soltis and Miles 2753

text: leaves

text: OneKP Sample ID: YZRI


PSJT

text: Department of Biological Sciences

text: public

text: PSJT

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: PSJT � Uvaria microcarpa Champ. ex Benth.

text: Uvaria microcarpa

text: Uvaria microcarpa

text: HiSeq

text: T. Chen et. al. 2010090803

text: young leaves

text: OneKP Sample ID: PSJT


DHPO

text: Department of Biological Sciences

text: public

text: DHPO

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: DHPO

text: Eupomatia bennettii

text: Eupomatia bennettii

text: GA II

text: Soltis and Miles 2750

text: leaves

text: OneKP Sample ID: DHPO


XQWC

text: Department of Biological Sciences

text: public

text: XQWC

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: XQWC

text: Michelia maudiae

text: Michelia maudiae

text: HiSeq

text: Soltis and Miles 2954

text: young leaves

text: OneKP Sample ID: XQWC


WBOD

text: Department of Biological Sciences

text: public

text: WBOD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WBOD

text: Magnolia grandiflora

text: Magnolia grandiflora

text: GA II

text: Soltis and Miles 2764

text: leaves

text: OneKP Sample ID: WBOD


OBPL

text: Department of Biological Sciences

text: public

text: OBPL

text: nutmeg

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OBPL

text: Myristica fragrans

text: Myristica fragrans

text: HiSeq

text: Chase 33144

text: leaves

text: OneKP Sample ID: OBPL


PAWA

text: Department of Biological Sciences

text: public

text: PAWA

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: PAWA

text: Aristolochia elegans

text: Aristolochia elegans

text: GA II

text: Soltis and Miles 2754

text: leaves

text: OneKP Sample ID: PAWA


MUNP

text: Department of Biological Sciences

text: public

text: MUNP

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MUNP

text: Piper auritum

text: Piper auritum

text: HiSeq

text: Soltis and Miles 2794

text: leaves

text: OneKP Sample ID: MUNP


XSZI

text: Department of Biological Sciences

text: public

text: XSZI

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: XSZI

text: Peperomia fraseri

text: Peperomia fraseri

text: HiSeq

text: 132712 (ALTA)

text: flowers, stem, leaves

text: OneKP Sample ID: XSZI


OPDF

text: Department of Biological Sciences

text: public

text: OPDF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OPDF

text: Saururus cernuus

text: Saururus cernuus

text: HiSeq

text: Soltis and Miles 2784

text: leaves

text: OneKP Sample ID: OPDF


WPYJ

text: Department of Biological Sciences

text: public

text: WPYJ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WPYJ

text: Frankenia laevis

text: Frankenia laevis

text: HiSeq

text: JLM2013-41 (GA)

text: OneKP Sample ID: WPYJ


WZFE

text: Department of Biological Sciences

text: public

text: WZFE

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WZFE

text: Ascarina rubricaulis

text: Ascarina rubricaulis

text: HiSeq

text: OneKP Sample ID: WZFE


IWMW

text: Department of Biological Sciences

text: public

text: IWMW

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: IWMW

text: Buxus sempervirens

text: Buxus sempervirens

text: HiSeq

text: 132722 (ALTA)

text: green branch with attached leaves

text: OneKP Sample ID: IWMW


AALA

text: Department of Biological Sciences

text: public

text: AALA

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: AALA

text: Meliosma cuneifolia

text: Meliosma cuneifolia

text: HiSeq

text: Chase 33142

text: leaves

text: OneKP Sample ID: AALA


SWOH

text: Department of Biological Sciences

text: public

text: SWOH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SWOH

text: Trochodendron aralioides

text: Trochodendron aralioides

text: HiSeq

text: DWS NY 334/82A

text: young leaves and flowers

text: OneKP Sample ID: SWOH


GRRW

text: Department of Biological Sciences

text: public

text: GRRW

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GRRW

text: Grevillea robusta

text: Grevillea robusta

text: GA II

text: Soltis and Miles 2758

text: leaves

text: OneKP Sample ID: GRRW


REOF

text: Department of Biological Sciences

text: public

text: REOF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: REOF � single plant

text: Hakea prostrata

text: Hakea prostrata

text: HiSeq

text: 07984049 (PERTH)

text: young roots

text: OneKP Sample ID: REOF


OBOJ

text: Department of Biological Sciences

text: public

text: OBOJ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OBOJ � single plant

text: Hakea prostrata

text: Hakea prostrata

text: HiSeq

text: 07984049 (PERTH)

text: young leaves

text: OneKP Sample ID: OBOJ


SIIK

text: Department of Biological Sciences

text: public

text: SIIK

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SIIK � single plant

text: Hakea drupacea

text: Hakea drupacea

text: HiSeq

text: J. Clopton 212 (PERTH)

text: young shoot

text: OneKP Sample ID: SIIK


VQFW

text: Department of Biological Sciences

text: public

text: VQFW

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VQFW

text: Platanus occidentalis

text: Platanus occidentalis

text: GA II

text: Soltis and Miles 2757

text: leaves

text: OneKP Sample ID: VQFW


YHFG

text: Department of Biological Sciences

text: public

text: YHFG

text: heavenly bamboo

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: YHFG

text: Nandina domestica

text: Nandina domestica

text: HiSeq

text: Soltis and Miles 2972

text: young leaves and flower buds

text: OneKP Sample ID: YHFG


QTJY

text: Department of Biological Sciences

text: public

text: QTJY

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: QTJY

text: Euptelea pleiosperma

text: Euptelea pleiosperma

text: HiSeq

text: Chase 33135

text: leaves

text: OneKP Sample ID: QTJY


CCID

text: Department of Biological Sciences

text: public

text: CCID

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CCID

text: Akebia trifoliata

text: Akebia trifoliata

text: GA II

text: Soltis and Miles 2751

text: leaves

text: OneKP Sample ID: CCID


LVNW

text: Department of Biological Sciences

text: public

text: LVNW

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: LVNW

text: This sample was not analyzed for the 1KP publication [Nature 574, 679-685 (2019)] because it was identified as mislabeled and/or contaminated. We released the data nonetheless as some find even these data useful. More information is given at [GigaScience 8, giz126 (2019)], including estimates of which particular sequences might be problematic.

characteristic: details

text: Cocculus laurifolius

text: Cocculus laurifolius

text: HiSeq

text: Soltis and Miles 2837

text: mislabelled or contaminated

characteristic: status

text: leaves

text: OneKP Sample ID: LVNW


NMGG

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Biological Sciences

text: public

text: NMGG

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: NMGG

text: Hypecoum procumbens

text: Hypecoum procumbens

text: HiSeq

text: OneKP Sample ID: NMGG


AUGV

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Biological Sciences

text: public

text: AUGV

text: pink corydalis

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: AUGV

text: Capnoides sempervirens

text: Capnoides sempervirens

text: HiSeq

text: OneKP Sample ID: AUGV


XHKT

text: Department of Biological Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: XHKT

text: red puccoon

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: XHKT � was very young leaves and flower buds

text: Sanguinaria canadensis

text: Sanguinaria canadensis

text: HiSeq

text: JLM2013-65 (GA)

text: young shoot and flower buds

text: OneKP Sample ID: XHKT


YDEH

text: Department of Biological Sciences

text: public

characteristic: SRA accession

text: YDEH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: YDEH

text: Argemone mexicana

text: Argemone mexicana

text: GA II

text: T. Kutchan 6173585 (MO)

text: leaf

text: OneKP Sample ID: YDEH


GOQJ

text: Department of Biological Sciences

text: public

text: GOQJ

characteristic: Submitter Id

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GOQJ

text: Argemone mexicana

text: Argemone mexicana

text: GA II

text: T. Kutchan 6173585 (MO)

text: stem

text: OneKP Sample ID: GOQJ


SMZF

text: Department of Biological Sciences

text: public

text: SMZF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SMZF

characteristic: description

text: Argemone mexicana

text: Argemone mexicana

text: GA II

text: T. Kutchan 6173585 (MO)

text: root

text: OneKP Sample ID: SMZF


CCHG

text: Department of Biological Sciences

characteristic: INSDC last update

text: public

text: CCHG

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CCHG

text: Argemone mexicana

text: Argemone mexicana

text: GA II

text: T. Kutchan 6173585 (MO)

text: flower bud

text: OneKP Sample ID: CCHG


BFMT

text: Department of Biological Sciences

text: public

text: BFMT

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BFMT

text: Argemone mexicana

characteristic: organism

text: Argemone mexicana

text: GA II

text: T. Kutchan 6173585 (MO)

text: developing fruit

text: OneKP Sample ID: BFMT


RRID

text: Department of Biological Sciences

text: public

characteristic: INSDC status

text: RRID

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RRID

text: Papaver bracteatum

text: Papaver bracteatum

text: GA II

text: leaf

text: OneKP Sample ID: RRID


TMWO

text: Department of Biological Sciences

text: public

text: TMWO

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: TMWO

text: Papaver bracteatum

text: Papaver bracteatum

text: HiSeq

characteristic: sequencer

text: bulb

text: OneKP Sample ID: TMWO


ZSNV

text: Department of Biological Sciences

text: public

text: ZSNV

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ZSNV

text: Papaver bracteatum

text: Papaver bracteatum

text: GA II

text: root

text: OneKP Sample ID: ZSNV

characteristic: title


ACYX

text: Department of Biological Sciences

text: public

text: ACYX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ACYX

text: Papaver rhoeas

text: Papaver rhoeas

text: GA II

text: T. Kutchan 6173586 (MO)

text: leaf

characteristic: tissue type

text: OneKP Sample ID: ACYX


GMAM

text: Department of Biological Sciences

text: public

text: GMAM

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GMAM

text: Papaver rhoeas

text: Papaver rhoeas

text: GA II

text: T. Kutchan 6173586 (MO)

text: stem

text: OneKP Sample ID: GMAM


QZBA

text: Department of Biological Sciences

text: public

text: QZBA

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: QZBA

text: Papaver rhoeas

text: Papaver rhoeas

text: GA II

text: T. Kutchan 6173586 (MO)

text: root

text: OneKP Sample ID: QZBA


IORZ

text: Department of Biological Sciences

text: public

text: IORZ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: IORZ

text: Papaver rhoeas

text: Papaver rhoeas

text: GA II

text: T. Kutchan 6173586 (MO)

text: flower bud

text: OneKP Sample ID: IORZ


MVTX

text: Department of Biological Sciences

text: public

text: MVTX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MVTX

text: Papaver rhoeas

text: Papaver rhoeas

text: GA II

text: T. Kutchan 6173586 (MO)

text: developing fruit

text: OneKP Sample ID: MVTX


FNXH

text: Department of Biological Sciences

text: public

text: FNXH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FNXH

text: Papaver setigerum

text: Papaver setigerum

text: GA II

text: T. Kutchan 6173582 (MO)

text: leaf

text: OneKP Sample ID: FNXH


MLPX

text: Department of Biological Sciences

text: public

text: MLPX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MLPX

text: This sample was not analyzed for the 1KP publication [Nature 574, 679-685 (2019)] because it was identified as mislabeled and/or contaminated. We released the data nonetheless as some find even these data useful. More information is given at [GigaScience 8, giz126 (2019)], including estimates of which particular sequences might be problematic.

characteristic: details

text: Papaver setigerum

text: Papaver setigerum

text: GA II

text: T. Kutchan 6173582 (MO)

text: mislabelled or contaminated

text: stem

text: OneKP Sample ID: MLPX


JSVC

text: Department of Biological Sciences

text: public

text: JSVC

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: JSVC

text: Papaver setigerum

text: Papaver setigerum

text: GA II

text: T. Kutchan 6173582 (MO)

text: root

text: OneKP Sample ID: JSVC


STDO

text: Department of Biological Sciences

text: public

text: STDO

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: STDO

text: Papaver setigerum

text: Papaver setigerum

text: GA II

text: T. Kutchan 6173582 (MO)

text: flower bud

text: OneKP Sample ID: STDO


EPRK

text: Department of Biological Sciences

text: public

text: EPRK

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: EPRK

text: Papaver setigerum

text: Papaver setigerum

text: GA II

text: T. Kutchan 6173582 (MO)

text: developing fruit

text: OneKP Sample ID: EPRK


ZGQD

text: Department of Biological Sciences

text: public

text: ZGQD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ZGQD � Corydalis linstowiana Fedde

text: Corydalis linstowiana

text: Corydalis linstowiana

text: HiSeq

text: Chase 34442 K

text: leaves

text: OneKP Sample ID: ZGQD


XMVD

text: Department of Biological Sciences

text: public

text: XMVD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: XMVD

text: Chelidonium majus

text: Chelidonium majus

text: HiSeq

text: M.K. Deyholos 2016-100

text: leaf

text: OneKP Sample ID: XMVD


VGHH

text: Department of Biological Sciences

text: public

text: VGHH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VGHH

text: Hydrastis canadensis

text: Hydrastis canadensis

text: HiSeq

text: JLM2013-44 (GA)

text: young shoots and flowers

text: OneKP Sample ID: VGHH


CYVA

text: Department of Biological Sciences

text: public

text: CYVA

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CYVA

text: Cimicifuga racemosa

text: Cimicifuga racemosa

text: HiSeq

text: root and shoot

text: OneKP Sample ID: CYVA


ZUHO

text: Department of Biological Sciences

text: public

text: ZUHO

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ZUHO

text: Anemone hupehensis

text: Anemone hupehensis

text: HiSeq

text: leaf

text: OneKP Sample ID: ZUHO


GBVZ

text: Department of Biological Sciences

text: public

text: GBVZ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GBVZ � multiple plants

text: Thalictrum thalictroides

text: Thalictrum thalictroides

text: HiSeq

text: V. Di Stilio 123 (WTU)

text: floral buds

text: OneKP Sample ID: GBVZ


UPOG

text: Department of Biological Sciences

text: public

text: UPOG

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: UPOG

text: Anemone pulsatilla

text: Anemone pulsatilla

text: HiSeq

text: M.K. Deyholos 2016-101

text: leaf

text: OneKP Sample ID: UPOG


XMQO

text: Department of Biological Sciences

text: public

text: XMQO

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: XMQO

text: Gunnera manicata

text: Gunnera manicata

text: HiSeq

text: Soltis and Miles 2938

text: young leaves

text: OneKP Sample ID: XMQO


QUTB

text: Department of Biological Sciences

text: public

text: QUTB

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: QUTB

text: Aextoxicon punctatum

text: Aextoxicon punctatum

text: HiSeq

text: Chase 33145

text: leaves

text: OneKP Sample ID: QUTB


HAEU

text: Department of Biological Sciences

text: public

text: HAEU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: HAEU

text: Berberidopsis beckleri

text: Berberidopsis beckleri

text: HiSeq

text: Chase 33137

text: leaves

text: OneKP Sample ID: HAEU


EHNF

text: Department of Biological Sciences

text: public

text: EHNF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: EHNF

text: Dillenia indica

text: Dillenia indica

text: GA II

text: Soltis and Miles 2768

text: leaves

text: OneKP Sample ID: EHNF


OKEF

text: Department of Biological Sciences

text: public

text: OKEF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OKEF

text: Hibbertia grossulariifolia

text: Hibbertia grossulariifolia

text: HiSeq

text: mislabelled or contaminated

characteristic: status

text: OneKP Sample ID: OKEF


BJKT

characteristic: ENA-CHECKLIST

text: Department of Biological Sciences

text: public

text: BJKT

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BJKT

text: Delosperma echinatum

text: Delosperma echinatum

text: HiSeq

text: Soltis and Miles 2832

text: leaves and young flowers

text: OneKP Sample ID: BJKT


GJNX

characteristic: ENA-FIRST-PUBLIC

text: Department of Biological Sciences

text: public

text: GJNX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GJNX

text: Cypselea humifusa

text: Cypselea humifusa

text: HiSeq

text: mature leaf

text: OneKP Sample ID: GJNX


HZTS

characteristic: ENA-LAST-UPDATE

text: Department of Biological Sciences

text: public

text: HZTS

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: HZTS

text: Sesuvium portulacastrum

text: Sesuvium portulacastrum

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: HZTS


OPZX

characteristic: External Id

text: Department of Biological Sciences

text: public

text: OPZX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OPZX

text: Sesuvium verrucosum

text: Sesuvium verrucosum

text: HiSeq

text: mature leaf

text: OneKP Sample ID: OPZX


ZJDK

text: Department of Biological Sciences

characteristic: INSDC center name

text: public

text: ZJDK

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ZJDK

text: Sesuvium verrucosum

text: Sesuvium verrucosum

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: ZJDK


QNIK

text: Department of Biological Sciences

characteristic: INSDC first public

text: public

text: QNIK

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: QNIK

text: Trianthema portulacastrum

text: Trianthema portulacastrum

text: HiSeq

text: mature leaf

text: OneKP Sample ID: QNIK


TNVE

text: Department of Biological Sciences

text: public

characteristic: SRA accession

text: TNVE

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: TNVE

text: Trianthema portulacastrum

text: Trianthema portulacastrum

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: TNVE


BERS

text: Department of Biological Sciences

text: public

text: BERS

characteristic: Submitter Id

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BERS

text: Zaleya pentandra

text: Zaleya pentandra

text: HiSeq

text: mature leaf

text: OneKP Sample ID: BERS


VKOE

text: Department of Biological Sciences

text: public

text: VKOE

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VKOE

characteristic: description

text: Aerva lanata

text: Aerva lanata

text: HiSeq

text: mature leaf

text: OneKP Sample ID: VKOE


EMIG

text: Department of Biological Sciences

characteristic: INSDC last update

text: public

text: EMIG

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: EMIG

text: Aerva lanata

text: Aerva lanata

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: EMIG


MEAH

text: Department of Biological Sciences

text: public

text: MEAH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MEAH

text: Aerva persica

characteristic: organism

text: Aerva persica

text: HiSeq

text: mature leaf

text: OneKP Sample ID: MEAH


GBCQ

text: Department of Biological Sciences

text: public

characteristic: INSDC status

text: GBCQ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GBCQ

text: Aerva persica

text: Aerva persica

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: GBCQ


JBGU

text: Department of Biological Sciences

text: public

text: JBGU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: JBGU � multiple plants

text: This sample was not analyzed for the 1KP publication [Nature 574, 679-685 (2019)] because it was identified as mislabeled and/or contaminated. We released the data nonetheless as some find even these data useful. More information is given at [GigaScience 8, giz126 (2019)], including estimates of which particular sequences might be problematic.

text: Amaranthus palmeri

text: Amaranthus palmeri

text: HiSeq

characteristic: sequencer

text: Chance

text: mislabelled or contaminated

text: leaves and stems

text: OneKP Sample ID: JBGU


XSSD

text: Department of Biological Sciences

text: public

text: XSSD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: XSSD

text: Amaranthus tricolor

text: Amaranthus tricolor

text: HiSeq

text: 132716 (ALTA)

text: young leaves, stem, and flowers

text: OneKP Sample ID: XSSD

characteristic: title


WMLW

text: Department of Biological Sciences

text: public

text: WMLW

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WMLW

text: Amaranthus retroflexus

text: Amaranthus retroflexus

text: HiSeq

text: mature leaf

characteristic: tissue type

text: OneKP Sample ID: WMLW


CUTE

text: Department of Biological Sciences

text: public

text: CUTE

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CUTE

text: Blutaparon vermiculare

text: Blutaparon vermiculare

text: HiSeq

text: mature leaf

text: OneKP Sample ID: CUTE


BDIW

text: Department of Biological Sciences

text: public

text: BDIW

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BDIW

text: Atriplex hortensis

text: Atriplex hortensis

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: BDIW


AKTA

text: Department of Biological Sciences

text: public

text: AKTA

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: AKTA

text: Atriplex hortensis

text: Atriplex hortensis

text: HiSeq

text: mature leaf

text: OneKP Sample ID: AKTA


EPVF

text: Department of Biological Sciences

text: public

text: EPVF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: EPVF

text: Atriplex prostrata

text: Atriplex prostrata

text: HiSeq

text: mature leaf

text: OneKP Sample ID: EPVF


MUCT

text: Department of Biological Sciences

text: public

text: MUCT

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MUCT

text: Atriplex prostrata

text: Atriplex prostrata

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: MUCT


PDXY

text: Department of Biological Sciences

text: public

text: PDXY

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: PDXY

text: Atriplex rosea

text: Atriplex rosea

text: HiSeq

text: mature leaf

text: OneKP Sample ID: PDXY


LBZM

text: Department of Biological Sciences

text: public

text: LBZM

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: LBZM

text: Atriplex rosea

text: Atriplex rosea

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: LBZM


SMMC

text: Department of Biological Sciences

text: public

text: SMMC

text: quinoa

characteristic: common name

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SMMC � single plant; Chenopodium quinoa Willd.

text: Chenopodium quinoa

text: Chenopodium quinoa

text: HiSeq

text: Ames 13220 (UWA)

text: young leaves and floral buds

text: OneKP Sample ID: SMMC


KTQI

text: Department of Biological Sciences

text: public

text: KTQI

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: KTQI

text: Alternanthera brasiliana

text: Alternanthera brasiliana

text: HiSeq

text: mature leaf

text: OneKP Sample ID: KTQI


ENCD

text: Department of Biological Sciences

text: public

text: ENCD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ENCD

text: Alternanthera brasiliana

text: Alternanthera brasiliana

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: ENCD


WGUG

text: Department of Biological Sciences

text: public

text: WGUG

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WGUG

text: Alternanthera caracasana

text: Alternanthera caracasana

text: HiSeq

text: mature leaf

text: OneKP Sample ID: WGUG


VUIT

text: Department of Biological Sciences

text: public

text: VUIT

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VUIT

text: Alternanthera caracasana

text: Alternanthera caracasana

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: VUIT


LUNL

text: Department of Biological Sciences

text: public

text: LUNL

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: LUNL

text: Alternanthera sessilis

text: Alternanthera sessilis

text: HiSeq

text: mature leaf

text: OneKP Sample ID: LUNL


OYST

text: Department of Biological Sciences

text: public

text: OYST

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OYST

text: Alternanthera sessilis

text: Alternanthera sessilis

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: OYST


DEMH

text: Department of Biological Sciences

text: public

text: DEMH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: DEMH

text: Alternanthera tenella

text: Alternanthera tenella

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: DEMH


DBCE

text: Department of Biological Sciences

text: public

text: DBCE

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: DBCE

text: Alternanthera tenella

text: Alternanthera tenella

text: HiSeq

text: mature leaf

text: OneKP Sample ID: DBCE


FVXD

text: Department of Biological Sciences

text: public

text: FVXD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FVXD � Synonym: Beta vulgaris ssp. maritima

text: Beta maritima

text: Beta maritima

text: HiSeq

text: Cheeseman UIUC003

text: leaves

text: OneKP Sample ID: FVXD


HSXO

text: Department of Biological Sciences

text: public

text: HSXO

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: HSXO � Ancistrocladus tectorius (Lour.) Merr.

text: Ancistrocladus tectorius

text: Ancistrocladus tectorius

text: HiSeq

text: T. Chen et. al. 2010090809

text: young leaves

text: OneKP Sample ID: HSXO


CTYH

text: Department of Biological Sciences

text: public

text: CTYH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CTYH

text: Basella alba

text: Basella alba

text: HiSeq

text: Chase 33139

text: leaves

text: OneKP Sample ID: CTYH


JLOV

text: Department of Biological Sciences

text: public

text: JLOV

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: JLOV

text: Pereskia aculeata

text: Pereskia aculeata

text: HiSeq

text: Soltis and Miles 2831

text: young leaves

text: OneKP Sample ID: JLOV


CPKP

text: Department of Biological Sciences

text: public

text: CPKP

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CPKP

text: Lophophora williamsii

text: Lophophora williamsii

text: HiSeq

text: M.K. Deyholos 2016-103

text: whole plant (no flower)

text: OneKP Sample ID: CPKP


QAIR

text: Department of Biological Sciences

text: public

text: QAIR

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: QAIR

text: Opuntia polyacantha

text: Opuntia polyacantha

text: HiSeq

text: 132751 (ALTA)

text: paddle

text: OneKP Sample ID: QAIR


SKNL

text: Department of Biological Sciences

text: public

text: SKNL

text: common soapwort

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SKNL

text: Saponaria officinalis

text: Saponaria officinalis

text: HiSeq

text: 132760 (ALTA)

text: flower, fruit, stem, leaves

text: OneKP Sample ID: SKNL


RXEN

text: Department of Biological Sciences

text: public

text: RXEN

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RXEN

text: Polycarpaea repens

text: Polycarpaea repens

text: HiSeq

text: green leaves and shoots

text: OneKP Sample ID: RXEN


TJES

text: Department of Biological Sciences

text: public

text: TJES

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: TJES

text: Spergularia media

text: Spergularia media

text: HiSeq

text: leaves

text: OneKP Sample ID: TJES


OLES

text: Department of Biological Sciences

text: public

text: OLES

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OLES � single plant; Presumably the most basal part of the lineage, along with S. verticillata.

text: Schiedea membranacea

text: Schiedea membranacea

text: HiSeq

text: Weller and Sakai 864 192-30

text: flower buds

text: OneKP Sample ID: OLES


SHEZ

text: Department of Biological Sciences

text: public

text: SHEZ

text: clove pink

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SHEZ

text: Dianthus caryophyllus

text: Dianthus caryophyllus

text: HiSeq

text: Soltis and Miles 2849

text: leaves and young flowers

text: OneKP Sample ID: SHEZ


FZQN

text: Department of Biological Sciences

text: public

text: FZQN

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FZQN

text: Silene latifolia

text: Silene latifolia

text: HiSeq

text: J.R. McDill 2011-8

text: flowers, leaves, stem

text: OneKP Sample ID: FZQN


RNBN

text: Department of Biological Sciences

text: public

text: RNBN

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RNBN

text: Mollugo cerviana

text: Mollugo cerviana

text: HiSeq

text: mature leaf

text: OneKP Sample ID: RNBN


CUVY

text: Department of Biological Sciences

text: public

text: CUVY

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CUVY

text: Mollugo nudicaulis

text: Mollugo nudicaulis

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: CUVY


UNSW

text: Department of Biological Sciences

text: public

text: UNSW

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: UNSW

text: Mollugo nudicaulis

text: Mollugo nudicaulis

text: HiSeq

text: mature leaf

text: OneKP Sample ID: UNSW


HURS

text: Department of Biological Sciences

text: public

text: HURS

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: HURS

text: Mollugo pentaphylla

text: Mollugo pentaphylla

text: HiSeq

text: mature leaf

text: OneKP Sample ID: HURS


QASA

text: Department of Biological Sciences

text: public

text: QASA

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: QASA

text: Mollugo verticillata

text: Mollugo verticillata

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: QASA


OFWX

text: Department of Biological Sciences

text: public

text: OFWX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OFWX

text: Mollugo verticillata

text: Mollugo verticillata

text: HiSeq

text: mature leaf

text: OneKP Sample ID: OFWX


WQUF

text: Department of Biological Sciences

text: public

text: WQUF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WQUF

text: Nepenthes alata

text: Nepenthes alata

text: GA II

text: Miles 58

text: lower leaf

text: OneKP Sample ID: WQUF


JAFJ

text: Department of Biological Sciences

text: public

text: JAFJ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: JAFJ

text: Bougainvillea spectabilis

text: Bougainvillea spectabilis

text: GA II

text: Soltis and Miles 2777

text: leaves

text: OneKP Sample ID: JAFJ


DVXD

text: Department of Biological Sciences

text: public

text: DVXD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: DVXD

text: Allionia incarnata

text: Allionia incarnata

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: DVXD


EGOS

text: Department of Biological Sciences

text: public

text: EGOS

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: EGOS

text: Allionia incarnata

text: Allionia incarnata

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: EGOS


WHHY

text: Department of Biological Sciences

text: public

text: WHHY

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WHHY

text: Boerhavia coccinea

text: Boerhavia coccinea

text: HiSeq

text: mature leaf

text: OneKP Sample ID: WHHY


MBWM

text: Department of Biological Sciences

text: public

text: MBWM

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MBWM

text: Boerhavia coccinea

text: Boerhavia coccinea

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: MBWM


HUGU

text: Department of Biological Sciences

text: public

text: HUGU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: HUGU

text: Boerhavia burbidgeana

text: Boerhavia burbidgeana

text: HiSeq

text: mature leaf

text: OneKP Sample ID: HUGU


GDYP

text: Department of Biological Sciences

text: public

text: GDYP

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GDYP

text: Boerhavia burbidgeana

text: Boerhavia burbidgeana

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: GDYP


GQAV

text: Department of Biological Sciences

text: public

text: GQAV

text: garden four-o'clock

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GQAV

text: Mirabilis jalapa

text: Mirabilis jalapa

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: GQAV


DZRA

text: Department of Biological Sciences

text: public

text: DZRA

text: garden four-o'clock

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: DZRA

text: Mirabilis jalapa

text: Mirabilis jalapa

text: HiSeq

text: mature leaf

text: OneKP Sample ID: DZRA


RUUB

text: Department of Biological Sciences

text: public

text: RUUB

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RUUB � Physena madagascariensis Thouars ex Tul.

text: Physena madagascariensis

text: Physena madagascariensis

text: HiSeq

text: Chase 33153 K

text: leaves

text: OneKP Sample ID: RUUB


BKQU

text: Department of Biological Sciences

text: public

text: BKQU

text: American pokeweed

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BKQU

text: Phytolacca americana

text: Phytolacca americana

text: GA II

text: Soltis and Miles 2759

text: leaves and young flowers

text: OneKP Sample ID: BKQU


AZBL

text: Department of Biological Sciences

text: public

text: AZBL

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: AZBL

text: Petiveria alliacea

text: Petiveria alliacea

text: HiSeq

text: Soltis and Miles 2939

text: young leaves

text: OneKP Sample ID: AZBL


MRKX

text: Department of Biological Sciences

text: public

text: MRKX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MRKX

text: Phytolacca bogotensis

text: Phytolacca bogotensis

text: HiSeq

text: 132753 (ALTA)

text: flowers, developing fruits, leaves, stem

text: OneKP Sample ID: MRKX


YNFJ

text: Department of Biological Sciences

text: public

text: YNFJ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: YNFJ

text: Microtea debilis

text: Microtea debilis

text: HiSeq

text: Soltis and Miles 2997

text: young leaves

text: OneKP Sample ID: YNFJ


SFKQ

text: Department of Biological Sciences

text: public

text: SFKQ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SFKQ

text: Hilleria latifolia

text: Hilleria latifolia

text: HiSeq

text: Soltis and Miles 2976

text: young leaves and flower buds

text: OneKP Sample ID: SFKQ


CGGO

text: Department of Biological Sciences

text: public

text: CGGO

text: Cape leadwort

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CGGO

text: Plumbago auriculata

text: Plumbago auriculata

text: HiSeq

text: OneKP Sample ID: CGGO


WOBD

text: Department of Biological Sciences

text: public

text: WOBD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WOBD

text: Limonium spectabile

text: Limonium spectabile

text: HiSeq

text: OneKP Sample ID: WOBD


FYSJ

text: Department of Biological Sciences

text: public

text: FYSJ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FYSJ � multiple plants

text: Polygonum convolvulus

text: Polygonum convolvulus

text: GA II

text: Zuidof-Lacombe AB, Wild buckwheat#1

text: young shoot

text: OneKP Sample ID: FYSJ


CZJT

text: Department of Biological Sciences

text: public

text: CZJT

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CZJT � multiple plants

text: Portulaca oleracea

text: Portulaca oleracea

text: GA II

text: Zuidof-Lacombe AB, Purslane#1

text: young shoot

text: OneKP Sample ID: CZJT


QMUN

text: Department of Biological Sciences

text: public

text: QMUN

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: QMUN

text: Portulaca amilis

text: Portulaca amilis

text: HiSeq

text: mature leaf

text: OneKP Sample ID: QMUN


LFQH

text: Department of Biological Sciences

text: public

text: LFQH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: LFQH

text: Portulaca amilis

text: Portulaca amilis

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: LFQH


VPCP

text: Department of Biological Sciences

text: public

text: VPCP

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VPCP

text: Portulaca cryptopetala

text: Portulaca cryptopetala

text: HiSeq

text: mature leaf

text: OneKP Sample ID: VPCP


TMMR

text: Department of Biological Sciences

text: public

text: TMMR

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: TMMR

text: Portulaca cryptopetala

text: Portulaca cryptopetala

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: TMMR


CPLT

text: Department of Biological Sciences

text: public

text: CPLT

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CPLT

text: Portulaca grandiflora

text: Portulaca grandiflora

text: HiSeq

text: mature leaf

text: OneKP Sample ID: CPLT


BYNZ

text: Department of Biological Sciences

text: public

text: BYNZ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BYNZ

text: Portulaca umbraticola

text: Portulaca umbraticola

text: HiSeq

text: mature leaf

text: OneKP Sample ID: BYNZ


UQCB

text: Department of Biological Sciences

text: public

text: UQCB

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: UQCB

text: Portulaca molokiniensis

text: Portulaca molokiniensis

text: HiSeq

text: mature leaf

text: OneKP Sample ID: UQCB


TRLB

text: Department of Biological Sciences

text: public

text: TRLB

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: TRLB

text: Portulaca oleracea

text: Portulaca oleracea

text: HiSeq

text: mature leaf

text: OneKP Sample ID: TRLB


IWIS

text: Department of Biological Sciences

text: public

text: IWIS

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: IWIS

text: Portulaca pilosa

text: Portulaca pilosa

text: HiSeq

text: juvenile leaf

text: OneKP Sample ID: IWIS


GCYL

text: Department of Biological Sciences

text: public

text: GCYL

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GCYL

text: Portulaca suffrutescens

text: Portulaca suffrutescens

text: HiSeq

text: mature leaf

text: OneKP Sample ID: GCYL


KDCH

text: Department of Biological Sciences

text: public

text: KDCH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: KDCH

text: Portulaca umbraticola

text: Portulaca umbraticola

text: HiSeq

text: mature leaf

text: OneKP Sample ID: KDCH


GIWN

text: Department of Biological Sciences

text: public

text: GIWN

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: GIWN

text: Sarcobatus vermiculatus

text: Sarcobatus vermiculatus

text: HiSeq

text: OneKP Sample ID: GIWN


CVDF

text: Department of Biological Sciences

text: public

text: CVDF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CVDF

text: Simmondsia chinensis

text: Simmondsia chinensis

text: HiSeq

text: OneKP Sample ID: CVDF


HTDC

text: Department of Biological Sciences

text: public

text: HTDC

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: HTDC � Tamarix chinensis Lour.

text: Tamarix chinensis

text: Tamarix chinensis

text: HiSeq

text: Chase 33138

text: leaves

text: OneKP Sample ID: HTDC


STKY

text: Department of Biological Sciences

text: public

text: STKY

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: STKY

text: Balanophora fungosa

text: Balanophora fungosa

text: HiSeq

text: OneKP Sample ID: STKY


XKPS

text: Department of Biological Sciences

text: public

text: XKPS

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: XKPS

text: Ximenia americana

text: Ximenia americana

text: HiSeq

text: Soltis and Miles 2949

text: young leaves and shoots

text: OneKP Sample ID: XKPS


VGVI

text: Department of Biological Sciences

text: public

text: VGVI

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VGVI

text: Dendropemon caribaeus

text: Dendropemon caribaeus

text: HiSeq

text: CWD 2012.10

text: seedlings / whole plant

text: OneKP Sample ID: VGVI


RSPO

text: Department of Biological Sciences

text: public

text: RSPO

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RSPO

text: Santalum acuminatum

text: Santalum acuminatum

text: HiSeq

text: OneKP Sample ID: RSPO


XGFU

text: Department of Biological Sciences

text: public

text: XGFU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: XGFU

text: Exocarpos cupressiformis

text: Exocarpos cupressiformis

text: HiSeq

text: OneKP Sample ID: XGFU


QKMG

text: Department of Biological Sciences

text: public

text: QKMG

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: QKMG

text: Phoradendron serotinum

text: Phoradendron serotinum

text: HiSeq

text: CWD+JRM 2012.4

text: leaves, stem, fruit

text: OneKP Sample ID: QKMG


DMKC

text: Department of Biological Sciences

text: public

text: DMKC

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: DMKC

text: Hamamelis virginiana

text: Hamamelis virginiana

text: HiSeq

text: Soltis and Miles 2792

text: leaves

text: OneKP Sample ID: DMKC


YHXT

text: Department of Biological Sciences

text: public

text: YHXT

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: YHXT

text: Hamamelis virginiana

text: Hamamelis virginiana

text: HiSeq

text: leaves

text: OneKP Sample ID: YHXT


HQRJ

text: Department of Biological Sciences

text: public

text: HQRJ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: HQRJ

text: Loropetalum chinense

text: Loropetalum chinense

text: HiSeq

text: Soltis and Miles 2858

text: leaves

text: OneKP Sample ID: HQRJ


OMDH

text: Department of Biological Sciences

text: public

text: OMDH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OMDH � Syn. Loropetalum chinense (R.Br.) Oliv. forma rubrum H.T.Chang 'Blush' K (sterile specimen) LivingCollection Acc.No. 1994-909

text: Loropetalum chinense

text: Loropetalum chinense

text: HiSeq

text: Chase 34458 K

text: leaves

text: OneKP Sample ID: OMDH


FWBF

text: Department of Biological Sciences

text: public

text: FWBF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FWBF � Alangium chinense (Lour.) Harms

text: Alangium chinense

text: Alangium chinense

text: HiSeq

text: Chase 34454 K

text: leaves

text: OneKP Sample ID: FWBF


LMVB

text: Department of Biological Sciences

text: public

text: LMVB

text: sweet gum

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: LMVB

text: Liquidambar styraciflua

text: Liquidambar styraciflua

text: HiSeq

text: Soltis and Miles 2850

text: leaves

text: OneKP Sample ID: LMVB


NUZN

text: Department of Biological Sciences

text: public

text: NUZN

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: NUZN

text: Cercidiphyllum japonicum

text: Cercidiphyllum japonicum

text: HiSeq

text: DWS NY 65/100A

text: young leaves

text: OneKP Sample ID: NUZN


ZJUL

text: Department of Biological Sciences

text: public

text: ZJUL

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ZJUL

text: Rhodiola rosea

text: Rhodiola rosea

text: HiSeq

text: 132756 (ALTA)

text: flowers, stem, leaves

text: OneKP Sample ID: ZJUL


KWGC

text: Department of Biological Sciences

text: public

text: KWGC

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: KWGC

text: Crassula perforata

text: Crassula perforata

text: HiSeq

text: Soltis and Miles 2809

text: young leaves

text: OneKP Sample ID: KWGC


FYTP

text: Department of Biological Sciences

text: public

text: FYTP

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FYTP

text: Daphniphyllum macropodum

text: Daphniphyllum macropodum

text: HiSeq

text: Chase 33136

text: vegetative shoot meristems

text: OneKP Sample ID: FYTP


IUSR

text: Department of Biological Sciences

text: public

text: IUSR

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: IUSR

text: Myriophyllum aquaticum

text: Myriophyllum aquaticum

text: HiSeq

text: Soltis and Miles 2788

text: leaves

text: OneKP Sample ID: IUSR


TOKV

text: Department of Biological Sciences

text: public

text: TOKV

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: TOKV � Aphanopetalum resinosum Endl.

text: Aphanopetalum resinosum

text: Aphanopetalum resinosum

text: HiSeq

text: Chase 34479 K

text: leaves

text: OneKP Sample ID: TOKV


UWFU

text: Department of Biological Sciences

text: public

text: UWFU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: UWFU

text: Itea virginica

text: Itea virginica

text: GA II

text: Soltis and Miles 2760

text: leaves

text: OneKP Sample ID: UWFU


HTIP

text: Department of Biological Sciences

text: public

text: HTIP

text: Chinese peony

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: HTIP

text: Paeonia lactiflora

text: Paeonia lactiflora

text: HiSeq

text: Chase 33134

text: flower buds

text: OneKP Sample ID: HTIP


FCBJ

text: Department of Biological Sciences

text: public

text: FCBJ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FCBJ

text: Saxifraga stolonifera

text: Saxifraga stolonifera

text: HiSeq

text: Soltis and Miles 2795

text: leaves

text: OneKP Sample ID: FCBJ


ERIA

text: Department of Biological Sciences

text: public

text: ERIA

text: coralbells

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ERIA

text: Heuchera sanguinea

text: Heuchera sanguinea

text: HiSeq

text: Soltis and Miles 2906

text: young leaves

text: OneKP Sample ID: ERIA


UHBY

text: Department of Biological Sciences

text: public

text: UHBY

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: UHBY

text: Oresitrophe rupifraga

text: Oresitrophe rupifraga

text: HiSeq

text: Soltis and Miles 2918

text: young leaves

text: OneKP Sample ID: UHBY


DAYQ

text: Department of Biological Sciences

text: public

text: DAYQ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: DAYQ

text: Mitella pentandra

text: Mitella pentandra

text: HiSeq

text: OneKP Sample ID: DAYQ


OOVX

text: Department of Biological Sciences

text: public

text: OOVX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OOVX

text: Boykinia jamesii

text: Boykinia jamesii

text: HiSeq

text: Chase 38782

text: young leaves

text: OneKP Sample ID: OOVX


CKKR

text: Department of Biological Sciences

text: public

text: CKKR

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CKKR

text: Astilbe chinensis

text: Astilbe chinensis

text: HiSeq

text: Chase 38784

text: young leaves

text: OneKP Sample ID: CKKR


SLOI

text: Department of Biological Sciences

text: public

text: SLOI

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SLOI

text: Tiarella polyphylla

text: Tiarella polyphylla

text: HiSeq

text: Chase 38786

text: young leaves

text: OneKP Sample ID: SLOI


YKFU

text: Department of Biological Sciences

text: public

text: YKFU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: YKFU

text: Peltoboykinia watanabei

text: Peltoboykinia watanabei

text: HiSeq

text: Chase 38787

text: young leaves

text: OneKP Sample ID: YKFU


CTSS

text: Department of Biological Sciences

text: public

text: CTSS

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: CTSS

text: Tellima breviflora

text: Tellima breviflora

text: HiSeq

text: Chase 38789

text: young leaves

text: OneKP Sample ID: CTSS


BGZG

text: Department of Biological Sciences

text: public

text: BGZG

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BGZG � Cissus quadrangularis L.

text: Cissus quadrangularis

text: Cissus quadrangularis

text: HiSeq

text: Chase 34459 K

text: leaves

text: OneKP Sample ID: BGZG


SZPD

text: Department of Biological Sciences

text: public

text: SZPD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SZPD

text: Tetrastigma voinierianum

text: Tetrastigma voinierianum

text: HiSeq

text: Soltis and Miles 2853

text: young leaves

text: OneKP Sample ID: SZPD


BBBA

text: Department of Biological Sciences

text: public

text: BBBA

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BBBA � Tetrastigma obtectum (Wall. ex M.A.Lawson) Planch. ex Franch.

text: Tetrastigma obtectum

text: Tetrastigma obtectum

text: HiSeq

text: Chase 34457 K

text: leaves

text: OneKP Sample ID: BBBA


VYGG

text: Department of Biological Sciences

text: public

text: VYGG

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VYGG

text: Stachyurus praecox

text: Stachyurus praecox

text: HiSeq

text: DWS NY 487/2003B

text: young leaves

text: OneKP Sample ID: VYGG


PTLU

text: Department of Biological Sciences

text: public

text: PTLU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: PTLU

text: Staphylea trifolia

text: Staphylea trifolia

text: HiSeq

text: JLM2013-66 (GA)

text: vegetative shoots

text: OneKP Sample ID: PTLU


VKGP

text: Department of Biological Sciences

text: public

text: VKGP

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VKGP

text: Geranium carolinianum

text: Geranium carolinianum

text: HiSeq

text: Soltis and Miles 2919

text: young leaves and some flower buds

text: OneKP Sample ID: VKGP


YGCX

text: Department of Biological Sciences

text: public

text: YGCX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: YGCX

text: Geranium maculatum

text: Geranium maculatum

text: HiSeq

text: OneKP Sample ID: YGCX


HDWF

text: Department of Biological Sciences

text: public

text: HDWF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: HDWF

text: Francoa appendiculata

text: Francoa appendiculata

text: HiSeq

text: Chase 33147

text: leaves

text: OneKP Sample ID: HDWF


FONV

text: Department of Biological Sciences

text: public

text: FONV

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FONV

text: Greyia sutherlandii

text: Greyia sutherlandii

text: HiSeq

text: Soltis and Miles 2844

text: leaves

text: OneKP Sample ID: FONV


AJJE

text: Department of Biological Sciences

text: public

text: AJJE

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: AJJE � Terminalia neotaliala Capuron, Syn. T. mantaly H.Perrier

text: Terminalia neotaliala

text: Terminalia neotaliala

text: HiSeq

text: Chase 34481 K

text: leaves

text: OneKP Sample ID: AJJE


NIJU

text: Department of Biological Sciences

text: public

text: NIJU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: NIJU

text: This sample was not analyzed for the 1KP publication [Nature 574, 679-685 (2019)] because it was identified as mislabeled and/or contaminated. We released the data nonetheless as some find even these data useful. More information is given at [GigaScience 8, giz126 (2019)], including estimates of which particular sequences might be problematic.

characteristic: details

text: Heteropyxis natalensis

text: Heteropyxis natalensis

text: GA II

text: T. McLellan (J)

text: mislabelled or contaminated

characteristic: status

text: leaves

text: OneKP Sample ID: NIJU


RJNQ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Biological Sciences

text: public

text: RJNQ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RJNQ

text: Lagerstroemia indica

text: Lagerstroemia indica

text: HiSeq

text: Soltis and Miles 2971

text: young leaves

text: OneKP Sample ID: RJNQ


JROW

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Biological Sciences

text: public

text: JROW

text: pomegranate

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: JROW

text: Punica granatum

text: Punica granatum

text: HiSeq

text: Soltis and Miles 2973

text: young leaves

text: OneKP Sample ID: JROW


QEBC

text: Department of Biological Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: QEBC

text: pomegranate

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: QEBC

text: Punica granatum

text: Punica granatum

text: HiSeq

text: Soltis and Miles 2973

text: young leaves

text: OneKP Sample ID: QEBC


YMUO

text: Department of Biological Sciences

text: public

characteristic: SRA accession

text: YMUO

characteristic: Submitter Id

text: pomegranate

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: YMUO

text: Punica granatum

text: Punica granatum

text: HiSeq

text: M.K. Deyholos 2016-104

text: developing seeds

text: OneKP Sample ID: YMUO


VUGF

text: Department of Biological Sciences

characteristic: INSDC last update

text: public

text: VUGF

text: pomegranate

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VUGF

characteristic: description

text: Punica granatum

text: Punica granatum

text: HiSeq

text: M.K. Deyholos 2016-105

text: developing seeds

text: OneKP Sample ID: VUGF


SWGX

text: Department of Biological Sciences

text: public

characteristic: INSDC status

text: SWGX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: SWGX

text: Tetrazygia bicolor

characteristic: organism

text: Tetrazygia bicolor

text: GA II

text: Soltis and Miles 2766

text: leaves

text: OneKP Sample ID: SWGX


WWQZ

text: Department of Biological Sciences

text: public

text: WWQZ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: WWQZ

text: Medinilla magnifica

text: Medinilla magnifica

text: HiSeq

characteristic: sequencer

text: Soltis and Miles 2948

text: young leaves

text: OneKP Sample ID: WWQZ

characteristic: title


FGDU

text: Department of Biological Sciences

text: public

text: FGDU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FGDU � Syzygium paniculatum Gaertn.

text: Syzygium paniculatum

text: Syzygium paniculatum

text: HiSeq

text: Chase 34478 K

text: leaves and flower buds

characteristic: tissue type

text: OneKP Sample ID: FGDU


NEBM

text: Department of Biological Sciences

text: public

text: NEBM

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: NEBM

text: Syzygium micranthum

text: Syzygium micranthum

text: HiSeq

text: JLM2013-70 (GA)

text: OneKP Sample ID: NEBM


AYMT

text: Department of Biological Sciences

text: public

text: AYMT

text: white ironbark

characteristic: common name

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: AYMT

text: Eucalyptus leucoxylon

text: Eucalyptus leucoxylon

text: HiSeq

text: OneKP Sample ID: AYMT


JLLY

text: Department of Biological Sciences

text: public

text: JLLY

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: JLLY

text: Melaleuca quinquenervia

text: Melaleuca quinquenervia

text: HiSeq

text: Soltis and Miles 2824

text: young leaves

text: OneKP Sample ID: JLLY


FEDW

text: Department of Biological Sciences

text: public

text: FEDW

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FEDW � originally recorded as Epilobium sp.

text: Chamerion angustifolium

text: Chamerion angustifolium

text: HiSeq

text: 132727 (ALTA)

text: leaf, stem, flowers

text: OneKP Sample ID: FEDW


ZHMB

text: Department of Biological Sciences

text: public

text: ZHMB

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ZHMB

text: Krameria lanceolata

text: Krameria lanceolata

text: HiSeq

text: Soltis and Miles 2991

text: young leaves, flower buds

text: OneKP Sample ID: ZHMB


IHCQ

text: Department of Biological Sciences

text: public

text: IHCQ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: IHCQ

text: Crossopetalum rhacoma

text: Crossopetalum rhacoma

text: HiSeq

text: Soltis and Miles 2947

text: young leaves, a few flowers

text: OneKP Sample ID: IHCQ


AXAF

text: Department of Biological Sciences

text: public

text: AXAF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: AXAF � Thladiantha villosula Cogn.

text: Thladiantha villosula

text: Thladiantha villosula

text: HiSeq

text: Chase 34473 K

text: leaves

text: OneKP Sample ID: AXAF


NNGU

text: Department of Biological Sciences

text: public

text: NNGU

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: NNGU � Coriaria nepalensis Wall.

text: Coriaria nepalensis

text: Coriaria nepalensis

text: HiSeq

text: Chase 33161 K

text: leaves

text: OneKP Sample ID: NNGU


RMWJ

text: Department of Biological Sciences

text: public

text: RMWJ

text: Japanese wisteria

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RMWJ � multiple plants

text: Wisteria floribunda

text: Wisteria floribunda

text: HiSeq

text: Stewart and Burris

text: flowers, leaves, stems

text: OneKP Sample ID: RMWJ


TVSH

text: Department of Biological Sciences

text: public

text: TVSH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: TVSH � single plant; Bituminaria bituminosa (L.) C.H. Stirton

text: Bituminaria bituminosa

text: Bituminaria bituminosa

text: HiSeq

text: Breeding line 51 (UWA)

text: young leaves and floral buds

text: OneKP Sample ID: TVSH


JTQQ

text: Department of Biological Sciences

text: public

text: JTQQ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: JTQQ

text: Glycyrrhiza lepidota

text: Glycyrrhiza lepidota

text: HiSeq

text: 132733 (ALTA)

text: shoot (no flower) and root

text: OneKP Sample ID: JTQQ


VLNB

text: Department of Biological Sciences

text: public

text: VLNB

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VLNB

text: Gompholobium polymorphum

text: Gompholobium polymorphum

text: HiSeq

text: A. Smithson 1 (Perth)

text: leaves and buds

text: OneKP Sample ID: VLNB


ZUQW

text: Department of Biological Sciences

text: public

text: ZUQW

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ZUQW

text: Glycine soja

text: Glycine soja

text: HiSeq

text: M.K. Deyholos 2016-127

text: root

text: OneKP Sample ID: ZUQW


OAQS

text: Department of Biological Sciences

text: public

text: OAQS

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: OAQS

text: Glycine soja

text: Glycine soja

text: HiSeq

text: M.K. Deyholos 2016-127

text: root + NaCl

text: OneKP Sample ID: OAQS


LXGM

text: Department of Biological Sciences

text: public

text: LXGM

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: LXGM

text: Glycine soja

text: Glycine soja

text: HiSeq

text: M.K. Deyholos 2016-127

text: root + NaHCO3

text: OneKP Sample ID: LXGM


RIDD

text: Department of Biological Sciences

text: public

text: RIDD

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RIDD � tissue: root (3cm root tip) / treatment: 50 mM NaHCO3 (saline-alkali stress)

text: Glycine soja

text: Glycine soja

text: HiSeq

text: M.K. Deyholos 2016-127

text: AB root + NaHCO3

text: OneKP Sample ID: RIDD


PFSA

text: Department of Biological Sciences

text: public

text: PFSA

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: PFSA � tissue: root (3cm root tip) / treatment: 50 mM NaHCO3 (saline-alkali stress)

text: Glycine soja

text: Glycine soja

text: HiSeq

text: M.K. Deyholos 2016-127

text: BB root + NaHCO3

text: OneKP Sample ID: PFSA


TJMB

text: Department of Biological Sciences

text: public

text: TJMB

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: TJMB � tissue: root (3cm root tip) / treatment: 50 mM NaHCO3 (saline-alkali stress)

text: Glycine soja

text: Glycine soja

text: HiSeq

text: M.K. Deyholos 2016-127

text: CB root + NaHCO3

text: OneKP Sample ID: TJMB


AKRH

text: Department of Biological Sciences

text: public

text: AKRH

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: AKRH � tissue: root (3cm root tip) / treatment: 50 mM NaHCO3 (saline-alkali stress)

text: Glycine soja

text: Glycine soja

text: HiSeq

text: M.K. Deyholos 2016-127

text: DB root + NaHCO3

text: OneKP Sample ID: AKRH


FPLR

text: Department of Biological Sciences

text: public

text: FPLR

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: FPLR � tissue: root (3cm root tip) / treatment: 50 mM NaHCO3 (saline-alkali stress)

text: Glycine soja

text: Glycine soja

text: HiSeq

text: M.K. Deyholos 2016-127

text: EB root + NaHCO3

text: OneKP Sample ID: FPLR


LQUX

text: Department of Biological Sciences

text: public

text: LQUX

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: LQUX � tissue: root (3cm root tip) / treatment: 50 mM NaHCO3 (saline-alkali stress)

text: Glycine soja

text: Glycine soja

text: HiSeq

text: M.K. Deyholos 2016-127

text: FB root + NaHCO3

text: OneKP Sample ID: LQUX


ATQZ

text: Department of Biological Sciences

text: public

text: ATQZ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ATQZ

text: Acacia pycnantha

text: Acacia pycnantha

text: HiSeq

text: OneKP Sample ID: ATQZ


MGBF

text: Department of Biological Sciences

text: public

text: MGBF

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MGBF

text: Acacia pycnantha

text: Acacia pycnantha

text: HiSeq

text: OneKP Sample ID: MGBF


MYMP

text: Department of Biological Sciences

text: public

text: MYMP

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: MYMP � single plant

text: Astragalus propinquus

text: Astragalus propinquus

text: HiSeq

text: Wang 2141 (TAI)

text: leaves

text: OneKP Sample ID: MYMP


VHZV

text: Department of Biological Sciences

text: public

text: VHZV

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: VHZV � single plant

text: Gleditsia sinensis

text: Gleditsia sinensis

text: HiSeq

text: Wang 2148 (TAI)

text: leaves

text: OneKP Sample ID: VHZV


ZCDJ

text: Department of Biological Sciences

text: public

text: ZCDJ

text: 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: ZCDJ

text: Acacia argyrophylla

text: Acacia argyrophylla

text: HiSeq

text: OneKP Sample ID: ZCDJ