15/ Mco0212

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: 15/ Mco0212

text: DTU-GE

text: DTU

text: No

text: Switzerland

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

text: 15/ Mco0212

characteristic: isolate

text: animal

text: Escherichia coli

text: Escherichia coli

text: 15/ Mco0212


15/ Mco0406

status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: 15/ Mco0406

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Switzerland

characteristic: geo loc name

text: Switzerland

characteristic: geographic location (country and/or sea)

unit: DD

text: not provided

text: Sus scrofa domesticus

text: Yes

characteristic: is the sequenced pathogen host associated?

text: 15/ Mco0406

text: fattening pig

characteristic: isolation source host associated

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: 15/ Mco0406

characteristic: strain

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: DTU-GE

text: DTU

text: No

text: United Kingdom

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: isolate

text: caecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF ZURICH

characteristic: Submitter Id

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Life Sciences Research Unit

text: public

tag: Namespace:Life Sciences Research Unit

characteristic: cell type

text: house mouse

text: undifferentiated ST2 cells day1, silencing control, second biological replicate

text: siCTRL

text: Life Sciences Research Unit, University of Luxembourg

characteristic: lab host

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Life Sciences Research Unit

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: house mouse

text: undifferentiated ST2 cells day1, AHR silenced, second biological replicate

text: siAHR

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: ST2 differentiated in osteoblasts

text: house mouse

text: ST2 cells differentiated in osteoblasts day1, silencing control, second biological replicate

text: siCTRL

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: ST2 differentiated in osteoblasts

text: house mouse

text: ST2 cells differentiated in osteoblasts day1, AHR silenced, second biological replicate

text: siAHR

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: ST2 differentiated in adipocytes

text: house mouse

text: ST2 cells differentiated in adipocytes day1, silencing control, second biological replicate

text: siCTRL

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: ST2 differentiated in adipocytes

text: house mouse

text: ST2 cells differentiated in adipocytes day1, AHR silenced, second biological replicate

text: siAHR

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: house mouse

text: undifferentiated ST2 cells day1, silencing control, third biological replicate

text: siCTRL

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: house mouse

text: undifferentiated ST2 cells day1, AHR silenced, third biological replicate

text: siAHR

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: ST2 differentiated in osteoblasts

text: house mouse

text: ST2 cells differentiated in osteoblasts day1, silencing control, third biological replicate

text: siCTRL

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: ST2 differentiated in osteoblasts

text: house mouse

text: ST2 cells differentiated in osteoblasts day1, AHR silenced, third biological replicate

text: siAHR

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: ST2 differentiated in adipocytes

text: house mouse

text: ST2 cells differentiated in adipocytes day1, silencing control, third biological replicate

text: siCTRL

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: ST2 differentiated in adipocytes

text: house mouse

text: ST2 cells differentiated in adipocytes day1, AHR silenced, third biological replicate

text: siAHR

text: Mus musculus

text: Mus musculus


text: Medical University of Graz

text: public

tag: Namespace:Medical University of Graz

characteristic: collection date

text: indoor microbiome

characteristic: environment (biome)

text: surface microbiome

characteristic: environment (feature)

text: swab sample from indoor surface

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: indoor metagenome

text: Preaparing for the crewed Mars journey: Microbiome dynamics in the confined Mars500 habitat during simulated Mars flight and landing

characteristic: project name

text: indoor metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: Mars500 microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:Institute for Regenerative Medicine & Biotherapy (IRMB) U1183 - INSERM - Universite Montpellier - CHU

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bone marrow cancer cell

text: human

characteristic: common name

text: Protocols: Three AML samples (AML-Normal-Karyotype, AML-t(15;17) and AML-inv16) taken from patients OM100011, OM110223 and OS110089, respectively from the Biological Resources Center, CHU-Nîmes, France, were selected for RNA-seq experiments. Peripheral Blood Nononucleated Cells (PBMC) from total blood (OS110089) or Bone marrow cells (OM100011, OM110223) were isolated by density gradient centrifugation on Ficoll. Total RNA was isolated using mini RNeasy kit (Qiagen) according to the manufacturer instructions. The quantity and quality of extracted RNA was evaluated using the NanoDrop ND-1000 spectrophotometer and the Agilent 2100 BioAnalyzer. A poly-adenylated stranded cDNA library was created for each sample from 4 µg of total RNA (performed under contract by GATC biotech using proprietary protocol).

characteristic: description

text: acute myeloid leukemia

characteristic: disease

characteristic: individual

text: normal

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

text: Institute for Regenerative Medicine & Biotherapy (IRMB) U1183 - INSERM - Universite Montpellier - CHU

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: bone marrow cancer cell

characteristic: cell type

text: human

text: acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: blood cell

text: human

text: acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male


text: UNIVERSITY OF ZURICH

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: TEAGASC

text: public

characteristic: collection date

text: gut

characteristic: environment (biome)

text: stool

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: A pilot study demonstrating the altered gut microbiota functionality in stable adults with Cystic Fibrosis

characteristic: project name

text: human gut metagenome

text: wgs

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPSC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: RNA from vascular cambium tissues of Populus maximowiczii x Populus trichocarpa hybrid (OP42) at 0 hours after stem cutting

characteristic: description

characteristic: organism

characteristic: title


text: UPSC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Populus maximowiczii x Populus trichocarpa

characteristic: common name


text: UPSC

text: public

text: RNA from vascular cambium tissues of Populus maximowiczii x Populus trichocarpa hybrid (OP42) at 24 hours after stem cutting


text: PTP

text: public

characteristic: collection date

text: cattle

text: Rumen

text: temperate grassland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: bodily fluid

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Body fluid suspension

characteristic: host body product

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Bos taurus

text: Ruminomics EU FP7

text: Bos taurus

text: Illumina HiSeq 2000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PTP

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: cattle

text: Rumen

characteristic: description

text: temperate grassland biome

text: farm

text: bodily fluid

text: Finland

text: Body fluid suspension

text: host-associated

text: metagenome

text: Bos taurus

characteristic: organism

text: Ruminomics EU FP7

characteristic: project name

text: Bos taurus

text: Illumina HiSeq 2000

characteristic: sequencing method


text: PTP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: cattle

characteristic: common name

text: Rumen

text: temperate grassland biome

characteristic: environment (biome)

text: farm

characteristic: environment (feature)

text: bodily fluid

characteristic: environment (material)

text: Italy

text: Body fluid suspension

text: host-associated

text: metagenome

text: Bos taurus

text: Ruminomics EU FP7

text: Bos taurus

text: Illumina HiSeq 2000

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PTP

text: public

text: cattle

text: Rumen

text: temperate grassland biome

text: farm

text: bodily fluid

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Body fluid suspension

characteristic: host body product

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Bos taurus

text: Ruminomics EU FP7

text: Bos taurus

text: Illumina HiSeq 2000


text: TRINITY COLLEGE DUBLIN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:TRINITY COLLEGE DUBLIN

characteristic: Submitter Id

text: sheep

text: Ovis aries

characteristic: organism

text: Ovis aries

text: YG01 65bp reads


characteristic: ENA-CHECKLIST

text: TRINITY COLLEGE DUBLIN

text: public

text: sheep

characteristic: common name

text: Ovis aries

text: Ovis aries

text: YG13 65bp reads

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG14 65bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG15 65bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG16 65bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG17 65bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG18 65bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG28 65bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: sheep

text: Ovis aries

text: Ovis aries

text: YG01 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: sheep

text: Ovis aries

text: Ovis aries

text: YG13 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG14 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG15 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG16 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG17 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG18 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: YG28 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: sheep

text: Ovis aries

text: Ovis aries

text: BA32 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: sheep

text: Ovis aries

text: Ovis aries

text: BA38 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: sheep

text: Ovis aries

text: Ovis aries

text: BA39 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: sheep

text: Ovis aries

text: Ovis aries

text: BA67 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: sheep

text: Ovis aries

text: Ovis aries

text: BA74 150bp reads


text: TRINITY COLLEGE DUBLIN

text: public

text: sheep

text: Ovis aries

text: Ovis aries

text: BA88 150bp reads


text: public

tag: Namespace:WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

characteristic: chemical administration

characteristic: collection date

text: mouse gut metagenome

text: mouse gut bacterial 16S V4

characteristic: description

text: host-associated habitat

characteristic: environment (biome)

text: mammalia-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: week

characteristic: host age

text: house mouse

characteristic: host common name

text: Purina 9F

characteristic: host diet

text: ICR

characteristic: host genotype

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

text: mouse gut metagenome

text: C

characteristic: perturbation

text: Attenuated effects of bile acids on glucose metabolism and insulin sensitivity in a male mouse model of prenatal undernutrition

characteristic: project name

text: mouse gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: mouse gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: chemical administration

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

text: mouse gut bacterial 16S V4

characteristic: description

text: host-associated habitat

characteristic: environment (biome)

text: mammalia-associated habitat

text: feces

text: USA

text: house mouse

text: Purina 9F

text: ICR

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

characteristic: organism

text: UN

text: mouse gut metagenome

text: Illumina MiSeq

text: 16S rRNA

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: UDCA

text: mouse gut metagenome

text: mouse gut bacterial 16S V4

text: host-associated habitat

text: mammalia-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: house mouse

characteristic: host common name

text: Purina 9F

characteristic: host diet

text: ICR

characteristic: host genotype

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

text: mouse gut metagenome

text: C

characteristic: perturbation

characteristic: project name

text: mouse gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: mouse gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: chemical administration

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

text: mouse gut bacterial 16S V4

characteristic: description

text: host-associated habitat

characteristic: environment (biome)

text: mammalia-associated habitat

text: feces

text: USA

text: house mouse

text: Purina 9F

text: ICR

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

characteristic: organism

text: C

text: mouse gut metagenome

text: Illumina MiSeq

text: 16S rRNA

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: UDCA

text: mouse gut metagenome

text: mouse gut bacterial 16S V4

text: host-associated habitat

text: mammalia-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: house mouse

characteristic: host common name

text: Purina 9F

characteristic: host diet

text: ICR

characteristic: host genotype

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: metagenome

text: mouse gut metagenome

text: UN

characteristic: perturbation

characteristic: project name

text: mouse gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: mouse gut metagenome


E-MTAB-5493:M229 Control

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5493:M229 Control

tag: Namespace:Division of Chemistry and Chemical Engineering, Caltech

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Cells are cultured in RPMI1640 medium. Medium was drug is replenished every 2days. The dose of vemurafenib for each cell line is the 2 times of the IC50 (half growth inhibition) value of each cell line. The dose of TNF is 1000IU/ml. RNA libraries were prepared for sequencing using standard Illumina protocols

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: M229 Control

characteristic: title


E-MTAB-5493:M229 Day3

text: Division of Chemistry and Chemical Engineering, Caltech

text: public

text: E-MTAB-5493:M229 Day3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M229 Day3


E-MTAB-5493:M229 Day21

text: public

text: E-MTAB-5493:M229 Day21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M229 Day21


E-MTAB-5493:M229 Day90

text: public

text: E-MTAB-5493:M229 Day90

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M229 Day90


E-MTAB-5493:M229 TNF

text: public

text: E-MTAB-5493:M229 TNF

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M229 TNF


E-MTAB-5493:M233 Control

text: public

text: E-MTAB-5493:M233 Control

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M233 Control


E-MTAB-5493:M233 Day3

text: public

text: E-MTAB-5493:M233 Day3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M233 Day3


E-MTAB-5493:M233 Day21

text: public

text: E-MTAB-5493:M233 Day21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M233 Day21


E-MTAB-5493:M249 Control

text: public

text: E-MTAB-5493:M249 Control

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M249 Control


E-MTAB-5493:M249 Day3

text: public

text: E-MTAB-5493:M249 Day3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M249 Day3


E-MTAB-5493:M249 Day21

text: public

text: E-MTAB-5493:M249 Day21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M249 Day21


E-MTAB-5493:M255 Control

text: public

text: E-MTAB-5493:M255 Control

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M255 Control


E-MTAB-5493:M255 Day3

text: public

text: E-MTAB-5493:M255 Day3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M255 Day3


E-MTAB-5493:M255 Day21

text: public

text: E-MTAB-5493:M255 Day21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M255 Day21


E-MTAB-5493:M262 Control

text: public

text: E-MTAB-5493:M262 Control

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M262 Control


E-MTAB-5493:M262 Day3

text: public

text: E-MTAB-5493:M262 Day3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M262 Day3


E-MTAB-5493:M262 Day21

text: public

text: E-MTAB-5493:M262 Day21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M262 Day21


E-MTAB-5493:M263 Control

text: public

text: E-MTAB-5493:M263 Control

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M263 Control


E-MTAB-5493:M263 Day3

text: public

text: E-MTAB-5493:M263 Day3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M263 Day3


E-MTAB-5493:M263 Day21

text: public

text: E-MTAB-5493:M263 Day21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M263 Day21


E-MTAB-5493:M263 Day90

text: public

text: E-MTAB-5493:M263 Day90

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M263 Day90


E-MTAB-5493:M263 TNF

text: public

text: E-MTAB-5493:M263 TNF

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M263 TNF


E-MTAB-5493:M381 Control

text: public

text: E-MTAB-5493:M381 Control

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M381 Control


E-MTAB-5493:M381 Day3

text: public

text: E-MTAB-5493:M381 Day3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M381 Day3


E-MTAB-5493:M381 Day21

text: public

text: E-MTAB-5493:M381 Day21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M381 Day21


E-MTAB-5493:M397 Control

text: public

text: E-MTAB-5493:M397 Control

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M397 Control


E-MTAB-5493:M397 Day3

text: public

text: E-MTAB-5493:M397 Day3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M397 Day3


E-MTAB-5493:M397 Day21

text: public

text: E-MTAB-5493:M397 Day21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M397 Day21


E-MTAB-5493:M397 Day73

text: public

text: E-MTAB-5493:M397 Day73

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M397 Day73


E-MTAB-5493:M397 TNF

text: public

text: E-MTAB-5493:M397 TNF

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M397 TNF


E-MTAB-5493:M409 Control

text: public

text: E-MTAB-5493:M409 Control

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M409 Control


E-MTAB-5493:M409 Day3

text: public

text: E-MTAB-5493:M409 Day3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M409 Day3


E-MTAB-5493:M409 Day21

text: public

text: E-MTAB-5493:M409 Day21

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: M409 Day21


text: CNRS

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia

characteristic: strain

text: Paramecium tetraurelia mRNA sequencing after EZL1 depletion


characteristic: ENA-CHECKLIST

text: CNRS

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium tetraurelia mRNA sequencing after ICL7 depletion


characteristic: ENA-FIRST-PUBLIC

text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: RNA from vascular cambium tissues of P. tremula x P. tremuloides (T89 hybrid aspen) at 0 hours after stem cutting

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


characteristic: ENA-LAST-UPDATE

text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: RNA from vascular cambium tissues of P. tremula x P. tremuloides (T89 hybrid aspen) at 24 hours after stem cutting

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


characteristic: External Id

text: UL-LS

text: public

characteristic: collection date

text: 16S amplicons from ryegrass soil columns exposed to diffeerent amounts of phosphate fertilizer

text: Grassland

characteristic: environment (biome)

text: Ryegrass

characteristic: environment (feature)

text: soil-rhizosphere

characteristic: environment (material)

text: Ireland

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52° 39' 53 N

characteristic: geographic location (latitude)

text: 8° 37' 23 W

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: bacterium

text: SoilModeling

characteristic: project name

text: bacterium

text: MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

text: UL-LS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: Grassland

text: Ryegrass

text: soil-rhizosphere

text: Ireland

text: 52° 39' 53 N

text: 8° 37' 23 W

text: metagenome

text: bacterium

characteristic: organism

text: SoilModeling

text: bacterium

text: MiSeq

text: soil

text: 16S amplicons from ryegrass soil columns

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMCG

text: public

characteristic: collection date

text: Netherlands

characteristic: country

text: Enterococcus faecium

text: Enterococcus faecium


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: RS5108 RNA

text: Pristionchus marianneae

text: Pristionchus marianneae


text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: RS5106 RNA

text: Pristionchus aerivorus

text: Pristionchus aerivorus


text: public

text: RS5231 RNA

text: Pristionchus brevicauda

text: Pristionchus brevicauda


text: public

text: RS5284 RNA

text: Pristionchus clavus

text: Pristionchus clavus


text: public

text: RS5460 RNA

text: Pristionchus mayeri

text: Pristionchus mayeri


text: Mayo Clinic

text: public

tag: Namespace:Mayo Clinic

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: PDAC tissue from surgical samples was fragmented, mixed with 100 μL of Matrigel and implanted with a trocar (10 gauge; Innovative Research of America, Sarasota, FL) in the subcutaneous right upper flank of an anesthetized and disinfected male NMRI-nude mouse. Samples obtained from EUS-FNA were mixed with 100 μL of Matrigel (BD Biosciences, Franklin Lakes, NJ) and injected in the upper right flank of a male nude mice (Swiss Nude Mouse Crl: NU(lco)-Foxn1nu; Charles River Laboratories, Wilmington, MA) for the first implantation. When xenografts reached 1 cm3, these were removed and passed to NMRI-nude mice in the same manner as the surgical samples. All animal experiments were conducted in accordance with institutional guidelines and were approved by the “Plateforme de Stabulation et d’Expérimentation Animale” (PSEA, Scientific Park of Luminy, Marseille). None No treatment was provide DNA was extracted using Blood & Cell culture DNA mini kit (Qiagen) following the manufacturer's instructions.

text: pancreatic adenocarcinoma

characteristic: disease

text: xenograft in nude mouse

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: classical

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Mayo Clinic

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: basal

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Mayo Clinic

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: AM.IP

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

text: basal

text: Homo sapiens

characteristic: title


characteristic: External Id

text: Mayo Clinic

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: pancreatic adenocarcinoma

characteristic: disease

text: xenograft in nude mouse

text: AH.IP

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: basal

text: Homo sapiens


text: Mayo Clinic

text: public

text: ArrayExpress

text: human

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

characteristic: growth condition

text: AO.IP

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: classical

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Mayo Clinic

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: AO.IPC

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: classical

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Mayo Clinic

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: B.Tim

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: basal

text: Homo sapiens


text: Mayo Clinic

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: D.IP

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

text: basal

text: Homo sapiens

characteristic: title


characteristic: External Id

text: URMITE

text: public

text: Bacillus sp. Marseille-P3800

text: Bacillus sp. Marseille-P3800

characteristic: strain

text: Culturomics project


text: URMITE

text: public

text: Neglecta sp. Marseille-P3890

text: Neglecta sp. Marseille-P3890

text: Culturomics project


text: Mayo Clinic

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: PDAC tissue from surgical samples was fragmented, mixed with 100 μL of Matrigel and implanted with a trocar (10 gauge; Innovative Research of America, Sarasota, FL) in the subcutaneous right upper flank of an anesthetized and disinfected male NMRI-nude mouse. Samples obtained from EUS-FNA were mixed with 100 μL of Matrigel (BD Biosciences, Franklin Lakes, NJ) and injected in the upper right flank of a male nude mice (Swiss Nude Mouse Crl: NU(lco)-Foxn1nu; Charles River Laboratories, Wilmington, MA) for the first implantation. When xenografts reached 1 cm3, these were removed and passed to NMRI-nude mice in the same manner as the surgical samples. All animal experiments were conducted in accordance with institutional guidelines and were approved by the “Plateforme de Stabulation et d’Expérimentation Animale” (PSEA, Scientific Park of Luminy, Marseille). RNA was extracted using RNeasy mini kit with optional on column DNA digestion (Qiagen). RNA libraries were prepared (Illumina TruSeq mRNA v2) and run on the Illumina High Seq-2000 for 101 bp paired end reads

text: pancreatic adenocarcinoma

characteristic: disease

text: xenograft in nude mouse

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: classical

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Mayo Clinic

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: Homo sapiens

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: basal

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Mayo Clinic

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: AH.IP

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: basal

text: Homo sapiens

text: AH.IP


characteristic: External Id

text: Mayo Clinic

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: AM.IP

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

text: basal

text: Homo sapiens

text: AM.IP

characteristic: title


text: Mayo Clinic

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: pancreatic adenocarcinoma

characteristic: disease

text: xenograft in nude mouse

characteristic: growth condition

text: AO.IP

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: classical

text: Homo sapiens

text: AO.IP


characteristic: ENA-CHECKLIST

text: Mayo Clinic

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: B.Tim

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: basal

text: Homo sapiens

text: B.Tim


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Mayo Clinic

text: public

text: ArrayExpress

text: human

text: pancreatic adenocarcinoma

text: xenograft in nude mouse

text: D.IP

text: Homo sapiens

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: basal

characteristic: phenotype

text: Homo sapiens

text: D.IP


characteristic: External Id

text: DTU-GE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Kayode Fashae

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Nigeria:Southwest:Ibadan

characteristic: geo loc name

text: Nigeria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fecal sample

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Colindale

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Kayode Fashae

text: No

text: Nigeria:Southwest:Ibadan

text: Nigeria

text: not provided

text: Bos taurus

text: Yes

text: fecal sample

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Colindale


text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Kayode Fashae

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Nigeria:Southwest:Ibadan

characteristic: geo loc name

text: Nigeria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Homo sapiens

text: Yes

text: fecal sample

text: Salmonella enterica

text: Salmonella enterica

text: Rubislaw


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Kayode Fashae

text: No

text: Nigeria:Southwest:Ibadan

text: Nigeria

text: not provided

text: Bos taurus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fecal sample

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Kentucky

characteristic: serovar

characteristic: strain


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Kayode Fashae

characteristic: collected by

characteristic: collection date

text: No

text: Nigeria:Southwest:Ibadan

text: Nigeria

text: not provided

text: Gallus gallus

text: Yes

text: fecal sample

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Kentucky


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Kayode Fashae

text: No

characteristic: environmental sample

text: Nigeria:Southwest:Ibadan

characteristic: geo loc name

text: Nigeria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Homo sapiens

text: Yes

text: fecal sample

text: Salmonella enterica

text: Salmonella enterica

text: Urbana


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: DTU-GE

text: Kayode Fashae

text: No

text: Nigeria:Southwest:Ibadan

text: Nigeria

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fecal sample

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Agama

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Kayode Fashae

characteristic: collected by

characteristic: collection date

text: No

text: Nigeria:Southwest:Ibadan

text: Nigeria

text: not provided

text: Homo sapiens

text: Yes

text: fecal sample

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Kentucky


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id

characteristic: title


text: WT

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: WT

characteristic: phenotype

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

text: public

characteristic: SRA accession

tag: Namespace:ISTITUTO SUPERIORE DI SANITA

characteristic: Submitter Id

text: Italy

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: faeces

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

characteristic: serovar

characteristic: strain

text: STEC O26 ED1020


text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Italy

text: healthy

text: Homo sapiens

text: faeces

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: STEC O26 ED1021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

text: public

text: Italy

text: diseased

text: Homo sapiens

text: faeces

text: Escherichia coli

text: Escherichia coli

text: STEC O26 ED1022


text: Center for Biotechnology (CeBiTec)

text: public

characteristic: SRA accession

tag: Namespace:Center for Biotechnology (CeBiTec)

characteristic: Submitter Id

text: Biogas fermenter

characteristic: environment (biome)

text: anaerobic filter

characteristic: environment (feature)

text: biofilm material

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: biogas fermenter metagenome

text: Laboratory-scaled experimental biogas fermenter

characteristic: project name

text: biogas fermenter metagenome

text: illumina

characteristic: sequencing method

text: System 2 - Bergmann M - Mesophilic laboratory-scaled experimental biogas fermenter


text: Center for Biotechnology (CeBiTec)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Biogas fermenter

text: anaerobic filter

text: biofilm material

text: Germany

text: metagenome

text: biogas fermenter metagenome

characteristic: organism

text: biogas fermenter metagenome

text: illumina

text: System 3 - Bergmann F - Thermophilic laboratory-scaled experimental biogas fermenter

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for Biotechnology (CeBiTec)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Biogas fermenter

characteristic: environment (biome)

text: anaerobic filter

text: biofilm material

text: Germany

text: metagenome

text: biogas fermenter metagenome

text: biogas fermenter metagenome

text: illumina

text: System 1 - Heeg 1 - Thermophilic laboratory-scaled experimental biogas fermenter


text: Center for Biotechnology (CeBiTec)

text: public

text: Biogas fermenter

text: anaerobic filter

characteristic: environment (feature)

text: biofilm material

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: biogas fermenter metagenome

text: biogas fermenter metagenome

text: illumina

text: System 1 - Heeg 2 - Thermophilic laboratory-scaled experimental biogas fermenter


text: Center for Biotechnology (CeBiTec)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Biogas fermenter

text: anaerobic filter

text: biofilm material

text: Germany

text: metagenome

text: biogas fermenter metagenome

characteristic: project name

text: biogas fermenter metagenome

text: illumina

characteristic: sequencing method

text: System 1 - Heeg 3 - Thermophilic laboratory-scaled experimental biogas fermenter


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

text: public

characteristic: SRA accession

text: Italy

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: faeces

characteristic: isolation source

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: serovar

characteristic: strain

text: STEC O26 ED1012

characteristic: title


text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: faeces

text: Escherichia coli

text: Escherichia coli

text: STEC O26 ED1013


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ISTITUTO SUPERIORE DI SANITA

text: public

characteristic: collection date

text: Italy

text: diseased

text: Homo sapiens

text: faeces

text: Escherichia coli

text: Escherichia coli

text: STEC O26 ED1014


characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

text: public

characteristic: SRA accession

text: Italy

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: faeces

text: Escherichia coli

text: Escherichia coli

text: STEC O26 ED1015


text: ISTITUTO SUPERIORE DI SANITA

text: public

text: Italy

text: healthy

text: Homo sapiens

characteristic: isolate

text: faeces

characteristic: isolation source

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: serovar

text: STEC O26 ED1016


text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Italy

text: diseased

text: Homo sapiens

text: faeces

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: STEC O26 ED1017

characteristic: title


text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: faeces

text: Escherichia coli

text: Escherichia coli

text: STEC O26 ED1018


E-MTAB-5830:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5830:Sample 1

tag: Namespace:Institute of Biochemistry and Biophysics Polish Academy of Sciences

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Protocols: 5-week-old WT and er/erl1/erl2 seedlings growth in long-day condition were used to MNase-Seq. Mapping nucleosome positioning was performed with 2g samples of WT and er/erl1/erl2. according to Saleh et al. (2008) and Zhu et al. (2013) with minor modifications (i.e. the buffer contained 1% proteinase inhibitor cocktail (Sigma) instead of pepstatin A and aprotinin). 200 Kunitz Units of Micrococcal Nuclease (NEB) were used for digestion of each sample. DNA was purified with phenol:chloroform extraction, ethanol precipitation and size separated on 2% agarose gels. Bands corresponding to ~150 bp were gel isolated, purified and used for library construction. Illumina compatible libraries of MNase-treated gDNA were prepared according to the protocol of Ovation Ultralow DNA Library kit (NuGEN).

characteristic: description

text: seedling

characteristic: developmental stage

characteristic: ecotype

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: wild type genotype

characteristic: phenotype

text: Arabidopsis thaliana

text: Sample 1


E-MTAB-5830:Sample 2

characteristic: External Id

text: Institute of Biochemistry and Biophysics Polish Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5830:Sample 2

text: ArrayExpress

text: thale cress

text: seedling

text: long day length regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: whole organism

text: ERECTA, ERL1, ERL2 mutant

text: Arabidopsis thaliana

text: Sample 2

characteristic: title


E-MTAB-5818:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EPFL SV IBI-SV

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5818:Sample 1

tag: Namespace:EPFL SV IBI-SV

characteristic: Submitter Id

text: 8 to 12

text: ArrayExpress

text: mesenchymal stem cell of adipose

characteristic: cell type

text: house mouse

text: Protocols: Subcutaneous adipose tissue depots were dissected from male and female 8-12-week-old Pref1-RFP mice into ice cold PBS. The tissue was finely minced using scissors, transferred into collagenase (Sigma-Aldrich #C6885-1G, 2 mg/ml of collagenase buffer (25 mM NaHCO3, 12 mM KH2PO4, 1.2 m MgSO4, 4.8 mM KCl, 120 mM NaCl, 1.4 mM CaCl2, 5 mM Glucose, 2.5% BSA, pH = 7.4)) and incubated for 1 hour at 37_C under agitation. Following a 1 min centrifugation at 400g, at room temperature (RT), floating mature lipid-filled adipocytes were aspirated and the suspension was filtered through a 40 µm cell strainer to ensure a single cell preparation. Next, a red blood cell (RBC) lysis was performed by incubating the pelleted cells in the RBC lysis buffer (154 mM NH4Cl, 10 mM KHCO3, 0.1 mM EDTA) for 5 min, followed by two washes (5 min centrifugations at 400g, RT) with FACS buffer (PBS with 3% foetal bovine serum (FBS) (Gibco #10270-106), 1mM EDTA, 1 % penicillin/streptavidin (P/S) (Gibco #15140122)). The isolated single cell suspension was diluted to 0.75 or 1 * 107 cells/ml with FACS buffer (PBS with 3% FBS, 1mM EDTA, 1% P/S and the following fluorophore-conjugated antibodies were added (in titration-determined quantities): anti-mouse CD31-AF488, anti-mouse CD45-AF488, anti-mouse TER119-AF488 (all BioLegend #303110, #304017 and #116215 respectively) for selecting the Lin- population, anti-mouse SCA1-PE-Cy7 (BioLegend #122513), anti-mouse CD34-BV421 (BioLegend #119321) and anti-mouse CD29- PerCP-efluor710 (eBiosciences #46-0291) to enrich the Lin- population with ASPCs. Single cell capture, lysis, reverse transcription and cDNA amplification were performed using the SMARTer cDNA synthesis kit (Clonetech) and Advantage2PCR kit (Clonetech). Harvested cDNA from single cells after C1-Autoprep system run were used to make single cell libraries using Nextera XT DNA sample preparation kit (Illumina).

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: adipose tissue

text: RFP negative

text: Mus musculus

characteristic: strain

text: Sample 1


E-MTAB-5818:Sample 2

characteristic: ENA-LAST-UPDATE

text: EPFL SV IBI-SV

text: public

text: E-MTAB-5818:Sample 2

text: 8 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mesenchymal stem cell of adipose

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: adipose tissue

characteristic: organism part

text: RFP positive

text: Mus musculus

text: Sample 2


E-MTAB-5818:Sample 3

characteristic: External Id

text: EPFL SV IBI-SV

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5818:Sample 3

text: 8 to 12

text: ArrayExpress

text: mesenchymal stem cell of adipose

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: adipose tissue

text: RFP negative

characteristic: phenotype

text: Mus musculus

text: Sample 3


E-MTAB-5818:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EPFL SV IBI-SV

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5818:Sample 4

characteristic: Submitter Id

text: 8 to 12

text: ArrayExpress

text: mesenchymal stem cell of adipose

text: house mouse

text: Mus musculus

text: Mus musculus

text: adipose tissue

text: RFP positive

text: Mus musculus

text: Sample 4

characteristic: title


E-MTAB-5818:Sample 5

characteristic: ENA-LAST-UPDATE

text: EPFL SV IBI-SV

text: public

text: E-MTAB-5818:Sample 5

text: 8 to 12

characteristic: age

text: ArrayExpress

text: mesenchymal stem cell of adipose

characteristic: cell type

text: house mouse

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: adipose tissue

text: RFP negative

text: Mus musculus

characteristic: strain

text: Sample 5


E-MTAB-5818:Sample 6

characteristic: External Id

text: EPFL SV IBI-SV

characteristic: INSDC center name

text: public

text: E-MTAB-5818:Sample 6

text: 8 to 12

text: ArrayExpress

characteristic: broker name

text: mesenchymal stem cell of adipose

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: adipose tissue

characteristic: organism part

text: RFP positive

text: Mus musculus

text: Sample 6


E-MTAB-5818:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EPFL SV IBI-SV

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5818:Sample 7

text: 8 to 12

text: ArrayExpress

text: mesenchymal stem cell of adipose

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: adipose tissue

text: RFP negative

characteristic: phenotype

text: Mus musculus

text: Sample 7


E-MTAB-5818:Sample 8

characteristic: ENA-LAST-UPDATE

text: EPFL SV IBI-SV

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5818:Sample 8

characteristic: Submitter Id

text: 8 to 12

characteristic: age

text: ArrayExpress

text: mesenchymal stem cell of adipose

text: house mouse

text: Mus musculus

text: Mus musculus

text: adipose tissue

text: RFP positive

text: Mus musculus

text: Sample 8

characteristic: title


E-MTAB-5818:Sample 9

characteristic: External Id

text: EPFL SV IBI-SV

characteristic: INSDC center name

text: public

text: E-MTAB-5818:Sample 9

text: 8 to 12

text: ArrayExpress

text: mesenchymal stem cell of adipose

characteristic: cell type

text: house mouse

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: adipose tissue

text: RFP negative

text: Mus musculus

characteristic: strain

text: Sample 9


E-MTAB-5818:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EPFL SV IBI-SV

text: public

text: E-MTAB-5818:Sample 10

text: 8 to 12

text: ArrayExpress

characteristic: broker name

text: mesenchymal stem cell of adipose

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: adipose tissue

characteristic: organism part

text: RFP negative

text: Mus musculus

text: Sample 10


characteristic: ENA-LAST-UPDATE

text: Freie University of Berlin

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Freie University of Berlin

characteristic: collection date

text: pig

text: faeces

characteristic: environment (biome)

text: barn

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52.458569 N

characteristic: geographic location (latitude)

text: 13.288657 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Sus scrofa

characteristic: organism

characteristic: project name

text: Sus scrofa

text: ILLUMINA NextSeq 500

characteristic: sequencing method

text: pig gut metagenome from Weaned pig 01 - Zinc low dose


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: pig

characteristic: common name

text: faeces

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 02 - Zinc low dose

characteristic: title


text: Freie University of Berlin

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: collection date

text: pig

text: faeces

characteristic: environment (biome)

text: barn

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52.458569 N

characteristic: geographic location (latitude)

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 03 - Zinc low dose


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

text: pig

text: faeces

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Sus scrofa

characteristic: organism

characteristic: project name

text: Sus scrofa

text: ILLUMINA NextSeq 500

characteristic: sequencing method

text: pig gut metagenome from Weaned pig 04 - Zinc low dose


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: pig

characteristic: common name

text: faeces

characteristic: environment (biome)

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 05 - Zinc low dose

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

text: pig

text: faeces

text: barn

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52.458569 N

characteristic: geographic location (latitude)

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 06 - Zinc low dose


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: pig

text: faeces

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Sus scrofa

characteristic: organism

characteristic: project name

text: Sus scrofa

text: ILLUMINA NextSeq 500

characteristic: sequencing method

text: pig gut metagenome from Weaned pig 07 - Zinc normal dose


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: pig

characteristic: common name

text: faeces

characteristic: environment (biome)

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 08 - Zinc normal dose

characteristic: title


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: pig

text: faeces

text: barn

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52.458569 N

characteristic: geographic location (latitude)

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 09 - Zinc normal dose


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

text: pig

text: faeces

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Sus scrofa

characteristic: organism

characteristic: project name

text: Sus scrofa

text: ILLUMINA NextSeq 500

characteristic: sequencing method

text: pig gut metagenome from Weaned pig 10 - Zinc normal dose


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: pig

characteristic: common name

text: faeces

characteristic: environment (biome)

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 11 - Zinc normal dose

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

text: pig

text: faeces

text: barn

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52.458569 N

characteristic: geographic location (latitude)

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 12 - Zinc normal dose


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: pig

text: faeces

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Sus scrofa

characteristic: organism

characteristic: project name

text: Sus scrofa

text: ILLUMINA NextSeq 500

characteristic: sequencing method

text: pig gut metagenome from Weaned pig 13 - Zinc high dose


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: pig

characteristic: common name

text: faeces

characteristic: environment (biome)

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 14 - Zinc high dose

characteristic: title


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: pig

text: faeces

text: barn

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52.458569 N

characteristic: geographic location (latitude)

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 15 - Zinc high dose


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

text: pig

text: faeces

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Sus scrofa

characteristic: organism

characteristic: project name

text: Sus scrofa

text: ILLUMINA NextSeq 500

characteristic: sequencing method

text: pig gut metagenome from Weaned pig 16 - Zinc high dose


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: pig

characteristic: common name

text: faeces

characteristic: environment (biome)

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 17 - Zinc high dose

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

text: pig

text: faeces

text: barn

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52.458569 N

characteristic: geographic location (latitude)

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 18 - Zinc high dose


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: pig

text: faeces

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Sus scrofa

characteristic: organism

characteristic: project name

text: Sus scrofa

text: ILLUMINA NextSeq 500

characteristic: sequencing method

text: pig gut metagenome from Weaned pig 19 - Zinc organic dose


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: pig

characteristic: common name

text: faeces

characteristic: environment (biome)

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 20 - Zinc organic dose

characteristic: title


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: pig

text: faeces

text: barn

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52.458569 N

characteristic: geographic location (latitude)

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 500

text: pig gut metagenome from Weaned pig 21 - Zinc organic dose


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

text: pig

text: faeces

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Sus scrofa

characteristic: organism

characteristic: project name

text: Sus scrofa

text: ILLUMINA NextSeq 500

characteristic: sequencing method

text: pig gut metagenome from Weaned pig 22 - Zinc organic dose


text: Freie University of Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: pig

characteristic: common name

text: faeces

characteristic: environment (biome)

text: barn

text: stool

text: Germany

text: 52.458569 N

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 501

text: pig gut metagenome from Weaned pig 23 - Zinc organic dose

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Freie University of Berlin

text: public

text: pig

text: faeces

text: barn

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 52.458569 N

characteristic: geographic location (latitude)

text: 13.288657 E

text: metagenome

text: microbial mat/biofilm

text: Sus scrofa

text: Sus scrofa

text: ILLUMINA NextSeq 502

text: pig gut metagenome from Weaned pig 24 - Zinc organic dose


Human PSC (Control) Replicate1

text: kiwamoto

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Human PSC (Control) Replicate1

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


Human PSC (Control) Replicate2

text: kiwamoto

text: public

characteristic: SRA accession

text: Human PSC (Control) Replicate2

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


Human PSC (Control) Replicate3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: kiwamoto

text: public

text: Human PSC (Control) Replicate3

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: title


Human PSC (Tamoxifen) Replicate1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: kiwamoto

text: public

text: Human PSC (Tamoxifen) Replicate1

text: human

text: Homo sapiens

text: Homo sapiens


Human PSC (Tamoxifen) Replicate2

text: kiwamoto

text: public

text: Human PSC (Tamoxifen) Replicate2

text: human

text: Homo sapiens

text: Homo sapiens


Human PSC (Tamoxifen) Replicate3

text: kiwamoto

text: public

text: Human PSC (Tamoxifen) Replicate3

text: human

text: Homo sapiens

text: Homo sapiens


text: FUDAN UNIVERSITY

text: public

tag: Namespace:FUDAN UNIVERSITY

characteristic: collection date

text: Mycobacterium tuberculosis

text: Longitudinal

characteristic: description

text: China

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

text: Sputum sample

characteristic: isolate

text: Sputum sample

characteristic: isolation source

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: IFIK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: nasal swab from pig

text: pig metagenome

text: pig metagenome


text: IFIK

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: nasal swab from individual without contact to farm animals left nare anterior

text: human metagenome

characteristic: organism

text: human metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IFIK

text: public

text: nasal swab from individual without contact to farm animals left nare posterior

text: human metagenome

text: human metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_10_0__


text: IFIK

text: public

text: nasal swab from pig farmer left nare anterior

characteristic: description

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: nasal swab from pig farmer left nare posterior

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_11_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_1_0__


text: IFIK

text: public

text: nasal swab from cow farmer left nare anterior

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: nasal swab from cow farmer left nare posterior

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_13_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_3_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_17_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_4_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_22_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_5_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_23_0__


text: IFIK

text: public

text: nasal swab from pig

text: pig metagenome

text: pig metagenome


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_24_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_25_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_26_0__


text: IFIK

text: public

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_6_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_7_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_8_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_9_0__


text: IFIK

text: public

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_14_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_2_0__


text: IFIK

text: public

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_15_0__


text: IFIK

text: public

text: nasal swab from pig

text: pig metagenome

text: pig metagenome


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_16_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_18_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_20_0__


text: IFIK

text: public

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: human metagenome

text: human metagenome


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_21_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_27_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_28_0__


text: IFIK

text: public

text: air sample from pig farm

text: air metagenome

text: air metagenome

text: air sample from pig farm_12_0__


E-MTAB-5573:D408A 1

text: The University of Birmingham

text: public

text: E-MTAB-5573:D408A 1

tag: Namespace:The University of Birmingham

characteristic: biological replicate

text: ArrayExpress

characteristic: broker name

text: Protocols: Strains were grown in MOPS minimal medium, supplemented with histidine, to an OD600 of 0.6. All strains were incubated at 37°C, shaking at 180 rpm. Frozen bacteria pellets obtained from 3 mL of culture were used for extraction of total RNA. The Promega SV Total RNA Isolation kit was used according to manufacturer's instructions. Samples were heated at 70°C for 3 minutes and centrifuged for 10 minutes at full speed after addition of the RNA dilution buffer. RNA was eluted in water and 1 uL of an RNAse inhibitor was added to the extracted RNA. The library construction was done by BGI, Hong Kong. rRNA was depleted with Ribo-Zero Magnetic kit. cDNA was generated with First Strand Master Mix and Superscript II. Second Strand Master Mix was used consecutively. cDNA was combined with End Repair Mix and purified with Ampure XP Beads. Poly-A tails were added with A-Tailing Mix.

text: AcrB D408A mutant (T>G 530662)

characteristic: genotype

text: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

characteristic: strain

text: D408A 1


E-MTAB-5573:D408A 2

tag: attribute

text: The University of Birmingham

characteristic: INSDC center name

text: public

text: E-MTAB-5573:D408A 2

text: ArrayExpress

text: AcrB D408A mutant (T>G 530662)

text: D408A 2


E-MTAB-5573:D408A 3

text: The University of Birmingham

characteristic: INSDC first public

text: public

text: E-MTAB-5573:D408A 3

text: ArrayExpress

text: AcrB D408A mutant (T>G 530662)

text: D408A 3


E-MTAB-5573:Wildtype 1

text: The University of Birmingham

characteristic: INSDC last update

text: public

text: E-MTAB-5573:Wildtype 1

text: ArrayExpress

text: wild type genotype

text: Wildtype 1


E-MTAB-5573:Wildtype 2

text: The University of Birmingham

text: public

characteristic: INSDC status

text: E-MTAB-5573:Wildtype 2

text: ArrayExpress

text: wild type genotype

text: Wildtype 2


E-MTAB-5573:Wildtype 3

text: The University of Birmingham

text: public

characteristic: SRA accession

text: E-MTAB-5573:Wildtype 3

text: ArrayExpress

text: wild type genotype

text: Wildtype 3


text: public

tag: Namespace:UNIVERSITY OF LA ROCHELLE - UMR 7266 CNRS LIENSS

characteristic: Submitter Id

characteristic: collection date

text: Draft genome sequence of the iridescent marine bacterium Cellulophaga lytica CECT 8139

text: Red anemone (Actinia equine) surface

characteristic: environment (biome)

text: Anemone surface

characteristic: environment (feature)

text: Anemone Surface

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Cellulophaga lytica

text: Bacteridescence

characteristic: project name

text: Cellulophaga lytica

text: Hiseq 2000 Illumina

characteristic: sequencing method


Larvae enrichment culture

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: gozbayram

characteristic: INSDC center name

text: public

text: Larvae enrichment culture

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Microbial Communities in the Midgut and Hindgut of Pachnoda marginata

characteristic: title


Leaf hindgut 2

text: gozbayram

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Leaf hindgut 2

characteristic: Submitter Id

text: uncultured bacterium

text: uncultured bacterium


Leaf hindgut 5

text: gozbayram

text: public

text: Leaf hindgut 5

text: uncultured bacterium

text: uncultured bacterium


Leaf hindgut 7

text: gozbayram

text: public

text: Leaf hindgut 7

text: uncultured bacterium

text: uncultured bacterium


Leaf midgut 3

text: gozbayram

text: public

text: Leaf midgut 3

text: uncultured bacterium

text: uncultured bacterium


Leaf midgut 6

text: gozbayram

text: public

text: Leaf midgut 6

text: uncultured bacterium

text: uncultured bacterium


Soil 2

text: gozbayram

text: public

text: Soil 2

text: uncultured bacterium

text: uncultured bacterium


Straw hindgut 1

text: gozbayram

text: public

text: Straw hindgut 1

text: uncultured bacterium

text: uncultured bacterium


Straw hindgut 2

text: gozbayram

text: public

text: Straw hindgut 2

text: uncultured bacterium

text: uncultured bacterium


Straw hindgut 3

text: gozbayram

text: public

text: Straw hindgut 3

text: uncultured bacterium

text: uncultured bacterium


Straw midgut 1

text: gozbayram

text: public

text: Straw midgut 1

text: uncultured bacterium

text: uncultured bacterium


Straw midgut 3

text: gozbayram

text: public

text: Straw midgut 3

text: uncultured bacterium

text: uncultured bacterium


text: University of Antwerp, Belgium

text: public

tag: Namespace:University of Antwerp, Belgium

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: wild felidae

characteristic: host scientific name

characteristic: isolate

text: gastric mucosa

characteristic: isolation source

text: Helicobacter acinonychis

text: Helicobacter acinonychis

text: Helicobacter acinonychis strains isolated from the gastric mucosa of wild felines


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Antwerp, Belgium

text: public

text: Germany

text: not provided

text: wild felidae

text: gastric mucosa

text: Helicobacter acinonychis

text: Helicobacter acinonychis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Antwerp, Belgium

text: public

text: Thailand

text: not provided

text: wild felidae

text: gastric mucosa

text: Helicobacter acinonychis

text: Helicobacter acinonychis


text: University of Antwerp, Belgium

characteristic: INSDC center name

text: public

text: Germany

text: not provided

text: Europe

text: gastric mucosa

text: Helicobacter acinonychis

characteristic: organism

text: Helicobacter acinonychis


characteristic: INSDC first public

text: public

tag: Namespace:Centre for Organismal Studies Heidelberg

text: Cochlearia and Ionopsidium WGS reads generated to study the evolutionary history of the genus Cochlearia

characteristic: description

text: Cochlearia pyrenaica

text: Cochlearia pyrenaica

text: Cochlearia pyrenaica

characteristic: title


text: Centre for Organismal Studies Heidelberg

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Cochlearia tatrae

text: Cochlearia tatrae

text: Cochlearia tatrae


text: public

characteristic: Submitter Id

text: Cochlearia macrorrhiza

text: Cochlearia macrorrhiza

text: Cochlearia macrorrhiza


text: public

text: Cochlearia excelsa

text: Cochlearia excelsa

text: Cochlearia excelsa


text: public

text: Cochlearia borzaeana

text: Cochlearia borzaeana

text: Cochlearia borzaeana


text: public

text: Cochlearia pyrenaica

text: Cochlearia pyrenaica

text: Cochlearia pyrenaica


text: public

text: Cochlearia groenlandica

text: Cochlearia groenlandica

text: Cochlearia groenlandica


text: public

text: Cochlearia danica

text: Cochlearia danica

text: Cochlearia danica


text: public

text: Cochlearia aestuaria

text: Cochlearia aestuaria

text: Cochlearia aestuaria


text: public

text: Cochlearia anglica

text: Cochlearia anglica

text: Cochlearia anglica


text: public

text: Cochlearia officinalis

text: Cochlearia officinalis

text: Cochlearia officinalis


text: public

text: Cochlearia polonica

text: Cochlearia polonica

text: Cochlearia polonica


text: public

text: Ionopsidium abulense

text: Ionopsidium abulense

text: Ionopsidium abulense


text: public

text: Cochlearia micacea

text: Cochlearia micacea

text: Cochlearia micacea


text: public

text: Ionopsidium acaule

text: Ionopsidium acaule

text: Ionopsidium acaule


text: public

text: Cochlearia islandica

text: Cochlearia islandica

text: Cochlearia islandica


text: public

text: Cochlearia and Ionopsidium WGS reads generated to study the evolutionary history of the genus Cochlearia history of the genus Cochlearia

text: Cochlearia tridactylites

text: Cochlearia tridactylites

text: Cochlearia tridactylites


text: public

text: Cochlearia tridactylites

text: Cochlearia tridactylites

text: Cochlearia tridactylites


text: public

text: Cochlearia tatrae

text: Cochlearia tatrae

text: Cochlearia tatrae


text: public

text: Ionopsidium megalospermum

text: Ionopsidium megalospermum

text: Ionopsidium megalospermum


text: University of Antwerp, Belgium

text: public

characteristic: collection date

text: Finland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Canis Lupus domesticus

text: gastric mucosa

text: Helicobacter salomonis

text: Helicobacter salomonis

text: Helicobacter salomonis strains isolated from the canine stomach


text: University of Antwerp, Belgium

text: public

text: Belgium

text: healthy

text: Felis Catus

characteristic: host scientific name

characteristic: isolate

text: gastric mucosa

characteristic: isolation source

text: Helicobacter heilmannii

text: Helicobacter heilmannii

text: Helicobacter heilmannii isolated from the feline stomach


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Antwerp, Belgium

text: public

text: Belgium

text: healthy

text: Felis catus domesticus

text: gastric mucosa

text: Helicobacter ailurogastricus

text: Helicobacter ailurogastricus

text: Helicobacter ailurogastricus isolated from the stomach of stray cats


characteristic: External Id

text: University of Antwerp, Belgium

characteristic: INSDC center name

text: public

text: Slovenia

text: not provided

text: Felis Catus

text: gastric mucosa

text: Helicobacter baculiformis

characteristic: organism

text: Helicobacter baculiformis

text: Helicobacter baculifomis isolated from the stomach of cats


text: University of Antwerp, Belgium

characteristic: INSDC first public

text: public

text: Belgium

text: not provided

text: Canis Lupus domesticus

text: gastric mucosa

text: Helicobacter cynogastricus

text: Helicobacter cynogastricus

text: Helicobacter cynogastricus JKM4 isolated from the canine stomach

characteristic: title


text: University of Antwerp, Belgium

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Finland

text: not provided

text: Canis Lupus Domesticus

text: gastric mucosa

text: Helicobacter bizzozeronii

text: Helicobacter bizzozeronii

text: Helicobacter bizzozeronii isolated from the stomach of dogs


text: University of Antwerp, Belgium

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Belgium

text: not provided

text: Canis Lupus domesticus

text: gastric mucosa

text: Helicobacter felis

text: Helicobacter felis

text: Helicobacter felis isolated from the gastric mucosa of dogs


text: University of Antwerp, Belgium

text: public

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo Sapiens

text: blood

text: Helicobacter cinaedi

text: Helicobacter cinaedi

text: Helicobacter cinaedi


text: University of Antwerp, Belgium

text: public

text: Sweden

text: not provided

characteristic: host health state

text: Canis Lupus Domesticus

characteristic: host scientific name

text: intestines

text: Helicobacter cinaedi

text: Helicobacter cinaedi

text: Helicobacter cinaedi


text: University of Antwerp, Belgium

text: public

text: USA

text: not provided

text: Ratus ratus

characteristic: isolate

text: intestines

characteristic: isolation source

text: Helicobacter muridarum

text: Helicobacter muridarum

text: Helicobacter muridarum


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:University Medical Center Hamburg-Eppendorf

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: adeno-associated viral display peptide library