text: OREGON STATE UNIVERS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5540:Stem-xylem-short-term-salt-replicate-1

text: ArrayExpress

text: black cottonwood

text: Protocols: Three individual plants were used per treatment as biological replicates. At sampling stage the plants had 15-17 stem internodes. The first two fully expanded leaves stem (internodes 5-7) and the corresponding stem internodes were selected for sampling. The major veins were removed from leaves and flash frozen in liquid nitrogen. The bark was peeled off from stem internodes and the stem xylem was split tangentially and flash frozen in liquid nitrogen. Fibrous roots (diameter less than 2mm) were subjected to a quick pressure wash with water to remove soil and flash frozen in liquid nitrogen. All samples were stored at -80 degrees C before RNA extraction. In summary, the three tissues sampled were: (1) mature leaf, (2) stem xylem and (3) root P. trichocarpa Nisqually-1 cuttings (2 inches long) obtained from approximately 12 year old field grown trees (Steve Strauss - Forest Ecosystem and Society field plantation in Corvallis, OR) were used to establish plants in 1 gallon pots containing Sungro Horticulture MM840 soil mix (http://www.sungro.com), under greenhouse conditions during late spring and summer of 2013. The plants were watered every 2 days to field capacity and fertilized weekly (20-20-20, N-P-K Ferti-lome soluble plant fertilizer, 1.5g per L, 300ml per plant). The plants were grown in the greenhouse for 8 weeks before being transferred to a growth chamber (12 h day/night cycle, maximum light intensity of 300 µmol m−2 s−1, temperature of 27 °C and 60% relative humidity). The plants were acclimated under growth chamber conditions for 2 weeks prior to treatments. Control: Plants were watered every 2 to 3 days. Growth chamber conditions (12 h day/night cycle, maximum light intensity of 300 µmol m−2 s−1, temperature of 27 °C and 60% relative humidity). Sampling was carried out 24 hours after watering at mid light period (6-7h after the beginning of light period). Short-term drought: Water deficit conditions were imposed on plants by withholding water. Growth chamber conditions (12 h day/night cycle, maximum light intensity of 300 µmol m−2 s−1, temperature of 27 °C and 60% relative humidity). Sampling was carried out at initial signs of wilting (volumetric soil water content 0.02-0.03 m3/m3, 5 days after withholding water) at mid light period (6-7h after the beginning of the light period). Prolonged drought: After initial wilting (volumetric soil water content 0.02-0.03 m3/m3, 5 days after withholding water), the soil moisture was maintained at 0.02-0.03 m3/m3 by limited watering (3 to 4 times a day 25-50 ml) for 7 days. During this period the plants went through wilting cycles but were not allowed to wilt to an extent to sustain any leaf damage. Sampling was carried out 12 days after withholding water (7 days after initial wilting), at mid light period (6-7h after the beginning of light period). Short-term heat: Heat stress was imposed by increasing the temperature to 39 degrees C, starting mid dark period (6h after the beginning of the dark period). Growth chamber conditions (12 h day/night cycle, maximum light intensity of 300 µmol m−2 s−1, temperature of 39 °C and 60% relative humidity). Sampling was carried out 12h after increasing the temperature at mid light period (6h after the beginning of the light period). Prolonged heat: Heat stress was imposed by increasing the temperature to 39 degrees C mid light period (6h after the beginning of the light period) and maintained at 39 degrees C for 7 days. Growth chamber conditions (12 h day/night cycle, maximum light intensity of 300 µmol m−2 s−1, temperature of 39 °C and 60% relative humidity). Sampling was carried out 7 days after increasing the temperature, at mid light period (6h after the beginning of the light period). Short-term salt: Plants were watered to field capacity and salinity stress was imposed by adding 400ml of 100mM NaCl to the soil at mid light period (6h after the beginning of the light period). The pots were placed in pot saucers to hold the excess salt solution. Growth chamber conditions (12 h day/night cycle, maximum light intensity of 300 µmol m−2 s−1, temperature of 27 °C and 60% relative humidity). Sampling was carried out 24h after adding salt, at mid light period (6h after the beginning of the light period). Prolonged salt: Plants were watered to field capacity and salinity stress was imposed by adding 400ml of 100mM NaCl to the soil at mid light period (6h after the beginning of the light period). The pots were placed in pot saucers to hold the excess salt solution). Growth chamber conditions (12 h day/night cycle, maximum light intensity of 300 µmol m−2 s−1, temperature of 27 °C and 60% relative humidity). The plants were maintained for 7 days with replenishment of 100mM NaCl in the pot saucer every 2 days. Sampling was carried out 7 days after imposing salt stress, at mid light period (6h after the beginning of the light period). Short-term cold: Cold stress was imposed by reducing the temperature to 12 degrees C during the light period and 4 degrees C during the dark period and. Growth chamber conditions (12 h day/night cycle, maximum light intensity of 300 µmol m−2 s−1, temperature of 4°C night/12°C day, and 60% relative humidity). Sampling was carried out 24h after reducing the temperature, at mid light period (6h after the beginning of the light period). Prolonged cold: Cold stress was imposed by reducing the temperature to 12 degrees C during the light period and 4 degrees C during the dark period and. Growth chamber conditions (12 h day/night cycle, maximum light intensity of 300 µmol m−2 s−1, temperature of 4°C night/12°C day, and 60% relative humidity). Sampling was carried out 7 days after reducing the temperature, at mid light period (6h after the beginning of the light period). Tissue was ground to a powder in liquid nitrogen and suspended in ‘PureLink Plant RNA Reagent’ (Thermo Fisher Cat # 12322012) and total RNA was extracted following manufacturers protocol. The RNA was treated with DNAse using a TURBO DNA-free kit Reagent’ (Thermo Fisher Cat # AM1907), following manufacturer’s instructions. The DNA free RNA was purified using a Qiagen RNeasy mini kit following manufacturer’s protocol. The quality of RNA was evaluated using a NanoDrop spectrophotometer and an Agilent Bioanalyzer instrument. RNA-seq libraries were prepared using True-Seq kit (Illumina Inc.) according to the manufacture’s protocol.

text: LP.17 seventeen leaves visible stage

text: Populus trichocarpa

text: Populus trichocarpa

text: stem xylem

text: Populus trichocarpa


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OREGON STATE UNIVERS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5540:Stem-xylem-short-term-salt-replicate-2

tag: Namespace:OREGON STATE UNIVERS

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: black cottonwood

characteristic: common name

characteristic: cultivar

characteristic: description

text: LP.17 seventeen leaves visible stage

characteristic: developmental stage

text: Populus trichocarpa

characteristic: organism

text: Populus trichocarpa

text: stem xylem

characteristic: organism part

text: Populus trichocarpa

characteristic: title

type: has member


text: OREGON STATE UNIVERS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5540:Stem-xylem-short-term-salt-replicate-3

text: ArrayExpress

text: black cottonwood

text: LP.17 seventeen leaves visible stage

text: Populus trichocarpa

text: Populus trichocarpa

text: stem xylem

text: Populus trichocarpa


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MONTANA STATE UNIVERSITY

text: public

tag: Namespace:MONTANA STATE UNIVERSITY

characteristic: collection date

text: rainbow trout

text: Gastrointestinal Samples

text: Aquatic biome

characteristic: environment (biome)

text: Inlet

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Oncorhynchus mykiss

text: USDA-NIFA

characteristic: project name

text: Oncorhynchus mykiss

text: Sanger

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CURTIN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:CURTIN UNIVERSITY

characteristic: Submitter Id

text: costal

text: human oral

text: human oral

text: Australia

text: human-oral

characteristic: humam oral environmental package

text: metagenome

text: human oral metagenome

characteristic: organism

text: Chinese Microbiome

text: human oral metagenome

text: Illumina

text: newly-arrived Long-term

characteristic: time in au

text: Chinese Study


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMB - UNIVERSITY OF QUEENSLAND

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:IMB - UNIVERSITY OF QUEENSLAND

text: Sequencing data (illumina Miseq 2000, paired end) of wildtype Streptococcus pneumoniae and small colony variants(SCV) Streptococcus pneumoniae

characteristic: description

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Wildtype and small colony variants (SCV) of Streptococcus pneumoniae variants

characteristic: title


text: ANAND

text: public

text: water buffalo

characteristic: common name

text: Bubalus bubalis

text: Bubalus bubalis

text: Meta-transcriptome Analysis


text: public

tag: Namespace:Institut d'Investigacio Sanitaria de Palma

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: human

characteristic: host scientific name

characteristic: isolate

text: CF respiratory sample

characteristic: isolation source

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institut d'Investigacio Sanitaria de Palma

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Australia

text: diseased

text: human

text: CF respiratory sample

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: Spain

text: diseased

text: human

text: CF respiratory sample

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa


text: UNIBE-IG

text: public

characteristic: INSDC status

text: dog

characteristic: common name

text: Heideterrier - female

characteristic: description

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Heideterrier

characteristic: title


E-MTAB-5546:Placebo 1

text: public

text: E-MTAB-5546:Placebo 1

tag: Namespace:Department of Veterinary Population Medicine,  University of Minnesota, Twin Cities.

text: ArrayExpress

characteristic: broker name

text: Protocols: Stool samples were collected into 1.7ml RNase/DNase-free tubes (Catalog #: C-2170, Denville Scientific, Holliston, MA, USA) at time points accordingly. The fecal samples were immediately frozen on dry ice and then stored at -80 °C Mice received morphine and pellet implantation method as described(Bryant et al. 1988). Using this method, plasma levels of morphine are in the 0.6-2.0-microg/ml range (range seen in opioid abusers and patients on opioids for moderate to severe pain). Furthermore, this model is commonly used in the study of opiate dependence and addiction(Bryant et al. 1988). Briefly, placebo or 25 mg morphine were inserted in a small pocket created by a small skin incision on the animal’s dorsal side; incisions were closed using surgical wound clips (Stoelting, 9 mm Stainless Steel, Wooddale, IL). DNA extractions from fecal matters were carried out using the PowerSoil DNA isolation kit (Catalog #: 12888-100, MO BIO Laboratories, Carlsbad, CA, USA). All extracted DNA samples were stored at -80°C until amplification. Fecal DNA samples (25 ng) were used as template for PCR amplification of the V4 region of the 16S rRNA gene. Degenerate primer sets were designed with Illumina index sequences on the 5 end of the reverse primer, which were specific to each fecal DNA sample and allowed for multiplexed sequencing. Primers also contained Illumina PCR primer sequences (reverse primer) and Illumina TruSeq Universal Adapter sequences (forward primers) for library creation. 1) Primer Sequences (16S-specific portion in bold) Meta_V4_515F: TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGGTGCCAGCMGCCGCGGTAA Meta_V4_806R: GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGGACTACHVGGGTWTCTAAT The indexing primers are as follows. This step adds both the index and the flowcell adapters. [i5] and [i7] refer to the index sequence codes used by Illumina. The p5 and p7 flow cell adapters are in bold. Forward indexing primer: AATGATACGGCGACCACCGAGATCTACAC[i5]TCGTCGGCAGCGTC Reverse indexing primer: CAAGCAGAAGACGGCATACGAGAT[i7]GTCTCGTGGGCTCGG 2) Cycling Conditions -PCR reactions are performed using KAPA HiFidelity Hot Start Polymerase PCR 1 (using the Meta_V4_515F/Meta_V4_806R primer pair) 95C - 5 minutes 20 cycles of: 98C - 20 seconds 55C - 15 seconds 72C - 1 minute Hold at 4C -After the first round of amplification, PCR 1 products are diluted 1:100 and 5 ul of 1:100 PCR 1 is used in the second PCR reaction. PCR 2 (using different combinations of forward and reverse indexing primers) 95C - 5 minutes 10 cycles of: 98C - 20 seconds 55C - 15 seconds 72C - 1 minute Hold at 4C

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

characteristic: strain

text: Placebo 1


E-MTAB-5546:Placebo 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Veterinary Population Medicine, University of Minnesota, Twin Cities.

characteristic: INSDC center name

text: public

text: E-MTAB-5546:Placebo 2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Placebo 2


E-MTAB-5546:Placebo 3

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5546:Placebo 3

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Placebo 3


E-MTAB-5546:Placebo 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-5546:Placebo 4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Placebo 4


E-MTAB-5546:Placebo 5

text: public

characteristic: INSDC status

text: E-MTAB-5546:Placebo 5

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Placebo 5


E-MTAB-5546:Placebo 6

text: public

text: E-MTAB-5546:Placebo 6

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Placebo 6

characteristic: title


E-MTAB-5546:Placebo 7

text: public

text: E-MTAB-5546:Placebo 7

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Placebo 7


E-MTAB-5546:Placebo 8

text: public

text: E-MTAB-5546:Placebo 8

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

text: Placebo 8


E-MTAB-5546:Morphine 1

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5546:Morphine 1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

characteristic: strain

text: Morphine 1


E-MTAB-5546:Morphine 2

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5546:Morphine 2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Morphine 2


E-MTAB-5546:Morphine 3

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5546:Morphine 3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Morphine 3


E-MTAB-5546:Morphine 4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5546:Morphine 4

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Morphine 4


E-MTAB-5546:Morphine 5

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-5546:Morphine 5

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Morphine 5


E-MTAB-5546:Morphine 6

text: public

characteristic: INSDC status

text: E-MTAB-5546:Morphine 6

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Morphine 6


E-MTAB-5546:Morphine 7

text: public

text: E-MTAB-5546:Morphine 7

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Morphine 7

characteristic: title


E-MTAB-5546:Morphine 8

text: public

text: E-MTAB-5546:Morphine 8

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: Morphine 8


E-MTAB-5550:day0 Morphine1

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day0 Morphine1

tag: Namespace:University of Minnesota, Twin Cities

text: ArrayExpress

text: Protocols: Stool samples were collected into 1.7ml RNase/DNase-free tubes (Catalog #: C-2170, Denville Scientific, Holliston, MA, USA) at time points accordingly. The fecal samples were immediately frozen on dry ice and then stored at -80 °C Mice received morphine and pellet implantation method as described(Bryant et al. 1988). Using this method, plasma levels of morphine are in the 0.6-2.0-microg/ml range (range seen in opioid abusers and patients on opioids for moderate to severe pain). Furthermore, this model is commonly used in the study of opiate dependence and addiction(Bryant et al. 1988). Briefly, placebo or 25 mg morphine or 30 mg naltrexone pellets (National Institutes of Health [NIH]/National Institute on Drug Abuse [NIDA], Bethesda, MD) were inserted in a small pocket created by a small skin incision on the animal’s dorsal side; incisions were closed using surgical wound clips (Stoelting, 9 mm Stainless Steel, Wooddale, IL). DNA extractions from fecal matters were carried out using the PowerSoil DNA isolation kit (Catalog #: 12888-100, MO BIO Laboratories, Carlsbad, CA, USA). All extracted DNA samples were stored at -80°C until amplification. Fecal DNA samples (25 ng) were used as template for PCR amplification of the V4 region of the 16S rRNA gene. Degenerate primer sets were designed with Illumina index sequences on the 5 end of the reverse primer, which were specific to each fecal DNA sample and allowed for multiplexed sequencing. Primers also contained Illumina PCR primer sequences (reverse primer) and Illumina TruSeq Universal Adapter sequences (forward primers) for library creation. 1) Primer Sequences (16S-specific portion in bold) Meta_V4_515F: TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGGTGCCAGCMGCCGCGGTAA Meta_V4_806R: GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGGACTACHVGGGTWTCTAAT The indexing primers are as follows. This step adds both the index and the flowcell adapters. [i5] and [i7] refer to the index sequence codes used by Illumina. The p5 and p7 flow cell adapters are in bold. Forward indexing primer: AATGATACGGCGACCACCGAGATCTACAC[i5]TCGTCGGCAGCGTC Reverse indexing primer: CAAGCAGAAGACGGCATACGAGAT[i7]GTCTCGTGGGCTCGG 2) Cycling Conditions -PCR reactions are performed using KAPA HiFidelity Hot Start Polymerase PCR 1 (using the Meta_V4_515F/Meta_V4_806R primer pair) 95C - 5 minutes 20 cycles of: 98C - 20 seconds 55C - 15 seconds 72C - 1 minute Hold at 4C -After the first round of amplification, PCR 1 products are diluted 1:100 and 5 ul of 1:100 PCR 1 is used in the second PCR reaction. PCR 2 (using different combinations of forward and reverse indexing primers) 95C - 5 minutes 10 cycles of: 98C - 20 seconds 55C - 15 seconds 72C - 1 minute Hold at 4C

text: wild type genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

text: day0 Morphine1


E-MTAB-5550:day0 Morphine2

characteristic: ENA-LAST-UPDATE

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day0 Morphine2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

characteristic: strain

text: day0 Morphine2


E-MTAB-5550:day0 Morphine3

characteristic: External Id

text: University of Minnesota, Twin Cities

characteristic: INSDC center name

text: public

text: E-MTAB-5550:day0 Morphine3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 Morphine3


E-MTAB-5550:day0 Morphine4

text: University of Minnesota, Twin Cities

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5550:day0 Morphine4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 Morphine4


E-MTAB-5550:day1 Morphine1

characteristic: ENA-CHECKLIST

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day1 Morphine1

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Morphine1


E-MTAB-5550:day1 Morphine2

characteristic: ENA-FIRST-PUBLIC

text: University of Minnesota, Twin Cities

characteristic: INSDC last update

text: public

text: E-MTAB-5550:day1 Morphine2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Morphine2


E-MTAB-5550:day1 Morphine3

text: University of Minnesota, Twin Cities

text: public

characteristic: INSDC status

text: E-MTAB-5550:day1 Morphine3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Morphine3


E-MTAB-5550:day1 Morphine4

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day1 Morphine4

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Morphine4

characteristic: title


E-MTAB-5550:day2 Morphine1

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day2 Morphine1

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 Morphine1


E-MTAB-5550:day2 Morphine2

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day2 Morphine2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

text: day2 Morphine2


E-MTAB-5550:day2 Morphine3

characteristic: ENA-LAST-UPDATE

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day2 Morphine3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

characteristic: strain

text: day2 Morphine3


E-MTAB-5550:day2 Morphine4

characteristic: External Id

text: University of Minnesota, Twin Cities

characteristic: INSDC center name

text: public

text: E-MTAB-5550:day2 Morphine4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 Morphine4


E-MTAB-5550:day3 Morphine1

text: University of Minnesota, Twin Cities

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5550:day3 Morphine1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Morphine1


E-MTAB-5550:day3 Morphine2

characteristic: ENA-CHECKLIST

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day3 Morphine2

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Morphine2


E-MTAB-5550:day3 Morphine3

characteristic: ENA-FIRST-PUBLIC

text: University of Minnesota, Twin Cities

characteristic: INSDC last update

text: public

text: E-MTAB-5550:day3 Morphine3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Morphine3


E-MTAB-5550:day3 Morphine4

text: University of Minnesota, Twin Cities

text: public

characteristic: INSDC status

text: E-MTAB-5550:day3 Morphine4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Morphine4


E-MTAB-5550:day0 morphine+naltrexone1

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day0 morphine+naltrexone1

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 morphine+naltrexone1

characteristic: title


E-MTAB-5550:day0 morphine+naltrexone2

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day0 morphine+naltrexone2

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 morphine+naltrexone2


E-MTAB-5550:day0 morphine+naltrexone3

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day0 morphine+naltrexone3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

text: day0 morphine+naltrexone3


E-MTAB-5550:day0 morphine+naltrexone4

characteristic: ENA-LAST-UPDATE

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day0 morphine+naltrexone4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

characteristic: strain

text: day0 morphine+naltrexone4


E-MTAB-5550:day1 Morphine+naltrexone1

characteristic: External Id

text: University of Minnesota, Twin Cities

characteristic: INSDC center name

text: public

text: E-MTAB-5550:day1 Morphine+naltrexone1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Morphine+naltrexone1


E-MTAB-5550:day1 Morphine+naltrexone2

text: University of Minnesota, Twin Cities

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5550:day1 Morphine+naltrexone2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Morphine+naltrexone2


E-MTAB-5550:day1 Morphine+naltrexone3

characteristic: ENA-CHECKLIST

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day1 Morphine+naltrexone3

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Morphine+naltrexone3


E-MTAB-5550:day1 Morphine+naltrexone4

characteristic: ENA-FIRST-PUBLIC

text: University of Minnesota, Twin Cities

characteristic: INSDC last update

text: public

text: E-MTAB-5550:day1 Morphine+naltrexone4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Morphine+naltrexone4


E-MTAB-5550:day2 Morphine+naltrexone1

text: University of Minnesota, Twin Cities

text: public

characteristic: INSDC status

text: E-MTAB-5550:day2 Morphine+naltrexone1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 Morphine+naltrexone1


E-MTAB-5550:day2 Morphine+naltrexone2

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day2 Morphine+naltrexone2

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 Morphine+naltrexone2

characteristic: title


E-MTAB-5550:day2 Morphine+naltrexone3

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day2 Morphine+naltrexone3

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 Morphine+naltrexone3


E-MTAB-5550:day2 Morphine+naltrexone4

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day2 Morphine+naltrexone4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

text: day2 Morphine+naltrexone4


E-MTAB-5550:day3 Morphine+naltexone1

characteristic: ENA-LAST-UPDATE

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day3 Morphine+naltexone1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

characteristic: strain

text: day3 Morphine+naltexone1


E-MTAB-5550:day3 Morphine+naltrexone2

characteristic: External Id

text: University of Minnesota, Twin Cities

characteristic: INSDC center name

text: public

text: E-MTAB-5550:day3 Morphine+naltrexone2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Morphine+naltrexone2


E-MTAB-5550:day3 Morphine+naltrexone3

text: University of Minnesota, Twin Cities

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5550:day3 Morphine+naltrexone3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Morphine+naltrexone3


E-MTAB-5550:day3 Morphine+naltrexone4

characteristic: ENA-CHECKLIST

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day3 Morphine+naltrexone4

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Morphine+naltrexone4


E-MTAB-5550:day0 naltrexone1

characteristic: ENA-FIRST-PUBLIC

text: University of Minnesota, Twin Cities

characteristic: INSDC last update

text: public

text: E-MTAB-5550:day0 naltrexone1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 naltrexone1


E-MTAB-5550:day0 naltrexone2

text: University of Minnesota, Twin Cities

text: public

characteristic: INSDC status

text: E-MTAB-5550:day0 naltrexone2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 naltrexone2


E-MTAB-5550:day0 naltrexone3

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day0 naltrexone3

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 naltrexone3

characteristic: title


E-MTAB-5550:day0 naltrexone4

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day0 naltrexone4

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 naltrexone4


E-MTAB-5550:day1 naltrexone1

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day1 naltrexone1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

text: day1 naltrexone1


E-MTAB-5550:day1 naltrexone2

characteristic: ENA-LAST-UPDATE

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day1 naltrexone2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

characteristic: strain

text: day1 naltrexone2


E-MTAB-5550:day1 naltrexone3

characteristic: External Id

text: University of Minnesota, Twin Cities

characteristic: INSDC center name

text: public

text: E-MTAB-5550:day1 naltrexone3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 naltrexone3


E-MTAB-5550:day1 naltrexone4

text: University of Minnesota, Twin Cities

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5550:day1 naltrexone4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 naltrexone4


E-MTAB-5550:day2 naltexone1

characteristic: ENA-CHECKLIST

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day2 naltexone1

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 naltexone1


E-MTAB-5550:day2 naltrexone2

characteristic: ENA-FIRST-PUBLIC

text: University of Minnesota, Twin Cities

characteristic: INSDC last update

text: public

text: E-MTAB-5550:day2 naltrexone2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 naltrexone2


E-MTAB-5550:day2 naltrexone3

text: University of Minnesota, Twin Cities

text: public

characteristic: INSDC status

text: E-MTAB-5550:day2 naltrexone3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 naltrexone3


E-MTAB-5550:day2 naltrexone4

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day2 naltrexone4

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 naltrexone4

characteristic: title


E-MTAB-5550:day3 naltrexone1

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day3 naltrexone1

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 naltrexone1


E-MTAB-5550:day3 naltrexone2

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day3 naltrexone2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

text: day3 naltrexone2


E-MTAB-5550:day3 naltrexone3

characteristic: ENA-LAST-UPDATE

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day3 naltrexone3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

characteristic: strain

text: day3 naltrexone3


E-MTAB-5550:day3 naltrexone4

characteristic: External Id

text: University of Minnesota, Twin Cities

characteristic: INSDC center name

text: public

text: E-MTAB-5550:day3 naltrexone4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 naltrexone4


E-MTAB-5550:day0 Placebo1

text: University of Minnesota, Twin Cities

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5550:day0 Placebo1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 Placebo1


E-MTAB-5550:day0 Placebo2

characteristic: ENA-CHECKLIST

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day0 Placebo2

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 Placebo2


E-MTAB-5550:day0 Placebo3

characteristic: ENA-FIRST-PUBLIC

text: University of Minnesota, Twin Cities

characteristic: INSDC last update

text: public

text: E-MTAB-5550:day0 Placebo3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 Placebo3


E-MTAB-5550:day0 Placebo4

text: University of Minnesota, Twin Cities

text: public

characteristic: INSDC status

text: E-MTAB-5550:day0 Placebo4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day0 Placebo4


E-MTAB-5550:day1 Placebo1

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day1 Placebo1

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Placebo1

characteristic: title


E-MTAB-5550:day1 Placebo2

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day1 Placebo2

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day1 Placebo2


E-MTAB-5550:day1 Placebo3

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day1 Placebo3

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

text: day1 Placebo3


E-MTAB-5550:day1 Placebo4

characteristic: ENA-LAST-UPDATE

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day1 Placebo4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

characteristic: strain

text: day1 Placebo4


E-MTAB-5550:day2 Placebo1

characteristic: External Id

text: University of Minnesota, Twin Cities

characteristic: INSDC center name

text: public

text: E-MTAB-5550:day2 Placebo1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 Placebo1


E-MTAB-5550:day2 Placebo2

text: University of Minnesota, Twin Cities

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5550:day2 Placebo2

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 Placebo2


E-MTAB-5550:day2 Placebo3

characteristic: ENA-CHECKLIST

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day2 Placebo3

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 Placebo3


E-MTAB-5550:day2 Placebo4

characteristic: ENA-FIRST-PUBLIC

text: University of Minnesota, Twin Cities

characteristic: INSDC last update

text: public

text: E-MTAB-5550:day2 Placebo4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day2 Placebo4


E-MTAB-5550:day3 Placebo1

text: University of Minnesota, Twin Cities

text: public

characteristic: INSDC status

text: E-MTAB-5550:day3 Placebo1

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Placebo1


E-MTAB-5550:day3 Placebo2

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day3 Placebo2

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Placebo2

characteristic: title


E-MTAB-5550:day3 Placebo3

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day3 Placebo3

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: Mus musculus domesticus

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

text: mouse gut metagenome

text: day3 Placebo3


E-MTAB-5550:day3 Placebo4

text: University of Minnesota, Twin Cities

text: public

text: E-MTAB-5550:day3 Placebo4

text: ArrayExpress

text: wild type genotype

text: Mus musculus domesticus

characteristic: host organism

text: mouse gut metagenome

text: mouse gut metagenome

text: feces

characteristic: organism part

text: mouse gut metagenome

text: day3 Placebo4


characteristic: ENA-LAST-UPDATE

text: University of Alaska Fairbanks

text: public

tag: Namespace:University of Alaska Fairbanks

text: ArrayExpress

text: Protocols: harvest cells during exponential growth Growth at 15C Nextera XT

text: Polaribacter sp. ALD11

characteristic: ecotype

text: 15 C

characteristic: growth condition

text: exponential

characteristic: growth phase

text: Polaribacter irgensii

text: Polaribacter irgensii

text: Polaribacter irgensii


characteristic: External Id

text: University of Alaska Fairbanks

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ArrayExpress

text: Protocols: harvest cells during stationary phase Growth at 15C Nextera XT

text: Polaribacter sp. ALD11

text: 15 C

text: stationary

text: Polaribacter irgensii

text: Polaribacter irgensii

text: Polaribacter irgensii


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Alaska Fairbanks

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: harvest cells during exponential growth Growth at 1C Nextera XT

text: Polaribacter sp. ALD11

text: 1 C

text: exponential

text: Polaribacter irgensii

text: Polaribacter irgensii

text: Polaribacter irgensii


text: University of Alaska Fairbanks

text: public

characteristic: INSDC status

text: ArrayExpress

text: Protocols: harvest cells during stationary phase Growth at 1C Nextera XT

characteristic: description

text: Polaribacter sp. ALD11

text: 1 C

text: stationary

text: Polaribacter irgensii

characteristic: organism

text: Polaribacter irgensii

text: Polaribacter irgensii

characteristic: title


text: University of Alaska Fairbanks

text: public

text: ArrayExpress

characteristic: broker name

text: Protocols: harvest cells during exponential growth Growth at 22C Nextera XT

text: Shewanella sp. ALD9

text: 22 C

text: exponential

text: Shewanella frigidimarina

text: Shewanella frigidimarina

text: Shewanella frigidimarina


characteristic: ENA-LAST-UPDATE

text: University of Alaska Fairbanks

text: public

text: ArrayExpress

text: Protocols: harvest cells during stationary phase Growth at 22C Nextera XT

text: Shewanella sp. ALD9

text: 22 C

text: stationary

text: Shewanella frigidimarina

text: Shewanella frigidimarina

text: Shewanella frigidimarina


text: University of Alaska Fairbanks

text: public

text: ArrayExpress

text: Protocols: harvest cells during exponential growth Growth at 4C Nextera XT

text: Shewanella sp. ALD9

characteristic: ecotype

text: 4 C

text: exponential

text: Shewanella frigidimarina

text: Shewanella frigidimarina

text: Shewanella frigidimarina


text: University of Alaska Fairbanks

text: public

text: ArrayExpress

text: Protocols: harvest cells during stationary phase Growth at 4C Nextera XT

text: Shewanella sp. ALD9

text: 4 C

characteristic: growth condition

text: stationary

text: Shewanella frigidimarina

text: Shewanella frigidimarina

text: Shewanella frigidimarina


text: EMBL EBI

text: public

tag: Namespace:EMBL EBI

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Wildtype replicate 1


characteristic: External Id

text: EMBL EBI

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Wildtype replicate 2


text: EMBL EBI

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mili Knockout (replicate 1)


text: EMBL EBI

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mili Knockout (replicate 2)


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: anonymized name

characteristic: depth

text: antarctic sand

text: TRUE

characteristic: elevation

text: polar desert biome

characteristic: env biome

text: cold temperature habitat

characteristic: env feature

text: soil

characteristic: env package

text: sand

text: TRUE

characteristic: extracted DNA avail now

text: Antarctica:Antarctic Dry Valley system

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: sand metagenome

characteristic: ph

text: Missing: Not provided

text: LBNL

text: TRUE

text: TRUE

characteristic: public

text: rocky sand

characteristic: sample type

text: sand metagenome

characteristic: slope aspect

characteristic: slope gradient

text: New Zealand Terrestrial Antarctic Biocomplexity survey (NZTABS)

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: antarctic sand

characteristic: description

text: TRUE

text: polar desert biome

text: cold temperature habitat

text: soil

text: sand

text: TRUE

text: Antarctica:Antarctic Dry Valley system

text: sand metagenome

characteristic: organism

text: Missing: Not provided

text: LBNL

text: TRUE

text: TRUE

text: rocky sand

text: sand metagenome

characteristic: title

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


text: UCSDMI

text: public

characteristic: anonymized name

characteristic: depth

text: antarctic sand

text: TRUE

characteristic: elevation

text: polar desert biome

characteristic: env biome

text: cold temperature habitat

characteristic: env feature

text: soil

characteristic: env package

text: sand

text: TRUE

characteristic: extracted DNA avail now

text: Antarctica:Antarctic Dry Valley system

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: sand metagenome

characteristic: ph

text: Missing: Not provided

text: LBNL

text: TRUE

text: TRUE

characteristic: public

text: rocky sand

text: sand metagenome

text: Missing: Not provided

text: Missing: Not provide

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: antarctic sand

text: TRUE

text: polar desert biome

text: cold temperature habitat

text: soil

text: sand

text: TRUE

text: Antarctica:Antarctic Dry Valley system

text: sand metagenome

text: Missing: Not provided

text: LBNL

text: TRUE

text: TRUE

text: rocky sand

characteristic: sample type

text: sand metagenome

text: Missing: Not provided

characteristic: slope aspect

text: Missing: Not provide

characteristic: slope gradient

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


text: UCSDMI

text: public

characteristic: anonymized name

text: Missing: Not provided

characteristic: depth

text: antarctic sand

characteristic: description

text: TRUE

characteristic: elevation

text: polar desert biome

characteristic: env biome

text: cold temperature habitat

characteristic: env feature

text: soil

characteristic: env package

text: sand

text: TRUE

characteristic: extracted DNA avail now

text: Antarctica:Antarctic Dry Valley system

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: sand metagenome

characteristic: organism

text: Missing: Not provided

text: Missing: Not provided

text: LBNL

text: TRUE

text: TRUE

text: rocky sand

text: sand metagenome

text: Missing: Not provided

text: Missing: Not provide

characteristic: title

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: carcass

text: TRUE

text: polar desert biome

text: cold temperature habitat

text: host-associated

text: carcass

text: TRUE

text: Antarctica:Antarctic Dry Valley system

characteristic: longitude

text: metagenome

characteristic: ph

text: Missing: Not provided

text: LBNL

text: TRUE

text: TRUE

characteristic: public

text: carcass

text: metagenome

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


text: UCSDMI

text: public

characteristic: anonymized name

text: Missing: Not provided

characteristic: depth

text: antarctic sand

characteristic: description

text: TRUE

characteristic: elevation

text: polar desert biome

characteristic: env biome

text: cold temperature habitat

characteristic: env feature

text: soil

characteristic: env package

text: sand

text: TRUE

characteristic: extracted DNA avail now

text: Antarctica:Antarctic Dry Valley system

characteristic: geo loc name

characteristic: host subject id

text: sand metagenome

text: Missing: Not provided

text: Missing: Not provided

text: LBNL

text: TRUE

text: TRUE

text: rocky sand

characteristic: sample type

text: sand metagenome

characteristic: slope aspect

characteristic: slope gradient

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Stanford University, School of Medicine Departments of Medicine and Genetics

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: This study employed deidentified excess tissue specimens collected in the course of routine clinical care and was approved by the local institutional review board (IRB). Individual tumor glands composed of <10,000 adjacent cells were isolated from fresh colectomy specimens following EDTA treatment. DNA was isolated from individual glands by incubation in 15 µl of Tris-EDTA solution with Proteinase K solution (4 h at 56 °C), and reactions were boiled for 5 min. Agilent SureSelect Target Enrichment Kit

text: colorectal carcinoma

characteristic: disease

text: patient O

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tumor gland

characteristic: organism part

text: right side of tumor O

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Stanford University, School of Medicine Departments of Medicine and Genetics

text: public

text: ArrayExpress

text: human

characteristic: description

text: colorectal carcinoma

text: patient O

text: Homo sapiens

text: Homo sapiens

text: tumor gland

text: right side of tumor O

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: colorectal carcinoma

text: patient O

text: Homo sapiens

text: Homo sapiens

text: tumor gland

text: left side of tumor O

text: Homo sapiens

text: male


text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colorectal carcinoma

characteristic: disease

text: patient U

text: Homo sapiens

text: Homo sapiens

text: tumor gland

text: right side of tumor U

text: Homo sapiens

text: female


text: public

text: ArrayExpress

text: human

text: colorectal carcinoma

text: patient U

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tumor gland

characteristic: organism part

text: left side of tumor U

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: Protocols: This study employed deidentified excess tissue specimens collected in the course of routine clinical care and was approved by the local institutional review board (IRB). Individual tumor glands composed of <10,000 adjacent cells were isolated from fresh colectomy specimens following EDTA treatment. DNA was isolated from individual glands by incubation in 15 µl of Tris-EDTA solution with Proteinase K solution (4 h at 56 °C), and reactions were boiled for 5 min. illumina Nextera Rapid Capture Exome Kit

text: colorectal carcinoma

text: patient O

text: Homo sapiens

text: Homo sapiens

text: tumor gland

text: right side of tumor O

text: Homo sapiens

text: male

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

characteristic: description

text: normal

text: patient O

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal tissue adjacent to tumor O

text: Homo sapiens

text: male

text: ON


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Tumor tissue was collected separately from the right and left lesions of the mice LoVo and HCT116 cell lines were cultured under standard conditions (DMEM medium supplemented with 10% Fetal Bovine Serum). A single founding cell was cloned and expanded in vitro until it reached ~6M cells (a T75 flask). Two aliquots of ~1M cells were subcutaneously injected into opposite (right and left) flanks of a nude mouse (NSG mice for HCT117 and SCID mice for Lovo) and tumors were allowed to reach a size of ~1B cells (1cm3) before the animal was sacrificed. illumina Nextera Rapid Capture Expanded Exome Kit

text: colorectal carcinoma

text: polyclonal tissue culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: tumor cell

text: Homo sapiens


text: public

text: ArrayExpress

text: LoVo

text: human

text: Protocols: Tumor tissue was collected separately from the right and left lesions of the mice LoVo and HCT116 cell lines were cultured under standard conditions (DMEM medium supplemented with 10% Fetal Bovine Serum). A single founding cell was cloned and expanded in vitro until it reached ~6M cells (a T75 flask). Two aliquots of ~1M cells were subcutaneously injected into opposite (right and left) flanks of a nude mouse (NSG mice for HCT117 and SCID mice for Lovo) and tumors were allowed to reach a size of ~1B cells (1cm3) before the animal was sacrificed. illumina TruSeq Exome Capture Library Preparation Kit

text: colorectal carcinoma

characteristic: disease

text: polyclonal tissue culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: xenograft specimen

characteristic: organism part

text: Homo sapiens

text: xenograft in SCID mouse

characteristic: xenograft


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: colorectal carcinoma

text: tissue culture of single cell clone

text: clone 1

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: tumor cell

text: Homo sapiens


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: colorectal carcinoma

text: tissue culture of single cell clone

text: clone 1

text: Homo sapiens

text: Homo sapiens

text: xenograft specimen

text: right flank

characteristic: sampling site

text: Homo sapiens

characteristic: title

text: xenograft in NGS mouse


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

characteristic: description

text: colorectal carcinoma

text: tissue culture of single cell clone

text: clone 1

text: Homo sapiens

text: Homo sapiens

text: xenograft specimen

text: left flank

text: Homo sapiens

text: xenograft in NGS mouse


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: human

text: colorectal carcinoma

characteristic: disease

text: tissue culture of single cell clone

characteristic: growth condition

text: clone 3

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tumor cell

characteristic: organism part

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: colorectal carcinoma

text: tissue culture of single cell clone

text: clone 3

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: xenograft specimen

text: right flank

text: Homo sapiens

text: xenograft in NGS mouse

characteristic: xenograft


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: colorectal carcinoma

text: tissue culture of single cell clone

text: clone 3

text: Homo sapiens

text: Homo sapiens

text: xenograft specimen

text: left flank

characteristic: sampling site

text: Homo sapiens

characteristic: title

text: xenograft in NGS mouse


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: LoVo

characteristic: cell line

text: human

characteristic: common name

characteristic: description

text: colorectal carcinoma

text: tissue culture of single cell clone

text: Homo sapiens

text: Homo sapiens

text: xenograft specimen

text: right flank

text: Homo sapiens

text: xenograft in SCID mouse C


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: LoVo

text: human

text: colorectal carcinoma

characteristic: disease

text: tissue culture of single cell clone

characteristic: growth condition

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: xenograft specimen

characteristic: organism part

text: left flank

text: Homo sapiens

text: xenograft in SCID mouse C


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: LoVo

text: human

text: colorectal carcinoma

text: tissue culture of single cell clone

text: Homo sapiens

text: Homo sapiens

text: xenograft specimen

text: right flank

text: Homo sapiens

text: xenograft in SCID mouse D

characteristic: xenograft


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: LoVo

text: human

text: colorectal carcinoma

text: tissue culture of single cell clone

text: Homo sapiens

text: Homo sapiens

text: xenograft specimen

text: left flank

characteristic: sampling site

text: Homo sapiens

characteristic: title

text: xenograft in SCID mouse D


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

characteristic: Submitter Id

characteristic: broker name

characteristic: description

text: Neisseria

characteristic: genus

characteristic: isolate

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis

type: AMR curated data - CABBAGE

value: penicillin

value: susceptible

value: Neisseria meningitidis

value: cefotaxime

value: chloramphenicol

value: ciprofloxacin

value: rifampin


text: 29553330; 30687793; 32375989; 33770146

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

characteristic: External Id

text: OX

characteristic: INSDC center name

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: GBR

text: Neisseria

text: CSF

text: central nervous system

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

characteristic: ENA-CHECKLIST

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

characteristic: INSDC status

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

characteristic: SRA accession

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: CSF

text: central nervous system

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146; 34662348

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: 29553330; 30687793; 32375989; 33770146

text: OX

text: public

text: GBR

text: Neisseria

text: blood

text: blood

text: Neisseria meningitidis

text: Neisseria meningitidis

value: resistant


text: URMITE

text: public

text: Paraliobacillus ryukyuensis

text: Paraliobacillus ryukyuensis

characteristic: strain

text: Paraliobacillus ryukyuensis genome


text: University Hospital Galway

text: public

tag: Namespace:University Hospital Galway

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: Food

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Kentucky

text: Kentucky

characteristic: serovar

text: Subsp. I

characteristic: sub species

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

characteristic: isolate

text: Food

text: Salmonella enterica subsp. enterica serovar Infantis

text: Infantis

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ireland

text: Homo sapiens

text: Food

text: Salmonella enterica subsp. enterica serovar Derby

characteristic: organism

text: Derby

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ireland

text: Homo sapiens

text: Food

text: Salmonella enterica subsp. enterica serovar Hadar

text: Hadar

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: Food

text: Salmonella enterica subsp. enterica serovar Java

text: Java

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Food

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Anatum

text: Anatum

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: Solibacillus isronensis

text: Solibacillus isronensis

characteristic: strain

text: Bacterial strain of Culturomics project of Marseille

characteristic: title


characteristic: External Id

text: University Medical Center Groningen

characteristic: INSDC center name

text: public

tag: Namespace:University Medical Center Groningen

characteristic: Submitter Id

text: not provided

text: not provided

characteristic: country

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

text: ERASMUS MC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:ERASMUS MC

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

characteristic: tissue type

text: Gli1+ cells in bone marrow fibrosis (ThPO)


text: ERASMUS MC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Gli1+ cells in control bone marrow (empty vector)


CNRZ 920

characteristic: ENA-FIRST-PUBLIC

text: INRA GRIGNON

text: public

text: CNRZ 920

tag: Namespace:INRA GRIGNON

text: Brevibacterium aurantiacum

text: Brevibacterium aurantiacum

text: CNRZ 920

text: Draft genome sequence of Brevibacterium aurantiacum CNRZ 920


characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: Chryseobacterium sp. 6021061333

text: Chryseobacterium sp. 6021061333

text: Chryseobacterium phocaeence genome


text: UNIVERSITY OF BERGEN/DEPT. OF BIOLOGY

text: public

tag: Namespace:UNIVERSITY OF BERGEN/DEPT. OF BIOLOGY

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: Seawater

characteristic: isolation source

text: marine metagenome

text: marine metagenome


characteristic: External Id

text: UNIVERSITY OF BERGEN/DEPT. OF BIOLOGY

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Yes

text: Arctic Ocean

text: Ice

text: ice metagenome

text: ice metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: Functional Genomics Genter Zurich

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Functional Genomics Genter Zurich

text: Switzerland

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human patient

text: Blastobotrys raffinosifermentans

text: Blastobotrys raffinosifermentans


tag: attribute

text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ireland

text: Homo sapiens

text: Human

characteristic: organism

text: Infantis

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Paratyphi B

text: Paratyphi B

text: Subsp. I


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Kiambu

text: Kiambu

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Stanley

text: Stanley

text: Subsp. I

characteristic: title


text: University Hospital Galway

text: public

characteristic: INSDC status

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: SRA accession

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: organism

text: Typhimurium

characteristic: serovar

text: Subsp. I


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Schwarzengrund

text: Schwarzengrund

text: Subsp. I

characteristic: sub species


Mapped reads - 7.6

characteristic: External Id

text: The Arctic University of Norway (UiT)

text: public

text: Mapped reads - 7.6

tag: Namespace:The Arctic University of Norway (UiT)

text: Mapped transcriptome reads to assembled mitogenome from pH 7.6

characteristic: description

text: Anemonia viridis

text: Anemonia viridis

text: Mitogenome and mitotranscriptome of two Anemonia species


Mapped reads - 7.9

text: The Arctic University of Norway (UiT)

characteristic: INSDC center name

text: public

text: Mapped reads - 7.9

characteristic: Submitter Id

text: Mapped transcriptome reads to assembled mitogenome from pH 7.9

text: Anemonia viridis

text: Anemonia viridis


Mapped reads - 8.2

characteristic: ENA-CHECKLIST

text: The Arctic University of Norway (UiT)

text: public

text: Mapped reads - 8.2

text: Mapped transcriptome reads to assembled mitogenome from pH 8.2

text: Anemonia viridis

text: Anemonia viridis


Mapped reads - Ama

text: The Arctic University of Norway (UiT)

characteristic: INSDC first public

text: public

text: Mapped reads - Ama

text: Mapped transcriptome reads to assembled mitogenome

text: Anemonia majano

text: Anemonia majano


text: University Medical Center Groningen

characteristic: INSDC last update

text: public

text: not provided

characteristic: collection date

text: not provided

characteristic: country

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

characteristic: INSDC status

tag: Namespace:Research Programs Unit University of Helsinki

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: RNA from 6 polyps and 4 adjacent mucosa samples was isolated from 4 tumor-bearing mice (Lkb1FspKO/FspKO) and normal mucosa samples from 5 wild-type littermates. Total RNA from polyps and mucosa samples was extracted using RNAeasy plus kit (Qiagen). Libraries were constructed according to Illumina’s guidelines, using a Truseq Stranded Total RNA Library Prep Kit with Ribo-Zero rRNA removal kit.

text: Peutz-Jeghers syndrome

characteristic: disease

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: gastric mucosa

characteristic: organism part

text: fibroblast-specific Lkb1 knockout

characteristic: phenotype

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Research Programs Unit University of Helsinki

text: public

characteristic: SRA accession

text: ArrayExpress

text: house mouse

characteristic: description

text: Peutz-Jeghers syndrome

text: Mus musculus

characteristic: organism

text: Mus musculus

text: gastric mucosa

text: fibroblast-specific Lkb1 knockout

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: normal

text: Mus musculus

text: Mus musculus

text: gastric mucosa

text: wild type

text: Mus musculus


text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Peutz-Jeghers syndrome

characteristic: disease

text: Mus musculus

text: Mus musculus

text: polyp

text: fibroblast-specific Lkb1 knockout

text: Mus musculus


text: NEWCASTLE UNIVERSITY

text: public

tag: Namespace:NEWCASTLE UNIVERSITY

text: AACGCACGCTAG

characteristic: barcode

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: AACTCGTCGATG

text: Column

text: biofilter metagenome

text: biofilter metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: NEWCASTLE UNIVERSITY

text: public

text: AACTGTGCGTAC

text: Column

text: biofilter metagenome

text: biofilter metagenome


characteristic: ENA-LAST-UPDATE

text: NEWCASTLE UNIVERSITY

text: public

text: AAGAGATGTCGA

text: Column

text: biofilter metagenome

text: biofilter metagenome


characteristic: External Id

text: NEWCASTLE UNIVERSITY

text: public

text: AAGCTGCAGTCG

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

characteristic: SRA accession

text: AATCAGTCTCGT

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: AATCGTGACTCG

text: Column

characteristic: description

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACACACTATGGC

text: Column

text: biofilter metagenome

characteristic: organism

text: biofilter metagenome


characteristic: ENA-CHECKLIST

text: NEWCASTLE UNIVERSITY

text: public

text: ACACATGTCTAC

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

characteristic: INSDC center name

text: public

text: ACACGAGCCACA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

characteristic: INSDC first public

text: public

text: ACACGGTGTCTA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

characteristic: INSDC last update

text: public

text: ACACTAGATCCG

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

characteristic: Submitter Id

text: ACACTGTTCATG

text: Column Innoculant

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

characteristic: INSDC status

text: ACAGACCACTCA

text: Column Innoculant

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACAGAGTCGGCT

text: Column Innoculant

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACAGCAGTGGTC

text: Microcosm

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACAGCTAGCTTG

text: Microcosm

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACAGTGCTTCAT

text: Microcosm

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACAGTTGCGCGA

text: Microcosm

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACATCACTTAGC

text: Microcosm

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACATGATCGTTC

text: Microcosm

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACATGTCACGTG

text: Microcosm

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACATTCAGCGCA

text: Microcosm

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACCACATACATC

text: Microcosm

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACCAGACGATGC

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACCAGCGACTAG

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACCGCAGAGTCA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACCTCGATCAGA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACCTGTCTCTCT

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGACGTCTTAG

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGAGTGCTATC

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGATGCGACCA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGCAACTGCTA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGCGATACTGG

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGCGCAGATAC

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGCTATCTGGA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGCTCATGGAT

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGGATCGTCAG

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGGTGAGTGTC

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGTACTCAGTG

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGTCTGTAGCA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGTGAGAGAAT

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGTGCCGTAGA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACGTTAGCACAC

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACTACAGCCTAT

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACTACGTGTGGT

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACTAGCTCCATA

text: Column

text: biofilter metagenome

text: biofilter metagenome


text: NEWCASTLE UNIVERSITY

text: public

text: ACTATTGTCACG

text: Column

text: biofilter metagenome

text: biofilter metagenome


ATCC 9175

text: INRA GRIGNON

text: public

text: ATCC 9175

text: We report here the genome sequence of Brevibacterium aurantiacum ATCC 9175, isolated from cheese. Sequencing was performed using Illumina MiSeq technology.

text: Brevibacterium aurantiacum

text: Brevibacterium aurantiacum

text: ATCC 9175

characteristic: strain

text: Draft genome sequence of Brevibacterium aurantiacum ATCC 9175


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Shigella sonnei

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 2a

text: Shigella flexneri 2a

text: Shigella flexneri 2a

characteristic: title


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

characteristic: SRA accession

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 1b

characteristic: organism

text: Shigella flexneri 1b

text: Shigella flexneri 1b


text: INRA GRIGNON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: We report here the genome sequence of Brevibacterium aurantiacum 6(3), isolated from cheese. Sequencing was performed using Illumina MiSeq technology.

characteristic: description

text: Brevibacterium aurantiacum

text: Brevibacterium aurantiacum

text: Draft genome sequence of Brevibacterium aurantiacum 6(3)


text: UCSDMI

text: public

characteristic: INSDC status

text: qiita_sid_2229:2229.B.I.chem.HE.juv1.Thomas.CMB.Seaweed.lane5.NoIndex.L005

characteristic: Submitter Id

text: UNSWB.I. chem HE juv116A7

characteristic: anonymized name

characteristic: depth

text: DNA from surface swab of Ecklonia radiata macro algae

text: Healthy

characteristic: disease status

text: TRUE

text: marine biome

characteristic: env biome

text: kelp forest

characteristic: env feature

text: host-associated

characteristic: env package

text: biofilm

text: TRUE

characteristic: extracted DNA avail now

text: Australia:NSW

characteristic: geo loc name

text: kelp

characteristic: host common name

text: Ecklonia radiata

text: UNSWB.I. chem HE juv116A7

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: mg/L

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: algae metagenome

text: Thomas lab

text: TRUE

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

characteristic: public

text: kelp mucus

characteristic: sample type

text: algae metagenome

text: Winter 1

characteristic: season

text: NSW - centre

characteristic: temp

text: Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2229:2229.B.I.chem.HE.juv2.Thomas.CMB.Seaweed.lane5.NoIndex.L005

characteristic: Submitter Id

text: UNSWB.I. chem HE juv216A8

characteristic: anonymized name

characteristic: description

text: Healthy

text: TRUE

text: marine biome

text: kelp forest

text: host-associated

text: biofilm

text: TRUE

text: Australia:NSW

text: kelp

text: Ecklonia radiata

characteristic: host scientific name

text: UNSWB.I. chem HE juv216A8

text: Missing: Not provided

text: Missing: Not provided

text: mg/L

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: algae metagenome

characteristic: organism

text: Thomas lab

text: TRUE

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: kelp mucus

text: algae metagenome

text: Winter 1

text: NSW - centre

characteristic: title

text: Missing: Not provided

text: Missing: Not provided


text: UCSDMI

text: public

text: qiita_sid_2229:2229.B.I.chem.HE.juv3.Thomas.CMB.Seaweed.lane5.NoIndex.L005

text: UNSWB.I. chem HE juv316A9

characteristic: depth

text: Healthy

characteristic: disease status

text: TRUE

text: marine biome

characteristic: env biome

text: kelp forest

characteristic: env feature

text: host-associated

characteristic: env package

text: biofilm

text: TRUE

characteristic: extracted DNA avail now

text: Australia:NSW

characteristic: geo loc name

text: kelp

characteristic: host common name

text: Ecklonia radiata

text: UNSWB.I. chem HE juv316A9

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: mg/L

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: algae metagenome

text: Thomas lab

text: TRUE

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

characteristic: public

text: kelp mucus

characteristic: sample type

text: algae metagenome

text: Winter 1

characteristic: season

text: NSW - centre

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2229:2229.B.I.chem.HE.juv4.Thomas.CMB.Seaweed.lane5.NoIndex.L005

characteristic: Submitter Id

text: UNSWB.I. chem HE juv416A10

characteristic: anonymized name

characteristic: description

text: Healthy

text: TRUE

text: marine biome

text: kelp forest

text: host-associated

text: biofilm

text: TRUE

text: Australia:NSW

text: kelp

text: Ecklonia radiata

characteristic: host scientific name

text: UNSWB.I. chem HE juv416A10

text: Missing: Not provided

text: Missing: Not provided

text: mg/L

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: algae metagenome

characteristic: organism

text: Thomas lab

text: TRUE

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: kelp mucus

text: algae metagenome

text: Winter 1

text: NSW - centre

characteristic: temp

text: Missing: Not provided

text: Missing: Not provided


text: UCSDMI

text: public

text: qiita_sid_2229:2229.B.I.chem.HE.juv5.Thomas.CMB.Seaweed.lane5.NoIndex.L005

text: UNSWB.I. chem HE juv516A11

characteristic: depth

text: Healthy

characteristic: disease status

text: TRUE

text: marine biome

characteristic: env biome

text: kelp forest

characteristic: env feature

text: host-associated

characteristic: env package

text: biofilm

text: TRUE

characteristic: extracted DNA avail now

text: Australia:NSW

characteristic: geo loc name

text: kelp

characteristic: host common name

text: Ecklonia radiata

text: UNSWB.I. chem HE juv516A11

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: mg/L

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: algae metagenome

text: Thomas lab

text: TRUE

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

characteristic: public

text: kelp mucus

characteristic: sample type

text: algae metagenome

text: Winter 1

text: NSW - centre

characteristic: title

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_2229:2229.B.I.chem.HEpL1.Thomas.CMB.Seaweed.lane6.NoIndex.L006

characteristic: Submitter Id

text: UNSWB.I. chem HEpL114H9

characteristic: anonymized name

characteristic: description

text: Healthy

text: TRUE

text: marine biome

text: kelp forest

text: host-associated

text: biofilm

text: TRUE

text: Australia:NSW

text: kelp

text: Ecklonia radiata

characteristic: host scientific name

text: UNSWB.I. chem HEpL114H9

text: Missing: Not provided

text: Missing: Not provided

text: mg/L

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: algae metagenome

characteristic: organism

text: Thomas lab

text: TRUE

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

text: kelp mucus

text: algae metagenome

text: Winter 1

characteristic: season

text: NSW - centre

text: Missing: Not provided

text: Missing: Not provided


text: UCSDMI

text: public

text: qiita_sid_2229:2229.B.I.chem.HEpL2.Thomas.CMB.Seaweed.lane6.NoIndex.L006

text: UNSWB.I. chem HEpL214H10

characteristic: depth

text: Healthy

characteristic: disease status

text: TRUE

text: marine biome

characteristic: env biome

text: kelp forest

characteristic: env feature

text: host-associated

characteristic: env package

text: biofilm

text: TRUE

characteristic: extracted DNA avail now

text: Australia:NSW

characteristic: geo loc name

text: kelp

characteristic: host common name

text: Ecklonia radiata

text: UNSWB.I. chem HEpL214H10

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: mg/L

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: algae metagenome

text: Thomas lab

text: TRUE

text: Missing: Not provided

text: Missing: Not provided

text: TRUE

characteristic: public

text: kelp mucus

characteristic: sample type

text: algae metagenome

text: Winter 1

text: NSW - centre

characteristic: temp

text: Missing: Not provided

text: Missing: Not provided