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text: human-associated habitat

text: human-gut

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text: colonoscopy

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text: UBERON:feces

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text: 9/21/12 (Day 7)

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text: TRUE

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text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 10/11/12 (Day 28)

text: TRUE

text: first degree relative

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: TRUE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

text: No

text: FALSE

characteristic: latitude

characteristic: longitude

text: Widowed

text: human gut metagenome

text: no IBD

text: Mayo Clinic

text: TRUE

text: no testing done here

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: Missing: Not reported

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: NA-Donor

text: DONOR - 9/14/12

characteristic: description

text: TRUE

text: first degree relative

text: Donor

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: TRUE

text: human

text: Homo sapiens

text: Donor

text: Missing: Restricted access

text: human gut metagenome

characteristic: organism

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

text: C

text: stool

text: human gut metagenome

text: Donor

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 9/25/12 (Day 1)

text: TRUE

text: spouse

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: No

text: TRUE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Single

text: human gut metagenome

text: no IBD

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: negative but diarrhea

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: Pre

text: Pre

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 10/25/12 (Day 28)

characteristic: description

text: TRUE

text: spouse

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: no IBS

text: No

text: TRUE

text: Single

text: human gut metagenome

characteristic: organism

text: no IBD

text: Mayo Clinic

text: TRUE

text: negative but diarrhea

text: return to baseline

text: TRUE

text: C

text: stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: NA-Donor

text: DONOR - 9/24/12

text: TRUE

text: spouse

text: Donor

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: Donor

text: TRUE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Missing: Restricted access

text: human gut metagenome

text: no IBD

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: negative but diarrhea

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: Donor

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 10/26/12 (Day 1)

characteristic: description

text: TRUE

text: spouse

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: no IBS

text: No

text: FALSE

text: Widowed

text: human gut metagenome

characteristic: organism

text: no IBD

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

text: C

text: stool

text: human gut metagenome

text: Pre

text: Pre

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 11/1/12 (Day 7)

text: TRUE

text: spouse

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

characteristic: ibd

text: No

text: FALSE

characteristic: immunocompromized

characteristic: latitude

characteristic: longitude

text: Widowed

text: human gut metagenome

text: no IBD

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 11/26/12 (Day 28)

characteristic: description

text: TRUE

text: spouse

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: no IBS

text: No

text: FALSE

text: Widowed

text: human gut metagenome

characteristic: organism

text: no IBD

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

text: C

text: stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

text: UBERON:feces

text: Missing: Not reported

text: UBERON:feces

text: UBERON:feces

text: NA-Donor

text: DONOR - 10/26/12

text: TRUE

text: spouse

text: Donor

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Donor

characteristic: latitude

characteristic: longitude

text: Missing: Restricted access

text: human gut metagenome

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: Donor

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 10/30/12 (Day 1)

characteristic: description

text: TRUE

text: spouse

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: IBS D

characteristic: ibd

text: No

text: FALSE

characteristic: immunocompromized

text: Divorced

text: human gut metagenome

characteristic: organism

text: no IBD

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

text: C

text: stool

text: human gut metagenome

text: Pre

text: Pre

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 11/7/12 (Day 7)

text: TRUE

text: spouse

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: IBS D

text: No

text: FALSE

characteristic: latitude

characteristic: longitude

text: Divorced

text: human gut metagenome

text: no IBD

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 11/28/12 (Day 28)

characteristic: description

text: TRUE

text: spouse

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: IBS D

characteristic: ibd

text: No

text: FALSE

characteristic: immunocompromized

text: Divorced

text: human gut metagenome

characteristic: organism

text: no IBD

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

text: C

text: stool

text: human gut metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: years

text: UBERON:feces

text: Missing: Not reported

text: UBERON:feces

text: UBERON:feces

text: NA-Donor

text: DONOR - 10/30/12

text: TRUE

text: spouse

text: Donor

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Donor

characteristic: latitude

characteristic: longitude

text: Missing: Restricted access

text: human gut metagenome

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: Donor

text: female

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 11/28/12 (Day 1)

characteristic: description

text: TRUE

text: Mayo Standard

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: no IBS

characteristic: ibd

text: No

text: FALSE

characteristic: immunocompromized

text: Single

text: human gut metagenome

characteristic: organism

text: no IBD

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

text: C

text: stool

text: human gut metagenome

text: Pre

text: Pre

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: years

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 12/7/12 (Day 7)

text: TRUE

text: Mayo Standard

text: Patient

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: no IBS

text: No

text: FALSE

characteristic: latitude

characteristic: longitude

text: Single

text: human gut metagenome

text: no IBD

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 12/26/12 (Day 28)

characteristic: description

text: TRUE

text: Mayo Standard

text: Patient

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: colonoscopy

text: USA:MN

text: FALSE

text: human

text: Homo sapiens

text: no IBS

characteristic: ibd

text: No

text: FALSE

characteristic: immunocompromized

text: Single

text: human gut metagenome

characteristic: organism

text: no IBD

characteristic: pathology

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: return to baseline

text: TRUE

text: C

text: stool

text: human gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: years

text: UBERON:feces

text: Missing: Not reported

text: UBERON:feces

text: UBERON:feces

text: NA-Donor

text: DONOR - 11/28/12

text: TRUE

text: Mayo Standard

text: Donor

text: urban biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: colonoscopy

text: USA:MN

characteristic: geo loc name

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Donor

characteristic: latitude

characteristic: longitude

text: Missing: Restricted access

text: human gut metagenome

text: Mayo Clinic

text: TRUE

text: Missing: Not reported

text: Missing: Not reported

text: TRUE

characteristic: public

text: C

text: stool

characteristic: sample type

text: human gut metagenome

text: Donor

text: male

characteristic: sex

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: genome sequence resistant E.coli

characteristic: title


S MINM 1A

text: University of York

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: S MINM 1A

tag: Namespace:University of York

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Natural salt marsh, Mersea Island, Summer


S MINM 2A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: S MINM 2A

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


S MINM 3A

text: University of York

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: S MINM 3A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


S MIRM 1A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

text: S MIRM 1A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Realigned salt marsh, Mersea Island, Summer


S MIRM 1Ar

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: S MIRM 1Ar

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


S MIRM 2A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

characteristic: SRA accession

text: S MIRM 2A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


W MINM 1A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

text: W MINM 1A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Natural salt marsh, Mersea Island, Winter


W MINM 2A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: W MINM 2A

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


W MINM 3A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

characteristic: SRA accession

text: W MINM 3A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


W MIRM 1A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

text: W MIRM 1A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Realigned salt marsh, Mersea Island, Winter


W MIRM 2A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: W MIRM 2A

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


W MIRM 3A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

characteristic: SRA accession

text: W MIRM 3A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


S AHNM 1A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

text: S AHNM 1A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Natural salt marsh, Abbotts Hall, Summer


S AHNM 2B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: S AHNM 2B

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


S AHNM 3A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

characteristic: SRA accession

text: S AHNM 3A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


S AHRM 1A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

text: S AHRM 1A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Realigned salt marsh, Abbotts Hall, Summer


S AHRM 2B

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: S AHRM 2B

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


S AHRM 3B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

characteristic: SRA accession

text: S AHRM 3B

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


W AHNM 2A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

text: W AHNM 2A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Natural salt marsh, Abbotts Hall, Winter


W AHNM 2B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: W AHNM 2B

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


W AHNM 3A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

characteristic: SRA accession

text: W AHNM 3A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


W AHRM 1A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

text: W AHRM 1A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Realigned salt marsh, Abbotts Hall, Winter


W AHRM 2A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: W AHRM 2A

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


W AHRM 3A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

characteristic: SRA accession

text: W AHRM 3A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


S FRNM 1A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

text: S FRNM 1A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Natural salt marsh, Fingringhoe Range, Summer


S FRNM 2A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: S FRNM 2A

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


S FRNM 3A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

characteristic: SRA accession

text: S FRNM 3A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


S FRRM 1A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

text: S FRRM 1A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Realigned salt marsh, Fingringhoe Range, Summer


S FRRM 3A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: S FRRM 3A

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


W FRNM 1A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

characteristic: SRA accession

text: W FRNM 1A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

text: Natural salt marsh, Fingringhoe Range, Winter


W FRNM 2A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

text: W FRNM 2A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method


W FRNM 3A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: W FRNM 3A

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


W FRRM 1A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

characteristic: SRA accession

text: W FRRM 1A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

text: Realigned salt marsh, Fingringhoe Range, Winter


W FRRM 2A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

text: W FRRM 2A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method


Sp MINM 1A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sp MINM 1A

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

text: Natural salt marsh, Mersea Island, Spring

characteristic: title


Sp MINM 2A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

characteristic: SRA accession

text: Sp MINM 2A

characteristic: collection date

text: marine salt marsh biome

characteristic: environment (biome)

text: sea shore

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: sediment metagenome

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq


Sp MIRM 1A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of York

text: public

text: Sp MIRM 1A

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Southern Saltmarshes

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina HiSeq

characteristic: sequencing method

text: Realigned salt marsh, Mersea Island, Spring


Sp MIRM 2A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sp MIRM 2A

characteristic: Submitter Id

text: marine salt marsh biome

text: sea shore

text: sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

characteristic: organism

text: Southern Saltmarshes

text: sediment metagenome

text: sediment

text: Illumina HiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

text: public

characteristic: SRA accession

text: Bacteria

characteristic: bio material

characteristic: description

text: Yes

characteristic: environmental sample

text: metagenome

text: metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: Yes

text: metagenome

text: metagenome


text: UNIVERSIDAD AUSTRAL DE CHILE

text: public

tag: Namespace:UNIVERSIDAD AUSTRAL DE CHILE

characteristic: collection date

text: mountain forest soil

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Fondecyt 1141060

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

text: soil

characteristic: soil environmental package

text: Fondecyt 1141060


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Jurelevicius

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: oil contamination

characteristic: chemical administration

text: Water collected from Atlantic ocean

text: marine water

text: microcosms set up with marine water

text: marine water

text: Atlantic Ocean

text: metagenome

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

characteristic: pcr primers

text: low temperature and high pressure

characteristic: perturbation

text: Response of marine bacteria to oil contamination and to high pressure and low temperature deep sea conditions

unit: g

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina

characteristic: sequencing method

text: V4 region of the 16S rRNA coding gene.

characteristic: target subfragment

characteristic: title


W22 40

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Jurelevicius

text: public

characteristic: SRA accession

text: W22 40

text: oil contamination

characteristic: collection date

text: marine water incubated for 40 days at 0.1 Mpa and 22˚C

characteristic: description

text: marine water

characteristic: environment (biome)

text: microcosms set up with marine water

characteristic: environment (feature)

text: marine water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured bacterium

text: low temperature and high pressure

characteristic: project name

unit: mL

text: uncultured bacterium

text: Illumina

text: V4 region of the 16S rRNA coding gene.


WO22 40

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Jurelevicius

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: WO22 40

characteristic: Submitter Id

text: oil contamination

characteristic: chemical administration

text: oil-contaminated marine water incubated for 40 days at 0.1 Mpa and 22˚C

text: marine water

text: microcosms set up with marine water

text: marine water

text: Atlantic Ocean

text: metagenome

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

characteristic: pcr primers

text: low temperature and high pressure

characteristic: perturbation

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina

text: V4 region of the 16S rRNA coding gene.


W4 40

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Jurelevicius

text: public

characteristic: SRA accession

text: W4 40

text: oil contamination

characteristic: collection date

text: marine water incubated for 40 days at 0.1 Mpa and 4˚C

characteristic: description

text: marine water

characteristic: environment (biome)

text: microcosms set up with marine water

characteristic: environment (feature)

text: marine water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: uncultured bacterium

text: low temperature and high pressure

text: uncultured bacterium

text: Illumina

characteristic: sequencing method

text: V4 region of the 16S rRNA coding gene.

characteristic: target subfragment

characteristic: title


WO4 40

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Jurelevicius

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: WO4 40

characteristic: Submitter Id

text: oil contamination

characteristic: chemical administration

text: oil-contaminated marine water incubated for 40 days at 0.1 Mpa and 4˚C

text: marine water

text: microcosms set up with marine water

text: marine water

text: Atlantic Ocean

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: low temperature and high pressure

characteristic: project name

text: uncultured bacterium

text: Illumina

text: V4 region of the 16S rRNA coding gene.


WP4 40

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Jurelevicius

text: public

characteristic: SRA accession

text: WP4 40

text: oil contamination

characteristic: collection date

text: marine water incubated for 40 days at 22 Mpa and 4˚C;

characteristic: description

text: marine water

characteristic: environment (biome)

text: microcosms set up with marine water

characteristic: environment (feature)

text: marine water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: uncultured bacterium

characteristic: pcr primers

text: low temperature and high pressure

characteristic: perturbation

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina

text: V4 region of the 16S rRNA coding gene.


WPO4 40

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Jurelevicius

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: WPO4 40

characteristic: Submitter Id

text: oil contamination

characteristic: chemical administration

text: oil-contaminated marine water incubated for 40 days at 22 Mpa and 4˚C

text: marine water

text: microcosms set up with marine water

text: marine water

text: Atlantic Ocean

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured bacterium

text: low temperature and high pressure

text: uncultured bacterium

text: Illumina

characteristic: sequencing method

text: V4 region of the 16S rRNA coding gene.

characteristic: target subfragment

characteristic: title


WP4 40D

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Jurelevicius

text: public

characteristic: SRA accession

text: WP4 40D

text: oil contamination

characteristic: collection date

text: marine water incubated for 40 days at 22 Mpa and 4˚C; depressurized after 20 days of incubation and repressurized for another 20 days.

characteristic: description

text: marine water

characteristic: environment (biome)

text: microcosms set up with marine water

characteristic: environment (feature)

text: marine water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: low temperature and high pressure

characteristic: project name

text: uncultured bacterium

text: Illumina

text: V4 region of the 16S rRNA coding gene.


WPO4 40D

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Jurelevicius

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: WPO4 40D

characteristic: Submitter Id

text: oil contamination

characteristic: chemical administration

text: oil-contaminated marine water incubated for 40 days at 22 Mpa and 4˚C; depressurized after 20 days of incubation and repressurized for another 20 days.

text: marine water

text: microcosms set up with marine water

text: marine water

text: Atlantic Ocean

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured bacterium

characteristic: pcr primers

text: low temperature and high pressure

characteristic: perturbation

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina

text: V4 region of the 16S rRNA coding gene.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VT

text: public

characteristic: SRA accession

text: source water

characteristic: description

text: metagenome

text: metagenome

text: I and II

characteristic: series

text: DWTP-15Fall-Source water

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VT

characteristic: INSDC center name

text: public

text: Biological oxidation contactor

text: metagenome

characteristic: organism

text: metagenome

text: I


text: VT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Sedimentation tank

text: metagenome

text: metagenome

text: I


text: VT

text: public

text: Sedimentation tank effluent

text: metagenome

text: metagenome

text: I

text: DWTP-15Fall-S1-HEST OF


text: VT

text: public

text: ozonation effluent

text: metagenome

text: metagenome

text: I


text: VT

text: public

text: GAC

text: metagenome

text: metagenome

text: I


text: VT

text: public

text: GAC effluent

text: metagenome

text: metagenome

text: I

text: DWTP-15Fall-S1-GAC OF


text: VT

text: public

text: Sand filter back wash water

text: metagenome

text: metagenome

text: I

text: DWTP-15Fall-S1-SF BW


text: VT

text: public

text: Sand filter effluent

text: metagenome

text: metagenome

text: I

text: DWTP-15Fall-S1-SF OF


text: VT

text: public

text: Disinfected water

text: metagenome

text: metagenome

text: I

text: DWTP-15Fall-S1-Disinfected water


text: VT

text: public

text: Sedimentation tank effluent

text: metagenome

text: metagenome

text: II

text: DWTP-15Fall-S2-HFST OF


text: VT

text: public

text: Quarts sand filter (media)

text: metagenome

text: metagenome

text: II


text: VT

text: public

text: Ceramic filter (media)

text: metagenome

text: metagenome

text: II


text: VT

text: public

text: Biological filter effluent

text: metagenome

text: metagenome

text: II

text: DWTP-15Fall-S2-BF OF


text: VT

text: public

text: ozonation effluent

text: metagenome

text: metagenome

text: II


text: VT

text: public

text: GAC

text: metagenome

text: metagenome

text: II


text: VT

text: public

text: GAC effluent

text: metagenome

text: metagenome

text: II

text: DWTP-15Fall-S2-GAC OF


text: VT

text: public

text: Sand filter back wash water

text: metagenome

text: metagenome

text: II

text: DWTP-15Fall-S2-SF BW


text: VT

text: public

text: Sand filter effluent before back wash

text: metagenome

text: metagenome

text: II

text: DWTP-15Fall-S2-SF OF(b)


text: VT

text: public

text: Disinfected water

text: metagenome

text: metagenome

text: II

text: DWTP-15Fall-S2-Disinfected water


text: VT

text: public

text: Sand filter effluent after back wash

text: metagenome

text: metagenome

text: II

text: DWTP-15Fall-S2-SF OF(a)


text: VT

text: public

text: Biological oxidation tank carrier biofilm

text: metagenome

text: metagenome

text: I

text: DWTP-15Fall-S1-BOC biofilm


text: Saolta

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Saolta

text: public

text: IRL

characteristic: SRA accession

text: Klebsiella

characteristic: genus

text: Ireland

text: Homo sapiens

characteristic: host

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

type: AMR curated data - CABBAGE

value: tigecycline

value: EUCAST

value: broth dilution

value: Vitek

value: resistant

value: Klebsiella pneumoniae

value: amoxicillin-clavulanic acid

value: tobramycin

value: susceptible

value: gentamicin

value: cefpodoxime-clavulanic acid

value: cefoxitin

value: meropenem

value: ampicillin

value: piperacillin-tazobactam

value: ertapenem

value: amikacin

value: cefotaxime


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title

value: cefpodoxime

value: EUCAST

value: intermediate

value: tigecycline


text: Saolta

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: skin or soft tissue

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

value: broth dilution

value: Vitek

value: Klebsiella pneumoniae

value: resistant


text: Saolta

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IRL

characteristic: Submitter Id

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: amoxicillin-clavulanic acid

value: gentamicin

value: susceptible

value: tobramycin


text: Saolta

text: public

text: IRL

characteristic: collection date

text: Klebsiella

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

characteristic: host scientific name

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: cefoxitin

value: cefpodoxime-clavulanic acid

value: meropenem


characteristic: ENA-CHECKLIST

text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

characteristic: isolate

text: Human

characteristic: isolation source

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: ertapenem

value: ampicillin

value: amikacin

value: piperacillin-tazobactam


characteristic: ENA-FIRST-PUBLIC

text: Saolta

text: public

text: IRL

characteristic: SRA accession

text: Klebsiella

characteristic: genus

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: EUCAST

value: cefpodoxime

value: cefotaxime


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

characteristic: host

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: broth dilution

value: Vitek

value: tigecycline


text: Saolta

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title

value: resistant

value: Klebsiella pneumoniae

value: amoxicillin-clavulanic acid


text: Saolta

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: urinary tract

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

value: susceptible

value: tobramycin

value: gentamicin


text: Saolta

text: public

text: IRL

characteristic: Submitter Id

characteristic: collection date

text: Klebsiella

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: cefoxitin

value: cefpodoxime-clavulanic acid

value: meropenem

value: intermediate


characteristic: ENA-CHECKLIST

text: Marine Biological Laboratory

text: public

tag: Namespace:Marine Biological Laboratory

text: Tubeworm

characteristic: common name

text: Escarpia

characteristic: description

text: marine benthic

characteristic: environment (biome)

text: marine benthic feature

characteristic: environment (feature)

text: anatomical entity environment

characteristic: environment (material)

text: Cayman Islands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: invertebrate metagenome

text: Tubeworm

characteristic: project name

text: invertebrate metagenome

text: Illumina

characteristic: sequencing method

text: Tubeworm endosymbiont Mid-Cayman Rise


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Tubeworm

text: Lamellibrachia

text: marine benthic

text: marine benthic feature

text: anatomical entity environment

text: Cayman Islands

text: host-associated

text: metagenome

text: invertebrate metagenome

text: Tubeworm

text: invertebrate metagenome

text: Illumina

text: Tubeworm endosymbiont Mid-Cayman Rise

characteristic: title


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

tag: Namespace:University Hospital Galway

characteristic: Submitter Id

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Shigella dysenteriae

characteristic: organism

text: Shigella dysenteriae


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Shigella sonnei

text: Shigella sonnei


characteristic: ENA-LAST-UPDATE

text: LUMC

text: public

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Mouse kidneys were snap frozen in N2, stored in -80 mRNA was isolated from total RNA using the oligo-dT magnetic beads. After fragmentation of the mRNA, a cDNA synthesis was performed. This was used for ligation with the sequencing adapters and PCR amplification of the resulting product. The quality and yield after sample preparation was measured with a DNA 1000 Lab-on-a-Chip. The expected broad peak between 300-500 bp was observed. The Illumina® mRNA-Seq Sample Prep Kit was used to process the sample(s). The sample preparation was performed according the Illumina protocol \Preparing Samples for Sequencing of mRNA\ (1004898 Rev. D). Briefly, mRNA was isolated from total RNA using the oligo-dT magnetic beads. After fragmentation of the mRNA, a cDNA synthesis was performed. This was used for ligation with the sequencing adapters and PCR amplicification of the resulting product. The quality and yield after sample preparation was measured with a DNA 1000 Lab-on-a-Chip (see appendices). The size of the resulting products was consistent with the expected size distribution (a broad peak between 300-500 bp on a DNA 1000 chip).

characteristic: description

text: normal

characteristic: disease

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: kidney

characteristic: organism part

text: wild type

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: LUMC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: Protocols: Renal injury was induced one week after tamoxifen administration by a single i.p. injection of S-(1,2-dichlorovinyl)-L-cysteine (DCVC) (15mg/kg). Mouse kidneys were snap frozen in N2, stored in -80 mRNA was isolated from total RNA using the oligo-dT magnetic beads. After fragmentation of the mRNA, a cDNA synthesis was performed. This was used for ligation with the sequencing adapters and PCR amplification of the resulting product. The quality and yield after sample preparation was measured with a DNA 1000 Lab-on-a-Chip. The expected broad peak between 300-500 bp was observed. The Illumina® mRNA-Seq Sample Prep Kit was used to process the sample(s). The sample preparation was performed according the Illumina protocol \Preparing Samples for Sequencing of mRNA\ (1004898 Rev. D). Briefly, mRNA was isolated from total RNA using the oligo-dT magnetic beads. After fragmentation of the mRNA, a cDNA synthesis was performed. This was used for ligation with the sequencing adapters and PCR amplicification of the resulting product. The quality and yield after sample preparation was measured with a DNA 1000 Lab-on-a-Chip (see appendices). The size of the resulting products was consistent with the expected size distribution (a broad peak between 300-500 bp on a DNA 1000 chip).

text: renal injury

text: Mus musculus

text: Mus musculus

text: kidney

text: renal injury

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LUMC

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: tam-KspCad-CreERT2;Pkd1lox2-11;lox2-11 Mouse kidneys were snap frozen in N2, stored in -80 mRNA was isolated from total RNA using the oligo-dT magnetic beads. After fragmentation of the mRNA, a cDNA synthesis was performed. This was used for ligation with the sequencing adapters and PCR amplification of the resulting product. The quality and yield after sample preparation was measured with a DNA 1000 Lab-on-a-Chip. The expected broad peak between 300-500 bp was observed. The Illumina® mRNA-Seq Sample Prep Kit was used to process the sample(s). The sample preparation was performed according the Illumina protocol \Preparing Samples for Sequencing of mRNA\ (1004898 Rev. D). Briefly, mRNA was isolated from total RNA using the oligo-dT magnetic beads. After fragmentation of the mRNA, a cDNA synthesis was performed. This was used for ligation with the sequencing adapters and PCR amplicification of the resulting product. The quality and yield after sample preparation was measured with a DNA 1000 Lab-on-a-Chip (see appendices). The size of the resulting products was consistent with the expected size distribution (a broad peak between 300-500 bp on a DNA 1000 chip).

text: autosomal dominant polycystic kidney disease

text: Mus musculus

characteristic: organism

text: Mus musculus

text: kidney

text: cystic kidneys

text: Mus musculus

text: male


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Shigella flexneri 2a

text: Shigella flexneri 2a


text: Human

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Human

text: Homo sapiens

text: ESS-1 cell line

characteristic: sample description

text: Homo sapiens

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU Food

characteristic: collected by

text: Acinetobacter johnsonii C6

characteristic: description

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

characteristic: is the sequenced pathogen host associated?

text: Aquifer

characteristic: isolation source non-host-associated

text: Acinetobacter johnsonii

text: Acinetobacter johnsonii

text: Acinetobacter johnsonii C6

characteristic: title


E-MTAB-5446:Sample 1

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5446:Sample 1

tag: Namespace:Barton Group, Division of Computational Biology

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Protocols: Seedlings were harvested after 14 days. WT A. thaliana Col-0 seeds were sown aseptically on MS10 plates, stratified for 2 days at 4 degrees C and then grown at a constant 21 degrees C under a 16-h light/8-h dark cycle for a further 14 days. Total RNA extraction with RNeasy Plant Mini Kit (Qiagen) then treated with TURBOTM DNase (Ambion). 4 μl of ERCC spike-ins at a 1:100 dilution were added to 1 μg/6 μl of total RNA. Illumina TruSeq Stranded Total RNA with Ribo-Zero Plant.

text: seedling

characteristic: developmental stage

characteristic: ecotype

characteristic: ercc spike-in mix

characteristic: experiment

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 1