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characteristic: anonymized name

characteristic: chloride

characteristic: depth

text: IC3.S2.L3 Ice core sample

characteristic: description

text: TRUE

characteristic: elevation

text: polar biome

characteristic: env biome

text: cold temperature habitat

characteristic: env feature

text: water

text: sea water

text: TRUE

text: Arctic ocean

text: seawater metagenome

text: ANL

text: FALSE

text: TRUE

text: completed

text: sea water

text: sequenced (16S)

text: seawater metagenome

text: Catlin Arctic Survey 2010 L3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_723:723.IC3.S3.G3.Catlin2.16Spool.110602.HWI.EAS137R.0375.s.5.1.sequence

text: IC3.S3.G3 Ice core sample

text: TRUE

text: polar biome

text: cold temperature habitat

text: water

characteristic: env package

text: sea water

text: TRUE

characteristic: extracted DNA avail now

text: Arctic ocean

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

characteristic: nitrate

characteristic: nitrite

text: seawater metagenome

characteristic: organism

characteristic: phosphate

text: ANL

text: FALSE

text: TRUE

characteristic: public

text: completed

characteristic: salinity

text: sea water

characteristic: sample type

text: sequenced (16S)

text: seawater metagenome

characteristic: temp

text: Catlin Arctic Survey 2010 L3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_723:723.IC3.S3.L3.Catlin2.16Spool.110602.HWI.EAS137R.0375.s.5.1.sequence

characteristic: Submitter Id

characteristic: alkalinity

characteristic: ammonium

characteristic: anonymized name

characteristic: chloride

characteristic: depth

text: IC3.S3.L3 Ice core sample

characteristic: description

text: TRUE

characteristic: elevation

text: polar biome

characteristic: env biome

text: cold temperature habitat

characteristic: env feature

text: water

text: sea water

text: TRUE

text: Arctic ocean

text: seawater metagenome

text: ANL

text: FALSE

text: TRUE

text: completed

text: sea water

text: sequenced (16S)

text: seawater metagenome

text: Catlin Arctic Survey 2010 L3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_723:723.IC4.S1.G3.Catlin2.16Spool.110602.HWI.EAS137R.0375.s.5.1.sequence

text: IC4.S1.G3 Ice core sample

text: TRUE

text: polar biome

text: cold temperature habitat

text: water

characteristic: env package

text: sea water

text: TRUE

characteristic: extracted DNA avail now

text: Arctic ocean

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

characteristic: nitrate

characteristic: nitrite

text: seawater metagenome

characteristic: organism

characteristic: phosphate

text: ANL

text: FALSE

text: TRUE

characteristic: public

text: completed

characteristic: salinity

text: sea water

characteristic: sample type

text: sequenced (16S)

text: seawater metagenome

characteristic: silicate

characteristic: temp

text: Catlin Arctic Survey 2010 L3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_723:723.IC4.S1.L3.Catlin2.16Spool.110602.HWI.EAS137R.0375.s.5.1.sequence

characteristic: Submitter Id

characteristic: alkalinity

characteristic: ammonium

characteristic: anonymized name

characteristic: chloride

characteristic: depth

text: IC4.S1.L3 Ice core sample

characteristic: description

text: TRUE

characteristic: elevation

text: polar biome

characteristic: env biome

text: cold temperature habitat

characteristic: env feature

text: water

text: sea water

text: TRUE

text: Arctic ocean

text: seawater metagenome

text: ANL

text: FALSE

text: TRUE

text: completed

text: sea water

text: sequenced (16S)

text: seawater metagenome

text: Catlin Arctic Survey 2010 L3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_723:723.IC4.S2.G3.Catlin2.16Spool.110602.HWI.EAS137R.0375.s.5.1.sequence

text: IC4.S2.G3 Ice core sample

text: TRUE

text: polar biome

text: cold temperature habitat

text: water

characteristic: env package

text: sea water

text: TRUE

characteristic: extracted DNA avail now

text: Arctic ocean

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

characteristic: nitrate

characteristic: nitrite

text: seawater metagenome

characteristic: organism

characteristic: phosphate

text: ANL

text: FALSE

text: TRUE

characteristic: public

text: completed

characteristic: salinity

text: sea water

characteristic: sample type

text: sequenced (16S)

text: seawater metagenome

characteristic: silicate

characteristic: temp

characteristic: title

text: Catlin Arctic Survey 2010 L3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_723:723.IC4.S2.L3.Catlin2.16Spool.110602.HWI.EAS137R.0375.s.5.1.sequence

characteristic: Submitter Id

characteristic: alkalinity

characteristic: ammonium

characteristic: anonymized name

characteristic: chloride

characteristic: depth

text: IC4.S2.L3 Ice core sample

characteristic: description

text: TRUE

characteristic: elevation

text: polar biome

characteristic: env biome

text: cold temperature habitat

characteristic: env feature

text: water

text: sea water

text: TRUE

text: Arctic ocean

text: seawater metagenome

text: ANL

text: FALSE

text: TRUE

text: completed

text: sea water

text: sequenced (16S)

text: seawater metagenome

text: Catlin Arctic Survey 2010 L3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_723:723.IC4.S3.G3.Catlin2.16Spool.110602.HWI.EAS137R.0375.s.5.1.sequence

text: IC4.S3.G3 Ice core sample

text: TRUE

text: polar biome

text: cold temperature habitat

text: water

characteristic: env package

text: sea water

text: TRUE

characteristic: extracted DNA avail now

text: Arctic ocean

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

characteristic: longitude

characteristic: nitrate

characteristic: nitrite

text: seawater metagenome

characteristic: organism

characteristic: phosphate

text: ANL

text: FALSE

text: TRUE

characteristic: public

text: completed

characteristic: salinity

text: sea water

characteristic: sample type

text: sequenced (16S)

text: seawater metagenome

characteristic: silicate

characteristic: temp

text: Catlin Arctic Survey 2010 L3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_723:723.IC4.S3.L3.Catlin2.16Spool.110602.HWI.EAS137R.0375.s.5.1.sequence

characteristic: Submitter Id

characteristic: alkalinity

characteristic: ammonium

characteristic: anonymized name

characteristic: chloride

characteristic: depth

text: IC4.S3.L3 Ice core sample

characteristic: description

text: TRUE

characteristic: elevation

text: polar biome

characteristic: env biome

text: cold temperature habitat

characteristic: env feature

text: water

text: sea water

text: TRUE

text: Arctic ocean

text: seawater metagenome

text: ANL

text: FALSE

text: TRUE

text: completed

text: sea water

text: sequenced (16S)

text: seawater metagenome

text: Catlin Arctic Survey 2010 L3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: soy

characteristic: crop

text: Agricultural soil - soy, Ontario

text: TRUE

text: cropland biome

text: agricultural feature

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Canada:Ontario

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: Ontario

characteristic: location

characteristic: longitude

text: soil metagenome

characteristic: organism

characteristic: ph

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

characteristic: public

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

text: agricultural soil

characteristic: soil type

text: Silt loam

characteristic: texture

text: Pipette method

characteristic: title

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: agricultural soil

text: ISBN 873718623


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_632:632.Agricultural.soil.wheat

characteristic: Submitter Id

characteristic: anonymized name

text: wheat

characteristic: depth

text: Agricultural soil - wheat, Ontario

characteristic: description

text: TRUE

characteristic: elevation

text: cropland biome

characteristic: env biome

text: agricultural feature

characteristic: env feature

text: soil

text: soil

text: TRUE

text: Canada:Ontario

text: Ontario

text: soil metagenome

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: agricultural soil

text: Silt loam

text: Pipette method

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: agricultural soil

text: ISBN 873718623


characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Arctic Tundra 1, Darring Lake

text: TRUE

text: tundra biome

text: tundra

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Canada:Darring Lake

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: Darring Lake

characteristic: location

characteristic: longitude

text: soil metagenome

characteristic: organism

characteristic: ph

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

characteristic: public

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

text: tundra soil

characteristic: soil type

text: Missing: Not provided

characteristic: texture

text: Pipette method

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: tundra soil

text: ISBN 873718623


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: depth

text: Arctic Tundra 2

characteristic: description

text: TRUE

characteristic: elevation

text: tundra biome

text: clay soil

text: soil

text: soil

text: TRUE

text: Canada:Arctic tundra

text: Arctic tundra

text: soil metagenome

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: tundra soil

text: Silty clay loam

text: Pipette method

characteristic: title

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: tundra soil

text: ISBN 873718623


characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_632:632.Boreal.coniferous.forest

text: Boreal coniferous forest, Alberta

text: TRUE

text: temperate broadleaf and mixed forest biome

characteristic: env biome

text: forest soil

characteristic: env feature

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Canada:Alberta

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: Alberta

characteristic: location

characteristic: longitude

text: soil metagenome

characteristic: organism

characteristic: ph

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

characteristic: public

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

text: boreal coniferous forest soil

text: Fine sandy loam

text: Pipette method

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: boreal coniferous forest soil

text: ISBN 873718623


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: depth

text: Compost, Cambridge

characteristic: description

text: TRUE

text: temperate grasslands, savannas, and shrubland biome

text: compost soil

text: soil

text: soil

text: TRUE

text: Canada:Cambridge

text: Cambridge

text: soil metagenome

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: compost

characteristic: soil type

text: Fine sandy loam

characteristic: texture

text: Pipette method

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: compost

text: ISBN 873718623


characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Northern peatlands, Old Crow

text: TRUE

characteristic: elevation

text: tundra biome

characteristic: env biome

text: peatland

characteristic: env feature

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Canada:Old Crow

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: Old Crow

characteristic: location

characteristic: longitude

text: soil metagenome

characteristic: organism

characteristic: ph

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: peatland soil

text: Silty clay loam

text: Pipette method

characteristic: title

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: peatland soil

text: ISBN 873718623


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF LIVERPOOL

characteristic: Submitter Id

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: K

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: M

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: anonymized name

characteristic: depth

text: Tar sand 1, Alberta

text: TRUE

characteristic: elevation

characteristic: env biome

text: oil contaminated soil

characteristic: env feature

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Canada:Alberta

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: Alberta

characteristic: location

characteristic: longitude

text: soil metagenome

characteristic: organism

characteristic: ph

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

characteristic: public

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

text: tar sand

characteristic: soil type

text: Loam

characteristic: texture

text: Pipette method

characteristic: title

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: tar sand

text: ISBN 873718623


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: depth

text: Tar sand 2, Alberta

characteristic: description

text: TRUE

characteristic: elevation

text: oil contaminated soil

text: soil

text: soil

text: TRUE

text: Canada:Alberta

text: Alberta

text: soil metagenome

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: tar sand

text: Loamy sand

text: Pipette method

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: tar sand

text: ISBN 873718623


text: UCSDMI

text: public

text: qiita_sid_632:632.Temperate.deciduous.forest

text: Temperate deciduous forest, Ontario

text: TRUE

characteristic: env biome

text: forest soil

characteristic: env feature

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Canada:Ontario

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: Ontario

characteristic: location

characteristic: longitude

text: soil metagenome

characteristic: organism

characteristic: ph

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

characteristic: public

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

text: temperate deciduous forest soil

characteristic: soil type

text: Fine sandy loam

text: Pipette method

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: temperate deciduous forest soil

text: ISBN 873718623


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: depth

text: Temperate rain forest, British Columbia

text: TRUE

text: forest soil

text: soil

text: soil

text: TRUE

text: Canada:British Columbia

text: British Columbia

text: soil metagenome

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: temperate rain forest soil

text: Coarse sandy loam

characteristic: texture

text: Pipette method

characteristic: title

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: temperate rain forest soil

text: ISBN 873718623


text: UCSDMI

text: public

text: UW community garden, Ontario

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: garden

characteristic: env feature

text: soil

characteristic: env package

text: soil

text: TRUE

characteristic: extracted DNA avail now

text: Canada:Ontario

characteristic: geo loc name

characteristic: host subject id

characteristic: latitude

text: Ontario

characteristic: location

characteristic: longitude

text: soil metagenome

characteristic: organism

characteristic: ph

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

characteristic: public

text: completed

text: soil

text: sequenced (16S)

text: soil metagenome

text: garden soil

text: Fine sandy loam

text: Pipette method

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: garden soil

text: ISBN 873718623


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: depth

text: Wetland soil, Mt. St. Hilaire

text: TRUE

text: montane shrubland biome

text: wetland

text: soil

text: soil

text: TRUE

text: Canada:Mt St Hillaire

text: Mt St Hillaire

text: soil metagenome

text: Standard saturated paste method

text: U Waterlooo

text: FALSE

text: TRUE

text: completed

text: soil

characteristic: sample type

text: sequenced (16S)

text: soil metagenome

text: wetland soil

characteristic: soil type

text: Missing: Not provided

text: Pipette method

text: Canadian MetaMicroBiome Initiative

text: Combustion method

text: Combustion method

text: wetland soil

text: ISBN 873718623


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

tag: Namespace:HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: collection date

text: Pristine site

characteristic: description

text: freshwater

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Tanzania

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: freshwater metagenome

characteristic: organism

text: Tropical riverine communities

characteristic: project name

text: freshwater metagenome

text: Illumina MiSeq 2x250 bp paired-end

characteristic: sequencing method

text: Biogeography of tropical riverine bacterioplankton communities determined

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Urban site

text: freshwater

text: river

text: water

text: Tanzania

text: mimarks-survey

text: freshwater metagenome

text: Tropical riverine communities

text: freshwater metagenome

text: Illumina MiSeq 2x250 bp paired-end

text: water


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

characteristic: collection date

text: Agricultural site

characteristic: description

text: freshwater

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: freshwater metagenome

text: Tropical riverine communities

text: freshwater metagenome

text: Illumina MiSeq 2x250 bp paired-end

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GIST

text: public

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

characteristic: title


FinaleNod

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: FinaleNod

tag: Namespace:ALL-RUSSIA RESEARCH INSTITUTE FOR AGRICULTURAL MICROBIOLOGY

text: pea

characteristic: common name

text: Finale

characteristic: genotype

text: Pisum sativum

text: nodules

characteristic: organism part

text: 4 weeks post inoculation

characteristic: sampling time point

text: Pisum sativum

text: Finale nodules MACE


FrissonNod

text: ALL-RUSSIA RESEARCH INSTITUTE FOR AGRICULTURAL MICROBIOLOGY

text: public

characteristic: SRA accession

text: FrissonNod

characteristic: Submitter Id

text: pea

text: Frisson

text: Pisum sativum

text: nodules

text: 4 weeks post inoculation

text: Pisum sativum

text: Frisson Nod


text: public

text: pea

text: Pisum sativum

text: nodulated roots

text: 4 weeks post inoculation

text: Pisum sativum

text: NGB1238 nodulated roots


text: public

text: pea

text: Sparkle

text: Pisum sativum

text: nodulated roots

text: 3 weeks post inoculation

text: Pisum sativum

text: Sparkle Nodulated Roots


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

characteristic: collection date

text: After aeration

characteristic: description

text: freshwater

characteristic: environment (biome)

text: drinking water treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: freshwater metagenome

text: Microbial community in tropical drinking water treatment plant

characteristic: project name

text: freshwater metagenome

text: Illumina MiSeq 2x250bp paired-end

characteristic: sequencing method

text: Microbial community dynamics in drinking water treatment plant

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: After flocculation/coagulation/prechlorination

text: freshwater

text: drinking water treatment plant

text: water

text: Tanzania

text: mimarks-survey

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: Illumina MiSeq 2x250bp paired-end

characteristic: title

text: water


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: After sand filtration

characteristic: description

text: freshwater

characteristic: environment (biome)

text: drinking water treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: freshwater metagenome

text: freshwater metagenome

text: Illumina MiSeq 2x250bp paired-end

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Post-chlorination

text: freshwater

text: drinking water treatment plant

text: water

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: freshwater metagenome

characteristic: project name

text: freshwater metagenome

text: Illumina MiSeq 2x250bp paired-end

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: External Id

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Source water

text: freshwater

text: drinking water treatment plant

text: water

text: Tanzania

text: mimarks-survey

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: Illumina MiSeq 2x250bp paired-end

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

characteristic: collection date

text: After sedimentation

characteristic: description

text: freshwater

characteristic: environment (biome)

text: drinking water treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: freshwater metagenome

text: freshwater metagenome

text: Illumina MiSeq 2x250bp paired-end

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY

text: 16S rRNA amplicon

text: Lactobacillus mellifer

text: Lactobacillus mellifer

text: targeted sequencing on hbs-LAB strains


text: SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 16S rRNA amplicon

text: Bifidobacterium asteroides

text: Bifidobacterium asteroides

text: targeted sequencing on hbs-LAB strains


text: CURTIN UNIVERSITY

text: public

characteristic: SRA accession

tag: Namespace:CURTIN UNIVERSITY

characteristic: Submitter Id

text: Dr Simon Ellwood

characteristic: collected by

text: Pyrenophora teres f. teres is the cause of barley net form of net blotch. A reference genome assembly for Pyrenophora teres f. teres strain W1 was produced based on Pacific Biosciences long read sequencing chemistry at > 100’s coverage. Whole chromosomes were constructed by optical mapping to join assembly breaks caused by extensive repetitive DNA with genetic mapping used as a second means of validation. Gene predictions were guided by RNAseq.

text: No

characteristic: environmental sample

text: Australia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Wongan Hills NVT site

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Hordeum vulgare

characteristic: host scientific name

characteristic: host taxid

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pyrenophora teres f. teres

characteristic: organism

text: Pyrenophora teres f. teres

text: Pyrenophora teres f. teres W1-1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CURTIN UNIVERSITY

characteristic: INSDC center name

text: public

text: Ian Goss

characteristic: collection date

text: No

text: Australia

characteristic: geographic location (country and/or sea)

text: Badgingarra

text: diseased

text: Hordeum vulgare

text: No

text: leaf

characteristic: isolation source host associated

text: Pyrenophora teres f. maculata

text: Pyrenophora teres f. maculata

text: Pyrenophora teres f. maculata SG1

characteristic: title


text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: K

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: W

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 16S rRNA amplicon

text: Lactobacillus kunkeei

characteristic: organism

text: Lactobacillus kunkeei

text: targeted sequencing on hbs-LAB strains

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA amplicon

characteristic: description

text: Lactobacillus apinorum

text: Lactobacillus apinorum

text: targeted sequencing on hbs-LAB strains


text: public

text: 16S rRNA amplicon

text: Lactobacillus mellis

text: Lactobacillus mellis

text: targeted sequencing on hbs-LAB strains


text: public

text: 16S rRNA amplicon

text: Lactobacillus apis

text: Lactobacillus apis

text: targeted sequencing on hbs-LAB strains


text: public

text: 16S rRNA amplicon

text: Lactobacillus helsingborgensis

text: Lactobacillus helsingborgensis

text: targeted sequencing on hbs-LAB strains


text: public

text: 16S rRNA amplicon

text: Lactobacillus melliventris

text: Lactobacillus melliventris

text: targeted sequencing on hbs-LAB strains


text: public

text: 16S rRNA amplicon

text: Lactobacillus kimbladii

text: Lactobacillus kimbladii

text: targeted sequencing on hbs-LAB strains


text: public

text: 16S rRNA amplicon

text: Lactobacillus kullabergensis

text: Lactobacillus kullabergensis

text: targeted sequencing on hbs-LAB strains


text: public

text: 16S rRNA amplicon

text: Bifidobacterium coryneforme

text: Bifidobacterium coryneforme

text: targeted sequencing on hbs-LAB strains


text: Clostridium perfringens ATCC 13124

characteristic: ArrayExpress-Species

text: SC

text: public

text: Clostridium perfringens ATCC 13124

characteristic: common name

text: Clostridium perfringens ATCC 13124

text: Clostridium perfringens ATCC 13124


text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: K

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: RS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

text: stool

text: K

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: C

characteristic: special diet

characteristic: title


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: A

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: Homo sapiens

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: M


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Human

text: human-associated habitat

text: human gut

text: stool

text: United Kingdom

text: stool

text: A

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: W


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: Submitter Id

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: stool

text: A

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Effect of diet on human gut microbiota

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

text: C

characteristic: special diet

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTH DAKOTA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:NORTH DAKOTA STATE UNIVERSITY

text: LB agicultural

text: cool tempreate

text: steppe

text: soil

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: Metagenome Lab 2016

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: soil environmental package


text: NORTH DAKOTA STATE UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: LB agicultural

characteristic: description

text: cool tempreate

characteristic: environment (biome)

text: steppe

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Metagenome Lab 2017

characteristic: project name

text: soil metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTH DAKOTA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: LB agicultural

text: cool tempreate

text: steppe

text: soil

text: USA

text: 46.8922� N -3690980.787278

characteristic: geographic location (latitude)

text: 96.8014� W 30937828.998482

text: metagenome

text: soil metagenome

characteristic: organism

text: Metagenome Lab 2018

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: title


text: NORTH DAKOTA STATE UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: LB duff

characteristic: description

text: cool tempreate

characteristic: environment (biome)

text: steppe

text: soil

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: Metagenome Lab 2019

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTH DAKOTA STATE UNIVERSITY

text: public

text: LB duff

text: cool tempreate

text: steppe

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Metagenome Lab 2020

characteristic: project name

text: soil metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: soil


text: NORTH DAKOTA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: LB duff

text: cool tempreate

text: steppe

text: soil

text: USA

text: 46.8922� N -3690980.787278

characteristic: geographic location (latitude)

text: 96.8014� W 30937828.998482

text: metagenome

text: soil metagenome

characteristic: organism

text: Metagenome Lab 2021

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTH DAKOTA STATE UNIVERSITY

text: public

text: CMA agricultural

characteristic: description

text: cool tempreate

characteristic: environment (biome)

text: steppe

text: soil

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: Metagenome Lab 2022

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: soil environmental package


text: NORTH DAKOTA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CMA agricultural

text: cool tempreate

text: steppe

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Metagenome Lab 2023

characteristic: project name

text: soil metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTH DAKOTA STATE UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: CMA agricultural

text: cool tempreate

text: steppe

text: soil

text: USA

text: 46.8922� N -3690980.787278

characteristic: geographic location (latitude)

text: 96.8014� W 30937828.998482

text: metagenome

text: soil metagenome

characteristic: organism

text: Metagenome Lab 2024

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: title


text: NORTH DAKOTA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CMA duff

characteristic: description

text: cool tempreate

characteristic: environment (biome)

text: steppe

text: soil

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: Metagenome Lab 2025

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTH DAKOTA STATE UNIVERSITY

text: public

text: CMA duff

text: cool tempreate

text: steppe

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Metagenome Lab 2026

characteristic: project name

text: soil metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: soil


text: NORTH DAKOTA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: CMA duff

text: cool tempreate

text: steppe

text: soil

text: USA

text: 46.8922� N -3690980.787278

characteristic: geographic location (latitude)

text: 96.8014� W 30937828.998482

text: metagenome

text: soil metagenome

characteristic: organism

text: Metagenome Lab 2027

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTH DAKOTA STATE UNIVERSITY

text: public

text: whole agricultural

characteristic: description

text: cool tempreate

characteristic: environment (biome)

text: steppe

text: soil

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: Metagenome Lab 2028

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: soil environmental package


text: NORTH DAKOTA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: whole agricultural

text: cool tempreate

text: steppe

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Metagenome Lab 2029

characteristic: project name

text: soil metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTH DAKOTA STATE UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: whole agricultural

text: cool tempreate

text: steppe

text: soil

text: USA

text: 46.8922� N -3690980.787278

characteristic: geographic location (latitude)

text: 96.8014� W 30937828.998482

text: metagenome

text: soil metagenome

characteristic: organism

text: Metagenome Lab 2030

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: title


text: NORTH DAKOTA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: whole duff

characteristic: description

text: cool tempreate

characteristic: environment (biome)

text: steppe

text: soil

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: Metagenome Lab 2031

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTH DAKOTA STATE UNIVERSITY

text: public

text: whole duff

text: cool tempreate

text: steppe

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: 46.8922� N -3690980.787278

text: 96.8014� W 30937828.998482

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Metagenome Lab 2032

characteristic: project name

text: soil metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: soil


text: NORTH DAKOTA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: whole duff

text: cool tempreate

text: steppe

text: soil

text: USA

text: 46.8922� N -3690980.787278

characteristic: geographic location (latitude)

text: 96.8014� W 30937828.998482

text: metagenome

text: soil metagenome

characteristic: organism

text: Metagenome Lab 2033

text: soil metagenome

text: Ion Torrent PGM

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: SSI

characteristic: collected by

text: No

characteristic: environmental sample

text: India

characteristic: geographic location (longitude)

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Bareilly

characteristic: serovar

text: Historical Danish Salmonella Outbreaks


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SSI

text: No

text: Denmark

characteristic: geographic location (country and/or sea)

text: not collected

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Bareilly

text: Historical Danish Salmonella Outbreaks


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

text: public

text: SSI

characteristic: collection date

text: No

text: Ukraine

characteristic: geographic location (latitude)

text: not collected

text: Homo sapiens

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Bareilly

text: Historical Danish Salmonella Outbreaks

characteristic: title


characteristic: External Id

text: SSI

text: public

text: SSI

characteristic: collected by

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (longitude)

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica

text: Poona

text: Historical Danish Salmonella Outbreaks


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SSI

text: No

text: Thailand

text: not collected

text: Homo sapiens

text: Yes

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Poona

characteristic: serovar

text: Historical Danish Salmonella Outbreaks


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

text: public

characteristic: Submitter Id

text: SSI

characteristic: collection date

text: No

text: Thailand

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not collected

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Bareilly

text: Historical Danish Salmonella Outbreaks


characteristic: External Id

text: SSI

text: public

text: SSI

characteristic: collected by

text: No

characteristic: environmental sample

text: Lebanon

characteristic: geographic location (longitude)

text: not collected

characteristic: host health state

text: Homo sapiens

text: Yes

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Poona

text: Historical Danish Salmonella Outbreaks

characteristic: title


text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

text: stool

characteristic: host body product

text: A

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: RS

characteristic: special diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: SSI

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Newport

characteristic: serovar

text: Historical Danish Salmonella Outbreaks

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SSI

text: No

text: Tanzania

text: not collected

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Newport

text: Historical Danish Salmonella Outbreaks


characteristic: External Id

text: SSI

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: SSI

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Mexico

characteristic: geographic location (country and/or sea)

text: not collected

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Newport

text: Historical Danish Salmonella Outbreaks


text: SSI

text: public

text: SSI

text: No

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Poona

text: Historical Danish Salmonella Outbreaks


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SSI

text: No

text: Turkey

text: not collected

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Newport

characteristic: serovar

text: Historical Danish Salmonella Outbreaks

characteristic: title


characteristic: External Id

text: SSI

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SSI

characteristic: collected by

characteristic: collection date

text: No

text: Philippines

text: not collected

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Newport

text: Historical Danish Salmonella Outbreaks


text: SSI

text: public

text: SSI

text: No

characteristic: environmental sample

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica

text: Newport

text: Historical Danish Salmonella Outbreaks


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SSI

text: No

text: Sri Lanka

text: not collected

text: Homo sapiens

text: Yes

characteristic: isolate

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Poona

text: Historical Danish Salmonella Outbreaks


characteristic: External Id

text: SSI

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SSI

text: No

text: Indonesia

text: not collected

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Newport

characteristic: serovar

text: Historical Danish Salmonella Outbreaks

characteristic: title


text: SSI

text: public

text: SSI

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Kuwait

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not collected

characteristic: host health state

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Newport

text: Historical Danish Salmonella Outbreaks


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SSI

text: No

text: Egypt

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

text: Salmonella enterica

text: Newport

text: Historical Danish Salmonella Outbreaks


characteristic: External Id

text: SSI

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SSI

text: No

text: Viet Nam

text: not collected

text: Homo sapiens

text: Yes

characteristic: isolate

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Newport

text: Historical Danish Salmonella Outbreaks


text: SSI

text: public

text: SSI

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Cambodia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not collected

text: Homo sapiens

text: Yes

text: Salmonella enterica

text: Salmonella enterica

text: Newport

characteristic: serovar

text: Historical Danish Salmonella Outbreaks

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GHENT UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:GHENT UNIVERSITY

text: human

characteristic: common name

text: BAM file of the SNPforID reads created by Illumina sequencing This BAM file contains the mapped subreads of the 9947A sample. The reference against which the data was mapped contained the SNP and 25bp on either side of the SNP.

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: 9947A BAM Illumina


characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: The sequencing data of the SNPforID amplicons (not spliced into subreads) using the R9.4 SpotOn flow cell in combination with the 2D Amplicon by ligation (SQK-LSK208) chemistry

text: Homo sapiens

text: Homo sapiens

text: MiniION fastq


text: UNIBE-IG

text: public

text: cattle

text: crossbred

text: Bos taurus

characteristic: organism

text: Bos taurus

text: crossbred


text: UNIBE-IG

text: public

text: cattle

text: Angus

text: Bos taurus

text: Bos taurus

text: Angus


text: UNIBE-IG

text: public

text: cattle

text: Holstein x Simmental

text: Bos taurus

text: Bos taurus

text: Holstein x Simmental


text: UNIBE-IG

text: public

text: cattle

text: Simmental

text: Bos taurus

text: Bos taurus

text: Simmental


text: UNIBE-IG

text: public

text: cattle

text: Eringer

text: Bos taurus

text: Bos taurus

text: Eringer


text: UNIBE-IG

text: public

text: cattle

text: Holstein

text: Bos taurus

text: Bos taurus

text: Holstein


text: UNIBE-IG

text: public

text: cattle

text: Brown Swiss

text: Bos taurus

text: Bos taurus

text: Brown Swiss


text: BIHP, INSTITUT PASTEUR

text: public

tag: Namespace:BIHP, INSTITUT PASTEUR

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Histone H3 clipping


text: BIHP, INSTITUT PASTEUR

text: public

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Histone H3 clipping


text: public

tag: Namespace:Department of Cell Biology, Faculty of Science, Charles University

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: Protocols: Thirty milliliters of yeast cultures were grown at 30 °C in the YPAD medium (1% yeast extract, 2% peptone, 0.01% adenine, 2% glucose). Cells (8 ml of culture) were harvested by centrifugation (1000 g, 3 min, room temperature) at the exponentional growth phase (OD600 ~1.8). Cell pellets were stored at -80 °C. Thaw cell pellets on ice (~5 min). Add 400 ul of extraction buffer (1 mM EDTA, 0.1 M LiCl, 0.1 M Tris-HCl pH 7.5, 1% SDS), 400 ul of glass beads and 400 ul of acidic phenol (pH 4.3):chloroform:isoamylalcohol (25:24:1) solution. Disrupt the cells in FastPrep-24 (MP Biomedicals) (speed 6, duration 25 s) using 3 shaking cycles with 5 minutes incubations on ice in between. Pellet the debris by centrifugation (20 000 g, 10 min, 4 °C). Transfer the supernatant to a new microcentrifuge tube. Add 30 ul of 40% KAc (pH 5.5) and 400 ul of phenol (pH 4.3):chloroform:isoamylalcohol (25:24:1) solution. Mix vigorously by vortexing for 30 s and repeat the centrifugation step. Transfer the upper phase to a new microcentrifuge tube, add 1 ml of 96% EtOH, mix by inverting the tube and let RNA precipitate for at least 1 h at -20 °C. Pellet the RNA by centrifugation (20 000 g, 15 min, 4 °C). Remove the supernatant and rinse the pellet with 70% EtOH. Let the RNA pellet dry. Dissolve the RNA pellet in 150 ul of DEPC-treated water and measure RNA concentration on Nanodrop 2000 (Thermo Scientific). Take the volume corresponding to 150 ug of RNA. Add DEPC-treated water to the final volume of 175 ul, add 20 ul of DNase buffer and 5 ul of DNase from the MasterPure Yeast RNA purification kit (Epicentre). Finish the RNA preparation with this kit according to the manufacturer’s protocol, starting with step 4 in section B of the protocol. After the last rinse with 70% EtOH (step 12), add 500 ul of 70% EtOH to the RNA pellet and store the samples at -20 °C. Strand-specific paired-end RNA-seq libraries were constructed from poly(A)-enriched RNA samples by BGI Genomics using their standard procedure.

text: deletion of rpl22A intron

characteristic: genetic modification

text: MATa his31 leu20 met150 ura30 rpl22Ai

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: replicate

text: Saccharomyces cerevisiae

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Cell Biology, Faculty of Science, Charles University

text: public

text: ArrayExpress

text: baker's yeast

text: deletion of rpl22A intron

text: MAT his31 leu20 lys20 ura30 rpl22Ai

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: baker's yeast

text: deletion of rpl22A whole gene

text: MATa his31 leu20 met150 ura30 YLR061w::kanMX4

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: External Id

text: public

text: ArrayExpress

text: baker's yeast

characteristic: common name

characteristic: description

text: deletion of rpl22B intron

text: MATa his31 leu20 met150 ura30 rpl22Bi

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: deletion of rpl22B intron

text: MAT his31 leu20 lys20 ura30 rpl22Bi

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: deletion of rpl22B whole gene

text: MATa his31 leu20 met150 ura30 YFL034C-A::kanMX4

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: public

text: ArrayExpress

text: baker's yeast

text: MATa his31 leu20 met150 ura30

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: replicate

text: Saccharomyces cerevisiae


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: baker's yeast

text: MAT his31 leu20 lys20 ura30

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain


9947A Illumina fastq1

characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

text: 9947A Illumina fastq1

text: human

text: Fastq file containing all the raw Illumina reads.

text: Homo sapiens

text: Homo sapiens

text: Illumina fastq

characteristic: title


text: female

characteristic: ArrayExpress-Sex

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: IP

characteristic: sample description

text: Homo sapiens


characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: collection date

text: Human

characteristic: common name

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: B

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Effect of diet on human gut microbiota

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq paired-end 250bp

characteristic: sequencing method

text: M

characteristic: special diet


text: female

characteristic: ArrayExpress-Sex

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

characteristic: organism

text: input

characteristic: sample description

text: Homo sapiens

characteristic: title


text: public

tag: Namespace:Leibniz Institute for Freshwater Ecology and Inland Fisheries

text: TrueSeq adapters

characteristic: adapters

unit: µmol/L

characteristic: ammonium

characteristic: carbon dioxide µm/l

unit: mg/L

characteristic: chloride

characteristic: collection date

text: universal SSU primers

characteristic: description

unit: µg/L

characteristic: dissolved inorganic phosphorus

characteristic: dissolved oxygen in mg/l

text: permafrost

characteristic: environment (biome)

text: pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: iron µm/l

characteristic: methane µm/l

characteristic: nitrate

text: MoBio Power Soil Kit

characteristic: nucleic acid extraction

text: pond metagenome

text: 926F:ACAAACTYRAAGRAATWGRCGG;1392R:CAGACGGGCGGTGWGTRC

characteristic: pcr primers

characteristic: ph

characteristic: project name

text: filtration

characteristic: sample material processing

text: pond metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sulfate

characteristic: suva

unit: ºC

characteristic: temperature

text: SAS 2A

characteristic: total organic carbon mg/l

text: water

characteristic: water environmental package